RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1858
(114 letters)
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 68.4 bits (168), Expect = 7e-16
Identities = 26/87 (29%), Positives = 53/87 (60%)
Query: 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKF 76
+ +L KA+R+LD++++ +E++ KKL A+IKK+AK+G ++ I+ K R K +
Sbjct: 1 EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQL 60
Query: 77 MMMKANIQAVSLKIQTLRSQNAMADSM 103
AN++ V + I+ ++ + ++M
Sbjct: 61 DGQLANLEQVRMAIENAKTNQEVLNAM 87
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 32.9 bits (75), Expect = 0.026
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDL 66
+K TP+ + K+ AL K + LD+E E+ +KL + G + V A
Sbjct: 1146 KKTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRA-AARGESGAAKKVSRQAPKK 1204
Query: 67 VRTRKYAKK 75
+K KK
Sbjct: 1205 PAPKKTTKK 1213
>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38
N-terminal domain. Glycosyl hydrolases are key enzymes
of carbohydrate metabolism.
Length = 269
Score = 29.9 bits (68), Expect = 0.21
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 16/69 (23%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREK------------QHMEQQEKKLIADIK 48
+ WL+ T +E RK QR + ++ LDR + + + +L IK
Sbjct: 12 VGWLW----TVDETRRKVQRTFSNVLKLLDRYPEFRFIQSEAQFYEWWWEDQPELFKKIK 67
Query: 49 KMAKEGQME 57
K+ EG++E
Sbjct: 68 KLVAEGRLE 76
>gnl|CDD|114701 pfam05993, Reovirus_M2, Reovirus major virion structural protein
Mu-1/Mu-1C (M2). This family consists of several
Reovirus major virion structural protein Mu-1/Mu-1C (M2)
sequences. This family is family is thought to play a
role in host cell membrane penetration.
Length = 648
Score = 29.7 bits (66), Expect = 0.34
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 6 GRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD 65
G P R++ A++ L + + ++ L DI M+S+ A D
Sbjct: 121 GPVFIPTRQTMNLDRSIAAALKALAKWEIDLDTAMTLLPPDIPAGEASCNMKSLLAFADD 180
Query: 66 LVR----TRKYAKKF 76
++ +Y K+
Sbjct: 181 ILPDDNLCLRYPKEA 195
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 28.0 bits (63), Expect = 1.0
Identities = 14/84 (16%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 18 NQRALNKAMRDLDREKQHMEQQEKKLIADIKKM--AKEGQMESVKI-MAKDLVRTRKYAK 74
+ L + +++L+ E + +E++ +K+ +KK+ GQ+ K + L+ T++
Sbjct: 328 DFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLS 387
Query: 75 KFM-MMKANIQAVSLKIQTLRSQN 97
+ + ++ ++ + ++++L S+
Sbjct: 388 EELEELEEELKELKEELESLYSEG 411
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIAD-----IKKMAKEGQMESVK 60
R + E L K L+ + +L EK+ +E +E + + + + E ++S++
Sbjct: 81 RLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLE 139
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 17 KNQRALNKAMRDLD-REKQHMEQQEKKLIADIKKMAKEGQ 55
KN + + ++DLD ++ + +E L A +KK G
Sbjct: 309 KNSIGMLEGLKDLDLLARK--QAREAALRAWVKKDPARGA 346
>gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain. This family of
archaeal proteins are part of the NAD(P)H-dependent
flavin oxidoreductase (oxidored) FMN-binding family that
reduce a range of alternative electron acceptors. Most
use FAD/FMN as a cofactor and NAD(P)H as electron donor.
Some contain 4Fe-4S cluster to transfer electron from
FAD to FMN. The specific function of this group is
unknown.
Length = 233
Score = 27.7 bits (62), Expect = 1.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 34 QHMEQQEKKLIADIKKMAKEGQMESVKIMA----KDLVRTRKYAK 74
+ + + ++L IK + + G SVKI A D R K
Sbjct: 119 EALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIEK 163
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 27.4 bits (62), Expect = 1.7
Identities = 10/45 (22%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIA---DIKKMAKE 53
E+ L + + L++ + L++ ++ +E++EK+L +++K +E
Sbjct: 88 EKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell
motility and secretion].
Length = 204
Score = 27.1 bits (60), Expect = 1.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 37 EQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAK--KFMMMKANIQAVSLKIQTLR 94
E+Q KKL+ ++K+ AK+GQ+ +I K R R + K ++ + A ++Q+L
Sbjct: 6 ERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLD 65
Query: 95 SQNAMADSM 103
+ M
Sbjct: 66 TMLFEKVVM 74
>gnl|CDD|234892 PRK01037, trmD, tRNA (guanine-N(1)-)-methyltransferase/unknown
domain fusion protein; Reviewed.
Length = 357
Score = 27.1 bits (60), Expect = 1.9
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 30 DREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRK-YAKKF 76
R + QE K + SV + +DL R +K Y+K F
Sbjct: 226 GRSADCLFTQE----DLPKIEVFSPKTFSVVLEVQDLRRAKKFYSKMF 269
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 27.1 bits (61), Expect = 2.1
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG 54
E I+ EE+ ++A+ KA+ + + K+ + ++ ++ +A +++ K+G
Sbjct: 133 YELGKKLGISKEEI----KKAVEKALEEQEAFKKDLRKKGEEALAYLEEEGKKG 182
>gnl|CDD|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal
protein S1 (RPS1) domain. RPS1 is a component of the
small ribosomal subunit thought to be involved in the
recognition and binding of mRNA's during translation
initiation. The bacterial RPS1 domain architecture
consists of 4-6 tandem S1 domains. In some bacteria,
the tandem S1 array is located C-terminal to a
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
(HMBPP reductase) domain. While RPS1 is found primarily
in bacteria, proteins with tandem RPS1-like domains
have been identified in plants and humans, however
these lack the N-terminal HMBPP reductase domain. This
CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1
homolog. Autoantibodies to double-stranded DNA from
patients with systemic lupus erythematosus cross-react
with the human RPS1 homolog.
Length = 69
Score = 25.7 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 35 HMEQQEKKLIADIKKMAKEGQMESVKIMAKD 65
H+ Q K + D+K + KEG VK+++ D
Sbjct: 29 HISQIAHKRVKDVKDVLKEGDKVKVKVLSID 59
>gnl|CDD|224460 COG1543, COG1543, Uncharacterized conserved protein [Function
unknown].
Length = 504
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 22 LNKAMRD---LDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKF 76
L + + D DR +++E + + + K+ A + E + + + R Y +++
Sbjct: 64 LMEMLADPYLQDRYLRYLEWKIELSEKEEKRYADQSLRELAEFYIPEFLNARGYWEQY 121
>gnl|CDD|181746 PRK09273, PRK09273, hypothetical protein; Provisional.
Length = 211
Score = 26.5 bits (59), Expect = 3.1
Identities = 8/46 (17%), Positives = 26/46 (56%)
Query: 31 REKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKF 76
+E+ +Q+ ++ ++K + ++ +K + +DL++T ++F
Sbjct: 144 KERAEPQQRNAGILNEVKAATYKDLLDILKAIDQDLLKTAISGERF 189
>gnl|CDD|185607 PTZ00422, PTZ00422, glideosome-associated protein 50; Provisional.
Length = 394
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 10 TPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMES-VKI 61
T E + Q + +R Q + + + + K AK ++ VKI
Sbjct: 318 TGEVLYTHKQPLKKRKLRFQGNALQELPALPEVELYPVPKGAKMLSRDAFVKI 370
>gnl|CDD|217535 pfam03401, TctC, Tripartite tricarboxylate transporter family
receptor. These probable extra-cytoplasmic solute
receptors are strongly overrepresented in several
beta-proteobacteria. This family, formerly known as Bug
- Bordetella uptake gene (bug) product - is a family of
bacterial tripartite tricarboxylate receptors of the
extracytoplasmic solute binding receptor-dependent
transporter group of families, distinct from the ABC and
TRAP-T families. The TctABC system has been
characterized in S. typhimurium, and TctC is the
extracytoplasmic tricarboxylate-binding receptor which
binds the transporters TctA and TctB, two integral
membrane proteins. Complete three-component systems are
found only in bacteria.
Length = 274
Score = 26.6 bits (59), Expect = 3.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 4 LFGRKITPEEMLRKNQRALNKAMRD 28
L K TP ++ K A+ KA++D
Sbjct: 208 LVAPKGTPPAVVEKLNDAIKKALKD 232
>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain,
uncharacterized subfamily 8. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members
have been shown to bind up to 4 ions via binding sites
with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra-
and extracellular, some function at extreme
temperatures and pH values.
Length = 222
Score = 26.5 bits (59), Expect = 3.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 47 IKKMAKEGQMESVKIMAKDLVRTRK 71
IKK A E ++ S+KI+ +D
Sbjct: 54 IKKYAPEAEIGSIKILGEDGRCNSF 78
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 26.0 bits (57), Expect = 4.3
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 24 KAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANI 83
K R +E++ +EK L + K+ A+E + E++KI+ +++ + + K+ +++ANI
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANI 103
Query: 84 QAV 86
V
Sbjct: 104 DDV 106
>gnl|CDD|236949 PRK11655, ubiC, chorismate pyruvate lyase; Provisional.
Length = 169
Score = 25.7 bits (57), Expect = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 3 WLFGRKITPEEMLRKNQRAL 22
WL GR + PE L + AL
Sbjct: 88 WLAGRTVVPESTLSGPELAL 107
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 25.9 bits (57), Expect = 4.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 12 EEMLRKNQR----ALNKAMRDL-DREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKD 65
EE+ R +N + L REK+ E++E++ A IK ++ + E + A D
Sbjct: 155 EELKELQSRRADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADD 213
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 25.6 bits (57), Expect = 5.2
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 16 RKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQ 55
+ Q L + + L++E Q +E Q +K I +I+K + +
Sbjct: 19 EELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQI 58
>gnl|CDD|236536 PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.
Length = 319
Score = 25.8 bits (58), Expect = 5.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 10 TPEEMLRKNQRALNKAMRD-----LDREKQHMEQQEKKLIADIKKM 50
E LR +AL K + D LDR + H ++LIA+I++
Sbjct: 140 PVAENLRAVAKALGKDVSDLTVVVLDRPR-H-----EELIAEIREA 179
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 25.6 bits (56), Expect = 6.7
Identities = 6/39 (15%), Positives = 22/39 (56%)
Query: 15 LRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKE 53
++K + + + L++++ +++ +KL D +A++
Sbjct: 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119
>gnl|CDD|212105 cd10793, GH57N_TLGT_like, N-terminal catalytic domain of
4-alpha-glucanotransferase; glycoside hydrolase family
57 (GH57). 4-alpha-glucanotransferase (TLGT, EC
2.4.1.25) plays a key role in the maltose metabolism.
It catalyzes the disproportionation of amylose and the
formation of large cyclic alpha-1,4-glucan
(cycloamylose) from linear amylose. TLGT functions as a
homodimer. Each monomer is composed of two domains, an
N-terminal catalytic domain with a (beta/alpha)7 barrel
fold and a C-terminal domain with a twisted
beta-sandwich fold. Some family members have been
designated as alpha-amylases, such as the heat-stable
eubacterial amylase from Dictyoglomus thermophilum
(DtAmyA) and the extremely thermostable archaeal
amylase from Pyrococcus furiosus(PfAmyA). However, both
of these proteins are 4-alpha-glucanotransferases.
DtAmyA was shown to have transglycosylating activity
and PfAmyA exhibits 4-alpha-glucanotransferase
activity.
Length = 279
Score = 25.6 bits (57), Expect = 7.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 36 MEQQEKKLIADIKKMAKEGQME 57
+E+ + + ++K+ GQ+E
Sbjct: 54 LEENHPEYLDLLRKLVDRGQIE 75
>gnl|CDD|217491 pfam03320, FBPase_glpX, Bacterial fructose-1,6-bisphosphatase,
glpX-encoded.
Length = 308
Score = 25.5 bits (57), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 10 TPEEMLRKNQRALNKAMRD-----LDREKQHMEQQEKKLIADIKKM 50
EE L+ +AL K + D LDR + H +LI +I++
Sbjct: 136 PVEENLKAVAKALGKDVEDLTVVVLDRPR-H-----AELIEEIREA 175
>gnl|CDD|130789 TIGR01728, SsuA_fam, ABC transporter, substrate-binding protein,
aliphatic sulfonates family. Members of this family are
substrate-binding periplasmic proteins of ABC
transporters. This subfamily includes SsuA, a member of
a transporter operon needed to obtain sulfur from
aliphatic sulfonates. Related proteins outside the scope
of This model include taurine (NH2-CH2-CH2-S03H) binding
proteins, the probable sulfate ester binding protein
AtsR, and the probable aromatic sulfonate binding
protein AsfC. All these families make sulfur available
when Cys and sulfate levels are low. Please note that
phylogenetic analysis by neighbor-joining suggests that
a number of sequences belonging to this family have been
excluded because of scoring lower than taurine-binding
proteins [Transport and binding proteins, Other].
Length = 288
Score = 25.4 bits (56), Expect = 8.2
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 33 KQHMEQQEK--KLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKI 90
+ H EQ ++ K++ +K A+E ES KI+AK+L ++ ++ ++ + ++ +
Sbjct: 194 EAHPEQVQRVLKVLVKARKWAEENPEESAKILAKELGLSQAVVEETVLNRRFLRVEVISD 253
Query: 91 QTLRSQNAMADSM 103
+ + AMAD
Sbjct: 254 AVVDALQAMADFF 266
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 25.3 bits (55), Expect = 8.2
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRK 71
E +KN R ++ + D K + +QE K D KEG + V + +L
Sbjct: 15 SEDEQKNGRVKVRSRKTDDMNKGYSWEQEYKRSWDDVNDDKEGSLVGV-VAEFNLETKAP 73
Query: 72 YAKK 75
Y+
Sbjct: 74 YSNN 77
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 25.3 bits (56), Expect = 8.4
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 1 MEWLFGRKITP------EEMLRKNQRALNKAMRDLDREKQHMEQQE-------KKLIAD- 46
MEWL ++ P E+ + L KA++ L + E E KL+
Sbjct: 327 MEWLKKLEVVPTIRALREQAEDVREEELEKALKKLPNGEDEEEVLEKLARSLVNKLLHAP 386
Query: 47 ---IKKMAKEGQMESVKIMAK 64
+K+ AKEG E ++ + +
Sbjct: 387 TVRLKEAAKEGSEELLRALRE 407
>gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional.
Length = 175
Score = 25.2 bits (55), Expect = 8.7
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 12 EEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMESVKIMA 63
E +LRKN+ L KA + D+ + ++ +KL A+I + A E+ K++A
Sbjct: 69 EAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKA---HTEAKKMIA 117
>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 601
Score = 25.2 bits (55), Expect = 9.9
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 38 QQEKKLIADIKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKANIQAVSLKIQ 91
++EK+L +I+K+++EG I++ + TR + + F I+ L+++
Sbjct: 524 EREKELWREIRKLSEEGAF----ILSSSQLLTRTHVETFREYGLKIKLKLLEVR 573
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.128 0.337
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,565,868
Number of extensions: 468420
Number of successful extensions: 1134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 209
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)