Query psy185
Match_columns 95
No_of_seqs 101 out of 121
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:53:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j72_A Macrophage capping prot 71.2 6.3 0.00021 29.9 4.9 53 7-82 19-71 (347)
2 2vik_A Villin 14T; actin-bindi 68.2 8.8 0.0003 26.0 4.7 55 7-84 16-73 (126)
3 1kcq_A Gelsolin, brevin, ADF, 68.0 3.6 0.00012 26.3 2.6 24 46-82 27-50 (104)
4 3cip_G Gelsolin; actin, dictyo 66.1 11 0.00039 25.5 4.9 56 7-85 18-77 (128)
5 2ff3_A Gelsolin; protein-prote 64.5 12 0.00041 26.3 4.9 56 7-85 37-96 (150)
6 1j72_A Macrophage capping prot 54.8 5.9 0.0002 30.0 2.0 23 47-82 161-183 (347)
7 1svq_A Severin; actin-binding; 54.1 5 0.00017 26.2 1.3 24 46-82 37-60 (114)
8 1t44_G Chimera of gelsolin dom 52.2 23 0.00077 24.6 4.6 57 6-85 14-74 (147)
9 2dwv_A Salvador homolog 1 prot 44.9 7.8 0.00027 22.4 1.0 34 9-57 2-35 (49)
10 3tu5_B Gelsolin, protein cordo 43.4 32 0.0011 26.5 4.6 53 7-82 33-89 (297)
11 2gec_A Nucleocapsid protein; N 38.7 21 0.00073 25.4 2.7 30 62-91 71-114 (139)
12 1d0n_A Horse plasma gelsolin; 36.4 45 0.0016 28.1 4.8 55 6-83 12-70 (729)
13 3fg6_A Adseverin, scinderin; C 34.9 34 0.0012 26.5 3.6 51 9-83 54-104 (371)
14 4hsp_A Hypothetical protein; P 32.9 7.5 0.00026 27.7 -0.4 64 7-76 3-80 (150)
15 2fh1_A Gelsolin; calcium, cont 29.7 38 0.0013 25.7 3.0 55 9-83 9-63 (344)
16 2a7l_A Hypothetical ubiquitin- 29.6 29 0.00099 23.4 2.1 44 7-50 63-109 (136)
17 3fg7_A Villin-1; actin binding 29.3 11 0.00039 29.7 0.0 35 47-87 87-122 (398)
18 3hd4_A Nucleoprotein; beta pla 27.8 44 0.0015 23.8 2.8 30 62-91 69-112 (139)
19 4ds2_A Ubiquitin-conjugating e 24.0 34 0.0012 23.5 1.7 33 7-39 59-94 (167)
20 1tk7_A CG4244-PB; WW domain, n 22.5 39 0.0013 21.0 1.6 12 6-17 33-44 (88)
21 2ofz_A Nucleocapsid protein; S 22.5 69 0.0024 22.7 3.0 29 63-91 75-117 (138)
22 2awf_A Ubiquitin-conjugating e 21.3 44 0.0015 23.2 1.8 33 7-39 57-90 (172)
23 1ssk_A Nucleocapsid protein; s 20.8 76 0.0026 22.9 3.0 28 63-90 88-129 (158)
24 2h2y_A Ubiquitin-conjugating e 20.8 47 0.0016 22.1 1.8 32 7-38 59-91 (136)
No 1
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=71.16 E-value=6.3 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.4
Q ss_pred CccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
|.-.+|+=++|--+.+|+..- .+=-+|+-|||= .+|..++-+.|||.|..++.
T Consensus 19 ~g~~iWrie~~~~~~vp~~~~---------------G~Fy~gd~Yivl--------~t~~~~~~~i~~W~G~~ss~ 71 (347)
T 1j72_A 19 PGLHVWRVEKLKPVPVAQENQ---------------GVFFSGDSYLVL--------HNGPEEVSHLHLWIGQQSSR 71 (347)
T ss_dssp SEEEEEEECSSSEEECCTTTT---------------TEEETTSEEEEE--------EECSSSCEEEEEEECTTSCH
T ss_pred CCeEEEEEcCCEEEECCHHHc---------------CeecCCCEEEEE--------EeecCCCeEEEEEcCCCCCH
Confidence 445677766666666665432 112378888872 24555558999999998864
No 2
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=68.15 E-value=8.8 Score=25.99 Aligned_cols=55 Identities=15% Similarity=0.313 Sum_probs=34.5
Q ss_pred CccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCC---CccEEEEecCCCCCC
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGL---GVDTFFWAGTSPRPG 83 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~---gPDayFwvG~~~~Ps 83 (95)
+.-.+|+=++|--+.+|+..- |. =-+|+-|||= . +|... .-+.|||.|..++..
T Consensus 16 ~~l~vWrIe~~~~~~vp~~~~---------G~------Fy~gd~YIvl----~----t~~~~g~~~~~i~~W~G~~ss~d 72 (126)
T 2vik_A 16 PGIQIWRIENMEMVPVPTKSY---------GN------FYEGDCYVLL----S----TRKTGSGFSYNIHYWLGKNSSQD 72 (126)
T ss_dssp CEEEEEECGGGSCCEECTTTT---------TC------CCSSSCEEEE----E----EEECSSSEEEEEEEEECTTSCHH
T ss_pred CCEEEEEEeCCEEEECChhhc---------Ce------eCCCCeEEEE----E----eccCCCceeEEEEEEeCCCCCch
Confidence 344678777776666666543 11 1267777761 1 45544 458999999988654
Q ss_pred C
Q psy185 84 P 84 (95)
Q Consensus 84 ~ 84 (95)
.
T Consensus 73 e 73 (126)
T 2vik_A 73 E 73 (126)
T ss_dssp H
T ss_pred h
Confidence 3
No 3
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=68.05 E-value=3.6 Score=26.31 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=19.4
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
-|++|+|+|.. ...|-|.|.++.+
T Consensus 27 ns~d~FILd~g-------------~~iyvW~G~~s~~ 50 (104)
T 1kcq_A 27 NNGDCFILDLG-------------NNIHQWCGSNSNR 50 (104)
T ss_dssp CTTSEEEEECS-------------SEEEEEECTTCCH
T ss_pred CCCCeEEEeCC-------------CEEEEEeCCCCCH
Confidence 38999999874 3699999998864
No 4
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=66.13 E-value=11 Score=25.48 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=34.5
Q ss_pred CccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceee-cCC---CccEEEEecCCCCC
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNY-DGL---GVDTFFWAGTSPRP 82 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsY-DG~---gPDayFwvG~~~~P 82 (95)
|.-.+|+=++|--+.+|+..- |+ =-+|+-|||= .+| ... .-+.|||.|..++.
T Consensus 18 ~gl~vWrIe~~~~~~vp~~~~-----G~----------Fy~gd~YIvl--------~ty~~~~g~~~~~i~~W~G~~ss~ 74 (128)
T 3cip_G 18 PGLQIWRVEKFDLVPVPTNLY-----GD----------FFTGDAYVIL--------KTVQLRNGNLQYDLHYWLGNECSQ 74 (128)
T ss_dssp SEEEEEEEETTEEEECCGGGT-----TE----------EETTCEEEEE--------EEEECTTSCEEEEEEEEECTTCCH
T ss_pred CCeEEEEEeCCEEEECChHHc-----Ce----------ecCCCeEEEE--------EEEecCCCceEEEEEEEcCCCCCc
Confidence 445678777776666665433 11 1377878772 355 222 35899999998865
Q ss_pred CCC
Q psy185 83 GPQ 85 (95)
Q Consensus 83 s~~ 85 (95)
...
T Consensus 75 de~ 77 (128)
T 3cip_G 75 DES 77 (128)
T ss_dssp HHH
T ss_pred chH
Confidence 433
No 5
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=64.51 E-value=12 Score=26.33 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=33.9
Q ss_pred CccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceee-cCC---CccEEEEecCCCCC
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNY-DGL---GVDTFFWAGTSPRP 82 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsY-DG~---gPDayFwvG~~~~P 82 (95)
|.-.+|+=++|.-+.+|+..- |+ | -+|+-|||= .+| ..+ .-+.|||.|..++.
T Consensus 37 ~gl~VWrIe~~~~v~vp~~~~-----G~----F------ysgD~YIVl--------~ty~~~~g~~~~~IyfW~G~~ss~ 93 (150)
T 2ff3_A 37 PGLQIWRVEKFDLVPVPTNLY-----GD----F------FTGDAYVIL--------KTVQLRNGNLQYDLHYWLGNECSQ 93 (150)
T ss_dssp SEEEEEEEETTEEEECCGGGT-----TE----E------ETTSEEEEE--------EEEECTTSSEEEEEEEEECTTCCH
T ss_pred CCeEEEEEeCCEEEECChHHc-----Ce----e------cCCCeEEEE--------EEEecCCCceEEEEEEEeCCCCCc
Confidence 445677777776666665433 11 1 367777762 255 222 35899999999865
Q ss_pred CCC
Q psy185 83 GPQ 85 (95)
Q Consensus 83 s~~ 85 (95)
...
T Consensus 94 de~ 96 (150)
T 2ff3_A 94 DES 96 (150)
T ss_dssp HHH
T ss_pred hhH
Confidence 433
No 6
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=54.79 E-value=5.9 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.631 Sum_probs=18.1
Q ss_pred eceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 47 GGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
||.+||||. +...|.|.|..+++
T Consensus 161 s~d~FIL~~-------------~~~iy~W~G~~s~~ 183 (347)
T 1j72_A 161 TGDCFILDL-------------GQNIFAWCGGKSNI 183 (347)
T ss_dssp TTSEEEEEE-------------TTEEEEEECTTCCH
T ss_pred CCceEEEec-------------CCEEEEEECCCCCH
Confidence 778888862 34799999999864
No 7
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=54.12 E-value=5 Score=26.22 Aligned_cols=24 Identities=13% Similarity=0.479 Sum_probs=18.6
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
-|++|+|+|.. ...|-|.|.++++
T Consensus 37 ns~D~FILd~g-------------~~iyvW~G~~ss~ 60 (114)
T 1svq_A 37 NSGDCFLLDAG-------------LTIYQFNGSKSSP 60 (114)
T ss_dssp CTTSEEEEEET-------------TEEEECCCTTCCH
T ss_pred CCCCeEEEecC-------------CEEEEEeCCCCCH
Confidence 38889999865 3589999998864
No 8
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=52.24 E-value=23 Score=24.55 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceee-cCC---CccEEEEecCCCC
Q psy185 6 LPRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNY-DGL---GVDTFFWAGTSPR 81 (95)
Q Consensus 6 ~~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsY-DG~---gPDayFwvG~~~~ 81 (95)
.|.-.+|+=++|--+.+|+..- |+ =-+|+-|||= .+| ... .-+.|||.|..++
T Consensus 14 ~~gl~VWrIe~~~~~~vp~~~~-----G~----------Fy~gd~YIvl--------~ty~~~~g~~~~~i~~W~G~~ss 70 (147)
T 1t44_G 14 EPGLQIWRVEKFDLVPVPTNLY-----GD----------FFTGDAYVIL--------KTVQLRNGNLQYDLHYWLGNECS 70 (147)
T ss_dssp SSEEEEEEEETTEEEECCGGGT-----TE----------EETTCEEEEE--------EEEECTTSCEEEEEEEEECTTCC
T ss_pred CCCeEEEEEeCCEEEECChHHc-----Ce----------ecCCCeEEEE--------EEEecCCCceEEEEEEEeCCCCC
Confidence 3455688877777666665443 11 1377877772 255 222 3589999999886
Q ss_pred CCCC
Q psy185 82 PGPQ 85 (95)
Q Consensus 82 Ps~~ 85 (95)
....
T Consensus 71 ~de~ 74 (147)
T 1t44_G 71 QDES 74 (147)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5433
No 9
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.93 E-value=7.8 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=21.4
Q ss_pred cceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCE
Q psy185 9 QTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYT 57 (95)
Q Consensus 9 ~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~T 57 (95)
.|+|+|.+.+ .-+|+.|+. ...-.|.+|.||-.|
T Consensus 2 tt~W~~P~~~-~~LP~GWe~--------------~~d~~g~~YYvnh~t 35 (49)
T 2dwv_A 2 SSGSSGPLER-EGLPPGWER--------------VESSEFGTYYVDHTN 35 (49)
T ss_dssp CSSSCCSCCS-SCCCTTEEE--------------EEETTTEEEEEETTT
T ss_pred eecCcCCCCC-CCCCcCcEE--------------EECCCCCEEEEECCC
Confidence 5789998863 456777661 112357788887554
No 10
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=43.44 E-value=32 Score=26.48 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=34.7
Q ss_pred CccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeec-CC---CccEEEEecCCCCC
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYD-GL---GVDTFFWAGTSPRP 82 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYD-G~---gPDayFwvG~~~~P 82 (95)
|--.+|+=++|.-+.+|+..- |+| -+|+-|||= .+|. .+ .-+.|||+|..++.
T Consensus 33 ~Gl~iWrIe~~~~~~v~~~~~-----G~F----------y~gd~Yivl--------~t~~~~~g~~~~~i~~W~G~~ss~ 89 (297)
T 3tu5_B 33 PGLQIWRVEKFDLVPVPTNLY-----GDF----------FTGDAYVIL--------KTVQLRNGNLQYDLHYWLGNECSQ 89 (297)
T ss_dssp SEEEEEEEETTEEEECCGGGT-----TEE----------ETTCEEEEE--------EEEECTTSCEEEEEEEEECTTCCH
T ss_pred CceEEEEEcCCEEEECCHHHc-----Cee----------cCCCeEEEe--------EeEECCCCceeEEEEEEeCCCCCh
Confidence 445789988888888876543 222 377777762 2332 22 24899999998753
No 11
>2gec_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, viral, viral protein; 1.30A {Infectious bronchitis virus} SCOP: b.148.1.1 PDB: 2bxx_A 2c86_A 2btl_A
Probab=38.69 E-value=21 Score=25.38 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=22.2
Q ss_pred ceeecCCCc----------cEEEEecCCCC---C-CCCceEecC
Q psy185 62 QFNYDGLGV----------DTFFWAGTSPR---P-GPQGFLVTD 91 (95)
Q Consensus 62 nFsYDG~gP----------DayFwvG~~~~---P-s~~G~kvPd 91 (95)
=|-|-|+|| |--|||+.... | +..|.|-|+
T Consensus 71 yFYYlGTGPhadlkyg~~~dgV~WVa~~GA~t~~~~~~gtR~P~ 114 (139)
T 2gec_A 71 YFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPD 114 (139)
T ss_dssp EEEETTCSTTTTSCTTCCCTTEEEEECTTCCTTCCCSCCCCCTT
T ss_pred EEEEecCCccccCcccccCCCEEEEecCCcccCcCCCccccCcc
Confidence 389999999 55789876543 3 678888774
No 12
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=36.38 E-value=45 Score=28.13 Aligned_cols=55 Identities=20% Similarity=0.432 Sum_probs=36.1
Q ss_pred CCccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeec---CC-CccEEEEecCCCC
Q psy185 6 LPRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYD---GL-GVDTFFWAGTSPR 81 (95)
Q Consensus 6 ~~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYD---G~-gPDayFwvG~~~~ 81 (95)
.|.-++|+=++|--+.+|+..- |+| -+|+-||| |. ||. |. .-+.|||.|..++
T Consensus 12 ~~g~~iWrIe~~~~~~v~~~~~-----G~F----------y~gdsYiv----L~----t~~~~~~~~~~~i~~W~G~~ss 68 (729)
T 1d0n_A 12 EPGLQIWRVEKFDLVPVPPNLY-----GDF----------FTGDAYVI----LK----TVQLRNGILQYDLHYWLGNECS 68 (729)
T ss_dssp SSEEEEEEECSSSEEECCGGGT-----TEE----------ETTCEEEE----EE----EEECTTSCEEEEEEEEECTTCC
T ss_pred CCCeEEEEEcCCEEEeCChHhc-----Ccc----------cCCCEEEE----EE----eccCCCCccceEEEEEcCCCCC
Confidence 4566788888887777766543 222 47888888 22 442 21 3589999999876
Q ss_pred CC
Q psy185 82 PG 83 (95)
Q Consensus 82 Ps 83 (95)
..
T Consensus 69 ~d 70 (729)
T 1d0n_A 69 QD 70 (729)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=34.88 E-value=34 Score=26.54 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=31.4
Q ss_pred cceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCC
Q psy185 9 QTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPG 83 (95)
Q Consensus 9 ~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps 83 (95)
-.+|+=++|.-+.+|+..- | |=-+|+-|||=. +| -..-+.|||.|..++..
T Consensus 54 l~vWrIe~~~~~~vp~~~~---------G------~Fy~gD~YIvl~--------ty-~~~~~i~~W~G~~ss~d 104 (371)
T 3fg6_A 54 VEIWRVENNGRIQVDQNSY---------G------EFYGGDCYIILY--------TY-PRGQIIYTWQGANATRD 104 (371)
T ss_dssp EEEEEECSSSEEECCGGGT---------T------EECTTCEEEEEE--------EC-SSCEEEEEEECTTCCHH
T ss_pred EEEEEEECCeeeeCChHHc---------C------eEecCceEEEEE--------Ee-cCCeEEEEeeCCCCChh
Confidence 3567767776666665432 1 223788888721 22 13467999999988644
No 14
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=32.92 E-value=7.5 Score=27.71 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=35.4
Q ss_pred CccceeecccccceeecCCCcCCCCCcee---eccc---cccCc---ceeceEEEEeCCEEEEeceee----cCCCc-cE
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKP---IGKI---NSYHH---QVGGEVYAVNEYTLLLSQFNY----DGLGV-DT 72 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~---iG~l---~~~~h---~VsG~V~ivD~~Tl~I~nFsY----DG~gP-Da 72 (95)
||+..|.| .||+++......+.. .+.| ..... ...-.+-.+|.++++|++|-- |+++. --
T Consensus 3 ~~el~W~d------LiP~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~LdGk~VripGfvvPLe~~~~~~vte 76 (150)
T 4hsp_A 3 PRELTWSQ------LIPAGAPPAPAPLPIHDLANALSEAGPAASQQSPNAPVVKALDGIEAKLPGYIVPLEISEAGLVTE 76 (150)
T ss_dssp CEECCGGG------GSCTTSCCCCCSSCCHHHHHHHHHSCSSTTCSCTTCCCCGGGTTEEEEEEEEEEEEEECTTSEEEE
T ss_pred ceeccHHH------hCCCCCcccccccccccccccccccChhhhhccCCcccchhhCCCEEEeccEEEEeccCCCCcEEE
Confidence 67888987 578887633211110 0001 00011 123347788999999999975 66553 34
Q ss_pred EEEe
Q psy185 73 FFWA 76 (95)
Q Consensus 73 yFwv 76 (95)
||-|
T Consensus 77 FlLV 80 (150)
T 4hsp_A 77 FLLV 80 (150)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 15
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=29.67 E-value=38 Score=25.67 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=31.4
Q ss_pred cceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCC
Q psy185 9 QTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPG 83 (95)
Q Consensus 9 ~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps 83 (95)
-.+|.=+.|.-+.+|+..- .|=-+|+.|||=- |....+ ...-+.|||.|..+++.
T Consensus 9 ~~vwrIe~~~~~~v~~~~~---------------G~Fy~gD~YIvl~-ty~~~~----~~~~~i~~W~G~~ss~d 63 (344)
T 2fh1_A 9 KQIWRIEGSNKVPVDPATY---------------GQFYGGDSYIILY-NYRHGG----RQGQIIYNWQGAQSTQD 63 (344)
T ss_dssp EEEEEEETTEEEECCGGGT---------------TEEETTSEEEEEE-EEEETT----EEEEEEEEEECTTCCHH
T ss_pred EEEEEEcCCeEEECCHHHc---------------CeecCCCeEEEEE-EeecCC----CceEEEEEEecCCCCHh
Confidence 3567666665555553221 1223788888822 112111 13568999999988754
No 16
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=29.56 E-value=29 Score=23.40 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=30.9
Q ss_pred Cccceeecccc-cceeecCCCcCCCCCceeeccccccCcce--eceE
Q psy185 7 PRQTHWEDQLL-SSSSIPLLWAGEPYRGKPIGKINSYHHQV--GGEV 50 (95)
Q Consensus 7 ~~~~~~~d~~~-~~v~IP~~~~~~~p~g~~iG~l~~~~h~V--sG~V 50 (95)
|..|.|+.-.| .++.+|+++--.||..+++...-..|-.| .|.|
T Consensus 63 P~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~I 109 (136)
T 2a7l_A 63 APGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109 (136)
T ss_dssp CTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBB
T ss_pred CCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeE
Confidence 56677777664 58899999998899999987653223333 4554
No 17
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=29.31 E-value=11 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=0.0
Q ss_pred eceEEEEeCCEEEEeceeecC-CCccEEEEecCCCCCCCCce
Q psy185 47 GGEVYAVNEYTLLLSQFNYDG-LGVDTFFWAGTSPRPGPQGF 87 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG-~gPDayFwvG~~~~Ps~~G~ 87 (95)
+|+-|||-.+.. . .| ..-+.|||.|..++....|.
T Consensus 87 ~gD~YIvl~ty~-~-----~g~~~~~i~~W~G~~ss~de~g~ 122 (398)
T 3fg7_A 87 GGDCYLLLYTYL-I-----GEKQHYLLYVWQGSQASQDEITA 122 (398)
T ss_dssp ------------------------------------------
T ss_pred CCCeEEEEEEEe-c-----CCcceEEEEEEECCCCCHHHHHH
Confidence 888888754332 1 12 34589999999998766664
No 18
>3hd4_A Nucleoprotein; beta platform beta hairpin, golgi apparatus, nucleus, RNA-binding, transcription, transcriptio regulation, virion; 1.75A {Murine hepatitis virus}
Probab=27.83 E-value=44 Score=23.76 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=21.7
Q ss_pred ceeecCCCc----------cEEEEecCCC----CCCCCceEecC
Q psy185 62 QFNYDGLGV----------DTFFWAGTSP----RPGPQGFLVTD 91 (95)
Q Consensus 62 nFsYDG~gP----------DayFwvG~~~----~Ps~~G~kvPd 91 (95)
=|-|-|+|| |--|||+... +|+..|.+=|+
T Consensus 69 ~FYY~GTGP~adlkyg~~~~gV~WVa~~GA~t~~~~~~GtRnP~ 112 (139)
T 3hd4_A 69 YFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPS 112 (139)
T ss_dssp EEEETTCSTTTTCCTTCCCTTEEEEECTTSCTTSCCSSCCCCTT
T ss_pred EEEEecCCccccCcccccCCCeEEEecCCcccCcCCcccccCCC
Confidence 389999999 5578987643 36677777664
No 19
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=23.97 E-value=34 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=26.5
Q ss_pred Cccceee--cc-cccceeecCCCcCCCCCceeeccc
Q psy185 7 PRQTHWE--DQ-LLSSSSIPLLWAGEPYRGKPIGKI 39 (95)
Q Consensus 7 ~~~~~~~--d~-~~~~v~IP~~~~~~~p~g~~iG~l 39 (95)
|..|.|+ .- +..++.+|+++-..||..+++..+
T Consensus 59 p~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i 94 (167)
T 4ds2_A 59 PADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94 (167)
T ss_dssp CTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred CCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCc
Confidence 6677888 44 457999999999889999998764
No 20
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=22.54 E-value=39 Score=21.00 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=8.8
Q ss_pred CCccceeecccc
Q psy185 6 LPRQTHWEDQLL 17 (95)
Q Consensus 6 ~~~~~~~~d~~~ 17 (95)
.-++|.|+|...
T Consensus 33 ~t~~t~W~~P~~ 44 (88)
T 1tk7_A 33 KNRTTQWEDPRT 44 (88)
T ss_dssp TTTEEEEESCCC
T ss_pred CCCCeEeecccc
Confidence 357889999764
No 21
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding N-terminal domain, N protein, SARS-ORF9A, viral protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Probab=22.48 E-value=69 Score=22.69 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=20.0
Q ss_pred eeecCCCc----------cEEEEecCCCC---CC-CCceEecC
Q psy185 63 FNYDGLGV----------DTFFWAGTSPR---PG-PQGFLVTD 91 (95)
Q Consensus 63 FsYDG~gP----------DayFwvG~~~~---Ps-~~G~kvPd 91 (95)
|-|-|+|| |--|||+.... |. .-|.|=|+
T Consensus 75 FYYlGTGP~adlkyg~~~~gV~WVa~~GA~t~~~~~~GtR~pn 117 (138)
T 2ofz_A 75 FYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPN 117 (138)
T ss_dssp EEETTCSTTTTSCTTCCCTTEEEEECTTCBSSCCTTTCCBCTT
T ss_pred EEEeCCCccccCcccccCCCEEEEecCCcccccCCCccccCCC
Confidence 89999999 55789876543 44 45665553
No 22
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=21.31 E-value=44 Score=23.21 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=26.3
Q ss_pred Cccceeeccc-ccceeecCCCcCCCCCceeeccc
Q psy185 7 PRQTHWEDQL-LSSSSIPLLWAGEPYRGKPIGKI 39 (95)
Q Consensus 7 ~~~~~~~d~~-~~~v~IP~~~~~~~p~g~~iG~l 39 (95)
|..|.|+.-. ..++.+|+++--.||..+++..+
T Consensus 57 P~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i 90 (172)
T 2awf_A 57 PPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90 (172)
T ss_dssp CTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred CCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence 5667777655 45899999999899999998765
No 23
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus} SCOP: b.148.1.1
Probab=20.85 E-value=76 Score=22.94 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=18.8
Q ss_pred eeecCCCc----------cEEEEecCCCC---CC-CCceEec
Q psy185 63 FNYDGLGV----------DTFFWAGTSPR---PG-PQGFLVT 90 (95)
Q Consensus 63 FsYDG~gP----------DayFwvG~~~~---Ps-~~G~kvP 90 (95)
|-|-|+|| |--|||+.... |. .-|.|=|
T Consensus 88 FYYlGTGPhadlkyg~~~dgV~WVa~~GA~t~pt~~lGtR~p 129 (158)
T 1ssk_A 88 FYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNP 129 (158)
T ss_dssp EEEESSSSCCCSCSSCCCSSEEEECCSSCCCCCCCCCSCCCT
T ss_pred EEEeCCCccccCcccccCCCEEEEecCCcccccCCCccccCC
Confidence 89999999 55789876433 44 3555544
No 24
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=20.77 E-value=47 Score=22.11 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=26.0
Q ss_pred Cccceeeccc-ccceeecCCCcCCCCCceeecc
Q psy185 7 PRQTHWEDQL-LSSSSIPLLWAGEPYRGKPIGK 38 (95)
Q Consensus 7 ~~~~~~~d~~-~~~v~IP~~~~~~~p~g~~iG~ 38 (95)
|..|.|+.-. ..++.+|+++--.||..+++..
T Consensus 59 P~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 59 LENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp CTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred CCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 6677777766 4589999999988999999875
Done!