BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy185
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NBA|A Chain A, Phosphopantetheine Adenylyltranferase From Mycobacterium
Tuberculosis In Complex With
Adenosine-5'-[(Alpha,Beta)-Methyleno]triphosphate
(Ampcpp)
pdb|3NBA|B Chain B, Phosphopantetheine Adenylyltranferase From Mycobacterium
Tuberculosis In Complex With
Adenosine-5'-[(Alpha,Beta)-Methyleno]triphosphate
(Ampcpp)
pdb|3NBA|C Chain C, Phosphopantetheine Adenylyltranferase From Mycobacterium
Tuberculosis In Complex With
Adenosine-5'-[(Alpha,Beta)-Methyleno]triphosphate
(Ampcpp)
pdb|3NBA|D Chain D, Phosphopantetheine Adenylyltranferase From Mycobacterium
Tuberculosis In Complex With
Adenosine-5'-[(Alpha,Beta)-Methyleno]triphosphate
(Ampcpp)
pdb|3NBK|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With 4'-Phosphopantetheine
pdb|3NBK|B Chain B, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With 4'-Phosphopantetheine
pdb|3NBK|C Chain C, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With 4'-Phosphopantetheine
pdb|3NBK|D Chain D, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With 4'-Phosphopantetheine
pdb|3PNB|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With Coenzyme A
pdb|3PNB|B Chain B, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With Coenzyme A
pdb|3PNB|C Chain C, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With Coenzyme A
pdb|3PNB|D Chain D, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis In Complex With Coenzyme A
Length = 177
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 55 EYTLLLSQFNYDGLGVDTFFWAGTSPR 81
EY L ++Q N GVDTFF A T+PR
Sbjct: 116 EYELQMAQMNKHIAGVDTFFVA-TAPR 141
>pdb|3LCJ|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis Complexed With Coa
pdb|4E1A|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis At 1.62a Resolution
Length = 161
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 55 EYTLLLSQFNYDGLGVDTFFWAGTSPR 81
EY L ++Q N GVDTFF A T+PR
Sbjct: 96 EYELQMAQMNKHIAGVDTFFVA-TAPR 121
>pdb|1TFU|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis
pdb|3RBA|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis Complexed With Dpcoa
pdb|3RFF|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis (1.76 A Resolution)
pdb|3RHS|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis Complexed With Coa
pdb|3UC5|A Chain A, Phosphopantetheine Adenylyltransferase From Mycobacterium
Tuberculosis Complexed With Atp
Length = 157
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 55 EYTLLLSQFNYDGLGVDTFFWAGTSPR 81
EY L ++Q N GVDTFF A T+PR
Sbjct: 96 EYELQMAQMNKHIAGVDTFFVA-TAPR 121
>pdb|2Z35|A Chain A, Crystal Structure Of Immune Receptor
Length = 112
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 45 QVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQ 85
Q GG+V A++E L NY G FW P GPQ
Sbjct: 5 QTGGQV-ALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQ 44
>pdb|2PXY|A Chain A, Crystal Structures Of Immune Receptor Complexes
Length = 114
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 45 QVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQ 85
Q GG+V A++E L NY G FW P GPQ
Sbjct: 7 QTGGQV-ALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQ 46
>pdb|2Z31|A Chain A, Crystal Structure Of Immune Receptor Complex
Length = 112
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 45 QVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQ 85
Q GG+V A++E L NY G FW P GPQ
Sbjct: 5 QTGGQV-ALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQ 44
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 21 SIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGL 68
+ ++++ PY KP+G++ + +GG Y E+++ L + +D L
Sbjct: 123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYG-EEFSVKLLEEAFDHL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,539,491
Number of Sequences: 62578
Number of extensions: 140447
Number of successful extensions: 275
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)