RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy185
         (95 letters)



>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp}
          PDB: 3o7h_A 3o7j_A* 3o7k_A
          Length = 189

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 KINSYHHQVGGEVYAVNEYTLLLSQFN 64
          KI+ +HH   GE      + + LSQFN
Sbjct: 5  KIHHHHHHSSGENLYFQGHMIALSQFN 31


>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2,
          protein structure initiative, northeast structural
          genomics consortium; HET: CIT; 1.35A {Bacillus
          subtilis}
          Length = 285

 Score = 25.0 bits (54), Expect = 4.2
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 43 HHQVGGEVYAVNEYTL 58
             + GEVY  +E  +
Sbjct: 53 EGYIYGEVYEADELCI 68


>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
           GMC oxidoredu PHBH fold, rossmann domain,
           oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
           ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
           2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
           3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
           3fdy_A* ...
          Length = 623

 Score = 25.2 bits (54), Expect = 4.9
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 4   RALPRQTHWEDQLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQF 63
           + + +  +     L S S+P+          P     S      G     +    L  Q 
Sbjct: 98  KNIDKFVNVIQGQLMSVSVPVNTLVVD-TLSPTSWQASTFFVRNGSNPEQDPLRNLSGQA 156

Query: 64  NYDGLGVDTFFWAGTSPRPGPQGF 87
               +G  +  W   +PR   +  
Sbjct: 157 VTRVVGGMSTAWTCATPRFDREQR 180


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 5.1
 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 40   NSYHHQV--GGEVYAVNEYTLLLSQFN 64
            N  + Q    G++ A++  T +L+   
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIK 1873


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0481    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,547,175
Number of extensions: 78850
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 10
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)