RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1854
(110 letters)
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 60.7 bits (148), Expect = 2e-13
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 40 LSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
+S+ F + + H +L + K + L D T+ +GQ +AH+ V++ACS YF
Sbjct: 4 MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 60.0 bits (146), Expect = 2e-13
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
M+ + + +LL D T+ + + +AHK ++SA S YF
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFH 58
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 60.0 bits (146), Expect = 5e-13
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 43 KMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
Q + H LL+ + + D + DG+ + K +++A SPY
Sbjct: 18 LYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 59.2 bits (144), Expect = 7e-13
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 41 SMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ Q +++ N N++L+ D ++ G KAH+ V++A S YF+
Sbjct: 2 PLGSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 59.2 bits (144), Expect = 7e-13
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
++++ H + +L L + L D I + +AHK V+ ACS F
Sbjct: 5 SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 58.8 bits (143), Expect = 1e-12
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
F + + H +L + K + L D TI +GQ +AH+ V++ACS YF
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 58.4 bits (142), Expect = 2e-12
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ + HC +L + K + L D T+ + + +AH+ V++ACS YF
Sbjct: 6 PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW 59
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 58.0 bits (141), Expect = 2e-12
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
++HC LL+ + L DCTI KAH+ V+++ S YF
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFG 49
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 57.6 bits (140), Expect = 3e-12
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ H +LQ + D T+ G KAH V++ CS +FQ
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 52
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 56.8 bits (138), Expect = 4e-12
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
+ + +H + +L L D I +G+ H+ V++ACS YF
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 56.1 bits (136), Expect = 1e-11
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ H +LQ + D T+ G KAH V++ CS +FQ
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 51
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 56.1 bits (136), Expect = 1e-11
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+H LL + TL D I D Q AH+ V++ S F+
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 55.3 bits (134), Expect = 2e-11
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 54 NHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
H +L+ + L DCT DG + KAHK V++ACS YF+
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK 54
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 56.4 bits (137), Expect = 5e-11
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
H LL+ + + D + DG+ + K +++A SPY
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 57
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 52.2 bits (126), Expect = 5e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 58 TLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
L G L + DC + GQ +AHK +++A SP F
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 52.6 bits (127), Expect = 6e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 58 TLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
L G L + DC + GQ +AHK +++A SP F
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 53.4 bits (129), Expect = 7e-10
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 51 KWNNHCNTLLQVFGNLLKTETLVDCTI---GADGQYLKAHKVVVSACSPYF 98
+ ++HC+ L + D T+ GA G+ +AH+ V++A + YF
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 48.4 bits (116), Expect = 9e-09
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 54 NHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
+ L+Q L D I Q AH +V++ S
Sbjct: 14 YGSDRLVQ--LAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLG 57
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 48.0 bits (114), Expect = 5e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 59 LLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
L G L + DC + GQ +AHK +++A SP F
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 44.1 bits (105), Expect = 4e-07
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 65 NLLKTETLVDCTI----GADGQYLKAHKVVVSACSPYF 98
++ E + D + + AHK V++ S F
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.17
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 11/31 (35%)
Query: 4 EENKI--LEDPKSILKLETP---PPKRVVAI 29
E+ + L+ + LKL P +AI
Sbjct: 18 EKQALKKLQ---ASLKLYADDSAP---ALAI 42
>3n0k_A Serine protease inhibitor 1; proteinase inhibitor, hydrolase
inhibitor; 1.80A {Coprinopsis cinerea}
Length = 150
Score = 28.7 bits (63), Expect = 0.27
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 23 PKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLL--QVFGNLL 67
PKR+ + E W+ K D + L ++F +LL
Sbjct: 31 PKRIRVLPEDNNSGNSWVVEKDDDAYILYCKGAPVAPQEGKLFADLL 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.1
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 3 QEENKILEDPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQV 62
+LE + +L P +K H + ++ + + K + N LL V
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLL-V 249
Query: 63 FGNLLKTETL----VDCTI 77
N+ + + C I
Sbjct: 250 LLNVQNAKAWNAFNLSCKI 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 1.8
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 8 ILEDPKSILKLET----PPPKRV----VAIFEALKRE 36
K +L T P + A FE LK +
Sbjct: 1718 TFRSEKGLLSA-TQFTQP---ALTLMEKAAFEDLKSK 1750
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription
regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A
3cro_L*
Length = 71
Score = 25.0 bits (55), Expect = 2.7
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 12 PKSILKLE---TPPPKRVVAIFEALKRETHWL 40
+SI +E T P+ + I AL + WL
Sbjct: 30 QQSIQLIEAGVTKRPRFLFEIAMALNCDPVWL 61
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434}
SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L*
1r63_A 2r63_A 1sq8_A
Length = 69
Score = 24.5 bits (54), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 12 PKSILKLE---TPPPKRVVAIFEALKRETHWL 40
+SI +LE T P+ + + AL WL
Sbjct: 28 QQSIEQLENGKTKRPRFLPELASALGVSVDWL 59
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 24.8 bits (53), Expect = 7.3
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 13 KSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLK 68
K + KL+ P K V + L S K+ Q RL+ + ++ ++
Sbjct: 435 KQVQKLKEPSIKCVDMVVSELTSTIRKCSEKLQQYPRLR-----EEMERIVTTHIR 485
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 24.8 bits (55), Expect = 7.5
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 17 KLETPPPKRVVAIFEALKR 35
+L+ R+ I +A +
Sbjct: 427 ELKDAGADRIWYIADAFRA 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.432
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,713,956
Number of extensions: 83433
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 31
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)