RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1847
         (86 letters)



>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 40.4 bits (94), Expect = 2e-06
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 10  HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
                    L  +     Q +++Y Y   +    + L   L AA  ++++ L +
Sbjct: 58  FHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 39.3 bits (91), Expect = 6e-06
 Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 3   DESLFTEHFDKH--PIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKG 60
             S+FT+   ++   I +  +I       ++D+MY   +N+ +  + + +  A  +Q++ 
Sbjct: 51  FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH 110

Query: 61  LTQ 63
           +  
Sbjct: 111 VVD 113


>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 172

 Score = 23.0 bits (49), Expect = 5.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 23  KFTELQSMIDYMYEGEVNISQDQ---------LPSFLKAAASIQLKGLTQNV 65
           K  EL  M+ Y+     NI++DQ         L   L A   + ++GL  NV
Sbjct: 71  KLVELYRMVAYLSASLTNITRDQKVLNPTAVSLQVKLNATIDV-MRGLLSNV 121


>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Achromobacter xylosoxidans
           [TaxId: 85698]}
          Length = 162

 Score = 22.6 bits (48), Expect = 7.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 25  TELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKG 60
           T   S++D  +  + N + +++   LKAA+  +LKG
Sbjct: 86  TINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKG 121


>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein
          IscX {Escherichia coli [TaxId: 562]}
          Length = 64

 Score = 21.9 bits (47), Expect = 7.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 11 FDKHPIIILKDIKFTELQSMI 31
          +D +P +  K ++FT++   I
Sbjct: 15 YDAYPDLDPKTVRFTDMHQWI 35


>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease
          virus [TaxId: 12110]}
          Length = 156

 Score = 22.5 bits (48), Expect = 8.1
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 3  DESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEG 37
          +E  F   +     + L+ IK  E  + ++    G
Sbjct: 36 EEPFFDWVYSSPENLTLEAIKQLEDLTGLELHEGG 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 281,037
Number of extensions: 10161
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 10
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)