BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1858
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/105 (79%), Positives = 98/105 (93%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/105 (78%), Positives = 99/105 (94%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME+LFGR+ TPEEMLR+NQRALNKAMR++DRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 99/105 (94%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME+LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 94/105 (89%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM++VK
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y KKF+ M+AN+QAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKG 105
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 86/103 (83%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+LFG++ TP+E+LR+NQR LNK+MR++DRE+ ++ QEKK+I DIKKMAK+GQM S KIM
Sbjct: 2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
AKDLVRTR + +KF MK +QAVSL+IQTL+S AMA++M G
Sbjct: 62 AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKG 104
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 80/103 (77%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
EW+FG+ +TP+E L+KNQRAL + R+L+REK+ +E Q+KKL+++IKK AK GQ+ + K
Sbjct: 4 FEWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAK 63
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+ AKDLVRTR Y +KF MKA +QA+SL+IQ +RS + M SM
Sbjct: 64 VQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSM 106
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 84/105 (80%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M +FG++ TP E+LR+N+R L+K++R+++RE+Q ++ QEKKLI +IKK AK+GQM +VK
Sbjct: 2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+MAKDL+RTR +KF +K+ +Q VSL+IQTL+S AM ++M G
Sbjct: 62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKG 106
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 69/103 (66%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
WLFG +P+E LR +QR+L +A R+LDRE+ ++Q+E+ LI +IK AK G + +I
Sbjct: 6 WLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQ 65
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
A+DL+R R KK M K +QA+SL++QT+R+ M SM G
Sbjct: 66 ARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRG 108
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M + G K TPE+ L+ ++R L+K R++DRE ++ E++ I IK++AK G+ + K
Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
MA DLV+ R ++ K + AVS K T+++ MA++M
Sbjct: 61 RMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAM 103
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+F +K TP++ LR ++R + A R ++RE ++ +EK+L+A+IKK AK G + KI+A
Sbjct: 3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+ LVR R+ +A I+ V+ Q L + +++ M G
Sbjct: 63 RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKG 104
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 61/102 (59%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+F +K P E+LR+++R + +A R +++E ++ +EKKL+ +IK+ AK G + KI+A
Sbjct: 3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+ L+R R+ +A ++ ++ Q + + ++A M G
Sbjct: 63 RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQG 104
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QE++L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 58/90 (64%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+ F +K TPEE+++K +R L + R LD + + ++ QEKK + IK+ K G +S K +
Sbjct: 2 FSFLKKPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTL 61
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQT 92
AK++V +RK ++ KA + +VS+++Q+
Sbjct: 62 AKEIVNSRKAKERIYTAKAQMNSVSMQLQS 91
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++R+ + L R + R++ +E+QEK+L +IKKMAK G ++ +
Sbjct: 1 MASLFKKK-TVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++R+ + L R + R++ +E+QEK+L +IKKMAK G ++ +
Sbjct: 1 MASLFKKK-TVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ + L R + R++ +E+QEK+L +IKKMAK G ++ K
Sbjct: 1 MTSLFKKK-TVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAM 102
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T +++++ + L R + R++ +E+QEK+L +IKKMAK G ++ K
Sbjct: 1 MASLFKKK-TVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102
>sp|O14296|VPS24_SCHPO Vacuolar protein sorting-associated protein 24
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps24 PE=3 SV=1
Length = 231
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+ FG TP+E RK Q + K R LDR+ H++ KK +K++AK+ + +++I+
Sbjct: 7 YFFGP--TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRIL 64
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKI 90
AK++ R ++ K+ KA + ++SL++
Sbjct: 65 AKEIARANRHGKRLAESKALLGSLSLQL 92
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus
GN=Chmp3 PE=1 SV=3
Length = 223
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ E +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK+++R+RK K KA++ +V
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSV 87
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3
PE=1 SV=3
Length = 224
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ E +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK+++R+RK K KA++ +V
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSV 87
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3
PE=2 SV=3
Length = 222
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK+++R+RK K KA++ +V
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSV 87
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK+++R+RK K KA++ +V
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSV 87
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK+++R+RK K KA++ +V
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSV 87
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3
PE=1 SV=3
Length = 222
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK+++R+RK K KA++ +V
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSV 87
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++++K+ IK+ AK+G E+ I
Sbjct: 3 LFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVI 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK++V+++K K KA++ +V
Sbjct: 63 LAKEVVQSKKAVNKLYASKAHMNSV 87
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++++K+ IK+ AK+G E+ I
Sbjct: 3 LFGKTQERPPKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVI 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV 86
+AK++V ++K K KA++ +V
Sbjct: 63 LAKEVVHSKKAVNKLYASKAHMNSV 87
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++E+K+ IK AK+GQ + I
Sbjct: 3 LFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCII 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSL----KIQTLRSQNAMADS 102
+AK+++++++ K KA + +V L ++ LR A+ S
Sbjct: 63 LAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKS 107
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 52 KEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
++G ME +I A++ +R + + F+ M A + AV+ ++QT + N + SM G
Sbjct: 41 QKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAG 94
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 25 AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQ 84
A ++L+R + +++EK A IKK ++G ME +I A++ +R + A F+ M A +
Sbjct: 14 AAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVD 73
Query: 85 AVSLKIQTLRSQNAMADSMIG 105
AV+ ++QT + + SM G
Sbjct: 74 AVAARVQTAVTMGKVTKSMAG 94
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 53 EGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+G ME +I A++ +R + A F+ M A + AV+ ++QT + + SM G
Sbjct: 42 KGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAG 94
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 53 EGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+G ME +I A++ +R + A F+ M A + AV+ ++QT + + SM G
Sbjct: 42 KGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAG 94
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 15/95 (15%)
Query: 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYA 73
+LRKN R + K++R+L ++ + ++LI KK AK+ + +V++ AK+L + K
Sbjct: 23 VLRKNGRNIEKSLREL----TVLQNKTQQLI---KKSAKKNDVRTVRLYAKELYQINKQY 75
Query: 74 KKFMMMKANIQAVSLKI------QTLRSQNAMADS 102
+ +A + +V +KI TL +Q MADS
Sbjct: 76 DRMYTSRAQLDSVRMKIDEAIRMNTLSNQ--MADS 108
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 25 AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQ 84
A ++L+R + +++EK A IKK ++G ME +I A++ +R + F+ M A +
Sbjct: 14 AAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVD 73
Query: 85 AVSLKIQTLRSQNAMADSMIG 105
AV+ ++QT + + SM G
Sbjct: 74 AVAARVQTAVTMGKVTKSMAG 94
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 54 GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
G E +I A++ +R + A F+ M A + AV+ ++QT + + SM G
Sbjct: 43 GNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAG 94
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 38/64 (59%)
Query: 29 LDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSL 88
L+++ + EQ EK +KK ++G M+ +I A++ +R + + ++ + + I AV+
Sbjct: 15 LEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVAS 74
Query: 89 KIQT 92
+++T
Sbjct: 75 RVET 78
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 54 GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG---QLETT 110
G E +I A++ +R + F+ M A + AV+ ++QT + + SM G ++TT
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTT 102
Query: 111 L 111
L
Sbjct: 103 L 103
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 54 GQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
G E +I A++ +R + F+ M A + AV+ ++QT + + SM G
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAG 94
>sp|A3LPW2|FYV10_PICST Protein FYV10 OS=Scheffersomyces stipitis (strain ATCC 58785 /
CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=FYV10 PE=3
SV=2
Length = 511
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70
P E+++KN + + K + E+Q+K++ D+ K+ K + + A L R
Sbjct: 20 PTELIKKNFKTIQKLV----------EKQKKQMTDDVAKIKKNPNIPT----AMKLAMVR 65
Query: 71 KYAKKFMMMKANIQAVSLKIQTLRSQ 96
K K F + +QA K + LRS+
Sbjct: 66 KSIKSFEGFQKKLQASIAKDEELRSR 91
>sp|P34926|MAP1A_RAT Microtubule-associated protein 1A OS=Rattus norvegicus GN=Map1a PE=1
SV=1
Length = 2774
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRK 71
E++L + AL K LD+E + EQ+++ L D + K +E +K+ V +K
Sbjct: 1508 EQVLEQKDWALGKEGETLDQEARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKETVLDQK 1567
Query: 72 YAKK 75
A+K
Sbjct: 1568 SAEK 1571
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 43/81 (53%)
Query: 25 AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQ 84
A + L+++ ++E+ +KK +G E +I A + +R ++ + + + + I
Sbjct: 14 AAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIRKQQESLNLLKLSSRID 73
Query: 85 AVSLKIQTLRSQNAMADSMIG 105
AVS ++QT + A++ +M G
Sbjct: 74 AVSSRLQTAVTMRAVSGNMAG 94
>sp|Q9XUM6|BAT34_CAEEL BTB and MATH domain-containing protein 34 OS=Caenorhabditis elegans
GN=bath-34 PE=4 SV=1
Length = 384
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 16 RKNQRALNKAMRDLDREKQHMEQQEKKLIAD---IKKMAKEGQMESVKIMAKD 65
+KN+ LNK++ +L +K+ ++ E LI+ I+ MAKE +S+ M K+
Sbjct: 106 KKNESLLNKSLNELKFQKEQLKYVEATLISQQKLIEHMAKELTGKSISDMVKN 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.128 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,644,686
Number of Sequences: 539616
Number of extensions: 992087
Number of successful extensions: 9162
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 8889
Number of HSP's gapped (non-prelim): 443
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)