Query psy1858
Match_columns 114
No_of_seqs 117 out of 470
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:05:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230|consensus 100.0 6.7E-34 1.5E-38 213.6 15.8 112 1-113 1-112 (224)
2 KOG3229|consensus 100.0 7E-33 1.5E-37 209.3 15.3 110 4-113 3-114 (227)
3 KOG3231|consensus 100.0 1.7E-28 3.6E-33 181.2 13.2 111 1-113 1-111 (208)
4 KOG3232|consensus 99.9 2.8E-22 6E-27 148.8 14.1 100 13-112 5-104 (203)
5 PF03357 Snf7: Snf7; InterPro 99.5 2.8E-13 6E-18 97.4 10.2 97 17-113 1-97 (171)
6 PTZ00464 SNF-7-like protein; P 98.8 2.2E-07 4.8E-12 71.1 12.8 112 1-113 1-117 (211)
7 PTZ00446 vacuolar sorting prot 98.3 6.3E-05 1.4E-09 56.9 14.2 109 1-113 1-123 (191)
8 COG5491 VPS24 Conserved protei 98.2 3.7E-05 7.9E-10 58.8 10.9 83 27-111 7-89 (204)
9 KOG2911|consensus 97.7 0.0012 2.6E-08 55.3 12.2 97 17-113 233-329 (439)
10 KOG1656|consensus 97.4 0.0055 1.2E-07 47.1 11.4 102 1-113 4-117 (221)
11 KOG1655|consensus 96.7 0.088 1.9E-06 40.4 12.3 111 1-112 1-118 (218)
12 COG5491 VPS24 Conserved protei 96.6 0.02 4.4E-07 43.8 8.4 77 36-112 5-83 (204)
13 PRK10698 phage shock protein P 95.7 0.68 1.5E-05 35.5 14.7 99 7-105 21-158 (222)
14 PF04012 PspA_IM30: PspA/IM30 95.6 0.7 1.5E-05 34.7 15.6 69 8-76 21-103 (221)
15 PF03357 Snf7: Snf7; InterPro 94.7 0.34 7.3E-06 34.4 8.2 98 14-111 5-102 (171)
16 TIGR02977 phageshock_pspA phag 87.4 11 0.00023 28.6 16.1 56 7-62 21-90 (219)
17 COG1842 PspA Phage shock prote 86.9 13 0.00027 28.8 13.1 85 23-107 51-160 (225)
18 PF03398 Ist1: Regulator of Vp 86.8 10 0.00022 27.7 11.1 75 19-93 1-75 (165)
19 PRK09720 cybC cytochrome b562; 85.6 6.2 0.00013 27.1 6.9 51 12-77 49-99 (100)
20 PF08569 Mo25: Mo25-like; Int 84.7 9.5 0.00021 31.1 8.8 69 1-69 1-75 (335)
21 PRK15058 cytochrome b562; Prov 84.0 8.8 0.00019 27.5 7.3 50 13-77 78-127 (128)
22 KOG3231|consensus 83.6 17 0.00037 27.5 10.1 29 15-43 20-48 (208)
23 KOG2910|consensus 75.1 36 0.00078 26.2 15.2 62 1-63 1-62 (209)
24 PRK05431 seryl-tRNA synthetase 74.0 52 0.0011 27.5 10.7 67 20-92 31-98 (425)
25 PTZ00464 SNF-7-like protein; P 71.6 43 0.00094 25.6 15.3 103 7-110 12-121 (211)
26 PTZ00446 vacuolar sorting prot 70.0 46 0.00099 25.2 13.7 104 8-111 21-128 (191)
27 PF07361 Cytochrom_B562: Cytoc 69.4 15 0.00034 24.8 5.0 32 46-77 71-102 (103)
28 TIGR00414 serS seryl-tRNA synt 62.3 92 0.002 26.0 10.6 70 18-93 31-102 (418)
29 PF02403 Seryl_tRNA_N: Seryl-t 60.9 46 0.00099 22.0 10.2 68 20-93 32-100 (108)
30 COG3783 CybC Soluble cytochrom 60.0 26 0.00057 24.0 4.6 31 45-75 67-97 (100)
31 KOG3230|consensus 54.0 1E+02 0.0022 23.9 12.7 92 15-111 21-117 (224)
32 PF08134 cIII: cIII protein fa 52.5 30 0.00065 20.1 3.4 22 9-30 17-38 (44)
33 PF11068 YlqD: YlqD protein; 49.9 91 0.002 22.1 7.3 32 17-48 20-51 (131)
34 cd00632 Prefoldin_beta Prefold 41.1 96 0.0021 20.6 5.1 41 10-50 63-103 (105)
35 PF08946 Osmo_CC: Osmosensory 40.6 79 0.0017 18.8 4.0 36 10-45 5-40 (46)
36 KOG3229|consensus 39.0 1.9E+02 0.0041 22.6 13.5 33 12-44 20-52 (227)
37 PF15178 TOM_sub5: Mitochondri 37.7 76 0.0016 19.1 3.6 25 5-29 7-31 (51)
38 PF04799 Fzo_mitofusin: fzo-li 36.6 1.8E+02 0.0039 21.8 6.6 32 13-44 116-147 (171)
39 KOG4743|consensus 34.4 52 0.0011 25.2 3.2 19 4-23 22-40 (195)
40 COG5625 Predicted transcriptio 33.8 66 0.0014 22.4 3.4 31 4-35 79-109 (113)
41 PF04977 DivIC: Septum formati 33.7 1.1E+02 0.0024 18.5 6.4 43 20-64 20-62 (80)
42 PRK11637 AmiB activator; Provi 33.6 2.7E+02 0.0058 23.0 7.6 40 18-57 101-140 (428)
43 PF02416 MttA_Hcf106: mttA/Hcf 33.0 79 0.0017 18.8 3.3 33 4-41 16-48 (53)
44 PRK09343 prefoldin subunit bet 32.7 1.3E+02 0.0028 20.8 4.8 44 13-56 74-117 (121)
45 COG1382 GimC Prefoldin, chaper 32.0 1.8E+02 0.004 20.5 5.7 46 8-53 68-113 (119)
46 KOG1760|consensus 31.9 1.9E+02 0.0042 20.7 5.5 43 3-45 74-116 (131)
47 PF02234 CDI: Cyclin-dependent 31.4 38 0.00082 20.1 1.7 20 4-24 3-22 (51)
48 PF04508 Pox_A_type_inc: Viral 31.1 72 0.0016 16.2 2.4 17 21-37 5-21 (23)
49 KOG2027|consensus 30.2 3.3E+02 0.0072 22.9 8.1 62 37-98 14-75 (388)
50 PRK04098 sec-independent trans 29.8 2.3E+02 0.005 20.9 6.2 8 4-11 19-26 (158)
51 PF06632 XRCC4: DNA double-str 29.1 3.3E+02 0.0071 22.4 11.5 80 9-88 122-208 (342)
52 PLN02320 seryl-tRNA synthetase 29.1 3.9E+02 0.0084 23.3 10.3 66 22-93 98-163 (502)
53 PRK00191 tatA twin arginine tr 29.0 30 0.00066 23.0 1.0 31 4-34 18-50 (84)
54 PF04521 Viral_P18: ssRNA posi 28.4 2E+02 0.0042 20.4 5.1 39 26-64 74-112 (120)
55 PF03087 DUF241: Arabidopsis p 27.4 2.1E+02 0.0045 21.9 5.6 41 12-52 59-100 (231)
56 PF06305 DUF1049: Protein of u 27.0 1E+02 0.0022 18.4 3.2 20 21-40 45-64 (68)
57 PF05816 TelA: Toxic anion res 26.4 3.4E+02 0.0074 21.8 10.9 47 2-48 76-133 (333)
58 PF01865 PhoU_div: Protein of 25.7 2.6E+02 0.0057 20.4 5.7 52 3-54 1-70 (214)
59 PF06152 Phage_min_cap2: Phage 25.3 3.8E+02 0.0083 21.9 8.8 43 9-60 299-341 (361)
60 PF11286 DUF3087: Protein of u 25.3 81 0.0018 23.5 2.8 19 45-63 97-115 (165)
61 KOG0840|consensus 25.1 1.1E+02 0.0024 24.6 3.7 27 53-79 195-221 (275)
62 PF05812 Herpes_BLRF2: Herpesv 23.3 1.8E+02 0.004 20.5 4.2 28 25-52 4-31 (118)
63 PRK07857 hypothetical protein; 22.7 2.2E+02 0.0047 19.6 4.4 34 20-53 31-64 (106)
64 PHA03162 hypothetical protein; 22.6 1.3E+02 0.0028 21.8 3.3 29 26-54 15-43 (135)
65 PF10234 Cluap1: Clusterin-ass 22.3 3.7E+02 0.0079 21.5 6.2 39 12-50 164-202 (267)
66 PRK00888 ftsB cell division pr 22.2 2.6E+02 0.0056 18.9 6.8 31 20-50 30-60 (105)
67 COG1826 TatA Sec-independent p 21.6 1.9E+02 0.004 19.1 3.8 8 4-11 19-26 (94)
68 PF10368 YkyA: Putative cell-w 21.1 3.2E+02 0.007 20.6 5.5 69 9-77 14-84 (204)
69 KOG0150|consensus 21.1 4.8E+02 0.01 21.6 7.1 51 13-67 31-81 (336)
70 PF06179 Med22: Surfeit locus 21.1 20 0.00043 24.1 -1.0 34 3-36 65-98 (109)
71 TIGR01791 CM_archaeal chorisma 20.1 2.4E+02 0.0052 17.7 4.4 28 21-48 3-30 (83)
72 PF12269 zf-CpG_bind_C: CpG bi 20.0 4.4E+02 0.0095 20.7 6.5 42 9-50 21-62 (236)
No 1
>KOG3230|consensus
Probab=100.00 E-value=6.7e-34 Score=213.65 Aligned_cols=112 Identities=64% Similarity=0.913 Sum_probs=110.6
Q ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMK 80 (114)
Q Consensus 1 m~~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~k 80 (114)
|+ +||+++||.|.||+++|.|.++.|+||||+.++|-+||++..+||+.||.|+++++||+||+|||+|+++.+|+.++
T Consensus 1 m~-lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~k 79 (224)
T KOG3230|consen 1 MD-LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMK 79 (224)
T ss_pred CC-cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 81 ANIQAVSLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 81 aql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
|||++|++++|+..|+..|+.+|+++|+.|..|
T Consensus 80 aqiqaVSl~iQtlkss~sma~aMkGaTkam~~M 112 (224)
T KOG3230|consen 80 AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGM 112 (224)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 2
>KOG3229|consensus
Probab=100.00 E-value=7e-33 Score=209.31 Aligned_cols=110 Identities=29% Similarity=0.476 Sum_probs=106.8
Q ss_pred cccC--CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1858 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81 (114)
Q Consensus 4 ~f~~--k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~ka 81 (114)
+||. +|||+|++|+|++.||++.|+|||+++.|+++|.+++..||++||+||.++|+||||++|+.|+++.|+|.++|
T Consensus 3 l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 3 LFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5554 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 82 NIQAVSLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 82 ql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
||+||+|+++.+.++..++|+|++||++|++|
T Consensus 83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v 114 (227)
T KOG3229|consen 83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAV 114 (227)
T ss_pred HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 99999999999999999999999999999876
No 3
>KOG3231|consensus
Probab=99.96 E-value=1.7e-28 Score=181.21 Aligned_cols=111 Identities=33% Similarity=0.508 Sum_probs=108.2
Q ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMK 80 (114)
Q Consensus 1 m~~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~k 80 (114)
++ +|++ |||+|+.|+++|+||++.|+|+|+++++|++|++|+.+||+.|+.||.|+||+|||+||.+|+|.++-|.++
T Consensus 1 ~n-iF~K-ktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s 78 (208)
T KOG3231|consen 1 AN-IFKK-KTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVS 78 (208)
T ss_pred CC-cccC-CCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 35 8987 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 81 ANIQAVSLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 81 aql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
+++.|++.|-..+.|+.+|+++|+.++++|.+|
T Consensus 79 ~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~am 111 (208)
T KOG3231|consen 79 SKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAM 111 (208)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 999999999999999999999999999999986
No 4
>KOG3232|consensus
Probab=99.89 E-value=2.8e-22 Score=148.77 Aligned_cols=100 Identities=23% Similarity=0.393 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQT 92 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~ 92 (114)
.-|...-+.|+++.++|+|+..+|+++||..+.++|+|+++||+|.|||||.+.||.+++.-+|+++.|++++|++++||
T Consensus 5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT 84 (203)
T KOG3232|consen 5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT 84 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy1858 93 LRSQNAMADSMIGQLETTLP 112 (114)
Q Consensus 93 ~~s~~~~~~sm~~~t~~M~~ 112 (114)
+.+|.+|+++|.+++++|++
T Consensus 85 avtmr~Vt~sM~gVvK~md~ 104 (203)
T KOG3232|consen 85 AVTMRKVTKSMAGVVKSMDS 104 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.49 E-value=2.8e-13 Score=97.39 Aligned_cols=97 Identities=27% Similarity=0.346 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1858 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (114)
Q Consensus 17 ~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~~s~ 96 (114)
++.+.|+.+.+.|++++.+|+.+.+++..++++++++|+...|++|+++.++.+++..+++....+|++|..+++++.++
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q psy1858 97 NAMADSMIGQLETTLPI 113 (114)
Q Consensus 97 ~~~~~sm~~~t~~M~~~ 113 (114)
..|..+|..++++|+.+
T Consensus 81 ~~v~~al~~~~~~Lk~~ 97 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKI 97 (171)
T ss_dssp HHHSSS----SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998754
No 6
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.78 E-value=2.2e-07 Score=71.07 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=90.0
Q ss_pred CcccccCCC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----HHH
Q psy1858 1 MEWLFGRKI-TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKY----AKK 75 (114)
Q Consensus 1 m~~~f~~k~-~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~----~~r 75 (114)
|++|||+++ .|.--+.+....|+.....|++.+.+|+.|..+.+..|++.-..++ ...|.-|..+.|.++. ..+
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999643 4555677777999999999999999999988888877776533222 2367788888887764 446
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 76 FMMMKANIQAVSLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 76 ~~~~kaql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
++....+|..+...+..+..+..+..+|+.++++|+.+
T Consensus 80 l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~ 117 (211)
T PTZ00464 80 MMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQ 117 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999864
No 7
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.28 E-value=6.3e-05 Score=56.93 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=67.7
Q ss_pred CcccccCC-CCH--HHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRK-ITP--EEM-------LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70 (114)
Q Consensus 1 m~~~f~~k-~~p--~E~-------lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R 70 (114)
|.|+||++ +.| .+. ..+---.|+.+.-.|+.-...|+..-.+.....|+.++.|+... |..+.+.+
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrK 76 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRK 76 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHH
Confidence 67899974 445 111 22222334444444444444444444444444567778888654 66666665
Q ss_pred HH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 71 KY----AKKFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 71 ~~----~~r~~~~kaql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
+. ..+++.....|+.+...+..+..+..+..+|+.++++|+.+
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~ 123 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKL 123 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44555666667777788888888899999999999988764
No 8
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.17 E-value=3.7e-05 Score=58.78 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIGQ 106 (114)
Q Consensus 27 R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~~s~~~~~~sm~~~ 106 (114)
++.++....+....++.+..+++-++ +....+++++.+.+.+++..|++..+++|+++.+.++...+|.++++.|.++
T Consensus 7 ~~~~k~~~~~k~~~~~~~~~~n~~~~--~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a 84 (204)
T COG5491 7 RQAKKLVRELKQEAKKGQVLLNEIAK--KAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKA 84 (204)
T ss_pred HHHHHhhhhhhhHhHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444444455555555555544 6778999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q psy1858 107 LETTL 111 (114)
Q Consensus 107 t~~M~ 111 (114)
+..|.
T Consensus 85 ~~~mn 89 (204)
T COG5491 85 AMYMN 89 (204)
T ss_pred HHHHH
Confidence 99986
No 9
>KOG2911|consensus
Probab=97.66 E-value=0.0012 Score=55.30 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1858 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQ 96 (114)
Q Consensus 17 ~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~~s~ 96 (114)
-.--.|..+.-.|.+++..|+++-++...+.+.+.+.|....|..|++..-++=+-..+....--+|.+|-.++.++.++
T Consensus 233 ~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~n 312 (439)
T KOG2911|consen 233 GSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTN 312 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q psy1858 97 NAMADSMIGQLETTLPI 113 (114)
Q Consensus 97 ~~~~~sm~~~t~~M~~~ 113 (114)
.=|-.+++..+.+|+++
T Consensus 313 kvvl~AyksGs~alK~i 329 (439)
T KOG2911|consen 313 KVVLQAYKSGSEALKAI 329 (439)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 99999999999999875
No 10
>KOG1656|consensus
Probab=97.35 E-value=0.0055 Score=47.07 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=62.3
Q ss_pred CcccccCC-----CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRK-----ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK 75 (114)
Q Consensus 1 m~~~f~~k-----~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r 75 (114)
||||||+. |||+|-+-..+-.+. =-+.+-+--|+++..++...|++.-.. =|.+|-+..+-++...+
T Consensus 4 ~~~~FG~~k~~~~~t~~eaI~kLrEtee-------mL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~ 75 (221)
T KOG1656|consen 4 FSRLFGGMKQEAKPTPQEAIQKLRETEE-------MLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEK 75 (221)
T ss_pred HHHHhCcccccCCCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 57899863 789876554433222 123455666778888888766665444 45667776665554443
Q ss_pred HHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccc
Q psy1858 76 FMMMKANIQAVSLKI-------QTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 76 ~~~~kaql~sv~~~l-------~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
. =+||+++.+.+ ..+.++..+-.+|+..+++|+++
T Consensus 76 q---L~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~ 117 (221)
T KOG1656|consen 76 Q---LAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAA 117 (221)
T ss_pred H---HHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence 3 34555555443 44556667777788888777764
No 11
>KOG1655|consensus
Probab=96.65 E-value=0.088 Score=40.41 Aligned_cols=111 Identities=18% Similarity=0.292 Sum_probs=84.8
Q ss_pred CcccccCC--CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHH--
Q psy1858 1 MEWLFGRK--ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ-MESVKIMAKDLVRTRKYAKK-- 75 (114)
Q Consensus 1 m~~~f~~k--~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~-~~~arilAk~lVr~R~~~~r-- 75 (114)
|+-+||.+ +.|---|.++.-.+.+..-.+|.-|.+|+.+=-++..+|++. ..|. ..+.|--|=.+++.++..+.
T Consensus 1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~ 79 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQK 79 (218)
T ss_pred CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 67799964 346677999999999999999999999999999999999988 4454 56778777777777765543
Q ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1858 76 --FMMMKANIQAVSLKIQTLRSQNAMADSMIGQLETTLP 112 (114)
Q Consensus 76 --~~~~kaql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~ 112 (114)
|+.-+=.|+-+++..+...-+.....+|+...+.|+.
T Consensus 80 d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~ 118 (218)
T KOG1655|consen 80 DSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKK 118 (218)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444666666666667777777778888877764
No 12
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=96.55 E-value=0.02 Score=43.81 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1858 36 MEQQEKKLIADIKKMAKEGQMESVKI--MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLETTLP 112 (114)
Q Consensus 36 le~eEkk~~~~IKkaakkg~~~~ari--lAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~~s~~~~~~sm~~~t~~M~~ 112 (114)
++++-++.-..+|..+++|.....++ ++..-.++-++.-++..+.++|+++.++||+..++.....+|.++++.|..
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~ 83 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAK 83 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 45555566666666666666544333 444444444445599999999999999999999999999999999998864
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=95.71 E-value=0.68 Score=35.54 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-------HHHH
Q psy1858 7 RKITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI-------MAKD 65 (114)
Q Consensus 7 ~k~~p~E~lr~~kr~lr~--------------~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~ari-------lAk~ 65 (114)
+-.||...++..-+.|+. ..+.++|+...++..-.+....-..|..+|+-+-|+- ++..
T Consensus 21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~ 100 (222)
T PRK10698 21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDL 100 (222)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 346888677766666654 3566777888888888888888889999999999988 7777
Q ss_pred HHHHHHHHH------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 66 LVRTRKYAK------------------KFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105 (114)
Q Consensus 66 lVr~R~~~~------------------r~~~~kaql~sv~~~l~~~~s~~~~~~sm~~ 105 (114)
+-.+..+.. ++..++++-+.+..+.+++.+..+|...+++
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~ 158 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDS 158 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665554443 3445666667777777888888888777764
No 14
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.57 E-value=0.7 Score=34.70 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q psy1858 8 KITPEEMLRKNQRALNK--------------AMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYA 73 (114)
Q Consensus 8 k~~p~E~lr~~kr~lr~--------------~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~ 73 (114)
-.||...+...-+.+.. ..+.+++++..++.+-.+.......|.+.|+-+.|+-.+........++
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35787655554444433 3455666777777788888888889999999998888887776665555
Q ss_pred HHH
Q psy1858 74 KKF 76 (114)
Q Consensus 74 ~r~ 76 (114)
..|
T Consensus 101 ~~l 103 (221)
T PF04012_consen 101 ERL 103 (221)
T ss_pred HHH
Confidence 444
No 15
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=94.65 E-value=0.34 Score=34.36 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 14 ~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
.|+...+.|.+....|+.++..+..+-++....-.+.....-....+.+=+++-++-....++.....+|+......+..
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~ 84 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVV 84 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777666666655544444455556667777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy1858 94 RSQNAMADSMIGQLETTL 111 (114)
Q Consensus 94 ~s~~~~~~sm~~~t~~M~ 111 (114)
.++...+++|+...+.|.
T Consensus 85 ~al~~~~~~Lk~~~~~i~ 102 (171)
T PF03357_consen 85 KALKQSSKALKKINKQIN 102 (171)
T ss_dssp SS----SHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888777777777765553
No 16
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.37 E-value=11 Score=28.58 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy1858 7 RKITPEEMLRKNQRALNKA--------------MRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62 (114)
Q Consensus 7 ~k~~p~E~lr~~kr~lr~~--------------~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~aril 62 (114)
+-.||...++..-+.++.. .+.+++++..++..-.+.....+.|..+|+-+-|+--
T Consensus 21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~A 90 (219)
T TIGR02977 21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAA 90 (219)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3468886666666665543 3456677777777777888888899999998866644
No 17
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.86 E-value=13 Score=28.83 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=58.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH---------------------HHHHHHH----HHHH
Q psy1858 23 NKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDL---------------------VRTRKYA----KKFM 77 (114)
Q Consensus 23 r~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~l---------------------Vr~R~~~----~r~~ 77 (114)
--..+.++|+...+...-.+++..-..|..+||-+-|+-.+... .++|..+ .++-
T Consensus 51 ~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 51 IARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999976555443322 2222222 3344
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 78 MMKANIQAVSLKIQTLRSQNAMADSMIGQL 107 (114)
Q Consensus 78 ~~kaql~sv~~~l~~~~s~~~~~~sm~~~t 107 (114)
.++++++.+..+-+++.++..|..+.+++.
T Consensus 131 e~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 131 ELRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 667777777777777777777766655443
No 18
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=86.79 E-value=10 Score=27.72 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=61.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 19 QRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 19 kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
|..|+-+..-|.--.++-+..-+....+|-...+.|+.+.|++-|+++|+--+...=|--+.--.+-+..++...
T Consensus 1 K~~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i 75 (165)
T PF03398_consen 1 KTQLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLI 75 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777778888888889999999999999999999999999999999988887777666666665443
No 19
>PRK09720 cybC cytochrome b562; Provisional
Probab=85.59 E-value=6.2 Score=27.10 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy1858 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (114)
Q Consensus 12 ~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~ 77 (114)
.+.+.+++.-|..-+-+||. -...|..|+.+.|+..|++|..+|++.-+-|
T Consensus 49 s~e~K~y~~Gld~lI~qID~---------------A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 49 SPEMKDFRHGFDILVGQIDD---------------ALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35577777776665555553 3467899999999999999999999876554
No 20
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.73 E-value=9.5 Score=31.10 Aligned_cols=69 Identities=28% Similarity=0.502 Sum_probs=32.9
Q ss_pred CcccccCC-CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CC----hHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE-GQ----MESVKIMAKDLVRT 69 (114)
Q Consensus 1 m~~~f~~k-~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakk-g~----~~~arilAk~lVr~ 69 (114)
|+++||++ ++|.|.+|...-.|-.-.-.-+....+...+=.+...+||.-.=- |+ .+.+-.+|.++.+.
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 88899864 689999987766665543222344444444444555556654432 22 34566777777765
No 21
>PRK15058 cytochrome b562; Provisional
Probab=83.99 E-value=8.8 Score=27.45 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~ 77 (114)
+.+++++..+..-+-+|| .....+..|+.+.|+.-++++..+|++.-+-|
T Consensus 78 ~e~K~Y~~G~d~Li~qID---------------~a~~la~~GkL~eAK~~a~~l~~lR~eYHkky 127 (128)
T PRK15058 78 PEMKDFRHGFDILVGQID---------------GALKLANEGKVKEAQAAAEQLKTTRNAYHKKY 127 (128)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 457778777666665555 34567899999999999999999999876544
No 22
>KOG3231|consensus
Probab=83.57 E-value=17 Score=27.51 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1858 15 LRKNQRALNKAMRDLDREKQHMEQQEKKL 43 (114)
Q Consensus 15 lr~~kr~lr~~~R~ldRe~~~le~eEkk~ 43 (114)
||.-+|.|-+.-|.+|++-++||.|=+++
T Consensus 20 LRkt~RdierdRr~me~~Ek~LElEIkk~ 48 (208)
T KOG3231|consen 20 LRKTQRDIERDRRAMEKQEKQLELEIKKM 48 (208)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544
No 23
>KOG2910|consensus
Probab=75.07 E-value=36 Score=26.21 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=43.2
Q ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy1858 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63 (114)
Q Consensus 1 m~~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilA 63 (114)
|+.+|++++...++=|. --.|+..-+.|-+-.++++..........|++++.|+.+-|+.+=
T Consensus 1 MG~lfsK~~~Itd~DrA-IL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllL 62 (209)
T KOG2910|consen 1 MGNLFSKKSRITDQDRA-ILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLL 62 (209)
T ss_pred CCccccCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 77899985544444333 234566666666667777777777777888999999998776653
No 24
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.98 E-value=52 Score=27.54 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=44.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1858 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG-QMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQT 92 (114)
Q Consensus 20 r~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg-~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~ 92 (114)
-.+...-|++..++..|..+.+++-.+|++..+.+ +.+..+.-++ .-...+-.+..++..+..++..
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~------~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVK------ELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888899999999999999999866666 4333333232 2244455556666666655544
No 25
>PTZ00464 SNF-7-like protein; Provisional
Probab=71.57 E-value=43 Score=25.62 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=71.9
Q ss_pred CCCCHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 7 RKITPEEMLR---KNQRALNKAMRDLDREKQHMEQQEKKLIA----DIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMM 79 (114)
Q Consensus 7 ~k~~p~E~lr---~~kr~lr~~~R~ldRe~~~le~eEkk~~~----~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~ 79 (114)
++|||.+... +-...|.+-+..||.|...+...=++... .+|..|.. =..--|.|=+++-++-++..++...
T Consensus 12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~-~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQ-LLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688876554 44555555666677777666544332311 12222211 0123467778888999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1858 80 KANIQAVSLKIQTLRSQNAMADSMIGQLETT 110 (114)
Q Consensus 80 kaql~sv~~~l~~~~s~~~~~~sm~~~t~~M 110 (114)
...|........+..++..-+.+|+.+-+-|
T Consensus 91 ~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 91 QFTTESVKDTKVQVDAMKQAAKTLKKQFKKL 121 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887755
No 26
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=70.02 E-value=46 Score=25.24 Aligned_cols=104 Identities=10% Similarity=0.060 Sum_probs=74.9
Q ss_pred CCC-HHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1858 8 KIT-PEEM---LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANI 83 (114)
Q Consensus 8 k~~-p~E~---lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql 83 (114)
+|| |.+. ||+....|.+-...|+..+..+...-++....=++.....=..-=|.|=+++-++-++...+-.....|
T Consensus 21 ~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i 100 (191)
T PTZ00446 21 NNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL 100 (191)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 8754 556666677777888888777666554333222221111113345788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1858 84 QAVSLKIQTLRSQNAMADSMIGQLETTL 111 (114)
Q Consensus 84 ~sv~~~l~~~~s~~~~~~sm~~~t~~M~ 111 (114)
.+......+..++..-+.+|+..-+.|.
T Consensus 101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~ 128 (191)
T PTZ00446 101 ENMHLHKIAVNALSYAANTHKKLNNEIN 128 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998877653
No 27
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=69.36 E-value=15 Score=24.79 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy1858 46 DIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (114)
Q Consensus 46 ~IKkaakkg~~~~arilAk~lVr~R~~~~r~~ 77 (114)
.+..++..|+.+.|+..+++|--+|+..-+.|
T Consensus 71 ~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 71 KAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 56788999999999999999999999876655
No 28
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.28 E-value=92 Score=25.98 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=46.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 18 NQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM--ESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 18 ~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~--~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
.--.+...-|++..++..|..+.+++-.+|+...+.|+. +..+. +.+.-..++..+.+++..+..++...
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK------ELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677888888888999999999999886666542 22222 23333556666777777776666554
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.87 E-value=46 Score=22.00 Aligned_cols=68 Identities=21% Similarity=0.411 Sum_probs=48.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG-QMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 20 r~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg-~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
..|...-|++..++..+..+.+.+-.+|.++.+.| +.+..+--++++ ...+..+..++..+..+++..
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~l------k~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKEL------KEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888889999999999999999999998 555444444443 555556666666666666543
No 30
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=60.02 E-value=26 Score=24.03 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=27.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q psy1858 45 ADIKKMAKEGQMESVKIMAKDLVRTRKYAKK 75 (114)
Q Consensus 45 ~~IKkaakkg~~~~arilAk~lVr~R~~~~r 75 (114)
.++.+.|..|+.+.|+.-|+.+.-+|+..-+
T Consensus 67 D~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 67 DKADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999997644
No 31
>KOG3230|consensus
Probab=54.02 E-value=1e+02 Score=23.92 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1858 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIAD-----IKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLK 89 (114)
Q Consensus 15 lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~-----IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~ 89 (114)
|....|.|.++...|+-|-.+|=-+=|+.-.. .|-.|| |.--.|-|.+.++..|- .+...+-+++++-+.
T Consensus 21 l~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAk--dLvRtR~~i~kf~~~ka---qiqaVSl~iQtlkss 95 (224)
T KOG3230|consen 21 LNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAK--DLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKSS 95 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhH
Confidence 33344445555555555544444443333211 222222 12233445555544433 344555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy1858 90 IQTLRSQNAMADSMIGQLETTL 111 (114)
Q Consensus 90 l~~~~s~~~~~~sm~~~t~~M~ 111 (114)
-+-+.+|..++++|.+..+.|.
T Consensus 96 ~sma~aMkGaTkam~~MNrqmn 117 (224)
T KOG3230|consen 96 TSMAQAMKGATKAMAGMNRQMN 117 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 6666666666666666655553
No 32
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=52.53 E-value=30 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHhHHH
Q psy1858 9 ITPEEMLRKNQRALNKAMRDLD 30 (114)
Q Consensus 9 ~~p~E~lr~~kr~lr~~~R~ld 30 (114)
|+--|.-+...+.||.+..+||
T Consensus 17 P~ESELskr~rrLIRaa~k~le 38 (44)
T PF08134_consen 17 PTESELSKRIRRLIRAARKQLE 38 (44)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888877776
No 33
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=49.93 E-value=91 Score=22.15 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1858 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIK 48 (114)
Q Consensus 17 ~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IK 48 (114)
+....+.....++|+|...|+.+.+++..+++
T Consensus 20 ~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 20 ELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999999999888754
No 34
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.15 E-value=96 Score=20.55 Aligned_cols=41 Identities=15% Similarity=0.380 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 10 TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (114)
Q Consensus 10 ~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKka 50 (114)
+..+.+.+..-.|...+..++.++..++.+-..++.+|+.+
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777788888888888888888888777765
No 35
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=40.56 E-value=79 Score=18.75 Aligned_cols=36 Identities=17% Similarity=0.488 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1858 10 TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (114)
Q Consensus 10 ~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~ 45 (114)
..+|.|.+.=-.|-.-+-+||.+|..|+.-...|..
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899999999999999876665543
No 36
>KOG3229|consensus
Probab=38.95 E-value=1.9e+02 Score=22.61 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1858 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLI 44 (114)
Q Consensus 12 ~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~ 44 (114)
.-.+|+..|+|.+.+|+|.|+-++.++.=|+.-
T Consensus 20 q~kiRke~r~ldrqir~iqree~kv~~~iK~aA 52 (227)
T KOG3229|consen 20 QSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAA 52 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999998888766653
No 37
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=37.66 E-value=76 Score=19.07 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=18.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhHH
Q psy1858 5 FGRKITPEEMLRKNQRALNKAMRDL 29 (114)
Q Consensus 5 f~~k~~p~E~lr~~kr~lr~~~R~l 29 (114)
.|++.||+|.-++..+..=.++|.+
T Consensus 7 l~pk~DPeE~k~kmR~dvissvrnF 31 (51)
T PF15178_consen 7 LGPKMDPEEMKRKMREDVISSVRNF 31 (51)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4677899998777777766666654
No 38
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=36.60 E-value=1.8e+02 Score=21.75 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLI 44 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~ 44 (114)
.++.....+|..++++|+.++..+|.-..+.+
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k 147 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQSKSK 147 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 39
>KOG4743|consensus
Probab=34.44 E-value=52 Score=25.21 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=14.5
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q psy1858 4 LFGRKITPEEMLRKNQRALN 23 (114)
Q Consensus 4 ~f~~k~~p~E~lr~~kr~lr 23 (114)
|||+ +|++|.-|+.+..|.
T Consensus 22 LFGp-vd~EElSR~l~s~l~ 40 (195)
T KOG4743|consen 22 LFGP-VDHEELSRDLNSRLE 40 (195)
T ss_pred hcCC-CCHHHHhHHHHHHHH
Confidence 8997 999998886555443
No 40
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=33.84 E-value=66 Score=22.43 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=23.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1858 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQH 35 (114)
Q Consensus 4 ~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~ 35 (114)
++.. .+|.+.+.+.+..|-.+..+|+++...
T Consensus 79 iya~-~~P~k~leei~~~i~keiEelEk~~k~ 109 (113)
T COG5625 79 IYAT-TPPPKPLEEIEEEIMKEIEELEKEFKN 109 (113)
T ss_pred EecC-CCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 556788999999999888888888753
No 41
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.75 E-value=1.1e+02 Score=18.51 Aligned_cols=43 Identities=16% Similarity=0.456 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy1858 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK 64 (114)
Q Consensus 20 r~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk 64 (114)
..++....+++.++..++.+-..++.+|... ++|.+...-+|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l--~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL--KNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 3566677788888888888888888887765 236676666666
No 42
>PRK11637 AmiB activator; Provisional
Probab=33.59 E-value=2.7e+02 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Q psy1858 18 NQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQME 57 (114)
Q Consensus 18 ~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~ 57 (114)
.+..|.....+|+..-.+++..+..+...++.+.+.|+.+
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~ 140 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHT 140 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3334444444444444445555555566666666666644
No 43
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=32.96 E-value=79 Score=18.82 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=15.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1858 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEK 41 (114)
Q Consensus 4 ~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEk 41 (114)
+||+++ |-+.=+.+-+..|++-+.....+.+.+
T Consensus 16 lfGp~k-----LP~~~r~lG~~ir~fk~~~~~~~~~~~ 48 (53)
T PF02416_consen 16 LFGPKK-----LPELARSLGKAIREFKKAINEAKEEIE 48 (53)
T ss_dssp HS-TTT-----HHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HhCchH-----HHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 688533 334444555555555555555554433
No 44
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.73 E-value=1.3e+02 Score=20.75 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~ 56 (114)
+-|.+-.-.|...+..|+.+...++..=+.++..|+.+...|..
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34445556666777777777777777777778888888777654
No 45
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=1.8e+02 Score=20.45 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1858 8 KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE 53 (114)
Q Consensus 8 k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakk 53 (114)
++...+.|.+-.-.|...+.-|+++-.+++.+=++++.+|.++...
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455677777777788888888888888887777788777766544
No 46
>KOG1760|consensus
Probab=31.85 E-value=1.9e+02 Score=20.73 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=29.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1858 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (114)
Q Consensus 3 ~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~ 45 (114)
|++.+.+...++|.+.+-.+-+.+-.|+-+...++..-..++.
T Consensus 74 F~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 74 FIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred heeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557788999888888777777777776666665554443
No 47
>PF02234 CDI: Cyclin-dependent kinase inhibitor; InterPro: IPR003175 Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs). CDIs are involved in cell cycle arrest at the G1 phase.; GO: 0004861 cyclin-dependent protein kinase inhibitor activity, 0007050 cell cycle arrest, 0005634 nucleus; PDB: 1H27_E 1JSU_C.
Probab=31.43 E-value=38 Score=20.11 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=10.1
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q psy1858 4 LFGRKITPEEMLRKNQRALNK 24 (114)
Q Consensus 4 ~f~~k~~p~E~lr~~kr~lr~ 24 (114)
+||+ +|+.|.-+.....|+.
T Consensus 3 LFgp-~d~~e~~~~~~~~l~~ 22 (51)
T PF02234_consen 3 LFGP-VDHEELERFFQEELQE 22 (51)
T ss_dssp SS-----HHHHHHHHHHHHTT
T ss_pred CCCC-CCHHHHHHHHHHHHHH
Confidence 8994 6677766666665543
No 48
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.07 E-value=72 Score=16.21 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy1858 21 ALNKAMRDLDREKQHME 37 (114)
Q Consensus 21 ~lr~~~R~ldRe~~~le 37 (114)
.+|.-+++|+|+...|.
T Consensus 5 rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 5 RLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35666777777776653
No 49
>KOG2027|consensus
Probab=30.17 E-value=3.3e+02 Score=22.86 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1858 37 EQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNA 98 (114)
Q Consensus 37 e~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~~s~~~ 98 (114)
+-.-+++..+|-..++.|+.+.|+|=++.||+--+.+.-|--+-==.+-|..++.....+..
T Consensus 14 ~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~ 75 (388)
T KOG2027|consen 14 EALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKE 75 (388)
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhccc
Confidence 34457788899999999999999999999999999888887776666777777766665543
No 50
>PRK04098 sec-independent translocase; Provisional
Probab=29.81 E-value=2.3e+02 Score=20.92 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=4.5
Q ss_pred cccCCCCH
Q psy1858 4 LFGRKITP 11 (114)
Q Consensus 4 ~f~~k~~p 11 (114)
+||++.=|
T Consensus 19 vfGP~KLP 26 (158)
T PRK04098 19 FLGPDKLP 26 (158)
T ss_pred hcCchHHH
Confidence 68864334
No 51
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=29.09 E-value=3.3e+02 Score=22.43 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=56.5
Q ss_pred CCHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1858 9 ITPEEMLRK-------NQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81 (114)
Q Consensus 9 ~~p~E~lr~-------~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~ka 81 (114)
++|.+.+++ ..-.|....-.|.++..+|+.+-.++..++.+.+...+.-..-.|+|=++=+..-+.++-.+.-
T Consensus 122 ~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~ 201 (342)
T PF06632_consen 122 DNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQR 201 (342)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 578776654 2334455555778888889999999999999999888888888899877666555555555556
Q ss_pred HHHHHHH
Q psy1858 82 NIQAVSL 88 (114)
Q Consensus 82 ql~sv~~ 88 (114)
.|.++..
T Consensus 202 ~L~~~~~ 208 (342)
T PF06632_consen 202 LLASAKE 208 (342)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 6666554
No 52
>PLN02320 seryl-tRNA synthetase
Probab=29.06 E-value=3.9e+02 Score=23.27 Aligned_cols=66 Identities=9% Similarity=0.212 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 22 lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
+...-|++..++..+..+.+.+-.+|+...+..+.+..+. +.+.-...+..+.+.+..+..++...
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~------~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVE------EGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777788888888888877222222222222 23444566667777777766666543
No 53
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=29.03 E-value=30 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.605 Sum_probs=13.1
Q ss_pred cccCCCCHH--HHHHHHHHHHHHHHhHHHHHHH
Q psy1858 4 LFGRKITPE--EMLRKNQRALNKAMRDLDREKQ 34 (114)
Q Consensus 4 ~f~~k~~p~--E~lr~~kr~lr~~~R~ldRe~~ 34 (114)
+||+++=|. -.+-.+-+..|++.++++.+..
T Consensus 18 lFGp~KLP~~~r~lGk~ir~FK~~~~~~~~d~~ 50 (84)
T PRK00191 18 LFGAKKLPDAARSIGRSMRIFKSEVKEMSKDDQ 50 (84)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 688533221 2222334444444444444443
No 54
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=28.44 E-value=2e+02 Score=20.43 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy1858 26 MRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK 64 (114)
Q Consensus 26 ~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk 64 (114)
.+.++-+...||+.+..++.+|....+.-+...+-.++.
T Consensus 74 l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~~~ 112 (120)
T PF04521_consen 74 LSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVYVP 112 (120)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Confidence 477888888999999999999998877766655555544
No 55
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=27.39 E-value=2.1e+02 Score=21.91 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 12 EEMLRKNQRALNKAM-RDLDREKQHMEQQEKKLIADIKKMAK 52 (114)
Q Consensus 12 ~E~lr~~kr~lr~~~-R~ldRe~~~le~eEkk~~~~IKkaak 52 (114)
+|.+.+.+..||+-- -+++-++..--+-.|+++.+|+++++
T Consensus 59 Ke~v~eLqsalRRr~~~~~~~~i~sy~~~rKk~kK~i~K~~~ 100 (231)
T PF03087_consen 59 KEHVQELQSALRRRDDGSIESEIASYIRSRKKAKKEIAKLLR 100 (231)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666554 34556666666666667766666654
No 56
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.03 E-value=1e+02 Score=18.42 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy1858 21 ALNKAMRDLDREKQHMEQQE 40 (114)
Q Consensus 21 ~lr~~~R~ldRe~~~le~eE 40 (114)
.++...|.+.+++.+++++-
T Consensus 45 ~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 57
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=26.42 E-value=3.4e+02 Score=21.77 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=28.3
Q ss_pred cccccCCCCHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1858 2 EWLFGRKITPE-----------EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIK 48 (114)
Q Consensus 2 ~~~f~~k~~p~-----------E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IK 48 (114)
+||||+-.+|- +++...-..|....-+|.+++..|+..-......++
T Consensus 76 ~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~ 133 (333)
T PF05816_consen 76 GKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQ 133 (333)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777544443 334445666677777777777777766666554443
No 58
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=25.69 E-value=2.6e+02 Score=20.35 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=24.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1858 3 WLFGRKITPEEMLRKNQRALNKA------------------MRDLDREKQHMEQQEKKLIADIKKMAKEG 54 (114)
Q Consensus 3 ~~f~~k~~p~E~lr~~kr~lr~~------------------~R~ldRe~~~le~eEkk~~~~IKkaakkg 54 (114)
|+|.+.++|.+.+.+.-..+-.. ...+-.++..+|.+--.+..+|....-++
T Consensus 1 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~ 70 (214)
T PF01865_consen 1 WLFLFEKSPEKKFFDHFEEVAEASVLLAELLEAYLEGDYEDVEELLEEIKELEHEADEIKREIREELYKS 70 (214)
T ss_dssp ----S---TTHHHHHHHHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67766666766555533332222 33344566666777777777766666553
No 59
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=25.28 E-value=3.8e+02 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Q psy1858 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60 (114)
Q Consensus 9 ~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~ar 60 (114)
.||.+..+. -+...-+|.|||+|++..++. .-+...||.+...
T Consensus 299 ~d~~~~~~~--y~~~Q~QR~~ER~IR~~Kr~~-------~~~~~~~d~~~~~ 341 (361)
T PF06152_consen 299 YDPEENYEN--YEATQKQRYLERQIRKWKRRL-------AAAEALGDDENIQ 341 (361)
T ss_pred CChhhhhhh--hhhhHHHHHHHHHHHHHHHHH-------HHHHhcCCHHHHH
Confidence 466654433 446677788888888765543 3333446655543
No 60
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.27 E-value=81 Score=23.50 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=16.6
Q ss_pred HHHHHHHHcCChHHHHHHH
Q psy1858 45 ADIKKMAKEGQMESVKIMA 63 (114)
Q Consensus 45 ~~IKkaakkg~~~~arilA 63 (114)
..||.+|+.||.++..||.
T Consensus 97 ~~ik~aa~~~d~~Al~iL~ 115 (165)
T PF11286_consen 97 HKIKAAAEQGDPDALKILR 115 (165)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4688999999999999875
No 61
>KOG0840|consensus
Probab=25.08 E-value=1.1e+02 Score=24.62 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 53 EGQMESVKIMAKDLVRTRKYAKKFMMM 79 (114)
Q Consensus 53 kg~~~~arilAk~lVr~R~~~~r~~~~ 79 (114)
.|+.....|.|+|+++.|.+.+++|.-
T Consensus 195 ~Gqa~Di~i~akE~~~~k~~l~~i~a~ 221 (275)
T KOG0840|consen 195 GGQATDIVIQAKELMRIKEYLNEIYAK 221 (275)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999853
No 62
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.26 E-value=1.8e+02 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 25 AMRDLDREKQHMEQQEKKLIADIKKMAK 52 (114)
Q Consensus 25 ~~R~ldRe~~~le~eEkk~~~~IKkaak 52 (114)
++-+|.-++.+|+.|-+.|+.+|+...-
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4567888999999999999999998765
No 63
>PRK07857 hypothetical protein; Provisional
Probab=22.68 E-value=2.2e+02 Score=19.62 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1858 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE 53 (114)
Q Consensus 20 r~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakk 53 (114)
..+|..+-+||+++-+|=.+.-.+-.+|=+.=+.
T Consensus 31 ~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 31 DELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999888888777654333
No 64
>PHA03162 hypothetical protein; Provisional
Probab=22.57 E-value=1.3e+02 Score=21.78 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1858 26 MRDLDREKQHMEQQEKKLIADIKKMAKEG 54 (114)
Q Consensus 26 ~R~ldRe~~~le~eEkk~~~~IKkaakkg 54 (114)
+-+|.-|+.+|+.|-+.|+.+|+...--.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34567777889999999999998765443
No 65
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.28 E-value=3.7e+02 Score=21.48 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (114)
Q Consensus 12 ~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKka 50 (114)
+..+++.-..+.....++.+.+..+..+|+.+..+|++-
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekk 202 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKK 202 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777778888888999999999988654
No 66
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.20 E-value=2.6e+02 Score=18.85 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 20 RALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (114)
Q Consensus 20 r~lr~~~R~ldRe~~~le~eEkk~~~~IKka 50 (114)
+.++....++..+..+++.+...+..+|...
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777788888888888888888744
No 67
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=21.64 E-value=1.9e+02 Score=19.05 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=4.6
Q ss_pred cccCCCCH
Q psy1858 4 LFGRKITP 11 (114)
Q Consensus 4 ~f~~k~~p 11 (114)
+||+++=|
T Consensus 19 lfGpkKLP 26 (94)
T COG1826 19 VFGPKKLP 26 (94)
T ss_pred hcCcchhH
Confidence 68864433
No 68
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=21.14 E-value=3.2e+02 Score=20.57 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHH
Q psy1858 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG--QMESVKIMAKDLVRTRKYAKKFM 77 (114)
Q Consensus 9 ~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg--~~~~arilAk~lVr~R~~~~r~~ 77 (114)
++|.+.+-+.--..-.....+.-+...|+..|++...--.+.+..| |.+.+.-++.+++-+-....+.+
T Consensus 14 ~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l 84 (204)
T PF10368_consen 14 KKPEEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKEL 84 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877777777777777777777777777766666666665 67889999999988766555554
No 69
>KOG0150|consensus
Probab=21.09 E-value=4.8e+02 Score=21.59 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLV 67 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lV 67 (114)
|+=...+-.+.+-+++|-|-..+-+.+++++...+.++.. .+++.||++|-
T Consensus 31 e~GkrHke~V~Kritdi~rks~~kekeekKls~~la~mEa----aA~~syaedl~ 81 (336)
T KOG0150|consen 31 ERGKRHKENVAKRITDIHRKSLKKEKEEKKLSKELAAMEA----AASASYAEDLS 81 (336)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHH----HHHHHHHHhhh
Confidence 5555688889999999999999999999999999887653 47889999963
No 70
>PF06179 Med22: Surfeit locus protein 5 subunit 22 of Mediator complex; PDB: 3R84_P 3RJ1_K.
Probab=21.07 E-value=20 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=7.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1858 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHM 36 (114)
Q Consensus 3 ~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~l 36 (114)
|+||.=|++.|...+....+.....++++....|
T Consensus 65 wll~d~~~~~e~~~~~~~~~~~~~~~~~~~l~~l 98 (109)
T PF06179_consen 65 WLLGDFPPLNEDIDEQEERLDQEQEEVDKLLNAL 98 (109)
T ss_dssp HHHHB-----------------TT------THHH
T ss_pred HHhCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888766777777777777777777777666554
No 71
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=20.06 E-value=2.4e+02 Score=17.68 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=23.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1858 21 ALNKAMRDLDREKQHMEQQEKKLIADIK 48 (114)
Q Consensus 21 ~lr~~~R~ldRe~~~le~eEkk~~~~IK 48 (114)
.+|..+-+||+++-.|=.+.-.+-.+|=
T Consensus 3 ~lR~~Id~iD~~i~~Ll~~R~~l~~~i~ 30 (83)
T TIGR01791 3 ELRQEIEEIDKSILDLIEKRIKIARKIG 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999888888877773
No 72
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=20.03 E-value=4.4e+02 Score=20.70 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKM 50 (114)
Q Consensus 9 ~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKka 50 (114)
+...|+-+..--.|+..+.........|+..++.+..-|-++
T Consensus 21 ~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~ 62 (236)
T PF12269_consen 21 CVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARA 62 (236)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788788888888888888888888888888777653
Done!