Query psy185
Match_columns 95
No_of_seqs 101 out of 121
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 17:54:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j72a1 d.109.1.1 (A:11-124) M 72.2 3.1 0.00022 26.3 4.7 58 6-86 8-65 (114)
2 d1j72a3 d.109.1.1 (A:241-347) 71.9 0.95 6.9E-05 27.3 2.0 27 46-83 37-63 (107)
3 d1j72a2 d.109.1.1 (A:125-240) 70.5 1.1 7.8E-05 27.8 2.0 24 46-82 36-59 (116)
4 d2fh1a2 d.109.1.1 (A:533-628) 62.4 2.5 0.00019 25.4 2.6 24 46-82 30-53 (96)
5 d2a7la1 d.20.1.1 (A:1-117) Ubi 60.9 2.2 0.00016 26.3 2.1 44 7-50 44-90 (117)
6 d1svya_ d.109.1.1 (A:) Severin 60.8 2.8 0.00021 24.9 2.6 23 46-81 28-50 (102)
7 d2fh1a3 d.109.1.1 (A:629-741) 60.5 3.7 0.00027 25.1 3.2 23 47-82 40-62 (113)
8 d2fh1a1 d.109.1.1 (A:412-532) 58.8 4.7 0.00034 25.5 3.5 54 10-84 10-64 (121)
9 d2vika_ d.109.1.1 (A:) Villin, 57.7 7.6 0.00055 24.6 4.5 58 6-86 15-75 (126)
10 d3cipg1 d.109.1.1 (G:2-125) Ge 48.5 16 0.0012 22.9 4.9 57 7-86 14-74 (124)
11 d1kcqa_ d.109.1.1 (A:) Gelsoli 47.4 6.2 0.00045 23.6 2.6 23 47-82 28-50 (104)
12 d1d0na3 d.109.1.1 (A:263-383) 42.6 4 0.00029 25.2 1.1 27 46-83 38-64 (121)
13 d2geca1 b.148.1.1 (A:23-160) N 34.8 14 0.001 24.6 2.9 43 50-92 55-114 (138)
14 d2f1la1 b.41.1.4 (A:101-175) 1 34.8 9.8 0.00071 21.7 1.9 30 32-61 15-51 (75)
15 d2a4da1 d.20.1.1 (A:82-220) Ub 26.8 16 0.0012 23.1 2.1 38 7-46 48-86 (139)
16 d2cmua1 d.126.1.6 (A:3-332) Pu 26.4 16 0.0012 26.3 2.2 21 47-67 85-105 (330)
17 d2fo3a1 d.20.1.1 (A:9-117) Put 25.2 16 0.0012 22.0 1.7 32 7-38 37-69 (109)
18 d1zbra1 d.126.1.6 (A:3-341) Pu 22.4 19 0.0014 25.9 2.0 21 47-67 86-106 (339)
19 d1y6la_ d.20.1.1 (A:) Ubiquiti 22.0 19 0.0014 22.4 1.7 34 6-39 40-74 (148)
20 d1c4zd_ d.20.1.1 (D:) Ubiquiti 21.4 26 0.0019 21.7 2.2 33 7-39 38-71 (144)
21 d1sska_ b.148.1.1 (A:) Nucleoc 21.0 35 0.0026 23.0 3.0 29 63-91 88-130 (158)
22 d1jata_ d.20.1.1 (A:) Ubiquiti 21.0 19 0.0014 22.7 1.6 33 7-39 42-75 (152)
No 1
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.22 E-value=3.1 Score=26.30 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=39.8
Q ss_pred CCccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCCCC
Q psy185 6 LPRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQ 85 (95)
Q Consensus 6 ~~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps~~ 85 (95)
-|.-++|.=++|.-+.||+..- |+ =-+|+-|||=. +|.-..-+.|||.|+.++....
T Consensus 8 ~~Gl~VWrIe~~~~~~v~~~~~-----G~----------Fy~gd~Yivl~--------~y~~~~~~i~fW~G~~ss~de~ 64 (114)
T d1j72a1 8 DPGLHVWRVEKLKPVPVAQENQ-----GV----------FFSGDSYLVLH--------NGPEEVSHLHLWIGQQSSRDEQ 64 (114)
T ss_dssp SSEEEEEEECSSSEEECCTTTT-----TE----------EETTSEEEEEE--------ECSSSCEEEEEEECTTSCHHHH
T ss_pred cCCeEEEEEcCCEEEECChHHc-----Ce----------eeCCCEEEEEE--------ecCCcceEEEEEEcCCCCHHHH
Confidence 4667899988888888887654 11 13667666522 4555566899999998875443
Q ss_pred c
Q psy185 86 G 86 (95)
Q Consensus 86 G 86 (95)
|
T Consensus 65 g 65 (114)
T d1j72a1 65 G 65 (114)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.92 E-value=0.95 Score=27.32 Aligned_cols=27 Identities=11% Similarity=0.450 Sum_probs=19.4
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPG 83 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps 83 (95)
-|+.|||||.. ....+|.|.|..+++.
T Consensus 37 ~s~dvfILD~~-----------~~~~iyvW~G~~s~~~ 63 (107)
T d1j72a3 37 ISDDCFVLDNG-----------LCGKIYIWKGRKANEK 63 (107)
T ss_dssp CTTSEEEEECG-----------GGSEEEEEECTTCCHH
T ss_pred CCCCEEEEecc-----------CCCEEEEEECCCCCHH
Confidence 48889999752 1224799999988753
No 3
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.48 E-value=1.1 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.428 Sum_probs=19.1
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
-|+.|||||.. ...|-|+|..+++
T Consensus 36 ~s~dvfILd~~-------------~~iyvW~G~~ss~ 59 (116)
T d1j72a2 36 NTGDCFILDLG-------------QNIFAWCGGKSNI 59 (116)
T ss_dssp BTTSEEEEEET-------------TEEEEEECTTCCH
T ss_pred CCCCEEEEECC-------------CEEEEEECCCCCH
Confidence 48899999843 4699999998864
No 4
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.43 E-value=2.5 Score=25.40 Aligned_cols=24 Identities=13% Similarity=0.498 Sum_probs=18.9
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
-|+.|+|+|.. ...|-|.|.++.+
T Consensus 30 ns~d~fILd~~-------------~~iyvW~G~~s~~ 53 (96)
T d2fh1a2 30 NSNDAFVLKTP-------------SAAYLWVGTGASE 53 (96)
T ss_dssp BTTSEEEEECS-------------SCEEEEECTTCCH
T ss_pred CCCCeEEEECC-------------CEEEEEECCCCCH
Confidence 38889999853 4689999998864
No 5
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.90 E-value=2.2 Score=26.30 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=32.3
Q ss_pred Cccceeeccc-ccceeecCCCcCCCCCceeeccccccCcce--eceE
Q psy185 7 PRQTHWEDQL-LSSSSIPLLWAGEPYRGKPIGKINSYHHQV--GGEV 50 (95)
Q Consensus 7 ~~~~~~~d~~-~~~v~IP~~~~~~~p~g~~iG~l~~~~h~V--sG~V 50 (95)
|..|.|++.. ..++.+|+++-..||..+++......|..| .|.|
T Consensus 44 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~~~G~i 90 (117)
T d2a7la1 44 APGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 90 (117)
T ss_dssp CTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBB
T ss_pred CCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCcCCCeE
Confidence 5566777665 568999999999999999987654455555 5554
No 6
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=60.77 E-value=2.8 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.390 Sum_probs=18.2
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPR 81 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~ 81 (95)
-|++|||+|.. ...|-|+|..++
T Consensus 28 ~s~dvfILd~~-------------~~iyvW~G~~s~ 50 (102)
T d1svya_ 28 NSGDCFLLDAG-------------LTIYQFNGSKSS 50 (102)
T ss_dssp BTTSEEEEECS-------------SEEEEEECTTCC
T ss_pred CCCCeEEEEcC-------------CEEEEEECCCCC
Confidence 38889999863 358999999875
No 7
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.45 E-value=3.7 Score=25.14 Aligned_cols=23 Identities=17% Similarity=0.576 Sum_probs=19.0
Q ss_pred eceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 47 GGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
|+.|||||.. ...|-|+|..+..
T Consensus 40 s~dvfILD~g-------------~~ifvW~G~~a~~ 62 (113)
T d2fh1a3 40 TDDVMLLDTW-------------DQVFVWVGKDSQE 62 (113)
T ss_dssp TTSEEEEECS-------------SCEEEEECTTCCH
T ss_pred CCceEEEECC-------------CEEEEEeCCCCCH
Confidence 7889999975 4699999988763
No 8
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.79 E-value=4.7 Score=25.47 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=32.8
Q ss_pred ceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecC-CCccEEEEecCCCCCCC
Q psy185 10 THWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDG-LGVDTFFWAGTSPRPGP 84 (95)
Q Consensus 10 ~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG-~gPDayFwvG~~~~Ps~ 84 (95)
.+|+=+++.-+.||.... .+=-+|+-|||=-+ +..+| .-.+.|||.|..+++..
T Consensus 10 ~VWrI~~~~~~~vp~~~~---------------G~Fy~gd~Yiv~~~------y~~~g~~~~~iy~W~G~~ss~~e 64 (121)
T d2fh1a1 10 QIWRIEGSNKVPVDPATY---------------GQFYGGDSYIILYN------YRHGGRQGQIIYNWQGAQSTQDE 64 (121)
T ss_dssp EEEEEETTEEEECCGGGT---------------TEEETTSEEEEEEE------EEETTEEEEEEEEEECTTCCHHH
T ss_pred EEEEEeCCEEeECCcccc---------------cEEeCCCeEEEEEE------EEcCCCceEEEEEEECCCCCHHH
Confidence 578777777777775433 11237777777311 12233 23479999999886543
No 9
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=57.74 E-value=7.6 Score=24.64 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=36.8
Q ss_pred CCccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeecCCC---ccEEEEecCCCCC
Q psy185 6 LPRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLG---VDTFFWAGTSPRP 82 (95)
Q Consensus 6 ~~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYDG~g---PDayFwvG~~~~P 82 (95)
+|.-.+|+=+++--+.||+..- .+=-+|+-|||= .+|--.+ -..|||.|..++.
T Consensus 15 ~~gl~VWrIe~~~~~~vp~~~~---------------G~Fysgd~Yivl--------~ty~~~~~~~~~iy~W~G~~ss~ 71 (126)
T d2vika_ 15 TPGIQIWRIENMEMVPVPTKSY---------------GNFYEGDCYVLL--------STRKTGSGFSYNIHYWLGKNSSQ 71 (126)
T ss_dssp CCEEEEEECGGGSCCEECTTTT---------------TCCCSSSCEEEE--------EEEECSSSEEEEEEEEECTTSCH
T ss_pred CCCEEEEEEeCCEEEECChHHc---------------CEEeCCCEEEEE--------EEEEcCCCcEEEEEEEecCCCCH
Confidence 4667788888887777776544 122367777763 2332222 2799999998865
Q ss_pred CCCc
Q psy185 83 GPQG 86 (95)
Q Consensus 83 s~~G 86 (95)
...|
T Consensus 72 ~e~~ 75 (126)
T d2vika_ 72 DEQG 75 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 10
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.54 E-value=16 Score=22.90 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=36.2
Q ss_pred CccceeecccccceeecCCCcCCCCCceeeccccccCcceeceEEEEeCCEEEEeceeec---C-CCccEEEEecCCCCC
Q psy185 7 PRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYD---G-LGVDTFFWAGTSPRP 82 (95)
Q Consensus 7 ~~~~~~~d~~~~~v~IP~~~~~~~p~g~~iG~l~~~~h~VsG~V~ivD~~Tl~I~nFsYD---G-~gPDayFwvG~~~~P 82 (95)
|--.+|+=+++--+.||+..- .+=-+|+-|||= .+|. | ...+.|||.|+.+++
T Consensus 14 ~Gl~VWrIe~~~~~~vp~~~~---------------G~Fy~gd~YIil--------~ty~~~~g~~~~~iy~W~G~~ss~ 70 (124)
T d3cipg1 14 PGLQIWRVEKFDLVPVPTNLY---------------GDFFTGDAYVIL--------KTVQLRNGNLQYDLHYWLGNECSQ 70 (124)
T ss_dssp SEEEEEEEETTEEEECCGGGT---------------TEEETTCEEEEE--------EEEECTTSCEEEEEEEEECTTCCH
T ss_pred CceEEEEEeCCEEEECCHHHc---------------cEEeCCCEEEEE--------EEEEcCCCCEeEEEEEEECCCCCh
Confidence 344778877777777776544 112378888872 2342 2 235899999999875
Q ss_pred CCCc
Q psy185 83 GPQG 86 (95)
Q Consensus 83 s~~G 86 (95)
...|
T Consensus 71 ~e~~ 74 (124)
T d3cipg1 71 DESG 74 (124)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5433
No 11
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.39 E-value=6.2 Score=23.61 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=18.1
Q ss_pred eceEEEEeCCEEEEeceeecCCCccEEEEecCCCCC
Q psy185 47 GGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRP 82 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~P 82 (95)
|+.|||+|.. ...|-|.|..+.+
T Consensus 28 s~dvfILd~~-------------~~iyvW~G~~s~~ 50 (104)
T d1kcqa_ 28 NGDCFILDLG-------------NNIHQWCGSNSNR 50 (104)
T ss_dssp TTSEEEEECS-------------SEEEEEECTTCCH
T ss_pred CCCeEEEEcC-------------CeEEEEECCcCCH
Confidence 7889999764 2479999998864
No 12
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]}
Probab=42.63 E-value=4 Score=25.16 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=18.4
Q ss_pred eeceEEEEeCCEEEEeceeecCCCccEEEEecCCCCCC
Q psy185 46 VGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPG 83 (95)
Q Consensus 46 VsG~V~ivD~~Tl~I~nFsYDG~gPDayFwvG~~~~Ps 83 (95)
-|+.|||+|... ..-.|.|+|..+.+.
T Consensus 38 ~s~dvfILD~~~-----------e~~IyvW~G~~ss~~ 64 (121)
T d1d0na3 38 RSEDCFILDHGK-----------DGKIFVWKGKQANME 64 (121)
T ss_dssp CTTSEEEEEEGG-----------GTEEEEEECTTSCHH
T ss_pred CCCCEEEEeeCC-----------CCEEEEEeCCCCCHH
Confidence 478899997532 112699999887653
No 13
>d2geca1 b.148.1.1 (A:23-160) Nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=34.80 E-value=14 Score=24.59 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=29.7
Q ss_pred EEEEeCCEEEEec---eeecCCCc----------cEEEEecCCC----CCCCCceEecCC
Q psy185 50 VYAVNEYTLLLSQ---FNYDGLGV----------DTFFWAGTSP----RPGPQGFLVTDE 92 (95)
Q Consensus 50 V~ivD~~Tl~I~n---FsYDG~gP----------DayFwvG~~~----~Ps~~G~kvPdE 92 (95)
....+.++..++. |-|-|+|| |--|||+... +|+..|.+=|++
T Consensus 55 ~r~~~G~r~~lp~~wyFYY~GTGP~adlkfg~~~dgV~WVa~~GA~t~~~~~~gtR~pn~ 114 (138)
T d2geca1 55 FKPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDK 114 (138)
T ss_dssp EECCSSSCEEEEEEEEEEETTCSTTTTSCTTCCCTTEEEEECTTCCTTCCCSCCCCCTTT
T ss_pred eecCCCceeeCCCceEEEEecCCccccccccccCCCEEEEecCCcccccCCcccccCCCc
Confidence 4555666666644 99999999 5578996533 367778776654
No 14
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.78 E-value=9.8 Score=21.67 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=21.3
Q ss_pred CceeeccccccCcceeceEEEEe-------CCEEEEe
Q psy185 32 RGKPIGKINSYHHQVGGEVYAVN-------EYTLLLS 61 (95)
Q Consensus 32 ~g~~iG~l~~~~h~VsG~V~ivD-------~~Tl~I~ 61 (95)
.++.+|.+....+.-+++++.|. .+++.|+
T Consensus 15 ~g~~lG~V~~v~~~ga~dll~I~~~~~~~~~keiLIP 51 (75)
T d2f1la1 15 GRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLP 51 (75)
T ss_dssp TSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEE
T ss_pred CCCEEEEEEEEcccCCccEEEEEeCCCCCCCeEEEEE
Confidence 46788888888777778888873 3456654
No 15
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Probab=26.82 E-value=16 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=31.0
Q ss_pred Cccceeecccc-cceeecCCCcCCCCCceeeccccccCcce
Q psy185 7 PRQTHWEDQLL-SSSSIPLLWAGEPYRGKPIGKINSYHHQV 46 (95)
Q Consensus 7 ~~~~~~~d~~~-~~v~IP~~~~~~~p~g~~iG~l~~~~h~V 46 (95)
|..|.|+...| ..+.+|+++--.||..+++..+ .|+.|
T Consensus 48 p~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i--~HpnV 86 (139)
T d2a4da1 48 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI--NMNGV 86 (139)
T ss_dssp CTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC--CCTTB
T ss_pred CCCCchhcCEEEEEEECCCCCCCCCCEEEEecCc--ccccC
Confidence 67888888875 7999999999999999998765 34455
No 16
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase {Helicobacter pylori J99 [TaxId: 85963]}
Probab=26.41 E-value=16 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.8
Q ss_pred eceEEEEeCCEEEEeceeecC
Q psy185 47 GGEVYAVNEYTLLLSQFNYDG 67 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG 67 (95)
.|++++.+...+.+.+|+|+|
T Consensus 85 ~GPi~v~~~g~~~~vdf~FN~ 105 (330)
T d2cmua1 85 FGAISIENHGVLECLDFGFNG 105 (330)
T ss_dssp HSCEEEEETTEEEEEEEECCH
T ss_pred ceeEEeccCCceEEEeccccc
Confidence 789999999999999999998
No 17
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Probab=25.18 E-value=16 Score=21.98 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=27.3
Q ss_pred Cccceeeccc-ccceeecCCCcCCCCCceeecc
Q psy185 7 PRQTHWEDQL-LSSSSIPLLWAGEPYRGKPIGK 38 (95)
Q Consensus 7 ~~~~~~~d~~-~~~v~IP~~~~~~~p~g~~iG~ 38 (95)
|..|.|++.. ...+.+|+++-..||.-+++..
T Consensus 37 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~ 69 (109)
T d2fo3a1 37 LENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 69 (109)
T ss_dssp CTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred CchhhhcCCCceEEEEeccccCCCCCeEEEEec
Confidence 6778888877 5699999999999999998874
No 18
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]}
Probab=22.42 E-value=19 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=19.6
Q ss_pred eceEEEEeCCEEEEeceeecC
Q psy185 47 GGEVYAVNEYTLLLSQFNYDG 67 (95)
Q Consensus 47 sG~V~ivD~~Tl~I~nFsYDG 67 (95)
.|+++++++..+.+.+|.|+|
T Consensus 86 ~GPifv~~~g~~~~vdf~FN~ 106 (339)
T d1zbra1 86 HGGISLLADGRPMIADFAFNG 106 (339)
T ss_dssp HSCEEEEETTEEEEEEEECCH
T ss_pred ccceEEEecCceeeecccccc
Confidence 789999999999999999998
No 19
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}
Probab=22.02 E-value=19 Score=22.38 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=28.0
Q ss_pred CCccceeeccc-ccceeecCCCcCCCCCceeeccc
Q psy185 6 LPRQTHWEDQL-LSSSSIPLLWAGEPYRGKPIGKI 39 (95)
Q Consensus 6 ~~~~~~~~d~~-~~~v~IP~~~~~~~p~g~~iG~l 39 (95)
.|++|.|+.-. ..++.+|+++-..||..+++..+
T Consensus 40 gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i 74 (148)
T d1y6la_ 40 GPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI 74 (148)
T ss_dssp CCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred CCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCC
Confidence 37788888877 56899999999999999988654
No 20
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}
Probab=21.44 E-value=26 Score=21.73 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=27.4
Q ss_pred Cccceeeccc-ccceeecCCCcCCCCCceeeccc
Q psy185 7 PRQTHWEDQL-LSSSSIPLLWAGEPYRGKPIGKI 39 (95)
Q Consensus 7 ~~~~~~~d~~-~~~v~IP~~~~~~~p~g~~iG~l 39 (95)
|..|.|++.. ..++.+|+++-..||..+++..+
T Consensus 38 p~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 71 (144)
T d1c4zd_ 38 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI 71 (144)
T ss_dssp CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCC
T ss_pred CCCcCccCCEEEEEEEecCcccCCCceeeccCCC
Confidence 7788888876 56999999999999999987553
No 21
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus, (SARS-CoV) [TaxId: 227859]}
Probab=21.03 E-value=35 Score=22.97 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=19.6
Q ss_pred eeecCCCc----------cEEEEecCCCC---CCC-CceEecC
Q psy185 63 FNYDGLGV----------DTFFWAGTSPR---PGP-QGFLVTD 91 (95)
Q Consensus 63 FsYDG~gP----------DayFwvG~~~~---Ps~-~G~kvPd 91 (95)
|-|-|+|| |--|||+.... |.+ -|.+=|+
T Consensus 88 FYY~GTGP~adlk~g~~~~gV~WVa~~GA~t~~~~~~GtR~pn 130 (158)
T d1sska_ 88 FYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPN 130 (158)
T ss_dssp EEEESSSSCCCSCSSCCCSSEEEECCSSCCCCCCCCCSCCCTT
T ss_pred EEEecCCccccccccccCCCEEEEecCCccccccccccccCCC
Confidence 89999999 55789976543 433 4665553
No 22
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=20.96 E-value=19 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.0
Q ss_pred Cccceeecccc-cceeecCCCcCCCCCceeeccc
Q psy185 7 PRQTHWEDQLL-SSSSIPLLWAGEPYRGKPIGKI 39 (95)
Q Consensus 7 ~~~~~~~d~~~-~~v~IP~~~~~~~p~g~~iG~l 39 (95)
|+.|.|++-.| ..+.+|+++-..||..+++..+
T Consensus 42 p~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i 75 (152)
T d1jata_ 42 PEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI 75 (152)
T ss_dssp CTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCC
T ss_pred CchhhhcCCEEEEEEecCccCCCCCcEEEecCCC
Confidence 78888888774 5999999999999999888765
Done!