Query psy1854
Match_columns 110
No_of_seqs 140 out of 1164
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8h_A Transcription regulator 99.7 1E-17 3.5E-22 115.3 3.8 66 41-106 5-70 (138)
2 2ihc_A Transcription regulator 99.7 1.7E-17 5.9E-22 112.3 4.2 61 46-106 3-63 (124)
3 3fkc_A Transcriptional regulat 99.7 1.9E-17 6.4E-22 111.4 3.3 63 43-105 2-64 (116)
4 3ohu_A Transcription regulator 99.7 4.7E-17 1.6E-21 109.8 4.7 62 45-106 5-66 (125)
5 1r29_A B-cell lymphoma 6 prote 99.6 6.9E-17 2.3E-21 109.3 3.6 61 46-106 3-63 (127)
6 3b84_A Zinc finger and BTB dom 99.6 3.8E-17 1.3E-21 109.9 2.3 57 50-106 2-58 (119)
7 3ga1_A Nucleus accumbens-assoc 99.6 8.6E-17 3E-21 109.3 3.7 62 44-105 5-66 (129)
8 1buo_A POZ domain, protein (pr 99.6 6.7E-17 2.3E-21 108.8 2.9 59 47-105 3-61 (121)
9 2if5_A Zinc finger and BTB dom 99.6 8.2E-17 2.8E-21 107.7 3.0 58 49-106 2-59 (120)
10 2ppi_A Gigaxonin; BTB domain, 99.6 1.5E-16 5.1E-21 110.7 2.3 61 46-106 21-81 (144)
11 2yy9_A Zinc finger and BTB dom 99.6 3.3E-16 1.1E-20 107.6 3.4 56 51-106 4-59 (135)
12 2q81_A MIZ-1 protein; BTB/POZ 99.6 1.5E-16 5.3E-21 106.9 1.2 58 48-105 3-60 (119)
13 2vpk_A Myoneurin; transcriptio 99.6 3.9E-16 1.3E-20 104.0 2.3 54 52-105 2-55 (116)
14 3hve_A Gigaxonin; ubiquitin, c 99.6 9.6E-16 3.3E-20 114.2 3.3 62 45-106 4-65 (256)
15 3i3n_A Kelch-like protein 11; 99.5 3E-15 1E-19 112.9 2.6 61 46-106 6-69 (279)
16 3htm_A Speckle-type POZ protei 99.4 4.4E-14 1.5E-18 98.8 1.1 55 52-106 14-68 (172)
17 4eoz_A Speckle-type POZ protei 99.4 1.7E-13 5.9E-18 93.3 2.5 51 56-106 9-59 (145)
18 2vkp_A BTB/POZ domain-containi 99.3 1.9E-13 6.5E-18 89.5 1.2 42 65-106 1-46 (109)
19 3m5b_A Zinc finger and BTB dom 99.3 6.1E-13 2.1E-17 90.0 2.2 52 47-100 7-58 (119)
20 3hqi_A Speckle-type POZ protei 99.2 8.2E-12 2.8E-16 95.0 3.1 50 57-106 159-208 (312)
21 4ajy_C Transcription elongatio 97.5 3.1E-05 1.1E-09 50.2 2.1 29 75-104 4-33 (97)
22 2ast_A S-phase kinase-associat 97.0 0.00025 8.7E-09 49.6 1.8 29 75-104 3-32 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 94.8 0.011 3.9E-07 40.4 1.9 29 75-104 4-33 (141)
24 1hv2_A Elongin C, ELC1; protei 91.6 0.095 3.2E-06 33.8 2.2 29 75-104 6-35 (99)
25 2fnj_C Transcription elongatio 91.6 0.071 2.4E-06 34.2 1.6 29 75-104 3-32 (96)
26 2p1m_A SKP1-like protein 1A; F 91.5 0.01 3.5E-07 41.5 -2.7 29 75-104 6-35 (160)
27 3drz_A BTB/POZ domain-containi 73.6 1.9 6.5E-05 27.7 2.2 31 75-105 8-39 (107)
28 1vcb_B Protein (elongin C); tu 66.5 2.8 9.6E-05 27.4 1.8 30 74-104 18-48 (112)
29 3v7d_A Suppressor of kinetocho 65.3 2.7 9.1E-05 29.3 1.6 30 74-104 8-38 (169)
30 1f45_B Interleukin-12 alpha ch 43.9 3.6 0.00012 30.0 -0.7 33 6-38 121-153 (197)
31 4h4g_A (3R)-hydroxymyristoyl-[ 30.3 55 0.0019 22.1 3.7 38 70-108 28-66 (160)
32 4i83_A 3-hydroxyacyl-[acyl-car 24.0 77 0.0026 20.8 3.5 38 70-108 25-63 (152)
33 3drx_A BTB/POZ domain-containi 20.7 49 0.0017 23.9 2.0 31 75-105 14-45 (202)
34 1q8d_A GDNF family receptor al 20.0 20 0.00067 23.7 -0.2 13 96-108 88-100 (108)
No 1
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.69 E-value=1e-17 Score=115.28 Aligned_cols=66 Identities=27% Similarity=0.414 Sum_probs=61.0
Q ss_pred ccccCceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 41 SMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 41 ~~~~~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
+.+....+.++|+.|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~ 70 (138)
T 2z8h_A 5 SVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT 70 (138)
T ss_dssp CCCTTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC
T ss_pred CCCCCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCC
Confidence 334457888999999999999999999999999999999999999999999999999999999865
No 2
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=112.29 Aligned_cols=61 Identities=30% Similarity=0.436 Sum_probs=58.0
Q ss_pred ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
+.+.++|+.|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~ 63 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA 63 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCC
Confidence 5788999999999999999999999999999999999999999999999999999999864
No 3
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.67 E-value=1.9e-17 Score=111.42 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=58.4
Q ss_pred ccCceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854 43 KMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV 105 (110)
Q Consensus 43 ~~~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~ 105 (110)
++.+.+.+.+++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~ 64 (116)
T 3fkc_A 2 ESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA 64 (116)
T ss_dssp --CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC
T ss_pred CcCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence 456788899999999999999999999999999999999999999999999999999999875
No 4
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.66 E-value=4.7e-17 Score=109.80 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=58.8
Q ss_pred CceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 45 DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 45 ~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
.....+++..|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+.+
T Consensus 5 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~ 66 (125)
T 3ohu_A 5 SPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQT 66 (125)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCC
T ss_pred CcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCC
Confidence 46778999999999999999999999999999999999999999999999999999998865
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.64 E-value=6.9e-17 Score=109.25 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=56.4
Q ss_pred ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
....++|++|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~ 63 (127)
T 1r29_A 3 ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL 63 (127)
T ss_dssp --CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTT
T ss_pred CCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCc
Confidence 4556889999999999999999999999999999999999999999999999999999765
No 6
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.64 E-value=3.8e-17 Score=109.88 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=54.2
Q ss_pred eecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 50 ~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
++|++|...+++.++++|+++.+|||+|.+||+.|+|||.|||++|+||++||.+++
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~ 58 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS 58 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC
Confidence 567899999999999999999999999999999999999999999999999998764
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.64 E-value=8.6e-17 Score=109.34 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=57.8
Q ss_pred cCceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854 44 MDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV 105 (110)
Q Consensus 44 ~~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~ 105 (110)
+.+.+.++|++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~ 66 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS 66 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC
Confidence 45788999999999999999999999999999999999999999999999999999999764
No 8
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.63 E-value=6.7e-17 Score=108.83 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=56.2
Q ss_pred eeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854 47 QFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV 105 (110)
Q Consensus 47 ~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~ 105 (110)
.+.+++++|...+++.++++|+++.+|||++.++|+.|+|||.|||++|+||++||.++
T Consensus 3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~ 61 (121)
T 1buo_A 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN 61 (121)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC
T ss_pred ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC
Confidence 46788999999999999999999999999999999999999999999999999999875
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.63 E-value=8.2e-17 Score=107.74 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=53.9
Q ss_pred EeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 49 RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 49 ~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
.++|++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~ 59 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGA 59 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC--
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCc
Confidence 4678999999999999999999999999999999999999999999999999998754
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=110.69 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=55.8
Q ss_pred ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
+.+.+.+++|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~ 81 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP 81 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCC
Confidence 5678899999999999999999999999999999999999999999999999999998754
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.60 E-value=3.3e-16 Score=107.63 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=49.4
Q ss_pred ecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 51 KWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 51 ~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
.+.+|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~ 59 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT 59 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC
Confidence 45789999999999999999999999999999999999999999999999998754
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.59 E-value=1.5e-16 Score=106.90 Aligned_cols=58 Identities=31% Similarity=0.528 Sum_probs=53.0
Q ss_pred eEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV 105 (110)
Q Consensus 48 ~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~ 105 (110)
..+.+++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||++.
T Consensus 3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~ 60 (119)
T 2q81_A 3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ 60 (119)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence 4466788999999999999999999999999999999999999999999999999763
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.58 E-value=3.9e-16 Score=104.03 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=51.1
Q ss_pred cCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854 52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV 105 (110)
Q Consensus 52 ~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~ 105 (110)
+++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+.
T Consensus 2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~ 55 (116)
T 2vpk_A 2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST 55 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC
Confidence 357899999999999999999999999999999999999999999999999874
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.56 E-value=9.6e-16 Score=114.19 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=49.5
Q ss_pred CceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 45 DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 45 ~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
+....+.++.|...+++.++.+|+++.+|||+|.+||+.|+|||.|||++|+||++||++++
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~ 65 (256)
T 3hve_A 4 AEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP 65 (256)
T ss_dssp ------CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC----
T ss_pred CCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCC
Confidence 45577889999999999999999999999999999999999999999999999999998765
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.52 E-value=3e-15 Score=112.89 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=55.7
Q ss_pred ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeC---CeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGAD---GQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~---g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
....|.+++|...+++.++++|+++.+|||+|.+| |+.|+|||.|||++|+||++||++++
T Consensus 6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~ 69 (279)
T 3i3n_A 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQF 69 (279)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--
T ss_pred cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCC
Confidence 46789999999999999999999999999999998 99999999999999999999998764
No 16
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.39 E-value=4.4e-14 Score=98.75 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=49.8
Q ss_pred cCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 52 ~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
+..+...+...+.++++++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus 14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~ 68 (172)
T 3htm_A 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM 68 (172)
T ss_dssp SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCc
Confidence 3455667889999999999999999999999999999999999999999998753
No 17
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=93.35 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 56 CNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 56 ~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
...+...++++++++.+|||+|.++|+.|+|||.||+++|+||++||.+++
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~ 59 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM 59 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCC
Confidence 346788999999999999999999999999999999999999999998753
No 18
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.33 E-value=1.9e-13 Score=89.52 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.9
Q ss_pred hhhcCCCcceEEEEeCC----eEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 65 NLLKTETLVDCTIGADG----QYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 65 ~lr~~~~~~DV~l~v~g----~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
++++++.+|||+|.++| +.|+|||.|||++|+||++||.+++
T Consensus 1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~ 46 (109)
T 2vkp_A 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDL 46 (109)
T ss_dssp CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---
T ss_pred CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCc
Confidence 36789999999999988 8999999999999999999998764
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.30 E-value=6.1e-13 Score=89.99 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=44.5
Q ss_pred eeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHH
Q psy1854 47 QFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQV 100 (110)
Q Consensus 47 ~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~ 100 (110)
......+.+...+++.++ |.++.+|||+|.++|+.|+|||.|||++|+||++
T Consensus 7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~ 58 (119)
T 3m5b_A 7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR 58 (119)
T ss_dssp CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC
T ss_pred CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc
Confidence 344455567778888886 7789999999999999999999999999999985
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.18 E-value=8.2e-12 Score=95.05 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854 57 NTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF 106 (110)
Q Consensus 57 ~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p 106 (110)
..+.+.+..+++++.++||+|.++|+.|+|||.|||++|+||++||.+.+
T Consensus 159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~ 208 (312)
T 3hqi_A 159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM 208 (312)
T ss_dssp CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC--
T ss_pred chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCc
Confidence 35788899999999999999999999999999999999999999998753
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=97.54 E-value=3.1e-05 Score=50.22 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=26.1
Q ss_pred EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
|+|+. +|+.|.+||.| |++|+||++||.+
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~ 33 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG 33 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHh
Confidence 56765 89999999999 9999999999986
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=96.98 E-value=0.00025 Score=49.59 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=26.6
Q ss_pred EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
|+|++ +|+.|.+|+.| |++|+||++||.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~ 32 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED 32 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTS
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHh
Confidence 77875 89999999999 9999999999986
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=94.82 E-value=0.011 Score=40.44 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=26.1
Q ss_pred EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
|+|+. +|+.|.+|+.+ |.+|.||++||.+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~ 33 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED 33 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHH
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHh
Confidence 67777 88999999998 8999999999974
No 24
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=91.62 E-value=0.095 Score=33.81 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=26.1
Q ss_pred EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
|+|+. +|+.|.+++.+ |..|.++++||.+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~ 35 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEG 35 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHS
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhc
Confidence 67776 89999999997 9999999999976
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=91.59 E-value=0.071 Score=34.19 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=25.7
Q ss_pred EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
|+|+. +|+.|.+++.+ |..|.++++||.+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~ 32 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG 32 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHc
Confidence 66776 89999999997 8999999999975
No 26
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=91.54 E-value=0.01 Score=41.45 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=12.5
Q ss_pred EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
|+|+. +|+.|.+|+.+ |.+|.||++||.+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~ 35 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVED 35 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC-----
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHc
Confidence 66765 89999999998 8999999999975
No 27
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=73.56 E-value=1.9 Score=27.73 Aligned_cols=31 Identities=6% Similarity=0.177 Sum_probs=26.7
Q ss_pred EEEEeCCeEEEeEEEeeccCC-HHHHHhhCCC
Q psy1854 75 CTIGADGQYLKAHKVVVSACS-PYFQVSWDVV 105 (110)
Q Consensus 75 V~l~v~g~~f~aHk~VLAa~S-~yFr~mf~~~ 105 (110)
|+|-|||+.|...+..|+... ++|.+||.+.
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~ 39 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQAD 39 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTC
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcC
Confidence 678899999999999998875 6788998764
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=66.49 E-value=2.8 Score=27.40 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=25.6
Q ss_pred eEEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 74 DCTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 74 DV~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
-|+|+. +|+.|.+.+. .|..|..++.||.+
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~ 48 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSG 48 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHh
Confidence 477774 8999999999 57899999999974
No 29
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=65.30 E-value=2.7 Score=29.34 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=25.6
Q ss_pred eEEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854 74 DCTIGA-DGQYLKAHKVVVSACSPYFQVSWDV 104 (110)
Q Consensus 74 DV~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~ 104 (110)
-|+|+. +|+.|.+++.+ |..|.+++.|+.+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~ 38 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLND 38 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHh
Confidence 477766 79999999998 8889999999964
No 30
>1f45_B Interleukin-12 alpha chain; cytokine, cytokine-cytokine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B*
Probab=43.86 E-value=3.6 Score=30.00 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.6
Q ss_pred ccccCCCcceeeeeCCChhHHHHHHhhhhcccc
Q psy1854 6 NKILEDPKSILKLETPPPKRVVAIFEALKRETH 38 (110)
Q Consensus 6 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 38 (110)
++++.||..++.++.+.-.-+..+|++++..++
T Consensus 121 ~~l~~dp~~Qi~Ld~~mL~aIdeLMQaln~~~~ 153 (197)
T 1f45_B 121 AKLLMDPKRQIFLDQNMLAVIDELMQALNFNSE 153 (197)
T ss_dssp HHHTTSTTCCCSHHHHHHHHHHHHHHHC-----
T ss_pred hhhcCChhhhhhcchhHHHHHHHHHHHhCCCCc
Confidence 357899999999999999999999999986655
No 31
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=30.33 E-value=55 Score=22.13 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCcceEEEEe-CCeEEEeEEEeeccCCHHHHHhhCCCCcc
Q psy1854 70 ETLVDCTIGA-DGQYLKAHKVVVSACSPYFQVSWDVVFCM 108 (110)
Q Consensus 70 ~~~~DV~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~~p~~ 108 (110)
=.+.|=++.+ .|+.+.|.|.| +...+||...|-++|.|
T Consensus 28 fLlvDrv~~~~~~~~i~a~k~V-t~~e~ff~gHFp~~Pvm 66 (160)
T 4h4g_A 28 ILLVDRVLELEPHKSIKALKNV-TVNEPFFTGHFPKRPVM 66 (160)
T ss_dssp SCCCCEEEEEETTTEEEEEEEC-CTTSGGGGTSCTTSCCC
T ss_pred eEEEEEEEEecCCCEEEEEEEe-ccCcccccCCCCCCCcC
Confidence 3678877766 57788888876 66689999999999987
No 32
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=23.97 E-value=77 Score=20.85 Aligned_cols=38 Identities=26% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCcceEEEEeC-CeEEEeEEEeeccCCHHHHHhhCCCCcc
Q psy1854 70 ETLVDCTIGAD-GQYLKAHKVVVSACSPYFQVSWDVVFCM 108 (110)
Q Consensus 70 ~~~~DV~l~v~-g~~f~aHk~VLAa~S~yFr~mf~~~p~~ 108 (110)
=.+-|=++.++ |+.+.|.+.| ....+||+..|.++|.+
T Consensus 25 ~llvDrv~~~~~g~~i~~~~~v-~~~~~ff~gHFp~~Pv~ 63 (152)
T 4i83_A 25 FLQLDRITAFEPMKTLTAIKNV-SINEPQFQGHFPDLPVM 63 (152)
T ss_dssp SCCCCEEEEEETTTEEEEEEEC-CSSSGGGGTSCTTSCCC
T ss_pred eEEEEEEEEEcCCCEEEEEEEe-CCCchhccCCCCCCCcC
Confidence 36788777775 6888888765 56789999999999986
No 33
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=20.66 E-value=49 Score=23.85 Aligned_cols=31 Identities=6% Similarity=0.177 Sum_probs=25.4
Q ss_pred EEEEeCCeEEEeEEEeeccCC-HHHHHhhCCC
Q psy1854 75 CTIGADGQYLKAHKVVVSACS-PYFQVSWDVV 105 (110)
Q Consensus 75 V~l~v~g~~f~aHk~VLAa~S-~yFr~mf~~~ 105 (110)
|+|-|||+.|...+..|.... ++|.+||.+.
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~ 45 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQAD 45 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCC
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCc
Confidence 677899999999999998764 5788888764
No 34
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=20.04 E-value=20 Score=23.71 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=11.3
Q ss_pred HHHHHhhCCCCcc
Q psy1854 96 PYFQVSWDVVFCM 108 (110)
Q Consensus 96 ~yFr~mf~~~p~~ 108 (110)
.-|..+|+.|+|+
T Consensus 88 e~fl~~Ft~N~CL 100 (108)
T 1q8d_A 88 LKFLNFFKDNTCL 100 (108)
T ss_dssp HHHHHHHHSCHHH
T ss_pred HHHHHHHccCHHH
Confidence 5688999999996
Done!