Query psy1858
Match_columns 114
No_of_seqs 117 out of 470
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 18:05:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 2.3E-35 7.8E-40 224.4 9.0 107 7-113 4-110 (218)
2 2gd5_A Charged multivesicular 100.0 2.5E-32 8.4E-37 201.2 8.7 109 4-113 2-110 (179)
3 3frt_A Charged multivesicular 92.0 2.9 9.9E-05 31.1 11.6 89 19-112 9-102 (218)
4 2gd5_A Charged multivesicular 91.2 3 0.0001 29.6 12.5 91 21-112 11-102 (179)
5 3frr_A Uncharacterized protein 89.0 5.3 0.00018 29.1 13.2 86 3-92 2-87 (191)
6 1yzm_A FYVE-finger-containing 75.6 9.7 0.00033 22.2 6.6 42 36-77 7-48 (51)
7 1z0k_B FYVE-finger-containing 66.0 21 0.00071 22.1 6.8 42 36-77 25-66 (69)
8 2p22_A Suppressor protein STP2 63.2 16 0.00056 26.2 5.5 46 3-48 35-80 (174)
9 1gp8_A Protein (scaffolding pr 62.0 14 0.00049 20.4 3.9 25 42-66 12-36 (40)
10 3ggy_A Increased sodium tolera 61.5 43 0.0015 24.3 11.8 80 14-93 8-87 (193)
11 3v1a_A Computational design, M 61.2 21 0.00072 20.5 5.7 40 36-75 6-45 (48)
12 4abm_A Charged multivesicular 59.2 29 0.001 21.6 10.5 41 46-91 35-76 (79)
13 1upk_A MO25 protein; transfera 54.7 60 0.0021 25.7 7.9 65 1-69 3-77 (341)
14 2r6a_C DNAG primase, helicase 54.2 40 0.0014 21.6 6.6 38 36-73 103-140 (143)
15 3s4r_A Vimentin; alpha-helix, 48.0 51 0.0017 21.0 7.4 52 34-85 26-77 (93)
16 3q4f_C DNA repair protein XRCC 43.2 65 0.0022 23.4 5.9 41 5-45 142-182 (186)
17 1z0j_B FYVE-finger-containing 43.1 52 0.0018 19.6 6.8 39 38-76 16-54 (59)
18 2w6b_A RHO guanine nucleotide 41.5 54 0.0018 19.4 6.3 41 14-54 14-54 (56)
19 1t3j_A Mitofusin 1; coiled coi 40.6 74 0.0025 20.7 6.6 32 13-44 43-74 (96)
20 1a92_A Delta antigen; leucine 39.1 54 0.0019 18.9 4.0 34 12-46 3-36 (50)
21 4dci_A Uncharacterized protein 33.2 1.2E+02 0.0042 21.1 10.6 32 17-48 29-60 (150)
22 1jsu_C P27, KIP1, CIP2; comple 31.8 28 0.00096 22.0 2.2 18 4-22 10-27 (84)
23 4fm3_A Uncharacterized hypothe 30.9 1E+02 0.0035 20.0 4.9 54 9-66 3-60 (98)
24 3iv1_A Tumor susceptibility ge 30.6 1E+02 0.0035 19.3 5.9 37 13-49 28-64 (78)
25 2ke4_A CDC42-interacting prote 29.9 1.1E+02 0.0038 19.6 9.3 74 5-86 8-84 (98)
26 1wle_A Seryl-tRNA synthetase; 28.7 2.4E+02 0.0083 23.1 9.8 34 22-55 75-108 (501)
27 3w03_C DNA repair protein XRCC 27.8 1.4E+02 0.0049 21.4 5.7 40 7-46 135-181 (184)
28 3ibp_A Chromosome partition pr 25.1 62 0.0021 25.2 3.5 37 1-43 265-301 (302)
29 2wh0_Q Pkcev3, protein kinase 24.3 71 0.0024 16.3 2.5 17 36-52 11-27 (31)
30 2dq0_A Seryl-tRNA synthetase; 23.8 2.8E+02 0.0097 22.2 10.6 66 21-92 35-101 (455)
31 3u8p_A Cytochrome B562 integra 23.7 2.7E+02 0.0094 22.0 7.7 54 9-78 96-149 (347)
32 2zqm_A Prefoldin beta subunit 22.9 1.5E+02 0.005 18.6 5.0 44 10-53 70-113 (117)
33 1x4t_A Hypothetical protein LO 22.0 1.6E+02 0.0056 18.9 4.5 27 24-50 52-78 (92)
34 2xok_G ATP synthase subunit ga 21.3 99 0.0034 23.8 4.0 28 81-108 34-61 (311)
35 3lay_A Zinc resistance-associa 21.3 2.2E+02 0.0076 20.0 9.8 43 33-75 87-131 (175)
36 1k1f_A Breakpoint cluster regi 20.3 1.4E+02 0.0049 18.2 3.8 25 12-36 32-56 (72)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=224.43 Aligned_cols=107 Identities=24% Similarity=0.401 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1858 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86 (114)
Q Consensus 7 ~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv 86 (114)
++|||+|++|+|+|.||++.|+|||++++|+++|++++.+||++||+||+++|||||++|||+|+++.+||.++|||+||
T Consensus 4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV 83 (218)
T 3frt_A 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 87 SLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 87 ~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
+++|++++++.+|+++|+++|++|+.|
T Consensus 84 ~~rlqt~~s~~~v~~sM~~st~~M~~~ 110 (218)
T 3frt_A 84 LMGMKNQLAVLRVAGSLQKSTEVMKAM 110 (218)
T ss_dssp HHHHHHHHHCC----CCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.97 E-value=2.5e-32 Score=201.21 Aligned_cols=109 Identities=24% Similarity=0.389 Sum_probs=102.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1858 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANI 83 (114)
Q Consensus 4 ~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql 83 (114)
+|++ |||+|++|+|++.|++++|+|||++.+|+++|++++.+||+++++||.++|||||++|||.|++..+||.++++|
T Consensus 2 ~~~~-~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l 80 (179)
T 2gd5_A 2 AMAE-KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM 80 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1858 84 QAVSLKIQTLRSQNAMADSMIGQLETTLPI 113 (114)
Q Consensus 84 ~sv~~~l~~~~s~~~~~~sm~~~t~~M~~~ 113 (114)
++|+++++++.++.+|+++|++++++|+.|
T Consensus 81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~ 110 (179)
T 2gd5_A 81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAM 110 (179)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCCSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876
No 3
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=92.00 E-value=2.9 Score=31.12 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=44.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHH-HHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 19 QRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK----DLVR-TRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 19 kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk----~lVr-~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
+-.+|...|.|.+..+.|+++-.+++.+=|+.- ...+..|+ +.+| .=++..+.-....+|....++|++.
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~-----~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV 83 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVK-----RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665533321 11222222 2222 1233334445556666666666666
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy1858 94 RSQNAMADSMIGQLETTLP 112 (114)
Q Consensus 94 ~s~~~~~~sm~~~t~~M~~ 112 (114)
....+-+.+|..++++|..
T Consensus 84 ~~rlqt~~s~~~v~~sM~~ 102 (218)
T 3frt_A 84 LMGMKNQLAVLRVAGSLQK 102 (218)
T ss_dssp HHHHHHHHHCC----CCCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666653
No 4
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=91.15 E-value=3 Score=29.61 Aligned_cols=91 Identities=10% Similarity=0.057 Sum_probs=53.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1858 21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRT-RKYAKKFMMMKANIQAVSLKIQTLRSQNAM 99 (114)
Q Consensus 21 ~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~-R~~~~r~~~~kaql~sv~~~l~~~~s~~~~ 99 (114)
.||...+.|.+.++.|+++-.+++.+-|+.-..= ..+++--..+.++. =++..+.-....+|.....+|+......+-
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888777776665442110 01111111122221 123334445566777777777777777777
Q ss_pred HHHHHHHHHhhcc
Q psy1858 100 ADSMIGQLETTLP 112 (114)
Q Consensus 100 ~~sm~~~t~~M~~ 112 (114)
..++..++++|..
T Consensus 90 ~~~~~~v~~am~~ 102 (179)
T 2gd5_A 90 QLAVLRVAGSLQK 102 (179)
T ss_dssp HHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
No 5
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=88.95 E-value=5.3 Score=29.15 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=66.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1858 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKAN 82 (114)
Q Consensus 3 ~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaq 82 (114)
.+||+..++. +.|..|+-++--|.=-.++-+..-++...+|-+..+.|..+.|+|=+.+|||--+.++=|--+.--
T Consensus 2 ~mf~~~~~~~----K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilEly 77 (191)
T 3frr_A 2 HMLGSGFKAE----RLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELY 77 (191)
T ss_dssp --CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788766653 677888888877777777777888889999999999999999999999999999988877765555
Q ss_pred HHHHHHHHHH
Q psy1858 83 IQAVSLKIQT 92 (114)
Q Consensus 83 l~sv~~~l~~ 92 (114)
.+-+..++..
T Consensus 78 CelL~~R~~l 87 (191)
T 3frr_A 78 CDLLLARFGL 87 (191)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=75.61 E-value=9.7 Score=22.23 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy1858 36 MEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (114)
Q Consensus 36 le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~ 77 (114)
|..+..-++.-|+.|.+.|..|.+.+|..||=.+..++.++.
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 344555677889999999999999999999988888887765
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=65.99 E-value=21 Score=22.06 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy1858 36 MEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM 77 (114)
Q Consensus 36 le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~ 77 (114)
|..+..-++.-|+.|.+.|..|.+.+|..||=.+..++.++.
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 334455677889999999999999999999988888777654
No 8
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=63.20 E-value=16 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=33.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1858 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIK 48 (114)
Q Consensus 3 ~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IK 48 (114)
.+|......++.++.....|......|+.....|+++...+...|.
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~ 80 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQID 80 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777888888777777777777777777777666654
No 9
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=62.01 E-value=14 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q psy1858 42 KLIADIKKMAKEGQMESVKIMAKDL 66 (114)
Q Consensus 42 k~~~~IKkaakkg~~~~arilAk~l 66 (114)
.++.+|--|+..||.++++.|-.+|
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567888899999999999998877
No 10
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=61.53 E-value=43 Score=24.25 Aligned_cols=80 Identities=8% Similarity=0.134 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1858 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTL 93 (114)
Q Consensus 14 ~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~~ 93 (114)
..-+.|..|+-++--|.=-.++-+..-+....+|-+..+.|..+.|+|=+.+||+--+.+.=|--+---.+-+..++...
T Consensus 8 ~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll 87 (193)
T 3ggy_A 8 FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVI 87 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888777888888888999999999999999999999999999998887776555555555554433
No 11
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=61.18 E-value=21 Score=20.51 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q psy1858 36 MEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKK 75 (114)
Q Consensus 36 le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r 75 (114)
|..+..-++.-|+.|-+.|..+.+.+|-.||=.+..++.+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 3444556778899999999999999999999878777654
No 12
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=59.24 E-value=29 Score=21.57 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHH
Q psy1858 46 DIKKMAKEGQMESVKIMAKDLVRTRKYAKKFM-MMKANIQAVSLKIQ 91 (114)
Q Consensus 46 ~IKkaakkg~~~~arilAk~lVr~R~~~~r~~-~~kaql~sv~~~l~ 91 (114)
.-|+.. .+| +--|..+.+.++..+..+ ...+++..+..++.
T Consensus 35 ~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 35 AAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp HHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455 444 346888888877665543 45555555554443
No 13
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=54.71 E-value=60 Score=25.66 Aligned_cols=65 Identities=17% Similarity=0.399 Sum_probs=32.3
Q ss_pred CcccccCC-CCHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRK-ITPEEMLRKNQRALNKAMRDL---DREKQHMEQQEKKLIADIKKMAKEGQ------MESVKIMAKDLVRT 69 (114)
Q Consensus 1 m~~~f~~k-~~p~E~lr~~kr~lr~~~R~l---dRe~~~le~eEkk~~~~IKkaakkg~------~~~arilAk~lVr~ 69 (114)
|+ ||++ +||.|.+|..+-.|-.-. +- ++...+.+.|=.|...+||...- |+ .+.+-.||.++.+.
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~-~~~~~~~~~~k~~ee~sK~l~~mK~iL~-G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLE-KQDISDKKAEKATEEVSKNLVAMKEILY-GTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHH-C---CTHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHHHh
Confidence 55 8864 689999887666655432 11 12223343344455555665444 32 45677888887664
No 14
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=54.16 E-value=40 Score=21.56 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q psy1858 36 MEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYA 73 (114)
Q Consensus 36 le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~ 73 (114)
+.++-.++..+|..+...||.+.+.-++.+++..+++.
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 33444556678888888999999999999999887654
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.05 E-value=51 Score=20.96 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1858 34 QHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQA 85 (114)
Q Consensus 34 ~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~~kaql~s 85 (114)
+.||.+-+.++.+|...-.+|-....-+|=.+|-..|+++..+..-+++|..
T Consensus 26 R~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665544443334455777888899999988888887765
No 16
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=43.15 E-value=65 Score=23.44 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=26.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1858 5 FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA 45 (114)
Q Consensus 5 f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~ 45 (114)
+.+=|+|.|.+|+.-.--=..+-+|.+++.+|++|-..|..
T Consensus 142 L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 142 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33458999999986554445555666666666666555544
No 17
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=43.12 E-value=52 Score=19.64 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q psy1858 38 QQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKF 76 (114)
Q Consensus 38 ~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~ 76 (114)
.+-.-++.-|+.|.+.|..|.+-+|..||=-+..+..++
T Consensus 16 EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 16 QQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 344456788999999999999999999997777666554
No 18
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.51 E-value=54 Score=19.35 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1858 14 MLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG 54 (114)
Q Consensus 14 ~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg 54 (114)
.|++.-.+|+...+.|.+-.-.=++..+.++.-|++.++.+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34454455555555554444444566677777777776643
No 19
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.59 E-value=74 Score=20.69 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLI 44 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~ 44 (114)
.++.....+|..++.+|++++..||.-....+
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556666666666666666666665555444
No 20
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=39.08 E-value=54 Score=18.87 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy1858 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD 46 (114)
Q Consensus 12 ~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~ 46 (114)
+|.|.+|-. -|+-.++|+|+.++..+.=++++.+
T Consensus 3 ee~LeqWv~-~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 3 EDILEQWVS-GRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456666643 4666777888887777766666643
No 21
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=33.18 E-value=1.2e+02 Score=21.06 Aligned_cols=32 Identities=13% Similarity=0.469 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1858 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIK 48 (114)
Q Consensus 17 ~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IK 48 (114)
+....+.....++|+|...|+.+.+++..+++
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999998876
No 22
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=31.76 E-value=28 Score=22.05 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=11.9
Q ss_pred cccCCCCHHHHHHHHHHHH
Q psy1858 4 LFGRKITPEEMLRKNQRAL 22 (114)
Q Consensus 4 ~f~~k~~p~E~lr~~kr~l 22 (114)
|||. +|+.|.-+.....|
T Consensus 10 LFG~-vd~eEl~~~f~~~l 27 (84)
T 1jsu_C 10 LFGP-VDHEELTRDLEKHC 27 (84)
T ss_dssp SSCC-CCHHHHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHHH
Confidence 8996 89877555444443
No 23
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=30.86 E-value=1e+02 Score=20.05 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy1858 9 ITPEEMLRKNQRALNKAMR----DLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDL 66 (114)
Q Consensus 9 ~~p~E~lr~~kr~lr~~~R----~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~l 66 (114)
|-|.|+++-....|..+.+ +.-- .|...+.|+. .-+.+...+++..|+-||.+.
T Consensus 3 PaP~eql~~te~Ai~~A~~aga~~~ap---El~~A~dKl~-~A~~Am~~~~y~~Ar~lAEqA 60 (98)
T 4fm3_A 3 PAPLEQMRLTEQALEQAKAVGATDDVA---ELKLAQDKYA-AAQIAMTAESYKKARLLAEQA 60 (98)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCTTSH---HHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCCcccccH---HHHHHHHHHH-HHHHHHHcccHHHHHHHHHHH
Confidence 7899999998888887654 2221 3444555543 456788899999999999986
No 24
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.57 E-value=1e+02 Score=19.29 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 13 EMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKK 49 (114)
Q Consensus 13 E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKk 49 (114)
+-|+.-+-.|+...-.|+.=+.+|++++..+...|-.
T Consensus 28 ~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~ 64 (78)
T 3iv1_A 28 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIEL 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777888888888877776653
No 25
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.90 E-value=1.1e+02 Score=19.61 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=43.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1858 5 FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE---GQMESVKIMAKDLVRTRKYAKKFMMMKA 81 (114)
Q Consensus 5 f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakk---g~~~~arilAk~lVr~R~~~~r~~~~ka 81 (114)
|+. .+|+..-+..+..|..-.++|+++.. +..-+...+.-..+. ||..++ +.+|..+.+.++.+-..--
T Consensus 8 ~s~-LPpeqRkkkL~~Ki~el~~ei~ke~~----~regl~Km~~vY~~nP~~GD~~s~---~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 8 FSH-LPPEQQRKRLQQQLEERSRELQKEVD----QREALKKMKDVYEKTPQMGDPASL---EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp SSS-SCHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHCGGGCCGGGS---HHHHHHHHHHHHHHHHHHH
T ss_pred hcc-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCccCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 554 56777666666666655555555544 455555555555554 555554 6677777666666555444
Q ss_pred HHHHH
Q psy1858 82 NIQAV 86 (114)
Q Consensus 82 ql~sv 86 (114)
++++.
T Consensus 80 K~q~~ 84 (98)
T 2ke4_A 80 KYEAW 84 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 26
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.70 E-value=2.4e+02 Score=23.06 Aligned_cols=34 Identities=9% Similarity=0.297 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1858 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55 (114)
Q Consensus 22 lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~ 55 (114)
|...-|++..+...|+.+.+.+-.+|.++.+.|+
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~ 108 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQD 108 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4455667777777888888888888887766653
No 27
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.78 E-value=1.4e+02 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCCCHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy1858 7 RKITPEEMLRK-------NQRALNKAMRDLDREKQHMEQQEKKLIAD 46 (114)
Q Consensus 7 ~k~~p~E~lr~-------~kr~lr~~~R~ldRe~~~le~eEkk~~~~ 46 (114)
+=|+|.|.+++ ..-.|......|.++..+|.+|-.+...+
T Consensus 135 ~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 135 KVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889998886 33445555555555555565555554444
No 28
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=25.10 E-value=62 Score=25.23 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=0.0
Q ss_pred CcccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1858 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKL 43 (114)
Q Consensus 1 m~~~f~~k~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~ 43 (114)
++..|- +||++.+++ ++....+++|+...++..+.+.
T Consensus 265 l~vaF~--~dPe~~l~~----~~~~~~~~~r~l~~~~~~~qq~ 301 (302)
T 3ibp_A 265 LAVAFE--SDPEAEIRQ----LNSRRVELERALSNHENDNQQQ 301 (302)
T ss_dssp TTTSSS--CCHHHHHHH----HHHHHHHHHHHHHC--------
T ss_pred hhhhcC--CCHHHHHHH----HHHHHHHHHHHHHHHHhhhhhc
No 29
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=24.28 E-value=71 Score=16.26 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1858 36 MEQQEKKLIADIKKMAK 52 (114)
Q Consensus 36 le~eEkk~~~~IKkaak 52 (114)
|++|-+.+++.|+++..
T Consensus 11 cdqeikelennirkals 27 (31)
T 2wh0_Q 11 CDQEIKELENNIRKALS 27 (31)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 45555666667776653
No 30
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.82 E-value=2.8e+02 Score=22.20 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1858 21 ALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM-ESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQT 92 (114)
Q Consensus 21 ~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~-~~arilAk~lVr~R~~~~r~~~~kaql~sv~~~l~~ 92 (114)
.|...-|++..+...|+.+.+.+-.+|.++.+.|.. +..+. +.+.-...+-.+..++..+..+++.
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA------KSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777788888888888888999887666632 22111 1223344445556666666655544
No 31
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=23.70 E-value=2.7e+02 Score=22.00 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 9 ITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMM 78 (114)
Q Consensus 9 ~~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakkg~~~~arilAk~lVr~R~~~~r~~~ 78 (114)
||- ..+++++.-|.--+-+||+-. .+|..|+.+.|+-.|.++--+|+..-+.|+
T Consensus 96 ~ds-~E~kd~~~Gl~~li~qiD~a~---------------~la~~g~l~eAkk~a~~~~~~r~~yHk~~~ 149 (347)
T 3u8p_A 96 PDS-PEMKDFRHGFDILVGQIDDAL---------------KLANEGKVKEAQAAAEQLKTTRNAYHQKYR 149 (347)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHTHHHHHHHHHHHHS
T ss_pred CCc-hHHHHHHHHHHHHHHHhhHHH---------------HhhhccchHHHHHHHHHhHhHHHhhhhhcc
Confidence 443 348899888888887777643 478899999999999999999999888775
No 32
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.85 E-value=1.5e+02 Score=18.57 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1858 10 TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE 53 (114)
Q Consensus 10 ~p~E~lr~~kr~lr~~~R~ldRe~~~le~eEkk~~~~IKkaakk 53 (114)
+..+.|.+..-.|...+..|+.++..++.+=..++..+......
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34456666777777777777777777777777777777766543
No 33
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.96 E-value=1.6e+02 Score=18.92 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 24 KAMRDLDREKQHMEQQEKKLIADIKKM 50 (114)
Q Consensus 24 ~~~R~ldRe~~~le~eEkk~~~~IKka 50 (114)
..+|+|.-||++|=+|...=+..|+.+
T Consensus 52 ~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999754
No 34
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=21.31 E-value=99 Score=23.77 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1858 81 ANIQAVSLKIQTLRSQNAMADSMIGQLE 108 (114)
Q Consensus 81 aql~sv~~~l~~~~s~~~~~~sm~~~t~ 108 (114)
+.|..+..++.+..++.+++++|+-++-
T Consensus 34 aslkeIk~RI~Svk~t~KITkAMkmVAa 61 (311)
T 2xok_G 34 ATLKEVEMRLKSIKNIEKITKTMKIVAS 61 (311)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888889999999999887653
No 35
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.27 E-value=2.2e+02 Score=20.04 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHH
Q psy1858 33 KQHMEQQEKKLIADIKKMAKEG--QMESVKIMAKDLVRTRKYAKK 75 (114)
Q Consensus 33 ~~~le~eEkk~~~~IKkaakkg--~~~~arilAk~lVr~R~~~~r 75 (114)
...+..+-.....++....... |.+.++-+++++..+|.+...
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455666666555 556788888888888876554
No 36
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=20.32 E-value=1.4e+02 Score=18.23 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1858 12 EEMLRKNQRALNKAMRDLDREKQHM 36 (114)
Q Consensus 12 ~E~lr~~kr~lr~~~R~ldRe~~~l 36 (114)
+..|..++-.||+-..++.+|..++
T Consensus 32 EqeLe~Ck~sIrrLE~evn~ErFrm 56 (72)
T 1k1f_A 32 EQELERAKASIRRLEQEVNQERFRM 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567778888888777777777654
Done!