RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy185
         (95 letters)



>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
          [TaxId: 562]}
          Length = 161

 Score = 24.5 bits (53), Expect = 1.8
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 36 IGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGL-GVDTFFW 75
          I K+N    Q+  E+Y+   Y  + +  +Y    G   F  
Sbjct: 6  IEKLN---EQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR 43


>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 726

 Score = 24.5 bits (53), Expect = 2.8
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 38 KINSYHHQVGGEVYAVNEYTLLLSQFNY 65
          +I+ +H +   E   ++ Y   L++  Y
Sbjct: 62 QIDKWHRRRVIEPIDMDAYRQFLTEIGY 89


>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 23.8 bits (51), Expect = 3.9
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 15  QLLSSSSIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVN 54
               +  + L   G   R   I  +N  HH    + Y V 
Sbjct: 244 AWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVK 283


>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
          562]}
          Length = 720

 Score = 23.4 bits (50), Expect = 6.6
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 38 KINSYHHQVGGEVYAVNEYTLLLSQFNY 65
           ++ +H    G V     Y   L +  Y
Sbjct: 61 ALDEWHRSNPGPVKDKAAYKSFLRELGY 88


>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 181

 Score = 23.0 bits (48), Expect = 7.3
 Identities = 11/64 (17%), Positives = 19/64 (29%)

Query: 21  SIPLLWAGEPYRGKPIGKINSYHHQVGGEVYAVNEYTLLLSQFNYDGLGVDTFFWAGTSP 80
             P++  G   +     K              V +Y + ++  +     V   F A    
Sbjct: 93  GDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQG 152

Query: 81  RPGP 84
           RPG 
Sbjct: 153 RPGS 156


>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 202

 Score = 22.9 bits (49), Expect = 8.3
 Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 1/41 (2%)

Query: 55  EYTLLLSQFNYDGLGVDTFFWAGTSPRPGPQGFLVTDEHGK 95
                      D   V    W   SP+       VTD  GK
Sbjct: 148 FADWHKQAMIGDMASVAAN-WFRKSPKQMAASLSVTDRDGK 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,781
Number of extensions: 15028
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 7
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)