Your job contains 1 sequence.
>psy1858
MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK
IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLETTLPIR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1858
(114 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0039402 - symbol:vps2 "vps2" species:7227 "Drosoph... 453 7.3e-43 1
ZFIN|ZDB-GENE-040426-2922 - symbol:bc2 "putative breast a... 423 1.1e-39 1
UNIPROTKB|Q3T0U5 - symbol:CHMP2A "Chromatin modifying pro... 398 4.9e-37 1
UNIPROTKB|E2RIU2 - symbol:CHMP2A "Uncharacterized protein... 398 4.9e-37 1
UNIPROTKB|O43633 - symbol:CHMP2A "Charged multivesicular ... 398 4.9e-37 1
MGI|MGI:1916203 - symbol:Chmp2a "charged multivesicular b... 398 4.9e-37 1
RGD|1305050 - symbol:Chmp2a "charged multivesicular body ... 398 4.9e-37 1
WB|WBGene00012903 - symbol:vps-2 species:6239 "Caenorhabd... 390 3.5e-36 1
UNIPROTKB|Q5ZHN1 - symbol:CHMP2A "Charged multivesicular ... 385 1.2e-35 1
DICTYBASE|DDB_G0292400 - symbol:vps2B "SNF7 family protei... 330 7.9e-30 1
CGD|CAL0003689 - symbol:VPS2 species:5476 "Candida albica... 322 5.6e-29 1
UNIPROTKB|Q5A501 - symbol:VPS2 "Putative uncharacterized ... 322 5.6e-29 1
ASPGD|ASPL0000001940 - symbol:AN6898 species:162425 "Emer... 319 1.2e-28 1
SGD|S000001485 - symbol:DID4 "Class E Vps protein of the ... 311 8.2e-28 1
TAIR|locus:2054612 - symbol:VPS2.1 species:3702 "Arabidop... 297 2.5e-26 1
POMBASE|SPAC4F8.01 - symbol:did4 "ESCRT III complex subun... 238 4.4e-20 1
DICTYBASE|DDB_G0290087 - symbol:vps2A "SNF7 family protei... 180 6.2e-14 1
UNIPROTKB|I3LSS2 - symbol:CHMP2A "Uncharacterized protein... 177 1.3e-13 1
FB|FBgn0035589 - symbol:CHMP2B "Charged multivesicular bo... 176 1.6e-13 1
TAIR|locus:2163396 - symbol:VPS2.2 species:3702 "Arabidop... 168 1.2e-12 1
UNIPROTKB|F1NR65 - symbol:CHMP2B "Charged multivesicular ... 165 2.4e-12 1
WB|WBGene00020866 - symbol:T27F7.1 species:6239 "Caenorha... 165 2.4e-12 1
UNIPROTKB|Q5F3A2 - symbol:CHMP2B "Charged multivesicular ... 162 5.0e-12 1
TAIR|locus:2024107 - symbol:VPS2.3 "vacuolar protein sort... 161 6.4e-12 1
DICTYBASE|DDB_G0284769 - symbol:vps24 "SNF7 family protei... 159 1.0e-11 1
UNIPROTKB|Q9UQN3 - symbol:CHMP2B "Charged multivesicular ... 159 1.0e-11 1
ZFIN|ZDB-GENE-070628-3 - symbol:chmp2ba "chromatin modify... 159 1.0e-11 1
ZFIN|ZDB-GENE-040426-2539 - symbol:chmp2bb "chromatin mod... 159 1.5e-11 1
UNIPROTKB|Q3SX42 - symbol:CHMP2B "Charged multivesicular ... 156 2.2e-11 1
UNIPROTKB|E2R417 - symbol:CHMP2B "Uncharacterized protein... 156 2.2e-11 1
UNIPROTKB|F2Z5Q1 - symbol:CHMP2B "Uncharacterized protein... 156 2.2e-11 1
MGI|MGI:1916192 - symbol:Chmp2b "charged multivesicular b... 156 2.2e-11 1
WB|WBGene00007216 - symbol:C01A2.4 species:6239 "Caenorha... 153 4.5e-11 1
UNIPROTKB|C9J0A7 - symbol:CHMP2B "Charged multivesicular ... 145 3.2e-10 1
POMBASE|SPAC9E9.14 - symbol:vps24 "ESCRT III complex subu... 142 7.5e-10 1
UNIPROTKB|E1C230 - symbol:VPS24 "Uncharacterized protein"... 134 5.0e-09 1
RGD|708556 - symbol:Chmp3 "charged multivesicular body pr... 132 1.0e-08 1
MGI|MGI:1913950 - symbol:Chmp3 "charged multivesicular bo... 132 1.0e-08 1
UNIPROTKB|F1NVQ6 - symbol:CHMP1B "Charged multivesicular ... 129 1.6e-08 1
UNIPROTKB|Q5ZKX1 - symbol:CHMP1B "Charged multivesicular ... 129 1.6e-08 1
UNIPROTKB|I3LFQ9 - symbol:CHMP3 "Uncharacterized protein"... 129 2.2e-08 1
UNIPROTKB|Q58CS7 - symbol:CHMP3 "Charged multivesicular b... 129 2.2e-08 1
UNIPROTKB|Q7LBR1 - symbol:CHMP1B "Charged multivesicular ... 127 2.6e-08 1
UNIPROTKB|Q9Y3E7 - symbol:CHMP3 "Charged multivesicular b... 128 2.9e-08 1
UNIPROTKB|Q5E994 - symbol:CHMP1B "Charged multivesicular ... 126 3.3e-08 1
RGD|1593500 - symbol:Chmp1b "charged multivesicular body ... 128 3.4e-08 1
MGI|MGI:1914314 - symbol:Chmp1b "charged multivesicular b... 125 4.2e-08 1
ZFIN|ZDB-GENE-030131-8370 - symbol:chmp1b "chromatin modi... 125 4.2e-08 1
UNIPROTKB|E2RDX0 - symbol:CHMP3 "Uncharacterized protein"... 129 5.5e-08 1
MGI|MGI:1914278 - symbol:2610002M06Rik "RIKEN cDNA 261000... 121 1.1e-07 1
RGD|1566265 - symbol:RGD1566265 "similar to RIKEN cDNA 26... 121 1.1e-07 1
TAIR|locus:2172686 - symbol:VPS24.1 species:3702 "Arabido... 122 1.6e-07 1
ZFIN|ZDB-GENE-040426-2600 - symbol:chmp3 "charged multive... 121 1.9e-07 1
UNIPROTKB|F1SVC7 - symbol:CHMP3 "Uncharacterized protein"... 119 3.0e-07 1
FB|FBgn0036805 - symbol:Chmp1 "Chmp1" species:7227 "Droso... 117 3.9e-07 1
FB|FBgn0037231 - symbol:vps24 "Charged multivesicular bod... 115 9.7e-07 1
WB|WBGene00017735 - symbol:F23C8.6 species:6239 "Caenorha... 107 6.0e-06 1
SGD|S000001524 - symbol:VPS24 "Subunit of the ESCRT-III c... 104 1.8e-05 1
DICTYBASE|DDB_G0267394 - symbol:vps46 "SNF7 family protei... 100 3.1e-05 1
TAIR|locus:2032607 - symbol:VPS46.2 species:3702 "Arabido... 96 0.00011 1
TAIR|locus:2007883 - symbol:VPS46.1 "vacuolar protein sor... 92 0.00031 1
ZFIN|ZDB-GENE-040426-1474 - symbol:chmp1a "chromatin modi... 90 0.00049 1
POMBASE|SPBC13G1.12 - symbol:did2 "ESCRT III complex subu... 90 0.00050 1
UNIPROTKB|G4MKS3 - symbol:MGG_06670 "Charged multivesicul... 90 0.00072 1
WB|WBGene00011342 - symbol:T01G5.7 species:6239 "Caenorha... 90 0.00089 1
>FB|FBgn0039402 [details] [associations]
symbol:vps2 "vps2" species:7227 "Drosophila melanogaster"
[GO:0015031 "protein transport" evidence=IEA] InterPro:IPR005024
Pfam:PF03357 EMBL:AE014297 GO:GO:0015031 KO:K12191 OMA:MEWLFGK
GeneTree:ENSGT00550000074737 FlyBase:FBgn0039402 EMBL:BT003747
RefSeq:NP_651455.1 UniGene:Dm.10330 SMR:Q9VBI3 IntAct:Q9VBI3
MINT:MINT-1674416 STRING:Q9VBI3 EnsemblMetazoa:FBtr0084967
GeneID:43164 KEGG:dme:Dmel_CG14542 UCSC:CG14542-RA CTD:43164
InParanoid:Q9VBI3 GenomeRNAi:43164 NextBio:832507 Uniprot:Q9VBI3
Length = 256
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 88/105 (83%), Positives = 100/105 (95%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+WLFG+KI+P+EMLRKNQRALNKAMRDLDRE+ MEQQEKK+IADIKKMAKEGQM++VK
Sbjct: 1 MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+YAKKFM+MKANIQAVSLKIQTL+SQN MA +M G
Sbjct: 61 IMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKG 105
>ZFIN|ZDB-GENE-040426-2922 [details] [associations]
symbol:bc2 "putative breast adenocarcinoma marker"
species:7955 "Danio rerio" [GO:0015031 "protein transport"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005768 "endosome" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0031902 "late endosome
membrane" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
ZFIN:ZDB-GENE-040426-2922 GO:GO:0031902 GO:GO:0015031
eggNOG:COG5491 HOGENOM:HOG000177218 HOVERGEN:HBG107298 KO:K12191
OrthoDB:EOG4HMJBJ EMBL:BC045320 IPI:IPI00492134 RefSeq:NP_998682.1
UniGene:Dr.75361 ProteinModelPortal:Q7ZW25 STRING:Q7ZW25
PRIDE:Q7ZW25 GeneID:798901 KEGG:dre:798901 InParanoid:Q7ZW25
NextBio:20933600 ArrayExpress:Q7ZW25 Uniprot:Q7ZW25
Length = 220
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 83/105 (79%), Positives = 98/105 (93%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM++VK
Sbjct: 1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y KKF+MM+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>UNIPROTKB|Q3T0U5 [details] [associations]
symbol:CHMP2A "Chromatin modifying protein 2A" species:9913
"Bos taurus" [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0015031 eggNOG:COG5491 CTD:27243
HOGENOM:HOG000177218 HOVERGEN:HBG107298 KO:K12191 OrthoDB:EOG4HMJBJ
OMA:MEWLFGK GeneTree:ENSGT00550000074737 EMBL:DAAA02047921
EMBL:BC102258 IPI:IPI00705335 RefSeq:NP_001029722.1 UniGene:Bt.5624
STRING:Q3T0U5 Ensembl:ENSBTAT00000018429 GeneID:523847
KEGG:bta:523847 InParanoid:Q3T0U5 NextBio:20873841 Uniprot:Q3T0U5
Length = 222
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>UNIPROTKB|E2RIU2 [details] [associations]
symbol:CHMP2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0015031 CTD:27243 KO:K12191 OMA:MEWLFGK
GeneTree:ENSGT00550000074737 EMBL:AAEX03000690 RefSeq:XP_850536.1
ProteinModelPortal:E2RIU2 Ensembl:ENSCAFT00000003684 GeneID:476364
KEGG:cfa:476364 NextBio:20852037 Uniprot:E2RIU2
Length = 222
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>UNIPROTKB|O43633 [details] [associations]
symbol:CHMP2A "Charged multivesicular body protein 2a"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005829 "cytosol"
evidence=TAS] [GO:0016044 "cellular membrane organization"
evidence=TAS] [GO:0016197 "endosomal transport" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR005024 Pfam:PF03357 GO:GO:0005829
GO:GO:0031902 GO:GO:0015031 GO:GO:0016197 GO:GO:0016044
EMBL:CH471135 eggNOG:COG5491 CTD:27243 HOGENOM:HOG000177218
HOVERGEN:HBG107298 KO:K12191 OrthoDB:EOG4HMJBJ EMBL:AF042384
EMBL:AJ277113 EMBL:AY364248 EMBL:BT007298 EMBL:CR457002
EMBL:AK311974 EMBL:BC002502 IPI:IPI00004416 RefSeq:NP_055268.1
RefSeq:NP_940818.1 UniGene:Hs.12107 ProteinModelPortal:O43633
SMR:O43633 DIP:DIP-48533N IntAct:O43633 MINT:MINT-5005843
STRING:O43633 PhosphoSite:O43633 OGP:O43633 PaxDb:O43633
PeptideAtlas:O43633 PRIDE:O43633 DNASU:27243
Ensembl:ENST00000312547 GeneID:27243 KEGG:hsa:27243 UCSC:uc002qti.3
GeneCards:GC19M059062 HGNC:HGNC:30216 HPA:HPA041153 HPA:HPA042031
MIM:610893 neXtProt:NX_O43633 PharmGKB:PA142672111
InParanoid:O43633 OMA:MEWLFGK PhylomeDB:O43633 ChiTaRS:CHMP2A
GenomeRNAi:27243 NextBio:50143 Bgee:O43633 CleanEx:HS_CHMP2A
Genevestigator:O43633 GermOnline:ENSG00000130724 Uniprot:O43633
Length = 222
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>MGI|MGI:1916203 [details] [associations]
symbol:Chmp2a "charged multivesicular body protein 2A"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005768
"endosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=ISO]
InterPro:IPR005024 Pfam:PF03357 MGI:MGI:1916203 GO:GO:0005829
GO:GO:0031902 GO:GO:0015031 eggNOG:COG5491 CTD:27243
HOGENOM:HOG000177218 HOVERGEN:HBG107298 KO:K12191 OrthoDB:EOG4HMJBJ
OMA:MEWLFGK EMBL:AK005267 EMBL:BC012230 IPI:IPI00119020
RefSeq:NP_081161.1 UniGene:Mm.295670 ProteinModelPortal:Q9DB34
SMR:Q9DB34 STRING:Q9DB34 PaxDb:Q9DB34 PRIDE:Q9DB34
Ensembl:ENSMUST00000005711 GeneID:68953 KEGG:mmu:68953
UCSC:uc009ffc.2 GeneTree:ENSGT00550000074737 InParanoid:Q9DB34
NextBio:328271 Bgee:Q9DB34 CleanEx:MM_CHMP2A Genevestigator:Q9DB34
GermOnline:ENSMUSG00000033916 Uniprot:Q9DB34
Length = 222
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>RGD|1305050 [details] [associations]
symbol:Chmp2a "charged multivesicular body protein 2A"
species:10116 "Rattus norvegicus" [GO:0005829 "cytosol"
evidence=IEA;ISO] [GO:0015031 "protein transport" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA;ISO]
InterPro:IPR005024 Pfam:PF03357 RGD:1305050 GO:GO:0005829
GO:GO:0015031 eggNOG:COG5491 CTD:27243 HOGENOM:HOG000177218
HOVERGEN:HBG107298 KO:K12191 OrthoDB:EOG4HMJBJ
GeneTree:ENSGT00550000074737 EMBL:BC167093 EMBL:CH474090
IPI:IPI00360875 RefSeq:NP_001102376.1 UniGene:Rn.203178 SMR:B2RZB5
STRING:B2RZB5 Ensembl:ENSRNOT00000030931 GeneID:365191
KEGG:rno:365191 UCSC:RGD:1305050 NextBio:686824
Genevestigator:B2RZB5 Uniprot:B2RZB5
Length = 222
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 76/105 (72%), Positives = 97/105 (92%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM++V+
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
>WB|WBGene00012903 [details] [associations]
symbol:vps-2 species:6239 "Caenorhabditis elegans"
[GO:0015031 "protein transport" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR005024
Pfam:PF03357 GO:GO:0009792 GO:GO:0015031 eggNOG:COG5491
HOGENOM:HOG000177218 KO:K12191 OMA:MEWLFGK
GeneTree:ENSGT00550000074737 EMBL:AL110485 RefSeq:NP_496717.1
ProteinModelPortal:Q9U2F6 SMR:Q9U2F6 IntAct:Q9U2F6 STRING:Q9U2F6
PaxDb:Q9U2F6 EnsemblMetazoa:Y46G5A.12.1 EnsemblMetazoa:Y46G5A.12.2
EnsemblMetazoa:Y46G5A.12.3 GeneID:174908 KEGG:cel:CELE_Y46G5A.12
UCSC:Y46G5A.12.1 CTD:174908 WormBase:Y46G5A.12 InParanoid:Q9U2F6
NextBio:885996 Uniprot:Q9U2F6
Length = 237
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 76/105 (72%), Positives = 95/105 (90%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M++LFGR+ TP E+LR+NQRALNKA+R+LDRE+ ME QEKK+IADIK MAK+ QM+SVK
Sbjct: 1 MDFLFGRRKTPAELLRQNQRALNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMDSVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+MAKDLVRTR+Y KKF++MKANIQAVSLK+QTL+SQ+AMA +M G
Sbjct: 61 VMAKDLVRTRRYIKKFIVMKANIQAVSLKVQTLKSQDAMASAMKG 105
>UNIPROTKB|Q5ZHN1 [details] [associations]
symbol:CHMP2A "Charged multivesicular body protein 2a"
species:9031 "Gallus gallus" [GO:0015031 "protein transport"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0031902 GO:GO:0015031
eggNOG:COG5491 EMBL:AJ721103 IPI:IPI00594797 RefSeq:NP_001074361.1
UniGene:Gga.7026 ProteinModelPortal:Q5ZHN1 STRING:Q5ZHN1
PRIDE:Q5ZHN1 GeneID:776036 KEGG:gga:776036 CTD:27243
HOGENOM:HOG000177218 HOVERGEN:HBG107298 InParanoid:Q5ZHN1 KO:K12191
OrthoDB:EOG4HMJBJ NextBio:20922661 Uniprot:Q5ZHN1
Length = 220
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 75/105 (71%), Positives = 94/105 (89%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM++VK
Sbjct: 1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
IMAKDLVRTR+Y KKF+ M+AN+QAVSLKIQTL+S N+MA +M G
Sbjct: 61 IMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKG 105
>DICTYBASE|DDB_G0292400 [details] [associations]
symbol:vps2B "SNF7 family protein" species:44689
"Dictyostelium discoideum" [GO:0015031 "protein transport"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016020 "membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0010008
"endosome membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR005024 Pfam:PF03357
dictyBase:DDB_G0292400 GenomeReviews:CM000155_GR GO:GO:0015031
GO:GO:0010008 EMBL:AAFI02000190 eggNOG:COG5491 KO:K12191
OMA:MEWLFGK RefSeq:XP_629585.1 ProteinModelPortal:Q54DB1
STRING:Q54DB1 EnsemblProtists:DDB0234176 GeneID:8628645
KEGG:ddi:DDB_G0292400 ProtClustDB:CLSZ2429397 Uniprot:Q54DB1
Length = 198
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 65/103 (63%), Positives = 86/103 (83%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+LFG++ TP+E+LR+NQR LNK+MR++DRE+ ++ QEKK+I DIKKMAK+GQM S KIM
Sbjct: 2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIM 61
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
AKDLVRTR + +KF MK +QAVSL+IQTL+S AMA++M G
Sbjct: 62 AKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKG 104
>CGD|CAL0003689 [details] [associations]
symbol:VPS2 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0006623 "protein targeting to
vacuole" evidence=ISS] [GO:0000815 "ESCRT III complex"
evidence=ISS] [GO:0045053 "protein retention in Golgi apparatus"
evidence=IEA] [GO:0070676 "intralumenal vesicle formation"
evidence=IEA] [GO:0043328 "protein targeting to vacuole involved in
ubiquitin-dependent protein catabolic process via the
multivesicular body sorting pathway" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 CGD:CAL0003689 GO:GO:0006623
EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:0000815 eggNOG:COG5491
HOGENOM:HOG000177218 KO:K12191 RefSeq:XP_716784.1
RefSeq:XP_716844.1 ProteinModelPortal:Q5A501 STRING:Q5A501
GeneID:3641513 GeneID:3641546 KEGG:cal:CaO19.8560
KEGG:cal:CaO19.945 Uniprot:Q5A501
Length = 235
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 62/102 (60%), Positives = 77/102 (75%)
Query: 2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
EW FG+K+TP+E LRKNQRAL K R+L RE ++QQEKKLI+DIKK AK GQ+ S KI
Sbjct: 6 EWAFGKKLTPQERLRKNQRALEKTQRELSREITKLQQQEKKLISDIKKSAKSGQISSAKI 65
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
AKDL+RT+ Y KF MK +QA+SL+IQ++RS MA SM
Sbjct: 66 QAKDLIRTKSYVSKFTSMKTQLQAISLRIQSVRSNQQMAMSM 107
>UNIPROTKB|Q5A501 [details] [associations]
symbol:VPS2 "Putative uncharacterized protein DID4"
species:237561 "Candida albicans SC5314" [GO:0000815 "ESCRT III
complex" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006623 "protein targeting to vacuole"
evidence=ISS] InterPro:IPR005024 Pfam:PF03357 CGD:CAL0003689
GO:GO:0006623 EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:0000815
eggNOG:COG5491 HOGENOM:HOG000177218 KO:K12191 RefSeq:XP_716784.1
RefSeq:XP_716844.1 ProteinModelPortal:Q5A501 STRING:Q5A501
GeneID:3641513 GeneID:3641546 KEGG:cal:CaO19.8560
KEGG:cal:CaO19.945 Uniprot:Q5A501
Length = 235
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 62/102 (60%), Positives = 77/102 (75%)
Query: 2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
EW FG+K+TP+E LRKNQRAL K R+L RE ++QQEKKLI+DIKK AK GQ+ S KI
Sbjct: 6 EWAFGKKLTPQERLRKNQRALEKTQRELSREITKLQQQEKKLISDIKKSAKSGQISSAKI 65
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
AKDL+RT+ Y KF MK +QA+SL+IQ++RS MA SM
Sbjct: 66 QAKDLIRTKSYVSKFTSMKTQLQAISLRIQSVRSNQQMAMSM 107
>ASPGD|ASPL0000001940 [details] [associations]
symbol:AN6898 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0043936 "asexual
sporulation resulting in formation of a cellular spore"
evidence=IEA] [GO:0045053 "protein retention in Golgi apparatus"
evidence=IEA] [GO:0070676 "intralumenal vesicle formation"
evidence=IEA] [GO:0043328 "protein targeting to vacuole involved in
ubiquitin-dependent protein catabolic process via the
multivesicular body sorting pathway" evidence=IEA] [GO:0000815
"ESCRT III complex" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0015031 EMBL:BN001301 GO:GO:0000815 OMA:MEWLFGK GO:GO:0070676
EnsemblFungi:CADANIAT00007700 Uniprot:C8V2X5
Length = 226
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 61/105 (58%), Positives = 80/105 (76%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
+EW FG+++TP E LRK+QRAL++ R+LDRE+ +E QEKKLI DIKK AK GQ+ + K
Sbjct: 4 VEWAFGKRMTPAERLRKHQRALDRTQRELDRERTKLENQEKKLIQDIKKSAKNGQIGACK 63
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
I AKDLVRTR+Y +KF M+ +QA+SL+IQT+RS M SM G
Sbjct: 64 IQAKDLVRTRRYIQKFYQMRTQLQAISLRIQTVRSNEQMMQSMKG 108
>SGD|S000001485 [details] [associations]
symbol:DID4 "Class E Vps protein of the ESCRT-III complex"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0070676 "intralumenal vesicle formation"
evidence=IMP] [GO:0015031 "protein transport" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016020
"membrane" evidence=IEA] [GO:0043162 "ubiquitin-dependent protein
catabolic process via the multivesicular body sorting pathway"
evidence=IC] [GO:0010008 "endosome membrane" evidence=IEA]
[GO:0045053 "protein retention in Golgi apparatus" evidence=IMP]
[GO:0000815 "ESCRT III complex" evidence=IDA] [GO:0045324 "late
endosome to vacuole transport" evidence=IPI] [GO:0006810
"transport" evidence=IEA] [GO:0005768 "endosome" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 SGD:S000001485 GO:GO:0015031
EMBL:BK006944 GO:GO:0045324 GO:GO:0000815 eggNOG:COG5491
HOGENOM:HOG000177218 KO:K12191 OMA:MEWLFGK
GeneTree:ENSGT00550000074737 GO:GO:0043162 OrthoDB:EOG4WT0M1
GO:GO:0045053 EMBL:Z28002 PIR:S37812 RefSeq:NP_012924.2 PDB:2V6X
PDBsum:2V6X ProteinModelPortal:P36108 SMR:P36108 DIP:DIP-1916N
IntAct:P36108 MINT:MINT-404147 STRING:P36108 PaxDb:P36108
EnsemblFungi:YKL002W GeneID:853868 KEGG:sce:YKL002W CYGD:YKL002w
EvolutionaryTrace:P36108 NextBio:975133 Genevestigator:P36108
GermOnline:YKL002W GO:GO:0070676 Uniprot:P36108
Length = 232
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 57/102 (55%), Positives = 80/102 (78%)
Query: 2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
EW+FG+ +TP+E L+KNQRAL + R+L+REK+ +E Q+KKL+++IKK AK GQ+ + K+
Sbjct: 5 EWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKV 64
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
AKDLVRTR Y +KF MKA +QA+SL+IQ +RS + M SM
Sbjct: 65 QAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSM 106
>TAIR|locus:2054612 [details] [associations]
symbol:VPS2.1 species:3702 "Arabidopsis thaliana"
[GO:0015031 "protein transport" evidence=IEA;IMP] [GO:0016192
"vesicle-mediated transport" evidence=ISS] [GO:0000815 "ESCRT III
complex" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005771 "multivesicular body" evidence=IDA] [GO:0006944
"cellular membrane fusion" evidence=RCA] [GO:0009644 "response to
high light intensity" evidence=RCA] [GO:0010200 "response to
chitin" evidence=RCA] [GO:0042542 "response to hydrogen peroxide"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR005024 Pfam:PF03357 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0015031 GO:GO:0005771 GO:GO:0000815
eggNOG:COG5491 KO:K12191 OMA:MEWLFGK EMBL:AC006420 EMBL:AY090953
EMBL:AY088685 EMBL:AJ628449 EMBL:AJ628450 EMBL:AJ628451
EMBL:AJ628452 EMBL:AJ628453 EMBL:AJ628454 EMBL:AJ628455
EMBL:AJ628456 EMBL:AJ628457 EMBL:AJ628458 EMBL:AJ628459
EMBL:AJ628460 EMBL:AJ628461 EMBL:AJ628462 EMBL:AJ628463
EMBL:AJ628464 EMBL:AJ628465 EMBL:AJ628466 EMBL:AJ628467
EMBL:AJ628468 EMBL:AJ628469 EMBL:AJ628470 EMBL:AJ628471
EMBL:AJ628472 EMBL:AJ628473 EMBL:AJ628474 EMBL:AJ628475
EMBL:AJ628476 EMBL:AJ628477 EMBL:AJ628478 EMBL:AJ628479
EMBL:AJ628480 EMBL:AJ628481 EMBL:AJ628482 EMBL:AJ628483
EMBL:AJ628484 EMBL:AJ628485 EMBL:AJ628486 EMBL:AJ628487
EMBL:AJ628488 EMBL:AJ628489 EMBL:AJ628490 EMBL:AJ628491
EMBL:AJ628492 EMBL:AJ628493 EMBL:AJ628494 EMBL:AJ628495
EMBL:AJ628496 EMBL:AJ628497 EMBL:AJ628498 EMBL:AJ628499
EMBL:AJ628500 EMBL:AJ628501 EMBL:AJ628502 EMBL:AJ628503
EMBL:AJ628504 EMBL:AJ628505 EMBL:AJ628506 EMBL:AJ628507
EMBL:AJ628508 EMBL:AJ628509 EMBL:AJ628510 EMBL:AJ628511
EMBL:AJ628512 EMBL:AJ628513 EMBL:AJ628514 EMBL:AJ628515
EMBL:AJ628516 EMBL:AJ628517 EMBL:AJ628518 EMBL:AJ628519
EMBL:AJ628520 EMBL:AJ628521 EMBL:AJ628522 EMBL:AJ628523
EMBL:AJ628524 EMBL:AJ628525 EMBL:AJ628526 EMBL:AJ628527
EMBL:AJ628528 EMBL:AJ628529 EMBL:AJ628530 EMBL:AJ628531
EMBL:AJ628532 EMBL:AJ628533 EMBL:AJ628534 EMBL:AJ628535
EMBL:AJ628536 EMBL:AJ628537 EMBL:AJ628538 EMBL:AJ628539
EMBL:AJ628540 EMBL:AJ628541 EMBL:AJ628542 EMBL:AJ628543
EMBL:AJ628544 EMBL:AJ628545 EMBL:AJ628546 IPI:IPI00528753
PIR:D84478 RefSeq:NP_565336.1 UniGene:At.20774
ProteinModelPortal:Q9SKI2 SMR:Q9SKI2 IntAct:Q9SKI2 STRING:Q9SKI2
PaxDb:Q9SKI2 PRIDE:Q9SKI2 EnsemblPlants:AT2G06530.1 GeneID:815211
KEGG:ath:AT2G06530 TAIR:At2g06530 InParanoid:Q9SKI2
PhylomeDB:Q9SKI2 ProtClustDB:CLSN2688018 Genevestigator:Q9SKI2
Uniprot:Q9SKI2
Length = 225
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 56/105 (53%), Positives = 84/105 (80%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M +FG++ TP E+LR+N+R L+K++R+++RE+Q ++ QEKKLI +IKK AK+GQM +VK
Sbjct: 2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+MAKDL+RTR +KF +K+ +Q VSL+IQTL+S AM ++M G
Sbjct: 62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKG 106
>POMBASE|SPAC4F8.01 [details] [associations]
symbol:did4 "ESCRT III complex subunit Did4" species:4896
"Schizosaccharomyces pombe" [GO:0000815 "ESCRT III complex"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006900 "membrane
budding" evidence=IC] [GO:0043328 "protein targeting to vacuole
involved in ubiquitin-dependent protein catabolic process via the
multivesicular body sorting pathway" evidence=IMP] [GO:0045053
"protein retention in Golgi apparatus" evidence=ISO] [GO:0045324
"late endosome to vacuole transport" evidence=IMP]
InterPro:IPR005024 Pfam:PF03357 PomBase:SPAC4F8.01 EMBL:CU329670
GO:GO:0000815 GO:GO:0043328 eggNOG:COG5491 HOGENOM:HOG000177218
KO:K12191 OMA:MEWLFGK GO:GO:0006900 PIR:T38831 RefSeq:NP_593871.3
ProteinModelPortal:O14177 STRING:O14177 EnsemblFungi:SPAC4F8.01.1
GeneID:2543521 KEGG:spo:SPAC4F8.01 OrthoDB:EOG4WT0M1
NextBio:20804531 GO:GO:0045053 Uniprot:O14177
Length = 210
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 47/103 (45%), Positives = 69/103 (66%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
WLFG +P+E LR +QR+L +A R+LDRE+ ++Q+E+ LI +IK AK G + +I
Sbjct: 6 WLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQ 65
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
A+DL+R R KK M K +QA+SL++QT+R+ M SM G
Sbjct: 66 ARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRG 108
>DICTYBASE|DDB_G0290087 [details] [associations]
symbol:vps2A "SNF7 family protein" species:44689
"Dictyostelium discoideum" [GO:0000815 "ESCRT III complex"
evidence=ISS] [GO:0015031 "protein transport" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016020
"membrane" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005768 "endosome" evidence=IEA] [GO:0010008 "endosome
membrane" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
dictyBase:DDB_G0290087 GO:GO:0015031 GenomeReviews:CM000154_GR
GO:GO:0000815 eggNOG:COG5491 KO:K12191 EMBL:AAFI02000152
RefSeq:XP_635908.2 ProteinModelPortal:Q54GK9 STRING:Q54GK9
EnsemblProtists:DDB0234032 GeneID:8627474 KEGG:ddi:DDB_G0290087
OMA:QDMFEDD Uniprot:Q54GK9
Length = 206
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 37/103 (35%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M + G K TPE+ L+ ++R L+K R++DRE ++ E++ I IK++AK G+ + K
Sbjct: 1 MSFFGGNKKTPEQELKDSKRELSKGQREMDRELNRLKIVEQEYIGKIKQLAKAGRNDEAK 60
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
MA DLV+ R ++ K + AVS K T+++ MA++M
Sbjct: 61 RMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAM 103
>UNIPROTKB|I3LSS2 [details] [associations]
symbol:CHMP2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357 GO:GO:0005829
GO:GO:0015031 GeneTree:ENSGT00550000074737
Ensembl:ENSSSCT00000030728 OMA:FITMRAN Uniprot:I3LSS2
Length = 167
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 34/49 (69%), Positives = 45/49 (91%)
Query: 57 ESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
++V+IMAKDLVRTR+Y +KF++M+ANIQAVSLKIQTL+S N+MA +M G
Sbjct: 2 DAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 50
>FB|FBgn0035589 [details] [associations]
symbol:CHMP2B "Charged multivesicular body protein 2b"
species:7227 "Drosophila melanogaster" [GO:0015031 "protein
transport" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
EMBL:AE014296 GO:GO:0015031 GeneTree:ENSGT00550000074737 CTD:25978
eggNOG:NOG268821 KO:K12192 OMA:DPQKTLK EMBL:AY061433
RefSeq:NP_647947.1 UniGene:Dm.850 SMR:Q9VRJ5 STRING:Q9VRJ5
EnsemblMetazoa:FBtr0077166 GeneID:38599 KEGG:dme:Dmel_CG4618
UCSC:CG4618-RA FlyBase:FBgn0035589 InParanoid:Q9VRJ5
OrthoDB:EOG4MPG6C GenomeRNAi:38599 NextBio:809457 Uniprot:Q9VRJ5
Length = 212
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 34/100 (34%), Positives = 64/100 (64%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+FG+K T +E R+N R+L KA RD++RE++ ME++E+KL +I++ A G ++ +I+A
Sbjct: 5 IFGKKPTVKEQQRENDRSLRKATRDIERERRKMEEEERKLELEIRRNAAAGNNDACRILA 64
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
K LV RK + IQ++ + + + + A++++M
Sbjct: 65 KQLVEIRKQKSRTYAAAGKIQSIGYQNKNMGANIALSEAM 104
>TAIR|locus:2163396 [details] [associations]
symbol:VPS2.2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=ISS] [GO:0000815 "ESCRT III complex" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006260
"DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR005024
Pfam:PF03357 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0015031
EMBL:AB017065 EMBL:AB024024 GO:GO:0000815 eggNOG:COG5491
HOGENOM:HOG000177218 KO:K12191 EMBL:AK227410 EMBL:BT005848
IPI:IPI00548186 IPI:IPI00892046 RefSeq:NP_001119371.1
RefSeq:NP_199269.1 UniGene:At.30067 ProteinModelPortal:Q0WTY4
IntAct:Q0WTY4 STRING:Q0WTY4 PaxDb:Q0WTY4 PRIDE:Q0WTY4
EnsemblPlants:AT5G44560.1 GeneID:834483 KEGG:ath:AT5G44560
TAIR:At5g44560 InParanoid:Q0WTY4 OMA:APKGRIG PhylomeDB:Q0WTY4
ProtClustDB:CLSN2916725 Genevestigator:Q0WTY4 Uniprot:Q0WTY4
Length = 222
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/102 (34%), Positives = 61/102 (59%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+F +K TP++ LR ++R + A R ++RE ++ +EK+L+A+IKK AK G + KI+A
Sbjct: 3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+ LVR R+ +A I+ V+ Q L + +++ M G
Sbjct: 63 RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKG 104
>UNIPROTKB|F1NR65 [details] [associations]
symbol:CHMP2B "Charged multivesicular body protein 2b"
species:9031 "Gallus gallus" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005739 GO:GO:0005634 GO:GO:0015031
GeneTree:ENSGT00550000074737 OMA:DPQKTLK IPI:IPI00591923
EMBL:AADN02042324 Ensembl:ENSGALT00000024990 Uniprot:F1NR65
Length = 214
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 35/103 (33%), Positives = 63/103 (61%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDIIKEQNRELRGTQRTITRDRAALEKQEKQLELEIKKMAKTGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>WB|WBGene00020866 [details] [associations]
symbol:T27F7.1 species:6239 "Caenorhabditis elegans"
[GO:0015031 "protein transport" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0015031
GO:GO:0018996 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
eggNOG:COG5491 GeneTree:ENSGT00550000074896 HOGENOM:HOG000177219
KO:K12193 OMA:MSKEMMK EMBL:FO081509 NextBio:881441
RefSeq:NP_494919.1 ProteinModelPortal:Q9GYK4 SMR:Q9GYK4
IntAct:Q9GYK4 STRING:Q9GYK4 PaxDb:Q9GYK4 EnsemblMetazoa:T27F7.1.1
EnsemblMetazoa:T27F7.1.2 EnsemblMetazoa:T27F7.1.3 GeneID:173863
KEGG:cel:CELE_T27F7.1 UCSC:T27F7.1.1 CTD:173863 WormBase:T27F7.1
InParanoid:Q9GYK4 Uniprot:Q9GYK4
Length = 208
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 35/100 (35%), Positives = 63/100 (63%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
LFG+K P+E +R+ QR + + MR LDR+ ++++E+K+ +IK+ AK+G + I+A
Sbjct: 3 LFGKKKDPKEEVRELQRKMRQEMRSLDRQVYSIQREEQKVTKEIKEAAKKGDKDVCLILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
K ++++RK K + KA I +V + +Q + MA S+
Sbjct: 63 KSMIQSRKAISKIHVSKAQINSVIMCMQEQLATIRMAGSL 102
>UNIPROTKB|Q5F3A2 [details] [associations]
symbol:CHMP2B "Charged multivesicular body protein 2b"
species:9031 "Gallus gallus" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031902 "late
endosome membrane" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0031902 GO:GO:0015031 HOGENOM:HOG000177218
CTD:25978 eggNOG:NOG268821 HOVERGEN:HBG102628 KO:K12192
OrthoDB:EOG469QW1 EMBL:AJ851748 IPI:IPI00591923
RefSeq:NP_001025963.1 UniGene:Gga.9706 ProteinModelPortal:Q5F3A2
STRING:Q5F3A2 GeneID:418461 KEGG:gga:418461 InParanoid:Q5F3A2
NextBio:20821640 Uniprot:Q5F3A2
Length = 214
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 34/103 (33%), Positives = 63/103 (61%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QE++L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>TAIR|locus:2024107 [details] [associations]
symbol:VPS2.3 "vacuolar protein sorting-associated
protein 2.3" species:3702 "Arabidopsis thaliana" [GO:0015031
"protein transport" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=ISS] [GO:0000815 "ESCRT III complex"
evidence=ISS] InterPro:IPR005024 Pfam:PF03357 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC003027 GO:GO:0015031 GO:GO:0000815
eggNOG:COG5491 HOGENOM:HOG000177218 KO:K12192 OMA:DPQKTLK
EMBL:AY052238 EMBL:AY060501 IPI:IPI00517467 PIR:D86170
RefSeq:NP_563696.1 UniGene:At.26425 ProteinModelPortal:Q941D5
SMR:Q941D5 IntAct:Q941D5 PRIDE:Q941D5 EnsemblPlants:AT1G03950.1
GeneID:839362 KEGG:ath:AT1G03950 TAIR:At1g03950 InParanoid:Q941D5
PhylomeDB:Q941D5 ProtClustDB:CLSN2687652 Genevestigator:Q941D5
Uniprot:Q941D5
Length = 210
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 30/102 (29%), Positives = 61/102 (59%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
+F +K P E+LR+++R + +A R +++E ++ +EKKL+ +IK+ AK G + KI+A
Sbjct: 3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62
Query: 64 KDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
+ L+R R+ +A ++ ++ Q + + ++A M G
Sbjct: 63 RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQG 104
>DICTYBASE|DDB_G0284769 [details] [associations]
symbol:vps24 "SNF7 family protein" species:44689
"Dictyostelium discoideum" [GO:0000815 "ESCRT III complex"
evidence=ISS] [GO:0015031 "protein transport" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016020
"membrane" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005768 "endosome" evidence=IEA] [GO:0010008 "endosome
membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR005024 Pfam:PF03357
dictyBase:DDB_G0284769 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0015031 GO:GO:0000815 eggNOG:COG5491 KO:K12193 OMA:MSKEMMK
RefSeq:XP_638395.1 ProteinModelPortal:Q54P63 STRING:Q54P63
PRIDE:Q54P63 EnsemblProtists:DDB0234036 GeneID:8624764
KEGG:ddi:DDB_G0284769 InParanoid:Q54P63 ProtClustDB:CLSZ2437297
Uniprot:Q54P63
Length = 207
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 32/88 (36%), Positives = 57/88 (64%)
Query: 5 FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAK 64
F +K TPEE+++K +R L + R LD + + ++ QEKK + IK+ K G +S K +AK
Sbjct: 4 FLKKPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAK 63
Query: 65 DLVRTRKYAKKFMMMKANIQAVSLKIQT 92
++V +RK ++ KA + +VS+++Q+
Sbjct: 64 EIVNSRKAKERIYTAKAQMNSVSMQLQS 91
>UNIPROTKB|Q9UQN3 [details] [associations]
symbol:CHMP2B "Charged multivesicular body protein 2b"
species:9606 "Homo sapiens" [GO:0008219 "cell death" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0031902 "late
endosome membrane" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005829 "cytosol" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
[GO:0016197 "endosomal transport" evidence=TAS] [GO:0005622
"intracellular" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] Reactome:REACT_11123 InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0031902
GO:GO:0015031 GO:GO:0008219 GO:GO:0016197 Orphanet:803
GO:GO:0016044 HOGENOM:HOG000177218 CTD:25978 eggNOG:NOG268821
HOVERGEN:HBG102628 KO:K12192 OMA:DPQKTLK EMBL:AF151842
EMBL:AL080122 EMBL:AK296072 EMBL:CR533456 EMBL:AK222654
EMBL:AC123511 EMBL:AC130885 EMBL:BC001553 IPI:IPI00550181
PIR:T12468 RefSeq:NP_001231573.1 RefSeq:NP_054762.2
UniGene:Hs.476930 PDB:2JQK PDBsum:2JQK ProteinModelPortal:Q9UQN3
SMR:Q9UQN3 IntAct:Q9UQN3 MINT:MINT-1430090 STRING:Q9UQN3
PhosphoSite:Q9UQN3 DMDM:73917746 PaxDb:Q9UQN3 PRIDE:Q9UQN3
DNASU:25978 Ensembl:ENST00000263780 Ensembl:ENST00000471660
GeneID:25978 KEGG:hsa:25978 UCSC:uc003dqp.4 GeneCards:GC03P087360
HGNC:HGNC:24537 HPA:HPA035069 MIM:600795 MIM:609512 MIM:614696
neXtProt:NX_Q9UQN3 Orphanet:275864 PharmGKB:PA142672112
InParanoid:Q9UQN3 PhylomeDB:Q9UQN3 ChiTaRS:CHMP2B
EvolutionaryTrace:Q9UQN3 GenomeRNAi:25978 NextBio:47630
ArrayExpress:Q9UQN3 Bgee:Q9UQN3 CleanEx:HS_CHMP2B
Genevestigator:Q9UQN3 GermOnline:ENSG00000083937 Uniprot:Q9UQN3
Length = 213
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 35/103 (33%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>ZFIN|ZDB-GENE-070628-3 [details] [associations]
symbol:chmp2ba "chromatin modifying protein 2Ba"
species:7955 "Danio rerio" [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357
ZFIN:ZDB-GENE-070628-3 GO:GO:0015031 eggNOG:COG5491
HOGENOM:HOG000177218 GeneTree:ENSGT00550000074737
HOVERGEN:HBG102628 KO:K12192 OrthoDB:EOG469QW1 EMBL:CR361551
IPI:IPI00509438 RefSeq:NP_001116769.1 UniGene:Dr.144266
Ensembl:ENSDART00000055866 GeneID:569532 KEGG:dre:569532
OMA:SADEEEC NextBio:20889725 Uniprot:B0UXH0
Length = 216
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/103 (32%), Positives = 63/103 (61%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ + L R + R++ +E+QE+++ +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDIIKEQSKELRGTQRQITRDRAALERQERQMEMEIKKMAKTGNREACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
I+AK LV+ RK + + + + ++S + + + SQ MA +M
Sbjct: 60 ILAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>ZFIN|ZDB-GENE-040426-2539 [details] [associations]
symbol:chmp2bb "chromatin modifying protein 2Bb"
species:7955 "Danio rerio" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 ZFIN:ZDB-GENE-040426-2539
GO:GO:0015031 GeneTree:ENSGT00550000074737 EMBL:CR762462
IPI:IPI00493945 Ensembl:ENSDART00000125682 ArrayExpress:F1QLN0
Bgee:F1QLN0 Uniprot:F1QLN0
Length = 263
Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 34/109 (31%), Positives = 65/109 (59%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ + L R + R++ +E+QEK+L +IKKMAK G ++ K
Sbjct: 50 MTSLFKKK-TVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACK 108
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
++AK LV+ RK + + + + ++S + + + SQ MA +M +T
Sbjct: 109 VLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKT 157
>UNIPROTKB|Q3SX42 [details] [associations]
symbol:CHMP2B "Charged multivesicular body protein 2b"
species:9913 "Bos taurus" [GO:0031902 "late endosome membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0019904
"protein domain specific binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] InterPro:IPR005024
Pfam:PF03357 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634
GO:GO:0031902 GO:GO:0015031 HOGENOM:HOG000177218
GeneTree:ENSGT00550000074737 EMBL:BC104514 IPI:IPI00696266
RefSeq:NP_001030549.1 UniGene:Bt.19768 ProteinModelPortal:Q3SX42
STRING:Q3SX42 Ensembl:ENSBTAT00000010436 GeneID:615954
KEGG:bta:615954 CTD:25978 eggNOG:NOG268821 HOVERGEN:HBG102628
InParanoid:Q3SX42 KO:K12192 OMA:DPQKTLK OrthoDB:EOG469QW1
NextBio:20899880 Uniprot:Q3SX42
Length = 213
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/103 (33%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>UNIPROTKB|E2R417 [details] [associations]
symbol:CHMP2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357 GO:GO:0005739
GO:GO:0005634 GO:GO:0015031 GeneTree:ENSGT00550000074737 CTD:25978
KO:K12192 OMA:DPQKTLK EMBL:AAEX03016386 EMBL:AAEX03016387
RefSeq:XP_544799.3 ProteinModelPortal:E2R417 SMR:E2R417
Ensembl:ENSCAFT00000012434 GeneID:487675 KEGG:cfa:487675
NextBio:20861232 Uniprot:E2R417
Length = 213
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/103 (33%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>UNIPROTKB|F2Z5Q1 [details] [associations]
symbol:CHMP2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0005739 GO:GO:0005634
GO:GO:0015031 GeneTree:ENSGT00550000074737 OMA:DPQKTLK
EMBL:CU633644 ProteinModelPortal:F2Z5Q1 SMR:F2Z5Q1
Ensembl:ENSSSCT00000013128 Uniprot:F2Z5Q1
Length = 213
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/103 (33%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>MGI|MGI:1916192 [details] [associations]
symbol:Chmp2b "charged multivesicular body protein 2B"
species:10090 "Mus musculus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005768 "endosome" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=ISO] InterPro:IPR005024 Pfam:PF03357
MGI:MGI:1916192 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634
GO:GO:0031902 GO:GO:0015031 HOGENOM:HOG000177218
GeneTree:ENSGT00550000074737 CTD:25978 eggNOG:NOG268821
HOVERGEN:HBG102628 KO:K12192 OMA:DPQKTLK OrthoDB:EOG469QW1
ChiTaRS:CHMP2B EMBL:AK004506 EMBL:AK084111 EMBL:BC042626
EMBL:BC055809 IPI:IPI00222386 RefSeq:NP_081155.1 UniGene:Mm.432944
ProteinModelPortal:Q8BJF9 SMR:Q8BJF9 STRING:Q8BJF9
PhosphoSite:Q8BJF9 PaxDb:Q8BJF9 PRIDE:Q8BJF9
Ensembl:ENSMUST00000004965 GeneID:68942 KEGG:mmu:68942
UCSC:uc007zqj.1 InParanoid:Q8BJF9 NextBio:328237 Bgee:Q8BJF9
CleanEx:MM_CHMP2B Genevestigator:Q8BJF9
GermOnline:ENSMUSG00000004843 Uniprot:Q8BJF9
Length = 213
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/103 (33%), Positives = 62/103 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ +
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACR 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++AK LV RK + + + + ++S + + + SQ MA +M
Sbjct: 60 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
>WB|WBGene00007216 [details] [associations]
symbol:C01A2.4 species:6239 "Caenorhabditis elegans"
[GO:0015031 "protein transport" evidence=IEA] InterPro:IPR005024
Pfam:PF03357 GO:GO:0015031 eggNOG:COG5491 HOGENOM:HOG000177218
GeneTree:ENSGT00550000074737 KO:K12192 EMBL:Z81029 PIR:T18795
RefSeq:NP_493357.2 ProteinModelPortal:O02208 SMR:O02208
IntAct:O02208 STRING:O02208 PaxDb:O02208 EnsemblMetazoa:C01A2.4.1
EnsemblMetazoa:C01A2.4.2 GeneID:182050 KEGG:cel:CELE_C01A2.4
UCSC:C01A2.4 CTD:182050 WormBase:C01A2.4 InParanoid:O02208
OMA:EVERNRT NextBio:916198 Uniprot:O02208
Length = 207
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 33/96 (34%), Positives = 57/96 (59%)
Query: 8 KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLV 67
K P+E+ R N+R L K RDL+ +++ M+++EK+L +IKK+A +G ++ + +AK LV
Sbjct: 6 KPDPKELERANKRELRKTNRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHLAKQLV 65
Query: 68 RTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+ R K + M A I V + ++S M +M
Sbjct: 66 QLRNQKTKSIGMSARISGVQAQNSHMQSMAKMGSAM 101
>UNIPROTKB|C9J0A7 [details] [associations]
symbol:CHMP2B "Charged multivesicular body protein 2b"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
HOGENOM:HOG000177218 EMBL:AC123511 EMBL:AC130885 HGNC:HGNC:24537
ChiTaRS:CHMP2B IPI:IPI00947040 ProteinModelPortal:C9J0A7
STRING:C9J0A7 PRIDE:C9J0A7 Ensembl:ENST00000494980
ArrayExpress:C9J0A7 Bgee:C9J0A7 Uniprot:C9J0A7
Length = 183
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 41/114 (35%), Positives = 69/114 (60%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVK 60
M LF +K T ++++++ R L R + R++ +E+QEK+L +IKKMAK G E+ K
Sbjct: 1 MASLFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 59
Query: 61 IMAKDLVRTRKYAKKFMMMKANIQAVSLKI---QTLRS-QNAMADSMIGQLETT 110
++AK LV RK + A +QAV+ K+ +TL++ QN ++M ++E T
Sbjct: 60 VLAKQLVHLRKQKTRTF---ATMQAVNKKMDPQKTLQTMQNFQKENM--KMEMT 108
>POMBASE|SPAC9E9.14 [details] [associations]
symbol:vps24 "ESCRT III complex subunit Vps24"
species:4896 "Schizosaccharomyces pombe" [GO:0000815 "ESCRT III
complex" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006900 "membrane budding" evidence=IC]
[GO:0012505 "endomembrane system" evidence=IEA] [GO:0043328
"protein targeting to vacuole involved in ubiquitin-dependent
protein catabolic process via the multivesicular body sorting
pathway" evidence=IMP] [GO:0045324 "late endosome to vacuole
transport" evidence=IMP] InterPro:IPR005024 Pfam:PF03357
PomBase:SPAC9E9.14 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0012505 GO:GO:0000815 GO:GO:0043328 eggNOG:COG5491
HOGENOM:HOG000177219 KO:K12193 GO:GO:0006900 OMA:MKIVNNL PIR:T39221
RefSeq:NP_594587.1 ProteinModelPortal:O14296 STRING:O14296
EnsemblFungi:SPAC9E9.14.1 GeneID:2542234 KEGG:spo:SPAC9E9.14
OrthoDB:EOG4F7RVD NextBio:20803301 Uniprot:O14296
Length = 231
Score = 142 (55.0 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 34/111 (30%), Positives = 63/111 (56%)
Query: 3 WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIM 62
+ FG TP+E RK Q + K R LDR+ H++ KK +K++AK+ + +++I+
Sbjct: 7 YFFGP--TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRIL 64
Query: 63 AKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLETTLPI 113
AK++ R ++ K+ KA + ++SL+ L Q AM + G ++++ I
Sbjct: 65 AKEIARANRHGKRLAESKALLGSLSLQ---LNDQMAML-KIQGTMQSSTKI 111
>UNIPROTKB|E1C230 [details] [associations]
symbol:VPS24 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0015031 "protein transport" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
GeneTree:ENSGT00550000074896 KO:K12193 OMA:MSKEMMK CTD:40542
EMBL:AADN02014773 IPI:IPI00579079 RefSeq:XP_420858.2
UniGene:Gga.12935 Ensembl:ENSGALT00000025484 GeneID:422918
KEGG:gga:422918 NextBio:20825474 Uniprot:E1C230
Length = 218
Score = 134 (52.2 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 31/102 (30%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ IK AK+GQ + I
Sbjct: 3 LFGKTPEKPPKELVNEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCVI 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+L+R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 LAKELIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 104
>RGD|708556 [details] [associations]
symbol:Chmp3 "charged multivesicular body protein 3"
species:10116 "Rattus norvegicus" [GO:0000815 "ESCRT III complex"
evidence=IC] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0005546
"phosphatidylinositol-4,5-bisphosphate binding" evidence=IMP]
[GO:0005769 "early endosome" evidence=IDA] [GO:0005770 "late
endosome" evidence=IDA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0008333 "endosome to
lysosome transport" evidence=IMP] [GO:0015031 "protein transport"
evidence=IEA] [GO:0030496 "midbody" evidence=IDA] [GO:0031902 "late
endosome membrane" evidence=IEA] [GO:0051036 "regulation of
endosome size" evidence=IMP] InterPro:IPR005024 Pfam:PF03357
RGD:708556 GO:GO:0005829 GO:GO:0031902 GO:GO:0015031 GO:GO:0005770
GO:GO:0007049 GO:GO:0000910 GO:GO:0005546 GO:GO:0008333
GO:GO:0030496 GO:GO:0005769 GO:GO:0051036 GO:GO:0000815
eggNOG:COG5491 CTD:51652 GeneTree:ENSGT00550000074896
HOGENOM:HOG000177219 HOVERGEN:HBG107031 KO:K12193 OMA:MSKEMMK
OrthoDB:EOG4VT5ZB EMBL:AY150169 IPI:IPI00192445 RefSeq:NP_758834.1
UniGene:Rn.162751 ProteinModelPortal:Q8CGS4 SMR:Q8CGS4
STRING:Q8CGS4 PhosphoSite:Q8CGS4 Ensembl:ENSRNOT00000010253
GeneID:282834 KEGG:rno:282834 UCSC:RGD:708556 InParanoid:Q8CGS4
NextBio:624897 Genevestigator:Q8CGS4 GermOnline:ENSRNOG00000007356
Uniprot:Q8CGS4
Length = 223
Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/102 (28%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ E +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+++R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 104
>MGI|MGI:1913950 [details] [associations]
symbol:Chmp3 "charged multivesicular body protein 3"
species:10090 "Mus musculus" [GO:0000910 "cytokinesis"
evidence=ISO] [GO:0005546 "phosphatidylinositol-4,5-bisphosphate
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005768 "endosome" evidence=IEA] [GO:0005769 "early endosome"
evidence=ISO] [GO:0005770 "late endosome" evidence=ISO] [GO:0006810
"transport" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008333 "endosome to lysosome transport" evidence=ISO]
[GO:0015031 "protein transport" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030496 "midbody" evidence=ISO]
[GO:0051036 "regulation of endosome size" evidence=ISO] [GO:0051301
"cell division" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
MGI:MGI:1913950 GO:GO:0005829 GO:GO:0031902 GO:GO:0015031
GO:GO:0007049 GO:GO:0000910 GO:GO:0005546 GO:GO:0008333
GO:GO:0030496 GO:GO:0005769 GO:GO:0051036 eggNOG:COG5491 CTD:51652
GeneTree:ENSGT00550000074896 HOGENOM:HOG000177219
HOVERGEN:HBG107031 KO:K12193 OMA:MSKEMMK OrthoDB:EOG4VT5ZB
EMBL:AK009414 EMBL:AK014818 EMBL:AK016677 EMBL:AK018611
EMBL:AK083562 EMBL:BC049964 IPI:IPI00347275 RefSeq:NP_080059.2
UniGene:Mm.181278 ProteinModelPortal:Q9CQ10 SMR:Q9CQ10
IntAct:Q9CQ10 STRING:Q9CQ10 PhosphoSite:Q9CQ10 PaxDb:Q9CQ10
PRIDE:Q9CQ10 Ensembl:ENSMUST00000059462 Ensembl:ENSMUST00000065364
GeneID:66700 KEGG:mmu:66700 UCSC:uc009cgw.1 InParanoid:Q9CQ10
NextBio:322405 Bgee:Q9CQ10 CleanEx:MM_VPS24 Genevestigator:Q9CQ10
GermOnline:ENSMUSG00000053119 Uniprot:Q9CQ10
Length = 224
Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/102 (28%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ E +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+++R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 104
>UNIPROTKB|F1NVQ6 [details] [associations]
symbol:CHMP1B "Charged multivesicular body protein 1b"
species:9031 "Gallus gallus" [GO:0015031 "protein transport"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
GeneTree:ENSGT00550000074957 IPI:IPI00582566 OMA:EHLFNLK
EMBL:AADN02013150 Ensembl:ENSGALT00000006500 Uniprot:F1NVQ6
Length = 199
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/95 (29%), Positives = 54/95 (56%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L+R + +++EK A IKK ++G ME +I A++ +R + A
Sbjct: 4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>UNIPROTKB|Q5ZKX1 [details] [associations]
symbol:CHMP1B "Charged multivesicular body protein 1b"
species:9031 "Gallus gallus" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031902 "late
endosome membrane" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0031902 GO:GO:0015031 CTD:57132 eggNOG:COG5491
HOGENOM:HOG000241980 HOVERGEN:HBG080200 KO:K12197 OrthoDB:EOG4PVP0T
EMBL:AJ719963 IPI:IPI00582566 RefSeq:NP_001006428.1
UniGene:Gga.6697 ProteinModelPortal:Q5ZKX1 STRING:Q5ZKX1
GeneID:422143 KEGG:gga:422143 InParanoid:Q5ZKX1 NextBio:20824822
Uniprot:Q5ZKX1
Length = 199
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/95 (29%), Positives = 54/95 (56%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L+R + +++EK A IKK ++G ME +I A++ +R + A
Sbjct: 4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>UNIPROTKB|I3LFQ9 [details] [associations]
symbol:CHMP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015031 "protein transport" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
GeneTree:ENSGT00550000074896 KO:K12193 OMA:MSKEMMK EMBL:CU467088
RefSeq:XP_003354782.1 Ensembl:ENSSSCT00000031530 GeneID:100522249
KEGG:ssc:100522249 Uniprot:I3LFQ9
Length = 221
Score = 129 (50.5 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 28/102 (27%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+++R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 104
>UNIPROTKB|Q58CS7 [details] [associations]
symbol:CHMP3 "Charged multivesicular body protein 3"
species:9913 "Bos taurus" [GO:0031902 "late endosome membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0031902 GO:GO:0015031 eggNOG:COG5491
EMBL:BT021870 EMBL:BC114072 IPI:IPI00688889 RefSeq:NP_001030223.2
UniGene:Bt.28232 ProteinModelPortal:Q58CS7 SMR:Q58CS7 STRING:Q58CS7
Ensembl:ENSBTAT00000018071 GeneID:507722 KEGG:bta:507722 CTD:51652
GeneTree:ENSGT00550000074896 HOGENOM:HOG000177219
HOVERGEN:HBG107031 InParanoid:Q58CS7 KO:K12193 OMA:MSKEMMK
OrthoDB:EOG4VT5ZB NextBio:20868194 Uniprot:Q58CS7
Length = 222
Score = 129 (50.5 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 28/102 (27%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+++R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 104
>UNIPROTKB|Q7LBR1 [details] [associations]
symbol:CHMP1B "Charged multivesicular body protein 1b"
species:9606 "Homo sapiens" [GO:0007049 "cell cycle" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR005024 Pfam:PF03357
GO:GO:0005829 GO:GO:0051301 GO:GO:0031902 GO:GO:0015031
GO:GO:0007049 CTD:57132 HOVERGEN:HBG080200 KO:K12197 OMA:EHLFNLK
EMBL:AF306520 EMBL:AF281064 EMBL:BC065933 EMBL:BC012733
IPI:IPI00156984 RefSeq:NP_065145.2 UniGene:Hs.656244 PDB:3EAB
PDBsum:3EAB ProteinModelPortal:Q7LBR1 SMR:Q7LBR1 DIP:DIP-48534N
IntAct:Q7LBR1 MINT:MINT-6946813 PhosphoSite:Q7LBR1 DMDM:73917735
PeptideAtlas:Q7LBR1 PRIDE:Q7LBR1 DNASU:57132
Ensembl:ENST00000526991 GeneID:57132 KEGG:hsa:57132 UCSC:uc002kqe.3
GeneCards:GC18P011851 HGNC:HGNC:24287 MIM:606486 neXtProt:NX_Q7LBR1
PharmGKB:PA142672110 EvolutionaryTrace:Q7LBR1 GenomeRNAi:57132
NextBio:63047 ArrayExpress:Q7LBR1 Bgee:Q7LBR1 CleanEx:HS_C18orf2
CleanEx:HS_CHMP1B Genevestigator:Q7LBR1 Uniprot:Q7LBR1
Length = 199
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L R + +++EK A IKK ++G ME +I A++ +R + A
Sbjct: 4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>UNIPROTKB|Q9Y3E7 [details] [associations]
symbol:CHMP3 "Charged multivesicular body protein 3"
species:9606 "Homo sapiens" [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0031902 "late endosome membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005829 "cytosol"
evidence=TAS] [GO:0016044 "cellular membrane organization"
evidence=TAS] [GO:0016197 "endosomal transport" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR005024 Pfam:PF03357 GO:GO:0005829
GO:GO:0006915 EMBL:CH471053 GO:GO:0031902 GO:GO:0015031
GO:GO:0016197 GO:GO:0007049 GO:GO:0000910 GO:GO:0005546
GO:GO:0008333 GO:GO:0030496 GO:GO:0005769 GO:GO:0051036
GO:GO:0016044 EMBL:AC064848 eggNOG:COG5491 CTD:51652
HOGENOM:HOG000177219 HOVERGEN:HBG107031 KO:K12193 OMA:MSKEMMK
OrthoDB:EOG4VT5ZB EMBL:AF219226 EMBL:AY364249 EMBL:AF151907
EMBL:AK290725 EMBL:AK294389 EMBL:AK312353 EMBL:AK315835
EMBL:AC015971 EMBL:AC068288 EMBL:BC004419 IPI:IPI00100673
IPI:IPI00478935 IPI:IPI00979305 IPI:IPI00981241
RefSeq:NP_001005753.1 RefSeq:NP_001180446.1 RefSeq:NP_001185883.1
RefSeq:NP_057163.1 UniGene:Hs.591582 PDB:2GD5 PDB:2XZE PDB:3FRT
PDB:3FRV PDBsum:2GD5 PDBsum:2XZE PDBsum:3FRT PDBsum:3FRV
ProteinModelPortal:Q9Y3E7 SMR:Q9Y3E7 DIP:DIP-48532N IntAct:Q9Y3E7
MINT:MINT-1185988 STRING:Q9Y3E7 PhosphoSite:Q9Y3E7 DMDM:73917763
PaxDb:Q9Y3E7 PRIDE:Q9Y3E7 DNASU:51652 Ensembl:ENST00000263856
Ensembl:ENST00000409225 Ensembl:ENST00000409727
Ensembl:ENST00000439940 GeneID:100526767 GeneID:51652
KEGG:hsa:100526767 KEGG:hsa:51652 UCSC:uc002srj.3 CTD:100526767
GeneCards:GC02M086730 HGNC:HGNC:29865 HPA:HPA015673 MIM:610052
neXtProt:NX_Q9Y3E7 PharmGKB:PA134920495 PhylomeDB:Q9Y3E7
ChiTaRS:CHMP3 EvolutionaryTrace:Q9Y3E7 NextBio:55614 Bgee:Q9Y3E7
CleanEx:HS_VPS24 Genevestigator:Q9Y3E7 GermOnline:ENSG00000115561
Uniprot:Q9Y3E7
Length = 222
Score = 128 (50.1 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 28/102 (27%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 3 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+++R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 104
>UNIPROTKB|Q5E994 [details] [associations]
symbol:CHMP1B "Charged multivesicular body protein 1b"
species:9913 "Bos taurus" [GO:0031902 "late endosome membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0005829 GO:GO:0051301
GO:GO:0031902 GO:GO:0015031 GO:GO:0007049 CTD:57132
HOVERGEN:HBG080200 KO:K12197 EMBL:BT021026 EMBL:BC105547
IPI:IPI00713299 RefSeq:NP_001014904.1 UniGene:Bt.803
ProteinModelPortal:Q5E994 GeneID:512033 KEGG:bta:512033
NextBio:20870218 Uniprot:Q5E994
Length = 199
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L R + +++EK A IKK ++G ME +I A++ +R + A
Sbjct: 4 MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>RGD|1593500 [details] [associations]
symbol:Chmp1b "charged multivesicular body protein 1B"
species:10116 "Rattus norvegicus" [GO:0000910 "cytokinesis"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] InterPro:IPR005024 Pfam:PF03357 RGD:1593500
GO:GO:0015031 eggNOG:COG5491 HOGENOM:HOG000241980
HOVERGEN:HBG080200 OrthoDB:EOG4PVP0T EMBL:BC168175 IPI:IPI00764309
UniGene:Rn.39132 STRING:B4F787 UCSC:RGD:1593500
Genevestigator:B4F787 Uniprot:B4F787
Length = 230
Score = 128 (50.1 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 28/95 (29%), Positives = 54/95 (56%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L+R + +++EK A IKK ++G ME +I A++ +R + A
Sbjct: 35 MEKHLFNLKFAAKELNRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 94
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 95 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 129
>MGI|MGI:1914314 [details] [associations]
symbol:Chmp1b "charged multivesicular body protein 1B"
species:10090 "Mus musculus" [GO:0000910 "cytokinesis"
evidence=ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005768 "endosome"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0051301 "cell
division" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
MGI:MGI:1914314 GO:GO:0005829 GO:GO:0051301 GO:GO:0031902
GO:GO:0015031 GO:GO:0007049 EMBL:AK014091 EMBL:AK151071
EMBL:CT010307 EMBL:BC002229 IPI:IPI00117187 RefSeq:NP_077152.1
UniGene:Mm.73777 ProteinModelPortal:Q99LU0 SMR:Q99LU0 IntAct:Q99LU0
STRING:Q99LU0 PhosphoSite:Q99LU0 PaxDb:Q99LU0 PRIDE:Q99LU0
GeneID:67064 KEGG:mmu:67064 UCSC:uc008flu.2 CTD:57132
eggNOG:COG5491 HOGENOM:HOG000241980 HOVERGEN:HBG080200
InParanoid:Q99LU0 KO:K12197 OrthoDB:EOG4PVP0T NextBio:323464
CleanEx:MM_CHMP1B Genevestigator:Q99LU0
GermOnline:ENSMUSG00000031242 Uniprot:Q99LU0
Length = 199
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L+R + +++EK A IKK ++G ME +I A++ +R +
Sbjct: 4 MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>ZFIN|ZDB-GENE-030131-8370 [details] [associations]
symbol:chmp1b "chromatin modifying protein 1B"
species:7955 "Danio rerio" [GO:0015031 "protein transport"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031902 "late endosome membrane" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 ZFIN:ZDB-GENE-030131-8370
GO:GO:0005829 GO:GO:0031902 GO:GO:0015031 CTD:57132 eggNOG:COG5491
HOVERGEN:HBG080200 KO:K12197 OrthoDB:EOG4PVP0T EMBL:AY398326
EMBL:BC045934 EMBL:BC065462 EMBL:BC067569 IPI:IPI00508359
RefSeq:NP_956308.1 UniGene:Dr.8435 ProteinModelPortal:Q7ZVB1
STRING:Q7ZVB1 PRIDE:Q7ZVB1 GeneID:336426 KEGG:dre:336426
InParanoid:Q7ZVB1 OMA:EHLFNLK NextBio:20811727 Uniprot:Q7ZVB1
Length = 199
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/91 (28%), Positives = 50/91 (54%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L R + +++EK +KK ++G ME +I A++ +R + +
Sbjct: 4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSV 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
F+ M A + AV+ ++QT + N + SM G
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMNQVTKSMAG 94
>UNIPROTKB|E2RDX0 [details] [associations]
symbol:CHMP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015031 "protein transport" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
GeneTree:ENSGT00550000074896 OMA:NIDRQIR EMBL:AAEX03010929
Ensembl:ENSCAFT00000011979 NextBio:20851539 Uniprot:E2RDX0
Length = 292
Score = 129 (50.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 28/102 (27%), Positives = 62/102 (60%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P+E++ + + K MR +DR+ + ++++E+K+ +K AK+GQ + +
Sbjct: 74 LFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVV 133
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK+++R+RK K KA++ +V + ++ + +A S+
Sbjct: 134 LAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 175
>MGI|MGI:1914278 [details] [associations]
symbol:2610002M06Rik "RIKEN cDNA 2610002M06 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005768 "endosome"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357 MGI:MGI:1914278
GO:GO:0005829 GO:GO:0051301 GO:GO:0031902 GO:GO:0015031
GO:GO:0007049 HOVERGEN:HBG080200 KO:K12197
GermOnline:ENSMUSG00000031242 EMBL:AK011297 EMBL:AK019383
EMBL:AL669851 EMBL:AL844897 EMBL:BC016070 IPI:IPI00173121
RefSeq:NP_080197.2 UniGene:Mm.37274 ProteinModelPortal:Q9CQD4
SMR:Q9CQD4 STRING:Q9CQD4 PRIDE:Q9CQD4 Ensembl:ENSMUST00000120722
GeneID:67028 KEGG:mmu:67028 UCSC:uc009ucj.2
GeneTree:ENSGT00550000074957 InParanoid:Q9CQD4 NextBio:323352
Bgee:Q9CQD4 CleanEx:MM_2610002M06RIK Genevestigator:Q9CQD4
Uniprot:Q9CQD4
Length = 199
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L+R + +++EK A IKK ++G E +I A++ +R + A
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>RGD|1566265 [details] [associations]
symbol:RGD1566265 "similar to RIKEN cDNA 2610002M06"
species:10116 "Rattus norvegicus" [GO:0015031 "protein transport"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357 RGD:1566265
GO:GO:0015031 KO:K12197 GeneTree:ENSGT00550000074957 EMBL:CH473969
RefSeq:NP_001128061.1 UniGene:Rn.8881 SMR:G3V6A6
Ensembl:ENSRNOT00000003188 GeneID:363487 KEGG:rno:363487 CTD:363487
NextBio:683469 Uniprot:G3V6A6
Length = 199
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/95 (28%), Positives = 53/95 (55%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A ++L+R + +++EK A IKK ++G E +I A++ +R + A
Sbjct: 4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIGQLET 109
F+ M A + AV+ ++QT + + SM G +++
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKS 98
>TAIR|locus:2172686 [details] [associations]
symbol:VPS24.1 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=ISS] [GO:0000815 "ESCRT III complex" evidence=ISS]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
InterPro:IPR005024 Pfam:PF03357 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0015031 GO:GO:0000815
eggNOG:COG5491 HOGENOM:HOG000177219 KO:K12193 EMBL:AB005243
EMBL:AY054614 EMBL:AY128742 EMBL:AF083749 EMBL:AK220831
IPI:IPI00546218 RefSeq:NP_197686.1 UniGene:At.8736
ProteinModelPortal:Q9FFB3 SMR:Q9FFB3 IntAct:Q9FFB3 STRING:Q9FFB3
PaxDb:Q9FFB3 PRIDE:Q9FFB3 EnsemblPlants:AT5G22950.1 GeneID:832359
KEGG:ath:AT5G22950 TAIR:At5g22950 InParanoid:Q9FFB3 OMA:MKIVNNL
PhylomeDB:Q9FFB3 ProtClustDB:CLSN2686097 Genevestigator:Q9FFB3
Uniprot:Q9FFB3
Length = 229
Score = 122 (48.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 24/83 (28%), Positives = 51/83 (61%)
Query: 8 KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLV 67
K P+++LR QR L + R+++R+ + ++++E+ + IK+ AK M S K +AK++V
Sbjct: 11 KPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIV 70
Query: 68 RTRKYAKKFMMMKANIQAVSLKI 90
+R+ + KA + ++S+ +
Sbjct: 71 SSRRTVNRLYENKAQMNSISMHL 93
>ZFIN|ZDB-GENE-040426-2600 [details] [associations]
symbol:chmp3 "charged multivesicular body protein
3" species:7955 "Danio rerio" [GO:0015031 "protein transport"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005768 "endosome"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031902 "late endosome membrane" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 ZFIN:ZDB-GENE-040426-2600
GO:GO:0005829 GO:GO:0031902 GO:GO:0015031 eggNOG:COG5491 CTD:51652
GeneTree:ENSGT00550000074896 HOGENOM:HOG000177219
HOVERGEN:HBG107031 KO:K12193 OMA:MSKEMMK OrthoDB:EOG4VT5ZB
EMBL:BC066696 IPI:IPI00491816 RefSeq:NP_998485.1 UniGene:Dr.48763
ProteinModelPortal:Q6NY88 SMR:Q6NY88 STRING:Q6NY88 PRIDE:Q6NY88
Ensembl:ENSDART00000055487 GeneID:406621 KEGG:dre:406621
InParanoid:Q6NY88 NextBio:20818164 Bgee:Q6NY88 Uniprot:Q6NY88
Length = 221
Score = 121 (47.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/105 (29%), Positives = 62/105 (59%)
Query: 4 LFGR--KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFG+ + P++++ + + K MR +DR+ + ++++E+K+ IK AK+GQ + I
Sbjct: 3 LFGKTQEKPPKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCII 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAV--SLKIQ--TLRSQNAMADS 102
+AK+++++++ K KA + +V S+K Q LR A+ S
Sbjct: 63 LAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKS 107
>UNIPROTKB|F1SVC7 [details] [associations]
symbol:CHMP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015031 "protein transport" evidence=IEA]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
GeneTree:ENSGT00550000074896 EMBL:CU467088
Ensembl:ENSSSCT00000009004 Uniprot:F1SVC7
Length = 217
Score = 119 (46.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 25/98 (25%), Positives = 57/98 (58%)
Query: 6 GRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD 65
G+ +P + + + K MR +DR+ + ++++E+K+ +K AK+GQ + ++AK+
Sbjct: 3 GKGSSPMTQVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKE 62
Query: 66 LVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
++R+RK K KA++ +V + ++ + +A S+
Sbjct: 63 MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 100
>FB|FBgn0036805 [details] [associations]
symbol:Chmp1 "Chmp1" species:7227 "Drosophila melanogaster"
[GO:0015031 "protein transport" evidence=IEA] InterPro:IPR005024
Pfam:PF03357 EMBL:AE014296 GO:GO:0015031 eggNOG:COG5491 KO:K12197
GeneTree:ENSGT00550000074957 OMA:AKMATIT EMBL:AY060798
RefSeq:NP_649051.3 UniGene:Dm.3851 STRING:Q95SH2
EnsemblMetazoa:FBtr0075092 GeneID:40036 KEGG:dme:Dmel_CG4108
UCSC:CG4108-RA CTD:40036 FlyBase:FBgn0036805 InParanoid:Q95SH2
OrthoDB:EOG4GTHW3 GenomeRNAi:40036 NextBio:816669 Uniprot:Q95SH2
Length = 203
Score = 117 (46.2 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 25/91 (27%), Positives = 51/91 (56%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK 74
+ K+ L A+++L+R + E++EK A KK ++G M+ +I A++ +R + A
Sbjct: 6 MEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAV 65
Query: 75 KFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
++ M A + AV+ ++Q+ + + SM G
Sbjct: 66 NYLRMSARVDAVASRVQSALTTRKVTGSMAG 96
>FB|FBgn0037231 [details] [associations]
symbol:vps24 "Charged multivesicular body protein 3"
species:7227 "Drosophila melanogaster" [GO:0015031 "protein
transport" evidence=IEA] [GO:0006911 "phagocytosis, engulfment"
evidence=IMP] InterPro:IPR005024 Pfam:PF03357 EMBL:AE014297
GO:GO:0006911 GO:GO:0015031 eggNOG:COG5491
GeneTree:ENSGT00550000074896 KO:K12193 OMA:MSKEMMK EMBL:AY058381
RefSeq:NP_649451.1 UniGene:Dm.20141 SMR:Q9VN02 IntAct:Q9VN02
MINT:MINT-896357 STRING:Q9VN02 EnsemblMetazoa:FBtr0078958
GeneID:40542 KEGG:dme:Dmel_CG9779 UCSC:CG9779-RA CTD:40542
FlyBase:FBgn0037231 InParanoid:Q9VN02 OrthoDB:EOG4Z614S
GenomeRNAi:40542 NextBio:819274 Uniprot:Q9VN02
Length = 223
Score = 115 (45.5 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 25/102 (24%), Positives = 59/102 (57%)
Query: 4 LFGRKIT--PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKI 61
LFGR + P+E +++ + K LDR+ + ++++E+K+ +K+ A++ ++ I
Sbjct: 3 LFGRTPSKDPKEQVQEWTHKIRKEGNQLDRQIRSIQREEEKVKRSLKQAAQKNDRDTCVI 62
Query: 62 MAKDLVRTRKYAKKFMMMKANIQAVSLKIQTLRSQNAMADSM 103
+AK++V RK + KA++ ++ ++++ S +A S+
Sbjct: 63 LAKEIVNARKAINRIYTSKAHLNSIQMQMKNQLSTLRVAGSL 104
>WB|WBGene00017735 [details] [associations]
symbol:F23C8.6 species:6239 "Caenorhabditis elegans"
[GO:0015031 "protein transport" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR005024 Pfam:PF03357 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0015031 GO:GO:0040011
eggNOG:COG5491 HOGENOM:HOG000241980 KO:K12197
GeneTree:ENSGT00550000074957 EMBL:FO081207 OMA:AKMATIT PIR:T33826
RefSeq:NP_490974.1 ProteinModelPortal:Q9TXI3 STRING:Q9TXI3
PaxDb:Q9TXI3 EnsemblMetazoa:F23C8.6 GeneID:171801
KEGG:cel:CELE_F23C8.6 UCSC:F23C8.6 CTD:171801 WormBase:F23C8.6
InParanoid:Q9TXI3 NextBio:872753 Uniprot:Q9TXI3
Length = 205
Score = 107 (42.7 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 31/95 (32%), Positives = 49/95 (51%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEK----KLIADIKKMAKEGQMESVKIMAKDLVRTR 70
L K+ L A + L++ Q E+ EK KL A IKK G E ++ A++ +R +
Sbjct: 10 LEKHLFDLKFAAKQLEKNAQRCEKDEKVEKDKLTAAIKK----GNKEVAQVHAENAIRKK 65
Query: 71 KYAKKFMMMKANIQAVSLKIQTLRSQNAMADSMIG 105
A ++ M A I AV+ ++QT +Q + SM G
Sbjct: 66 NEAVNYIKMAARIDAVAARVQTAATQKRVTASMSG 100
>SGD|S000001524 [details] [associations]
symbol:VPS24 "Subunit of the ESCRT-III complex" species:4932
"Saccharomyces cerevisiae" [GO:0043162 "ubiquitin-dependent protein
catabolic process via the multivesicular body sorting pathway"
evidence=IC] [GO:0045324 "late endosome to vacuole transport"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000815
"ESCRT III complex" evidence=IDA] [GO:0005768 "endosome"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0070676 "intralumenal vesicle formation" evidence=IMP]
[GO:0010008 "endosome membrane" evidence=IEA] [GO:0012505
"endomembrane system" evidence=IEA] InterPro:IPR005024 Pfam:PF03357
SGD:S000001524 GO:GO:0015031 GO:GO:0012505 EMBL:BK006944
GO:GO:0045324 GO:GO:0000815 EMBL:X71621 eggNOG:COG5491
GeneTree:ENSGT00550000074896 HOGENOM:HOG000177219 KO:K12193
GO:GO:0043162 GO:GO:0070676 OrthoDB:EOG4F7RVD EMBL:Z28041
EMBL:AY557901 PIR:S37862 RefSeq:NP_012883.1
ProteinModelPortal:P36095 SMR:P36095 DIP:DIP-7295N IntAct:P36095
MINT:MINT-468346 STRING:P36095 PaxDb:P36095 EnsemblFungi:YKL041W
GeneID:853825 KEGG:sce:YKL041W CYGD:YKL041w OMA:NIDRQIR
NextBio:975014 Genevestigator:P36095 GermOnline:YKL041W
Uniprot:P36095
Length = 224
Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/96 (28%), Positives = 51/96 (53%)
Query: 11 PEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTR 70
P+E R+ + L K R++++ + + + K IKK AK+ + +V++ AK+L +
Sbjct: 13 PKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQIN 72
Query: 71 KYAKKFMMMKANIQAVSLKI-QTLRSQ---NAMADS 102
K + +A + +V +KI + +R N MADS
Sbjct: 73 KQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADS 108
>DICTYBASE|DDB_G0267394 [details] [associations]
symbol:vps46 "SNF7 family protein" species:44689
"Dictyostelium discoideum" [GO:0015031 "protein transport"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0045324 "late endosome to vacuole transport" evidence=ISS]
[GO:0006623 "protein targeting to vacuole" evidence=ISS]
[GO:0005770 "late endosome" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005768 "endosome" evidence=IEA]
[GO:0010008 "endosome membrane" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005024 Pfam:PF03357
dictyBase:DDB_G0267394 GenomeReviews:CM000150_GR EMBL:AAFI02000003
GO:GO:0010008 GO:GO:0005770 GO:GO:0006623 GO:GO:0045324
eggNOG:COG5491 KO:K12197 OMA:EHLFNLK EMBL:AF081802
RefSeq:XP_647634.1 ProteinModelPortal:O96552 STRING:O96552
PRIDE:O96552 EnsemblProtists:DDB0191317 GeneID:8616449
KEGG:ddi:DDB_G0267394 Uniprot:O96552
Length = 192
Score = 100 (40.3 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 18/77 (23%), Positives = 43/77 (55%)
Query: 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86
+ L+++ + EQ EK +KK ++G M+ +I A++ +R + + ++ + + I AV
Sbjct: 13 KQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAV 72
Query: 87 SLKIQTLRSQNAMADSM 103
+ +++T ++ SM
Sbjct: 73 ASRVETAIRMKSVTGSM 89
>TAIR|locus:2032607 [details] [associations]
symbol:VPS46.2 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=ISS;RCA] [GO:0000578 "embryonic axis specification"
evidence=IGI] [GO:0009793 "embryo development ending in seed
dormancy" evidence=IGI] [GO:0032509 "endosome transport via
multivesicular body sorting pathway" evidence=IGI] [GO:0040007
"growth" evidence=IGI] [GO:0006623 "protein targeting to vacuole"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0010286 "heat acclimation" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR005024 Pfam:PF03357
EMBL:CP002684 GO:GO:0040007 GO:GO:0015031 GO:GO:0009793
EMBL:AC008017 GO:GO:0000578 KO:K12197 OMA:EHLFNLK GO:GO:0032509
ProtClustDB:CLSN2682103 UniGene:At.22952 UniGene:At.71264
EMBL:AY059851 EMBL:AY081673 IPI:IPI00527973 PIR:G96755
RefSeq:NP_565053.1 ProteinModelPortal:Q9SSM4 IntAct:Q9SSM4
STRING:Q9SSM4 PRIDE:Q9SSM4 EnsemblPlants:AT1G73030.1 GeneID:843634
KEGG:ath:AT1G73030 TAIR:At1g73030 InParanoid:Q9SSM4
PhylomeDB:Q9SSM4 ArrayExpress:Q9SSM4 Genevestigator:Q9SSM4
Uniprot:Q9SSM4
Length = 203
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 21/88 (23%), Positives = 45/88 (51%)
Query: 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86
+ L R+ + E++EK +KK ++G M+ +I A++ +R R ++ + + + AV
Sbjct: 19 KSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLASRLDAV 78
Query: 87 SLKIQTLRSQNAMADSM---IGQLETTL 111
++ T + SM + LE++L
Sbjct: 79 VARLDTQAKMTTITKSMTNIVKSLESSL 106
>TAIR|locus:2007883 [details] [associations]
symbol:VPS46.1 "vacuolar protein sorting 46.1"
species:3702 "Arabidopsis thaliana" [GO:0015031 "protein transport"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=ISS] [GO:0000578 "embryonic axis specification"
evidence=IGI] [GO:0009790 "embryo development" evidence=IGI]
[GO:0032509 "endosome transport via multivesicular body sorting
pathway" evidence=IGI] [GO:0040007 "growth" evidence=IGI]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR005024
Pfam:PF03357 EMBL:CP002684 GO:GO:0040007 GO:GO:0015031
GO:GO:0000578 eggNOG:COG5491 KO:K12197 GO:GO:0032509 OMA:AKMATIT
EMBL:AY085606 EMBL:AK118350 IPI:IPI00533081 RefSeq:NP_173215.1
UniGene:At.41817 IntAct:Q8LE58 STRING:Q8LE58
EnsemblPlants:AT1G17730.1 GeneID:838349 KEGG:ath:AT1G17730
TAIR:At1g17730 InParanoid:Q8LE58 ProtClustDB:CLSN2682103
Genevestigator:Q8LE58 Uniprot:Q8LE58
Length = 203
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 20/88 (22%), Positives = 45/88 (51%)
Query: 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86
+ L R+ + E++E+ +KK ++G M+ +I A++ +R R ++ + + + AV
Sbjct: 19 KSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAV 78
Query: 87 SLKIQTLRSQNAMADSM---IGQLETTL 111
++ T + SM + LE++L
Sbjct: 79 VARLDTQAKMATITKSMTNIVKSLESSL 106
>ZFIN|ZDB-GENE-040426-1474 [details] [associations]
symbol:chmp1a "chromatin modifying protein 1A"
species:7955 "Danio rerio" [GO:0015031 "protein transport"
evidence=IEA] [GO:0021549 "cerebellum development" evidence=IMP]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0010008 "endosome membrane"
evidence=IEA] InterPro:IPR005024 Pfam:PF03357
ZFIN:ZDB-GENE-040426-1474 GO:GO:0015031 GO:GO:0010008 GO:GO:0021549
eggNOG:COG5491 HOGENOM:HOG000241980 HOVERGEN:HBG080200 KO:K12197
GeneTree:ENSGT00550000074957 EMBL:AY398372 EMBL:BC056577
EMBL:BC067665 IPI:IPI00505457 RefSeq:NP_956857.1 UniGene:Dr.10291
ProteinModelPortal:Q6PHF0 STRING:Q6PHF0 PRIDE:Q6PHF0
Ensembl:ENSDART00000122477 GeneID:393535 KEGG:dre:393535 CTD:5119
NextBio:20814556 ArrayExpress:Q6PHF0 Bgee:Q6PHF0 Uniprot:Q6PHF0
Length = 198
Score = 90 (36.7 bits), Expect = 0.00049, P = 0.00049
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 27 RDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAV 86
+ L+R + E+ K A +KK ++ +E ++ A++ +R + ++ M + + AV
Sbjct: 13 KQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAV 72
Query: 87 SLKIQTLRSQNAMADSM 103
+ K+QT + +A +M
Sbjct: 73 ASKVQTALTMKGVAKNM 89
>POMBASE|SPBC13G1.12 [details] [associations]
symbol:did2 "ESCRT III complex subunit Did2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000815 "ESCRT III
complex" evidence=ISM] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005770 "late endosome" evidence=ISO] [GO:0006623
"protein targeting to vacuole" evidence=IC] [GO:0006900 "membrane
budding" evidence=IC] [GO:0012505 "endomembrane system"
evidence=IEA] [GO:0032511 "late endosome to vacuole transport via
multivesicular body sorting pathway" evidence=ISO] [GO:0043162
"ubiquitin-dependent protein catabolic process via the
multivesicular body sorting pathway" evidence=IC]
InterPro:IPR005024 Pfam:PF03357 PomBase:SPBC13G1.12 EMBL:CU329671
GO:GO:0012505 GenomeReviews:CU329671_GR GO:GO:0005770 GO:GO:0006623
GO:GO:0000815 eggNOG:COG5491 HOGENOM:HOG000241980 GO:GO:0032511
PIR:T39413 RefSeq:NP_596562.2 STRING:O60074 GeneID:2539670
OrthoDB:EOG42Z80Q NextBio:20800824 GO:GO:0006900 GO:GO:0043162
Uniprot:O60074
Length = 200
Score = 90 (36.7 bits), Expect = 0.00050, P = 0.00050
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 22 LNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81
L A + L+++ ++E+ +KK +G E +I A + +R ++ + + + +
Sbjct: 11 LKFAAKSLNKQSLKAAKEERAEREKVKKAITKGNSEIARIYASNAIRKQQESLNLLKLSS 70
Query: 82 NIQAVSLKIQTLRSQNAMADSMIG 105
I AVS ++QT + A++ +M G
Sbjct: 71 RIDAVSSRLQTAVTMRAVSGNMAG 94
>UNIPROTKB|G4MKS3 [details] [associations]
symbol:MGG_06670 "Charged multivesicular body protein 3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR005024 Pfam:PF03357 GO:GO:0015031
EMBL:CM001231 KO:K12193 RefSeq:XP_003709375.1
ProteinModelPortal:G4MKS3 EnsemblFungi:MGG_06670T0 GeneID:2684843
KEGG:mgr:MGG_06670 Uniprot:G4MKS3
Length = 234
Score = 90 (36.7 bits), Expect = 0.00072, P = 0.00072
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 8 KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKK----LIADIKKMAK------EGQME 57
K P+ +RK + + +R LDR+ ++Q E K ++A K+ A+ + Q E
Sbjct: 10 KPDPQAQMRKCNAMIRQNIRKLDRDIAQVKQVETKTKNLIVAADKRAARNPAQAAQAQKE 69
Query: 58 SVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKI 90
V+ A++LVR RK + + + KA + +V +++
Sbjct: 70 -VRAFARELVRARKTSARLVTSKAQLSSVQMQV 101
>WB|WBGene00011342 [details] [associations]
symbol:T01G5.7 species:6239 "Caenorhabditis elegans"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
eggNOG:KOG4185 EMBL:Z81111 RefSeq:NP_506726.2
ProteinModelPortal:O18012 SMR:O18012 EnsemblMetazoa:T01G5.7
GeneID:187960 KEGG:cel:CELE_T01G5.7 UCSC:T01G5.7 CTD:187960
WormBase:T01G5.7 GeneTree:ENSGT00390000016955 HOGENOM:HOG000114046
InParanoid:O18012 OMA:HEANIPF NextBio:937094 Uniprot:O18012
Length = 260
Score = 90 (36.7 bits), Expect = 0.00089, P = 0.00089
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQH---MEQQEKKLIADIKKMAKEGQMESVKIMAKDLVR 68
E++L NQ+ L A +LD + + +E Q+ KL+A++ KM E +++IM KD +
Sbjct: 59 EKVLETNQK-LQLAFAELDEQSEKINSLETQQHKLVAELSKMEIERSNSAIEIMKKDK-Q 116
Query: 69 TRKYAKKFMMMKANI 83
R ++ +MM AN+
Sbjct: 117 LRTTEEQLIMM-ANL 130
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.128 0.337 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 114 114 0.00091 102 3 10 22 0.42 30
29 0.44 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 563 (60 KB)
Total size of DFA: 137 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.96u 0.10s 26.06t Elapsed: 00:00:01
Total cpu time: 25.96u 0.10s 26.06t Elapsed: 00:00:01
Start: Thu Aug 15 13:06:35 2013 End: Thu Aug 15 13:06:36 2013