BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy185
         (95 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9VGY6|SKEL1_DROME Protein Skeletor, isoforms B/C OS=Drosophila melanogaster
          GN=Skeletor PE=1 SV=2
          Length = 784

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 27 AGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQG 86
          A  PY G  IG +   HH V G+VYAV+  T+ + +FNYDG     +F+ G + RP  +G
Sbjct: 28 AAYPYYGTKIGALTRLHHGVSGDVYAVDSRTIFIKKFNYDGEAPAAYFYVGNTARPSNEG 87

Query: 87 FL-VTDEHG 94
             + DE G
Sbjct: 88 AARLRDERG 96



 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%)

Query: 32  RGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQGFLVTD 91
           R + I  +   H      +  V+  TLL+  F+YDG   D  FW G   RP   G  + D
Sbjct: 150 RPQKISALRGVHGVSSDNIVIVDAQTLLVPNFSYDGEAPDAKFWVGRGQRPTSDGLRIPD 209

Query: 92  EHGK 95
           E+GK
Sbjct: 210 ENGK 213


>sp|Q9GPJ1|SKEL2_DROME Protein Skeletor, isoforms D/E OS=Drosophila melanogaster
          GN=Skeletor PE=1 SV=3
          Length = 1503

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 27 AGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQG 86
          A  PY G  IG +   HH V G+VYAV+  T+ + +FNYDG     +F+ G + RP  +G
Sbjct: 28 AAYPYYGTKIGALTRLHHGVSGDVYAVDSRTIFIKKFNYDGEAPAAYFYVGNTARPSNEG 87

Query: 87 FL-VTDEHG 94
             + DE G
Sbjct: 88 AARLRDERG 96



 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%)

Query: 32  RGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQGFLVTD 91
           R + I  +   H      +  V+  TLL+  F+YDG   D  FW G   RP   G  + D
Sbjct: 150 RPQKISALRGVHGVSSDNIVIVDAQTLLVPNFSYDGEAPDAKFWVGRGQRPTSDGLRIPD 209

Query: 92  EHGK 95
           E+GK
Sbjct: 210 ENGK 213


>sp|Q1ATQ8|DTD_RUBXD D-tyrosyl-tRNA(Tyr) deacylase OS=Rubrobacter xylanophilus (strain
          DSM 9941 / NBRC 16129) GN=dtd PE=3 SV=1
          Length = 146

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 33 GKPIGKINSYHHQVGGEVYAVNEYTLL 59
          G   GK+N     VGGEV AV+++TLL
Sbjct: 56 GDEQGKMNLSVRDVGGEVLAVSQFTLL 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.139    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,554,070
Number of Sequences: 539616
Number of extensions: 1677058
Number of successful extensions: 3240
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3235
Number of HSP's gapped (non-prelim): 5
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)