BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1854
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSW 102
+ + H +L+ + L DCT DG + KAHK V++ACS YF++ +
Sbjct: 3 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
F + + H +L + K + L D TI +GQ +AH+ V++ACS YF
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH 56
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSW 102
+ H +L+ + L DCT DG + KAHK V++ACS YF++ +
Sbjct: 7 FPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 40 LSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+S+ F + + H +L + K + L D T+ +GQ +AH+ V++ACS YF
Sbjct: 4 MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH 63
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 55 HCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
HC +L + K + L D T+ + + +AH+ V++ACS YF
Sbjct: 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 59 LLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWD 103
L G L + DC + GQ +AHK +++A SP F ++
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 59 LLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWD 103
L G L + DC + GQ +AHK +++A SP F ++
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFE 65
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 59 LLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWD 103
L G L + DC + GQ +AHK +++A SP F ++
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 205
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
++HC LL+ + L DCTI KAH+ V+++ S YF
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYF 48
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 49 RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
++++ H + +L L + L D I + +AHK V+ ACS F
Sbjct: 6 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
+++ H + +L L + L D I + +AHK V+ ACS F
Sbjct: 10 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 58
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 40 LSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
++ +D + + +H + +L L D I +G+ H+ V++ACS YF+
Sbjct: 3 MAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK 62
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
2.8a Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At
3.1a Resolution
Length = 297
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 75 CTIGADGQYLKAHKVVVSACSPYF 98
C GA G+ +AH+ V++A + YF
Sbjct: 56 CFGGAGGREFRAHRSVLAAATEYF 79
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
Q +++ N N++L+ D ++ G KAH+ V++A S YF+
Sbjct: 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human
Klhl11
Length = 279
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 75 CTIGADGQYLKAHKVVVSACSPYF 98
C GA G+ +AH+ V++A + YF
Sbjct: 38 CFGGAGGREFRAHRSVLAAATEYF 61
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ + +H + +L L D I +G+ H+ V++ACS YF+
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK 52
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 4 EENKILEDPKSILKLETPPPKRVVAIFEA--LKRETHWLSMKMDQQFRLKWNNHCNTLLQ 61
E N + +P S L T + VA+++ LK + H D+ F+++W+ H T+L
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 334
Query: 62 VFG 64
G
Sbjct: 335 SSG 337
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 4 EENKILEDPKSILKLETPPPKRVVAIFEA--LKRETHWLSMKMDQQFRLKWNNHCNTLLQ 61
E N + +P S L T + VA+++ LK + H D+ F+++W+ H T+L
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 62 VFG 64
G
Sbjct: 343 SSG 345
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 4 EENKILEDPKSILKLETPPPKRVVAIFEA--LKRETHWLSMKMDQQFRLKWNNHCNTLLQ 61
E N + +P S L T + VA+++ LK + H D+ F+++W+ H T+L
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 62 VFG 64
G
Sbjct: 341 SSG 343
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 4 EENKILEDPKSILKLETPPPKRVVAIFEA--LKRETHWLSMKMDQQFRLKWNNHCNTLLQ 61
E N + +P S L T + VA+++ LK + H D+ F+++W+ H T+L
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 62 VFG 64
G
Sbjct: 339 SSG 341
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 55 HCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
H LL+ + + D + DG+ + K +++A SPY +
Sbjct: 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 58
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain
Of Human Gigaxonin
Length = 144
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 55 HCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
H LL+ + + D + DG+ + K +++A SPY +
Sbjct: 30 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 74
>pdb|3VDH|A Chain A, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
pdb|3VDH|B Chain B, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
Length = 353
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 49 RLKWNNHC-NTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSP 96
+ W++ C NTL ++F L K T + IG G + ++ + VS SP
Sbjct: 249 KTTWDSECHNTLTEIFSALSKKFTTIPYIIGEYGTHGES-DISVSKSSP 296
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 4 EENKILEDPKSILKLETPPPKRVVAIFEA--LKRETHWLSMKMDQQFRLKWNNHCNTLLQ 61
E N + +P S L T + VA+++ LK + H D+ F++ W+ H T+L
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 62 VFG 64
G
Sbjct: 337 SSG 339
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 4 EENKILEDPKSILKLETPPPKRVVAIFEA--LKRETHWLSMKMDQQFRLKWNNHCNTLLQ 61
E N + +P S L T + VA+++ LK + H D+ F++ W+ H T+L
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 62 VFG 64
G
Sbjct: 337 SSG 339
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 LQEENKILEDPKSILKLETPPPKRVVAIFEALKRETHW 39
L E +LE PK++ + PPP+ F ++E W
Sbjct: 281 LLHEFGLLESPKALEEAPWPPPEGAFVGFVLSRKEPMW 318
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 LQEENKILEDPKSILKLETPPPKRVVAIFEALKRETHW 39
L E +LE PK++ + PPP+ F ++E W
Sbjct: 281 LLHEFGLLESPKALEEAPWPPPEGAFVGFVLSRKEPMW 318
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 55 HCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
H LL+ + + D + DG+ + K +++A SPY +
Sbjct: 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR 58
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 71 TLVDCTIGADGQYLKAHKVVVSACSPYFQVSW 102
TL D I D Q AH+ V++ S F++ +
Sbjct: 27 TLCDVVIMVDSQEFHAHRTVLACTSKMFEILF 58
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 71 TLVDCTIGADGQYLKAHKVVVSACSPYFQVSW 102
TL D I D Q AH+ V++ S F++ +
Sbjct: 26 TLCDVVIMVDSQEFHAHRTVLACTSKMFEILF 57
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ + H +LQ + D T+ G KAH V++ CS +FQ
Sbjct: 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,257,204
Number of Sequences: 62578
Number of extensions: 106136
Number of successful extensions: 314
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 32
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)