BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1859
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 6 QRRESSLKFQTRCIKCFPNKQ----GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR-- 59
+R ES LK Q RC+ F +KQ G+ L SIEGR A+ Y++ P K + FKCHR
Sbjct: 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSN 263
Query: 60 -IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS-LF 117
+ IY VN I+FH + T AT GSDG + WD + +L + D I++ F
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
Query: 118 HQEYNTFATGGS 129
+ N FA S
Sbjct: 324 NHNGNIFAYASS 335
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8 RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +AF+CHR+
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8 RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +AF+CHR+
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8 RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +AF+CHR+
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8 RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +AF+CHR+
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
E N TG D + ++D NKK L Q +D G+ +L + +G +D V +WD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 111 TGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 161
T + + E N TG D + ++D NKK L Q +D G+ +L +++
Sbjct: 122 TSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
E N TG D + ++D NKK L Q +D G+ +L + +G +D V +WD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 109 YDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 161
+ T + + E N TG D + ++D NKK L Q +D G+ +L +++
Sbjct: 120 HXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 71 VNAISFHQEYNTF--ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNT----- 123
VN +SF+ Y+ F ATG +D V +WD N K + H +++ +F +++
Sbjct: 276 VNCLSFNP-YSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI 332
Query: 124 FATGGSDGYVNIWD 137
A+ G+D +N+WD
Sbjct: 333 LASSGTDRRLNVWD 346
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 71 VNAISFHQEYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDT---GITSLFHQEYNTF-- 124
V +S+H + + F + D + IWD + H D + L Y+ F
Sbjct: 230 VEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFIL 289
Query: 125 ATGGSDGYVNIWDGFNKKRLCQFHRYDT 152
ATG +D V +WD N K + H +++
Sbjct: 290 ATGSADKTVALWDLRNLK--LKLHSFES 315
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATG 127
+NAI F N FATG D ++D + L + + GITS+ F + G
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 299
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
D N+WD R +D ++ L + D
Sbjct: 300 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 334
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATG 127
+NAI F N FATG D ++D + L + + GITS+ F + G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
D N+WD R +D ++ L + D
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATG 127
+NAI F N FATG D ++D + L + + GITS+ F + G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
D N+WD R +D ++ L + D
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATG 127
+NAI F N FATG D ++D + L + + GITS+ F + G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
D N+WD R +D ++ L + D
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL---FHQEYNTFATG 127
++A SF T DG +WD + + L FH + + L + NTF +G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL 157
G D +WD + + + F +++ + S+
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD 137
NTF +GG D +WD + + + F +++ + S+ ++ + FA+G D ++D
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 18 CIKCFPNKQG--YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 75
C+ P++ G +V + +A V + +G +Q AF+ H VN++
Sbjct: 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ----AFETHE---------SDVNSVR 247
Query: 76 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATGGSDGY 132
++ + FA+G D ++D + + + + G +S+ F G +D
Sbjct: 248 YYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT 307
Query: 133 VNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
+N+WD R+ ++ +++L S D
Sbjct: 308 INVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 68 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
I+ +++ F G +D +N+WD R+ ++ +++L + F +
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 127 GGSDGYVNIW 136
G D + +W
Sbjct: 344 GSWDHTLRVW 353
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATG 127
+NAI F N FATG D ++D + L + + GITS+ F + G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
D N+WD R +D ++ L + D
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 54 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI 113
A RIK + A++ + + SDG + +WD N+ + QF + G
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186
Query: 114 TSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 157
+ + + TGG D V WD + R Q H + + I SL
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWD-LREGRQLQQHDFTSQIFSL 230
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 71 VNAISFHQEYNTF--ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNT----- 123
VN +SF+ Y+ F ATG +D V +WD N K + H +++ +F ++
Sbjct: 278 VNCLSFNP-YSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI 334
Query: 124 FATGGSDGYVNIWD 137
A+ G+D +N+WD
Sbjct: 335 LASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 71 VNAISFHQEYNTF--ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNT----- 123
VN +SF+ Y+ F ATG +D V +WD N K + H +++ +F ++
Sbjct: 278 VNCLSFNP-YSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI 334
Query: 124 FATGGSDGYVNIWD 137
A+ G+D +N+WD
Sbjct: 335 LASSGTDRRLNVWD 348
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 34 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN 93
+ R E++ PE KYA HR PV + FH ++ + D +
Sbjct: 87 QKRDPKEWIPRPPE----KYALSGHR---------SPVTRVIFHPVFSVMVSASEDATIK 133
Query: 94 IWD--GFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHR 149
+WD + +R + H D+ F A+ +D + +WD GF R H
Sbjct: 134 VWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD 192
Query: 150 YDTGITSL 157
++ S+
Sbjct: 193 HNVSSVSI 200
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V + FH + D + +WD NK+ + + ++ +TSL FH+ TG
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 130 DGYVNIWD 137
D V +W+
Sbjct: 401 DQTVKVWE 408
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS-LFHQEYNTFATGGSDGYVNIWDGFNK 141
+G D + +WD L +D + LFH + D + +WD NK
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 142 KRLCQFHRYDTGITSLCF 159
+ + + ++ +TSL F
Sbjct: 371 RCMKTLNAHEHFVTSLDF 388
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
+ ++ F + ATG D + IWD N+K + ++ I SL + + +G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 130 DGYVNIWD 137
D V IWD
Sbjct: 186 DRTVRIWD 193
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-------FHQEYNT 123
V +++ Q +G D V WD + L + + S+ EYN
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 124 FATGGSDGYVNIW 136
FATG D IW
Sbjct: 373 FATGSGDCKARIW 385
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 55 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 95
+ HR + + + N S EYN FATG D IW
Sbjct: 348 LQGHR---NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 71 VNAISFHQEYNTF--ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNT----- 123
VN +SF+ Y+ F ATG +D V +WD N K + H +++ +F +++
Sbjct: 280 VNCLSFNP-YSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI 336
Query: 124 FATGGSDGYVNIWD 137
A+ G+D +++WD
Sbjct: 337 LASSGTDRRLHVWD 350
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 21/140 (15%)
Query: 23 PNKQGYVLSSIEGRAAVEY-LDTGPEMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQ 78
PN GY+LS+ + + ++ P+ ++ K F H V +++H
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV---------VEDVAWHL 241
Query: 79 EYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDT---GITSLFHQEYNTF--ATGGSDGY 132
+ + F + D + IWD N H D + L Y+ F ATG +D
Sbjct: 242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301
Query: 133 VNIWDGFNKKRLCQFHRYDT 152
V +WD N K + H +++
Sbjct: 302 VALWDLRNLK--LKLHSFES 319
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 71 VNAISFHQEYNTF--ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNT----- 123
VN +SF+ Y+ F ATG +D V +WD N K + H +++ +F +++
Sbjct: 282 VNCLSFNP-YSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI 338
Query: 124 FATGGSDGYVNIWD 137
A+ G+D +++WD
Sbjct: 339 LASSGTDRRLHVWD 352
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 21/140 (15%)
Query: 23 PNKQGYVLSSIEGRAAVEY-LDTGPEMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQ 78
PN GY+LS+ + + ++ P+ ++ K F H V +++H
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV---------VEDVAWHL 243
Query: 79 EYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTF-----ATGGSDGY 132
+ + F + D + IWD N H D + +N + ATG +D
Sbjct: 244 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 303
Query: 133 VNIWDGFNKKRLCQFHRYDT 152
V +WD N K + H +++
Sbjct: 304 VALWDLRNLK--LKLHSFES 321
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 71 VNAISFHQEYNTF--ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNT----- 123
VN +SF+ Y+ F ATG +D V +WD N K + H +++ +F +++
Sbjct: 284 VNCLSFNP-YSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI 340
Query: 124 FATGGSDGYVNIWD 137
A+ G+D +++WD
Sbjct: 341 LASSGTDRRLHVWD 354
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 21/140 (15%)
Query: 23 PNKQGYVLSSIEGRAAVEY-LDTGPEMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQ 78
PN GY+LS+ + + ++ P+ ++ K F H V +++H
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV---------VEDVAWHL 245
Query: 79 EYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTF-----ATGGSDGY 132
+ + F + D + IWD N H D + +N + ATG +D
Sbjct: 246 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 305
Query: 133 VNIWDGFNKKRLCQFHRYDT 152
V +WD N K + H +++
Sbjct: 306 VALWDLRNLK--LKLHSFES 323
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSD 130
++++++ +E N A G S V +WD +KRL + + SL Y ++G
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRS 208
Query: 131 GYVN 134
G+++
Sbjct: 209 GHIH 212
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 83 FATGGSDGYVNIWD------GFNKKRLCQFHRYDTGITSLFHQEYNTFATGG--SDGYVN 134
A+GG+D VN+W G+ + H+ + + N ATGG SD ++
Sbjct: 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 135 IWD 137
IW+
Sbjct: 305 IWN 307
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSD 130
++++++ +E N A G S V +WD +KRL + + SL Y ++G
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRS 219
Query: 131 GYVN 134
G+++
Sbjct: 220 GHIH 223
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 83 FATGGSDGYVNIWD------GFNKKRLCQFHRYDTGITSLFHQEYNTFATGG--SDGYVN 134
A+GG+D VN+W G+ + H+ + + N ATGG SD ++
Sbjct: 256 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 135 IWD 137
IW+
Sbjct: 316 IWN 318
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 70 PVNA--ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
PV+A ++F + ATG G VNI+ + K+ I S+ + + A+
Sbjct: 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181
Query: 127 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
G DG +NI+D K L + I SL FS D
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSD 130
++++++ +E N A G S V +WD +KRL + + SL Y ++G
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRS 128
Query: 131 GYVN 134
G+++
Sbjct: 129 GHIH 132
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 83 FATGGSDGYVNIWD------GFNKKRLCQFHRYDTGITSLFHQEYNTFATGG--SDGYVN 134
A+GG+D VN+W G+ + H+ + + N ATGG SD ++
Sbjct: 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224
Query: 135 IWD 137
IW+
Sbjct: 225 IWN 227
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 2 GYIMQRRESSLKFQTRCIKCFPNKQGYV--------LSSIEGRAAVEYLDTGPEMQKMKY 53
GY+ R + L +T CI+ + K+G V + I +A LD+ + + K
Sbjct: 15 GYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKA---LLDSSYKYHEAKE 71
Query: 54 AFKCHRIKEDGIEKIYP 70
AFK H I+ G+ P
Sbjct: 72 AFKVHGIEAKGVTIDVP 88
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 71 VNAISFH-QEYNTFATGGSDGYVNIWD-------GFNKKRLC---QFHRYDTGITSLFHQ 119
V + F+ ++ N A+GG++G + IWD N L D I+ ++Q
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175
Query: 120 EY-NTFATGGSDGYVNIWDGFNKKRLCQF 147
+ FA+ GS + +IWD KK +
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHL 204
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 71 VNAISFHQEYNT---FATGG-SDGYVNIWDGFNKKRLCQF--HRYDTGITSLF--HQEYN 122
++ + +H + +T ATG +D + IWD N Q + GI SL HQ+ +
Sbjct: 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276
Query: 123 TFATGGSDGYVNIWDGFNKKRLCQF 147
+ G D V +W+ + ++L QF
Sbjct: 277 LLLSSGRDNTVLLWNPESAEQLSQF 301
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 83 FATGGSDGYVNI-------WDGFNKKRLCQFHRYDTGITSLFHQEYNT-FATGGSDGYVN 134
A+ G+DG + + W F K+ LC Y+ + T ATGG DG VN
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWLELNGKTILATGGDDGIVN 322
Query: 135 IW 136
W
Sbjct: 323 FW 324
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 57 CHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 95
CH + E + K +N + ATGG DG VN W
Sbjct: 292 CHGVYEINVVKWLELNGKTI------LATGGDDGIVNFW 324
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 4 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 63
++++ E+ T I P K+ +L G+ A + T K + F H+I E+
Sbjct: 252 VLKKYETDCPLNTAVIT--PLKEFIILGG--GQEAKDVTTTSANEGKFEARF-YHKIFEE 306
Query: 64 GIEKIY----PVNAISFHQEYNTFATGGSDGYVNI 94
I ++ P+N ++ + ++A+GG DG++ +
Sbjct: 307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 83 FATGGSDGYVNIWDGFNKKRLCQF----HRYDTGITSLFHQEYNTFATGGS--DGYVNIW 136
A+GG+D V IWD + + +F H + + N ATGG D ++ W
Sbjct: 232 LASGGNDNVVQIWDA--RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 137 DGFNKKRLCQFHRYDTG--ITSLCFS 160
+ R+ + D G +TSL +S
Sbjct: 290 NAATGARV---NTVDAGSQVTSLIWS 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 83 FATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDG 138
ATG SD ++ +WD N+K R F ++ F + A+ +DG + +WD
Sbjct: 722 LATGSSDCFLKLWD-LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 83 FATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
+G D + IWD KR+ H TG + TG SD V +WD
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGH---TGSVLCLQYDERVIITGSSDSTVRVWD 199
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 125 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
A+GG DG V +WD K+L ++ I +LCFS
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFS 611
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 110 DKTLKIWD 117
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 108 DKTLKIWD 115
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 71 VNAISFHQEYN--TFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLFHQEYNTFAT 126
VN F + N ATG +D ++ +WD N+K R F ++ F + A+
Sbjct: 709 VNCCHFTNKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNSVNHCRFSPDDELLAS 767
Query: 127 GGSDGYVNIWD 137
+DG + +WD
Sbjct: 768 CSADGTLRLWD 778
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 71 VNAISFHQEYN--TFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLFHQEYNTFAT 126
VN F + N ATG +D ++ +WD N+K R F ++ F + A+
Sbjct: 702 VNCCHFTNKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760
Query: 127 GGSDGYVNIWD 137
+DG + +WD
Sbjct: 761 CSADGTLRLWD 771
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 92 DKTLKIWD 99
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 92 DKTLKIWD 99
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 86 DKTLKIWD 93
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 82 DKTLKIWD 89
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 92 DKTLKIWD 99
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 86 DKTLKIWD 93
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 89 DKTLKIWD 96
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 103 DKTLKIWD 110
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 91 DKTLKIWD 98
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 89 DKTLKIWD 96
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 87 DKTLKIWD 94
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 85 DKTLKIWD 92
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 89 DKTLKIWD 96
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A+ +D + IW ++ K + GI+ + + + N +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 89 DKTLKIWD 96
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLFHQEYNTFATGG 128
V +S + +GG D V +WD K L + H + + + F + G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 129 SDGYVNIWDGFNKKRLCQ--FHRYDTGITSLCF 159
DG + +WD K + F DT TS+ +
Sbjct: 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 83 FATGGSDGYVNIWDGFNKKRLCQF-------HRYDTGITSLFHQEYNTFATGGSDGYVNI 135
TG D +WD +R+ F H D S+ N F +G D V +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 136 WD-GFNKKRLCQFHRYDTGITSLCFSYD 162
WD + + +H ++ I S+ F D
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPD 260
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 81 NTFATGGSDGYVNIWD-GFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG 138
N F +G D V +WD + + +H ++ I S+ F + F TG DG ++D
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Query: 139 FNKKRLCQFHR 149
+L ++R
Sbjct: 279 RTGHQLQVYNR 289
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
V+++ F A +D + IW ++ K + GI+ + + + N +
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 130 DGYVNIWD 137
D + IWD
Sbjct: 89 DKTLKIWD 96
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 70 PVNAISFH-QEYNTFATGGSDGYVNIWD---GFNKKRLCQFHRYDTGITSLFHQEYNTFA 125
P++ + H + + ATGG DG ++IWD G L + H +
Sbjct: 238 PLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLF 297
Query: 126 TGGSDGYVNIWDG 138
T DG + WD
Sbjct: 298 TCSEDGSLWHWDA 310
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 87 GSDGYVNIWDGFNKKRLCQFHRYDTGI--TSLFHQEYNTFATGGSDGYVNIWDGFNKKRL 144
G D V +W+ N K L H TG T + + A+GG DG +WD K L
Sbjct: 192 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Query: 145 CQFHRYDTGITSLCFS 160
D I +LCFS
Sbjct: 251 YTLDGGDI-INALCFS 265
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 87 GSDGYVNIWDGFNKKRLCQFHRYDTGI--TSLFHQEYNTFATGGSDGYVNIWDGFNKKRL 144
G D V +W+ N K L H TG T + + A+GG DG +WD K L
Sbjct: 169 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Query: 145 CQFHRYDTGITSLCFS 160
D I +LCFS
Sbjct: 228 YTLDGGDI-INALCFS 242
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLFHQEYNTFATGGSDGYVNIWDG 138
T D + IWD K + + + ++ ++FH +G DG + IW+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLFHQEYNTFATGGSDGYVNIWDG 138
T D + IWD K + + + ++ ++FH +G DG + IW+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTF-ATGGSDGYVNIWDGFN 140
FA+ G DG + +W+ + R F +++ + L + ATGG D + IWD N
Sbjct: 187 FASVGWDGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 50 KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 99
+++Y FK H VN +S ATGG D + IWD N
Sbjct: 204 QIRYTFKAHESN---------VNHLSISPNGKYIATGGKDKKLLIWDILN 244
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 71 VNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRY--------DTGITSLFHQEY 121
V + F + F T GSD ++ +DG + +F +Y GI +L +
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDG----KSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 122 NTFATGGSDGYVNIWD 137
FAT G+D + +WD
Sbjct: 265 QKFATVGADATIRVWD 280
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 71 VNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRY--------DTGITSLFHQEY 121
V + F + F T GSD ++ +DG + +F +Y GI +L +
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDG----KSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 122 NTFATGGSDGYVNIWD 137
FAT G+D + +WD
Sbjct: 265 QKFATVGADATIRVWD 280
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 61 KEDGIEKIYP--VNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKR--------LCQF--- 106
K+ +E+I+ +N + E +GGSDG + ++D N R +C
Sbjct: 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD 93
Query: 107 ----HRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
HRY + + F + D + +WD
Sbjct: 94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGS 129
P++ + F+ + DG + IW G N F+ + I S + +
Sbjct: 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSM 308
Query: 130 DGYVNIW 136
DG V +W
Sbjct: 309 DGSVRLW 315
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 109
V ++SF+ T + G DG + WD K+R+ + +
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLFHQEYNTFATGGSDGYVNIWD 137
T D + IWD K + + + ++ ++FH +G DG + IW+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 109
V ++SF+ T + G DG + WD K+R+ + +
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 26.2 bits (56), Expect = 8.2, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLFHQEYNTFATGGSDGYVNIWD 137
T D + IWD K + + + ++ ++FH +G DG + IW+
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,360,034
Number of Sequences: 62578
Number of extensions: 224731
Number of successful extensions: 722
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 162
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)