RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy185
(95 letters)
>gnl|CDD|128929 smart00686, DM13, Domain present in fly proteins (CG14681,
CG12492, CG6217), worm H06A10.1 and Arabidopsis
thaliana MBG8.9.
Length = 108
Score = 64.7 bits (158), Expect = 3e-15
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 41 SYHHQV-GGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQ-GFLVTDEHGK 95
S H V V V+ TL + F+YDG G D +FW G RP + G V DE+G
Sbjct: 1 SLQHGVSSDPVEIVDAKTLRIPNFSYDGSGPDAYFWVGAGSRPDNEGGKKVPDEYGY 57
>gnl|CDD|220794 pfam10517, DM13, Electron transfer DM13. The DM13 domain is a
component of a novel electron-transfer system
potentially involved in oxidative modification of
animal cell-surface proteins. It contains a nearly
absolutely conserved cysteine, which could be involved
in a redox reaction, either as a naked thiol group or
through binding a prosthetic group like heme.
Length = 107
Score = 44.2 bits (105), Expect = 3e-07
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 44 HQVGGEVYAVNEYTLLLSQFNYDG-LGVDTFFWAGTSPRPGPQGFLV-TDEHGK 95
H G V V+ TLL+ +F++ G D + G P +GF DE+ +
Sbjct: 11 HWTSGTVTIVDGKTLLVLEFDFAPSGGPDYKVYLGPGFVPTEEGFKRPKDEYVE 64
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin. Mutations in presenilin-1 are a
major cause of early onset Alzheimer's disease. It has
been found that presenilin-1 binds to beta-catenin
in-vivo. This family also contains SPE proteins from
C.elegans.
Length = 403
Score = 27.5 bits (61), Expect = 1.1
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 51 YAVNEYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQGFLVT 90
++ T+ L +N+ +G+ W G P Q +L+T
Sbjct: 122 VPMDYPTVFLLIWNFGVVGMMCIHWKG--PLRLQQFYLIT 159
>gnl|CDD|150341 pfam09641, DUF2026, Protein of unknown function (DUF2026). This
protein of approx. 100 residues is found in bacteria. It
contains up to five alpha helices and up to seven beta
strands and is probably monomeric. Its function is
unknown. It is cited as a major prophage head protein,
so might generally be of viral origin.
Length = 204
Score = 26.0 bits (57), Expect = 3.3
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 61 SQFNYDGLGVDTFFWAGTSPRPGPQGFLVTDEHGK 95
SQ N D L V T W G P+ F +TDE G
Sbjct: 156 SQLNADLLNVATA-WYGKRPKRMAASFSMTDEKGT 189
>gnl|CDD|148810 pfam07412, Geminin, Geminin. This family contains the eukaryotic
protein geminin (approximately 200 residues long).
Geminin inhibits DNA replication by preventing the
incorporation of MCM complex into prereplication
complex, and is degraded during the mitotic phase of
the cell cycle. It has been proposed that geminin
inhibits DNA replication during S, G2, and M phases and
that geminin destruction at the metaphase-anaphase
transition permits replication in the succeeding cell
cycle.
Length = 200
Score = 25.6 bits (56), Expect = 3.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 3 GRALPRQTHWEDQLLSSSS 21
G+ L ++ W QL S +S
Sbjct: 54 GKGLSKRKLWNAQLTSGTS 72
>gnl|CDD|182228 PRK10082, PRK10082, cell density-dependent motility repressor;
Provisional.
Length = 303
Score = 25.8 bits (56), Expect = 3.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 17 LSSSSIPLL-WAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGV 70
L+ PLL ++ Y G+ I + + H ++ + V+ + LL Q DG G+
Sbjct: 190 LAQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVALDGCGI 244
>gnl|CDD|139914 PRK13854, PRK13854, type IV secretion system protein VirB3;
Provisional.
Length = 108
Score = 24.8 bits (54), Expect = 5.4
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 67 GLGVDTFFWAGTSPRPGP 84
G VD W G S P P
Sbjct: 80 GRSVDGQAWGGASVSPNP 97
>gnl|CDD|132863 cd07224, Pat_like, Patatin-like phospholipase. Patatin-like
phospholipase. This family consists of various patatin
glycoproteins from plants. The patatin protein accounts
for up to 40% of the total soluble protein in potato
tubers. Patatin is a storage protein, but it also has
the enzymatic activity of lipid acyl hydrolase,
catalysing the cleavage of fatty acids from membrane
lipids. Members of this family have been found also in
vertebrates.
Length = 233
Score = 25.0 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 14 DQLLSSSSIPLLWAGEP---YRGKP 35
D LL+S +IP A P +RGK
Sbjct: 127 DALLASCNIPGYLAPWPATMFRGKL 151
>gnl|CDD|225840 COG3303, NrfA, Formate-dependent nitrite reductase, periplasmic
cytochrome c552 subunit [Inorganic ion transport and
metabolism].
Length = 501
Score = 25.2 bits (55), Expect = 6.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 4 RALPRQTHWEDQLLSSSSIPLLWAGEPY 31
+A +QT D L + +LWAG P+
Sbjct: 76 KATSKQTERGDALAEDPRLVILWAGYPF 103
>gnl|CDD|188461 TIGR03946, viomycin_VioC, arginine beta-hydroxylase,
Fe(II)/alpha-ketoglutarate-dependent. Members of this
protein family are L-arginine beta-hydroxylase, members
of a broader family of enzymes dependent on Fe(II),
alpha-ketoglutarate, and molecular oxygen. Enzymes in
the broader family but excluded by this model include
clavaminate synthase, taurine dioxygenase, and
prolyl-4-hydroxylase [Cellular processes, Biosynthesis
of natural products].
Length = 333
Score = 24.8 bits (54), Expect = 9.0
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 6 LPRQTHWEDQLLSSSSIPLLWAGE----PYRGKPIG 37
LP + H L SSS L W E PYR +G
Sbjct: 122 LPIKGHEHYLLGSSSLQELGWHTEDAFHPYRADYVG 157
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 24.6 bits (54), Expect = 9.5
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 28 GEPYRGKPIGKIN 40
GEP G+P+ +I+
Sbjct: 357 GEPIFGQPLKEIS 369
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose kinases
(RhuK, also known as rhamnulokinase; EC 2.7.1.5), which
are encoded by the rhaB gene and catalyze the
ATP-dependent phosphorylation of L-rhamnulose to produce
L-rhamnulose-1-phosphate and ADP. Some uncharacterized
homologous sequences are also included in this
subfamily. The prototypical member of this subfamily is
Escherichia coli RhuK, which exists as a monomer
composed of two large domains. The ATP binding site is
located in the cleft between the two domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of divalent Mg2+ or Mn2+
is required for catalysis. Although an intramolecular
disulfide bridge is present in Rhuk, disulfide formation
is not important to the regulation of RhuK enzymatic
activity. Members of this subfamily belong to the FGGY
family of carbohydrate kinases.
Length = 440
Score = 24.8 bits (55), Expect = 9.6
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 7 PRQTHWEDQLLSSSSIPLLWAGEPYR-GKPIGKI 39
PR W+ +LL IP G +G +
Sbjct: 181 PRTRDWDTELLEKLGIPEELFPPLVEPGTVLGPL 214
>gnl|CDD|240095 cd04747, OYE_like_5_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 5. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 361
Score = 24.6 bits (54), Expect = 9.6
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 8/26 (30%)
Query: 70 VDTFFWAGTSPRPGPQGFLVTDEHGK 95
+D FFWAGT+ R D +G
Sbjct: 171 IDQFFWAGTNRR--------ADGYGG 188
>gnl|CDD|226068 COG3538, COG3538, Uncharacterized conserved protein [Function
unknown].
Length = 434
Score = 24.7 bits (54), Expect = 9.9
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 36 IGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTF 73
I + H GGE+YA + DGLG F
Sbjct: 270 IEQFGKMDHPKGGEIYA----------YEVDGLGNQLF 297
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.139 0.452
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,980,082
Number of extensions: 396799
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 17
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)