RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1858
         (114 letters)



>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
          domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 24.6 bits (53), Expect = 3.0
 Identities = 5/22 (22%), Positives = 13/22 (59%)

Query: 36 MEQQEKKLIADIKKMAKEGQME 57
          +E+ +   +  ++ + K GQ+E
Sbjct: 58 IEENKPDYLDLLRSLIKRGQLE 79


>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 150

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 35  HMEQQEKKLIAD-IKKMAKEGQMESVKIMAKDLVRTRKYAKKFMMMKA 81
            +  Q+  +++  IKK+  +          KDL     Y K    ++ 
Sbjct: 70  FVRDQDSAVVSSNIKKIVAD------LKKGKDLSPAINYTKLKNAVQN 111


>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus
           subtilis [TaxId: 1423]}
          Length = 210

 Score = 23.2 bits (50), Expect = 8.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 2   EWLFGRKITPEEMLRKNQRALNKAMRD 28
           E L G ++  EE+L  N +   + + D
Sbjct: 167 ELLCGIQLQKEEVLNMNNQEFLQRIDD 193


>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 23.4 bits (50), Expect = 8.5
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 18/72 (25%)

Query: 2   EWLFGRKITPEEMLRKN-QRALNKAMRDLDREKQH-------------MEQQEKKLIADI 47
            W+     T EE  + + +  L+ A+R L    +                   +     +
Sbjct: 64  GWIQ----TFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQM 119

Query: 48  KKMAKEGQMESV 59
           K + K GQ+E V
Sbjct: 120 KSIVKNGQLEFV 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.128    0.337 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,265
Number of extensions: 15669
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 29
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)