RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1854
         (110 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 51.7 bits (123), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 49 RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          ++++  H + +L     L   + L D  I    +  +AHK V+ ACS  F 
Sbjct: 2  QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY 52


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 51.2 bits (122), Expect = 3e-10
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 49  RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCM 108
           +L+  +H   LL     +    TL D  I  D Q   AH+ V++  S  F++ +      
Sbjct: 5   QLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH 64


>d2ay0a1 a.43.1.11 (A:3-45) Bifunctional protein putA {Escherichia
          coli [TaxId: 562]}
          Length = 43

 Score = 23.2 bits (50), Expect = 2.4
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 16 LKLETPPPKRVVAIFEALKRETHWL 40
          + L+    +R+ +    + R  HWL
Sbjct: 6  VMLDDATRERIKSAATRIDRTPHWL 30


>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
           {Acidianus ambivalens [TaxId: 2283]}
          Length = 307

 Score = 24.8 bits (54), Expect = 2.4
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 6/38 (15%)

Query: 11  DPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQF 48
            P  I  +  P  KRVVA  E      H +    ++QF
Sbjct: 144 KPLDIPVISQPYGKRVVAFAE------HSVIPGKEKQF 175


>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
          Length = 65

 Score = 22.5 bits (48), Expect = 6.4
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 15 ILKLETPPPKRVVAIFEALKRETHWL 40
          I    T  P+ +  I  AL  +  WL
Sbjct: 36 IEAGVTKRPRFLFEIAMALNCDPVWL 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,686
Number of extensions: 16867
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 10
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)