Query psy185
Match_columns 95
No_of_seqs 101 out of 121
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:53:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00686 DM13 Domain present 99.9 3.5E-23 7.5E-28 143.9 6.4 53 42-94 2-56 (108)
2 KOG4731|consensus 99.8 5.1E-20 1.1E-24 154.2 6.2 66 30-95 30-96 (512)
3 PF10517 DM13: Electron transf 99.6 3.6E-16 7.8E-21 106.0 5.6 54 41-94 8-63 (108)
4 KOG4731|consensus 99.6 2.4E-15 5.3E-20 126.3 6.1 89 5-95 121-220 (512)
5 PF00626 Gelsolin: Gelsolin re 89.4 0.16 3.5E-06 30.8 0.8 23 46-81 16-38 (76)
6 smart00262 GEL Gelsolin homolo 81.5 1.7 3.7E-05 27.5 2.6 25 46-83 24-48 (90)
7 PF13449 Phytase-like: Esteras 71.3 8.4 0.00018 30.2 4.5 51 15-68 1-59 (326)
8 smart00155 PLDc Phospholipase 44.3 33 0.00072 17.7 2.6 21 48-68 7-27 (28)
9 PF01011 PQQ: PQQ enzyme repea 42.5 13 0.00028 20.4 0.8 13 45-57 7-19 (38)
10 TIGR02276 beta_rpt_yvtn 40-res 38.2 56 0.0012 17.1 3.0 25 47-71 13-37 (42)
11 PF03050 DDE_Tnp_IS66: Transpo 34.9 45 0.00099 24.9 3.0 32 47-81 66-97 (271)
12 PF05096 Glu_cyclase_2: Glutam 31.6 29 0.00063 27.8 1.5 35 47-81 109-149 (264)
13 PF13570 PQQ_3: PQQ-like domai 30.9 37 0.00081 18.4 1.5 11 47-57 30-40 (40)
14 PRK06518 hypothetical protein; 25.8 57 0.0012 24.3 2.1 17 45-61 23-39 (177)
15 PF09922 DUF2154: Cell wall-ac 23.8 92 0.002 20.9 2.7 61 12-76 44-106 (115)
16 TIGR03380 agmatine_aguA agmati 23.6 68 0.0015 26.4 2.4 23 47-69 90-113 (357)
17 COG5321 Uncharacterized protei 22.9 1.2E+02 0.0025 23.0 3.3 49 45-94 57-116 (164)
18 cd06381 PBP1_iGluR_delta_like 20.1 1.2E+02 0.0026 24.1 3.1 40 41-80 313-357 (363)
No 1
>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9.
Probab=99.88 E-value=3.5e-23 Score=143.87 Aligned_cols=53 Identities=42% Similarity=0.784 Sum_probs=50.8
Q ss_pred cCcceece-EEEEeCCEEEEeceeecCCCccEEEEecCCCCCCCC-ceEecCCCC
Q psy185 42 YHHQVGGE-VYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQ-GFLVTDEHG 94 (95)
Q Consensus 42 ~~h~VsG~-V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps~~-G~kvPdE~G 94 (95)
.+|+|+|. |+|+|+|||+|+||+|||+|||||||+|++++|++. |++||||+|
T Consensus 2 ~~h~v~g~~V~i~d~~Tl~I~~FsydG~~pD~yF~~g~~~~p~~~~G~~v~de~g 56 (108)
T smart00686 2 LQHGVSSDPVEIVDAKTLRIPNFSYDGSGPDAYFWVGAGSRPDNEGGKKVPDEYG 56 (108)
T ss_pred CcccccceeEEEEeCCEEEEcceeccCCCCcEEEEeccCCCCCCcCCeEcCCccC
Confidence 57999888 999999999999999999999999999999999998 999999987
No 2
>KOG4731|consensus
Probab=99.80 E-value=5.1e-20 Score=154.16 Aligned_cols=66 Identities=47% Similarity=0.851 Sum_probs=63.6
Q ss_pred CCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCCCCce-EecCCCCC
Q psy185 30 PYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQGF-LVTDEHGK 95 (95)
Q Consensus 30 ~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps~~G~-kvPdE~G~ 95 (95)
||+|+++|+|++++|+|||+|+|||++||+|.||+|||.+||+|||+|.+.+|+++|+ +.++|+|+
T Consensus 30 py~G~~lGels~lehqVsG~Vf~Vns~t~qI~nF~~~~~~~d~~fw~~~sn~psn~gi~~~~~e~G~ 96 (512)
T KOG4731|consen 30 PYYGVYLGELSSLEHQVSGDVFAVNSTTFQIVNFNYDGGPPDVFFWGGMSNRPSNEGIRHNDDEYGS 96 (512)
T ss_pred cccceeeeeccccccccceeEEEEeeeEEEEEEeccCCCCCceEEEeccCCCCCCcccccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999996 48899985
No 3
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=99.64 E-value=3.6e-16 Score=106.04 Aligned_cols=54 Identities=44% Similarity=0.833 Sum_probs=48.4
Q ss_pred ccCcceeceEEEEeCCEEEEeceeecCC-CccEEEEecCCCCCCCCceEec-CCCC
Q psy185 41 SYHHQVGGEVYAVNEYTLLLSQFNYDGL-GVDTFFWAGTSPRPGPQGFLVT-DEHG 94 (95)
Q Consensus 41 ~~~h~VsG~V~ivD~~Tl~I~nFsYDG~-gPDayFwvG~~~~Ps~~G~kvP-dE~G 94 (95)
...|.+||+|+|+|++|++|.+|+|||+ |||+|||++++..|++.+++++ +|++
T Consensus 8 ~~~h~vsG~v~i~d~~t~~i~~f~f~~~~gPD~~~~l~~~~~~~~~~~~~~~~~~~ 63 (108)
T PF10517_consen 8 SGGHGVSGTVTIVDGKTFLIFNFNFDGSQGPDLYFWLGKGPSPTPDGFIIPSDEYV 63 (108)
T ss_pred CCCceeeEEEEEeCCCeEEEecccccCCCCCCEEEEEECCCCCCCcccccccccce
Confidence 3459999999999999999999999995 8999999999999999999877 5553
No 4
>KOG4731|consensus
Probab=99.58 E-value=2.4e-15 Score=126.28 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=77.3
Q ss_pred CCCccceeecc---cccceeecCCCcCCCCCceeeccccccCcce-eceEEEEeCCEEEEeceeecCCCccEEEEe-cCC
Q psy185 5 ALPRQTHWEDQ---LLSSSSIPLLWAGEPYRGKPIGKINSYHHQV-GGEVYAVNEYTLLLSQFNYDGLGVDTFFWA-GTS 79 (95)
Q Consensus 5 ~~~~~~~~~d~---~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~V-sG~V~ivD~~Tl~I~nFsYDG~gPDayFwv-G~~ 79 (95)
++---.+||+. +||+|+||+.++ +|..++.++|+...|++ |+.|+++|++||+|++|+|||+++...||. |.+
T Consensus 121 e~kw~sv~~l~ta~nfg~Vv~pee~d--~P~~es~~~~s~~~~~v~SdnieviDarTlki~~Fsy~g~~~~~~y~~AG~G 198 (512)
T KOG4731|consen 121 EIKWFSVWDLPTASNFGDVVIPEESD--TPKAESPPSFSNGVYGVSSDNIEVIDARTLKIPCFSYDGKYRPRWYFNAGRG 198 (512)
T ss_pred heeeEEEEEccCCCcccceeccCCCC--CccccCCcccccCccccccCCeeEeccceeeeccccccCccCCceEEecccc
Confidence 34445688876 499999999999 89999999999888887 888999999999999999999877777777 999
Q ss_pred CCCCCCceE------ecCCCCC
Q psy185 80 PRPGPQGFL------VTDEHGK 95 (95)
Q Consensus 80 ~~Ps~~G~k------vPdE~G~ 95 (95)
++|++.+-| .|+|.|+
T Consensus 199 ~~~s~~s~kk~ai~~~~~~~~~ 220 (512)
T KOG4731|consen 199 DIPSSASGKKLAIMAFDDEKGY 220 (512)
T ss_pred CcccccccceeeeecccccccC
Confidence 999998887 7888764
No 5
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=89.40 E-value=0.16 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=19.7
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPR 81 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~ 81 (95)
-++.+||+|..+ ..|.|+|..++
T Consensus 16 ~s~~~yIld~~~-------------~i~vW~G~~~~ 38 (76)
T PF00626_consen 16 NSDDCYILDCGY-------------EIFVWVGKKSS 38 (76)
T ss_dssp ETTSEEEEEESS-------------EEEEEEHTTSH
T ss_pred CCCCEEEEEeCC-------------CcEEEEeccCC
Confidence 488999999887 89999999854
No 6
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=81.46 E-value=1.7 Score=27.47 Aligned_cols=25 Identities=16% Similarity=0.559 Sum_probs=20.5
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPG 83 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps 83 (95)
-|+++||||.. .+.|.|+|...++.
T Consensus 24 ~s~d~fild~~-------------~~iyvW~G~~as~~ 48 (90)
T smart00262 24 NSGDCYILDTG-------------SEIYVWVGKKSSQD 48 (90)
T ss_pred CCCCEEEEECC-------------CEEEEEECCCCCHH
Confidence 38899999964 58999999998754
No 7
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.26 E-value=8.4 Score=30.18 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=39.2
Q ss_pred ccccceeecCCCcCCCCCceeeccccccCcc-eeceEEEE-eCCE------EEEeceeecCC
Q psy185 15 QLLSSSSIPLLWAGEPYRGKPIGKINSYHHQ-VGGEVYAV-NEYT------LLLSQFNYDGL 68 (95)
Q Consensus 15 ~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~-VsG~V~iv-D~~T------l~I~nFsYDG~ 68 (95)
|++|.+.||..+. ..+..+|-||...+. -.|..++| |... ++...+.++..
T Consensus 1 ~~lg~~~~~~~~~---~~~~~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~ 59 (326)
T PF13449_consen 1 EYLGEYTLPSGWE---FDGIPFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG 59 (326)
T ss_pred CccCcEeeccCcc---cCCCccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC
Confidence 5788999999987 556889999999888 68888888 6665 56666666433
No 8
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=44.33 E-value=33 Score=17.69 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.2
Q ss_pred ceEEEEeCCEEEEeceeecCC
Q psy185 48 GEVYAVNEYTLLLSQFNYDGL 68 (95)
Q Consensus 48 G~V~ivD~~Tl~I~nFsYDG~ 68 (95)
..+.++|.+++.|-+++++..
T Consensus 7 ~K~~v~D~~~~~iGs~N~~~~ 27 (28)
T smart00155 7 TKLMIVDDEIAYIGSANLDGR 27 (28)
T ss_pred eEEEEEcCCEEEEeCccCCCC
Confidence 467899999999998888753
No 9
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=42.51 E-value=13 Score=20.38 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.7
Q ss_pred ceeceEEEEeCCE
Q psy185 45 QVGGEVYAVNEYT 57 (95)
Q Consensus 45 ~VsG~V~ivD~~T 57 (95)
...|.|+++|++|
T Consensus 7 ~~~g~l~AlD~~T 19 (38)
T PF01011_consen 7 TPDGYLYALDAKT 19 (38)
T ss_dssp TTTSEEEEEETTT
T ss_pred CCCCEEEEEECCC
Confidence 4578899999886
No 10
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=38.18 E-value=56 Score=17.10 Aligned_cols=25 Identities=12% Similarity=-0.218 Sum_probs=16.9
Q ss_pred eceEEEEeCCEEEEeceeecCCCcc
Q psy185 47 GGEVYAVNEYTLLLSQFNYDGLGVD 71 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG~gPD 71 (95)
++.|.++|.+|..+....=-|..|.
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~ 37 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPF 37 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCc
Confidence 6678888887777766555555554
No 11
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition. This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.86 E-value=45 Score=24.95 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=28.8
Q ss_pred eceEEEEeCCEEEEeceeecCCCccEEEEecCCCC
Q psy185 47 GGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPR 81 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~ 81 (95)
+++|.-+|+++++|-+ .+++...|+||-.+..
T Consensus 66 ~~~~~~~DET~~~vl~---~~~g~~~~~Wv~~~~~ 97 (271)
T PF03050_consen 66 SSPVVHADETGWRVLD---KGKGKKGYLWVFVSPE 97 (271)
T ss_pred ccceeccCCceEEEec---cccccceEEEeeeccc
Confidence 7889999999999988 8899999999988765
No 12
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=31.57 E-value=29 Score=27.76 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=24.4
Q ss_pred eceEEEEeCCEE-EEeceeecCCCc-----cEEEEecCCCC
Q psy185 47 GGEVYAVNEYTL-LLSQFNYDGLGV-----DTFFWAGTSPR 81 (95)
Q Consensus 47 sG~V~ivD~~Tl-~I~nFsYDG~gP-----DayFwvG~~~~ 81 (95)
++..++.|.+|| .|..|+|+|+|= +..+|+..|+.
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred CCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 788999999988 578899998763 45667776654
No 13
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=30.85 E-value=37 Score=18.39 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=7.5
Q ss_pred eceEEEEeCCE
Q psy185 47 GGEVYAVNEYT 57 (95)
Q Consensus 47 sG~V~ivD~~T 57 (95)
.|.||++|.+|
T Consensus 30 dg~l~ald~~t 40 (40)
T PF13570_consen 30 DGNLYALDAAT 40 (40)
T ss_dssp TSEEEEEETT-
T ss_pred CCEEEEEeCCC
Confidence 57788888765
No 14
>PRK06518 hypothetical protein; Provisional
Probab=25.77 E-value=57 Score=24.33 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=15.2
Q ss_pred ceeceEEEEeCCEEEEe
Q psy185 45 QVGGEVYAVNEYTLLLS 61 (95)
Q Consensus 45 ~VsG~V~ivD~~Tl~I~ 61 (95)
.++|.|.|+|..||.|.
T Consensus 23 ~~~G~v~V~DGDTl~l~ 39 (177)
T PRK06518 23 IFHGRAQVTSGVTFKLI 39 (177)
T ss_pred cccceEEEEcCCEEEEe
Confidence 46999999999999995
No 15
>PF09922 DUF2154: Cell wall-active antibiotics response protein (DUF2154); InterPro: IPR024425 This domain is found in various prokaryotic proteins, including cell wall-active antibiotic response proteins.
Probab=23.83 E-value=92 Score=20.90 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=29.0
Q ss_pred eeccccc--ceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCCccEEEEe
Q psy185 12 WEDQLLS--SSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWA 76 (95)
Q Consensus 12 ~~d~~~~--~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwv 76 (95)
.-+..|| .+++|+++.-.--.-..+|+++-..+..+| +..+++.+..=.|+..++-....+
T Consensus 44 ~i~~~~G~v~I~VP~~~~V~~~~~~~~G~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~ 106 (115)
T PF09922_consen 44 DIDAGFGDVTIYVPEDWGVRVNVSTIFGDVSVFDRESSG----IRNERVTYESPNYDQSEPKLIITV 106 (115)
T ss_pred EEEEEEcCEEEEECCCCEEEEEEEeEEEEEEEcCCcccc----eecceeeecCCCcCCCCcEEEEEE
Confidence 3445566 456777777333333333433321111111 223456666666677666555443
No 16
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=23.62 E-value=68 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.0
Q ss_pred eceEEEEeCC-EEEEeceeecCCC
Q psy185 47 GGEVYAVNEY-TLLLSQFNYDGLG 69 (95)
Q Consensus 47 sG~V~ivD~~-Tl~I~nFsYDG~g 69 (95)
.|.++++|.+ .+.+.+|.|+|=|
T Consensus 90 ~GP~fv~~~~g~~~~vdf~FNgWG 113 (357)
T TIGR03380 90 TGPTFVVNDKGEIRGVDWEFNAWG 113 (357)
T ss_pred CCCEEEEcCCCCEEEEeeeeeccc
Confidence 7899999776 6999999999955
No 17
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.86 E-value=1.2e+02 Score=22.96 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=34.9
Q ss_pred ceeceEEEEeCCEEEEeceeecCCCc------cEEEEecCCCC-----CCCCceEecCCCC
Q psy185 45 QVGGEVYAVNEYTLLLSQFNYDGLGV------DTFFWAGTSPR-----PGPQGFLVTDEHG 94 (95)
Q Consensus 45 ~VsG~V~ivD~~Tl~I~nFsYDG~gP------DayFwvG~~~~-----Ps~~G~kvPdE~G 94 (95)
.-+|+|.||.-|+ -|.+|.-|-+=| |.+|++---+. |..-|+++.|-+|
T Consensus 57 s~kGeiwIiEiKs-siEDfrvDrKWpdYr~~cDr~fFAthp~vP~~IfPeecGlilsDGyG 116 (164)
T COG5321 57 SPKGEIWIIEIKS-SIEDFRVDRKWPDYRLHCDRLFFATHPSVPDEIFPEECGLILSDGYG 116 (164)
T ss_pred cCCCcEEEEEeec-chhhhcccccCcchhhhchheeeeccCCCccccCcccCCeEeecccc
Confidence 3489999997776 578999999877 67777654444 3446777776665
No 18
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=20.14 E-value=1.2e+02 Score=24.10 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=33.3
Q ss_pred ccCcceeceEEEEe-----CCEEEEeceeecCCCccEEEEecCCC
Q psy185 41 SYHHQVGGEVYAVN-----EYTLLLSQFNYDGLGVDTFFWAGTSP 80 (95)
Q Consensus 41 ~~~h~VsG~V~ivD-----~~Tl~I~nFsYDG~gPDayFwvG~~~ 80 (95)
..-++++|.|..-+ .-||.|-+.+|.|..-....|+|+=.
T Consensus 313 ~~~~GLTG~i~F~~~g~r~~~~l~i~~~~~~~~~~~~~~~~~~w~ 357 (363)
T cd06381 313 GPITGLTGKLEFNEGGDNSNVQFEILGTGYSETLGKDGRWLATWN 357 (363)
T ss_pred cCccCcceeEEeCCCCCccccEEEEEEeccCCccccceEEeeecc
Confidence 33567899999975 57999999999998888899999765
Done!