RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1859
(162 letters)
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 72.2 bits (175), Expect = 3e-16
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 2/141 (1%)
Query: 3 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM--QKMKYAFKCHRI 60
++GY SSI+GR AVE+ D + ++AF+CHR+
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQE 120
YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303
Query: 121 YNTFATGGSDGYVNIWDGFNK 141
N SD ++
Sbjct: 304 DNILCLATSDDTFKTNAAIDQ 324
Score = 46.0 bits (107), Expect = 4e-07
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 69 YPVNAISFHQEYNTFATGGSDGYVNIWD------GFNKKRLCQFHRYDTGITSL------ 116
+ +E +A DG V + +N + F + +
Sbjct: 195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254
Query: 117 ----FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
F + T GSDG ++ W+ +K++ F +++ + + +
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACS 303
Score = 38.3 bits (87), Expect = 2e-04
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 4/84 (4%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
++ I + DG + ++ L Q RY + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 127 GGSDGYVNIWDGFNKKRLCQFHRY 150
G+ + Q
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTN 97
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 67.1 bits (162), Expect = 2e-14
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 12/122 (9%)
Query: 17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
I FPN + S + + L E+ + + ++SF
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-----------GITSVSF 278
Query: 77 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNI 135
+ G D N+WD R +D ++ L + ATG D ++ I
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 136 WD 137
W+
Sbjct: 339 WN 340
Score = 64.0 bits (154), Expect = 2e-13
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNI--WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
+NAI F N FATG D + + GITS+ F +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 127 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
G D N+WD R +D ++ L + D
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
Score = 46.7 bits (109), Expect = 3e-07
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 3/118 (2%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
+ + + V ++S + F +G D +WD F
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 108 RYDTGITSL-FHQEYNTFATGGSDGYVNI--WDGFNKKRLCQFHRYDTGITSLCFSYD 162
+++ I ++ F N FATG D + + GITS+ FS
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Score = 39.3 bits (90), Expect = 9e-05
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG 128
+ A+ + + + DG + IWD + ++ + + + + N A GG
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 129 SDGYVNIWDGFNKKRLCQFHRYDTG 153
D +I++ ++ + R G
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAG 141
Score = 35.5 bits (80), Expect = 0.002
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 112 GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
I ++ + + + DG + IWD + ++ + + + ++
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 64.8 bits (156), Expect = 1e-13
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Query: 17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
+ + Q V S++ + L K K V +++
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVLSVAT 316
Query: 77 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-------FHQEYNTFATGGS 129
Q +G D V WD + L + + S+ EYN FATG
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 376
Query: 130 DGYVNIWD 137
D IW
Sbjct: 377 DCKARIWK 384
Score = 55.6 bits (132), Expect = 3e-10
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 20/159 (12%)
Query: 18 CIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
+ P Y+ + S++ V +TG ++++ + +D V ++ F
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD------SVYSVVF 262
Query: 77 HQEYNTFATGGSDGYVNIWDGFNKKR------------LCQFHRYDTGITSL-FHQEYNT 123
++ + +G D V +W+ N + + + S+ Q
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322
Query: 124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
+G D V WD + L + + S+ +
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361
Score = 31.3 bits (69), Expect = 0.042
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 45 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC 104
+ + + +I + ++ + + +G D V IWD +
Sbjct: 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199
Query: 105 QFHRYDTGITSLFHQEY-NTFATGGSDGYVNIWD---GFNKKRLCQFHRYDTG----ITS 156
D T A G D V +WD GF +RL + TG + S
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259
Query: 157 LCFSYD 162
+ F+ D
Sbjct: 260 VVFTRD 265
Score = 30.5 bits (67), Expect = 0.076
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGS 129
V + F + AT G + ++ + + + + NT ++ S
Sbjct: 64 VVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKD--PENLNTSSSPSS 120
Query: 130 DGYVN 134
D Y+
Sbjct: 121 DLYIR 125
Score = 25.1 bits (53), Expect = 5.2
Identities = 18/91 (19%), Positives = 33/91 (36%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGS 129
+ ++ F + ATG D + IWD N+K + ++ I SL + GS
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 130 DGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
+ + G+T++ S
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 57.8 bits (138), Expect = 3e-11
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG 128
V + FH + D + +WD NK+ + + ++ +TSL FH+ TG
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308
Query: 129 SDGYVNIWD 137
D V +W+
Sbjct: 309 VDQTVKVWE 317
Score = 57.4 bits (137), Expect = 5e-11
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 1/107 (0%)
Query: 57 CHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
I + + +G D + +WD L +D + +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
Query: 117 -FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
FH + D + +WD NK+ + + ++ +TSL F
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
Score = 42.0 bits (97), Expect = 1e-05
Identities = 9/79 (11%), Positives = 19/79 (24%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGS 129
PV + FH ++ + D + +WD + + + S
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78
Query: 130 DGYVNIWDGFNKKRLCQFH 148
F +
Sbjct: 79 ADMTIKLWDFQGFECIRTM 97
Score = 39.0 bits (89), Expect = 1e-04
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 21/112 (18%)
Query: 72 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---------------------RYD 110
+ +Q+ A+ +D V +W K+ +
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 111 TGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
T + +G D + +WD L +D + + F
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 258
Score = 35.1 bits (79), Expect = 0.002
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
R + + + + + V M+ H + V ++ F
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNAHE---------HFVTSLDF 297
Query: 77 HQEYNTFATGGSDGYVNIWD 96
H+ TG D V +W+
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317
Score = 35.1 bits (79), Expect = 0.002
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 112 GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 159
+T + FH ++ + D + +WD + + + F
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 53.3 bits (126), Expect = 2e-09
Identities = 11/84 (13%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
P++ +++++ A ++ V+I++ G ++ + ++ +T + + + N T
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 127 GGSDGYVNIWDGFNKKRLCQFHRY 150
G+D +W +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVIL 92
Score = 36.0 bits (81), Expect = 0.001
Identities = 11/107 (10%), Positives = 29/107 (27%)
Query: 42 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK 101
++ P + + V+ + F + A D V + D K
Sbjct: 175 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234
Query: 102 RLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 148
+ + ++ ++ G D + ++ + F
Sbjct: 235 AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281
Score = 36.0 bits (81), Expect = 0.001
Identities = 7/53 (13%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 113 ITSL-FHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLCFSYD 162
I+ ++++ A ++ V+I++ G ++ + ++ +T + ++ D
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Score = 29.8 bits (65), Expect = 0.16
Identities = 11/149 (7%), Positives = 31/149 (20%), Gaps = 1/149 (0%)
Query: 14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 73
+ + G+V + + P+ A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 74 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYV 133
++F E + A G D + ++ + F + +
Sbjct: 249 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 134 NIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
+G + ++ +
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSG 336
Score = 29.4 bits (64), Expect = 0.16
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 70 PVNAISFHQEYNT----FATGGSDGYVNIWD 96
V+ IS F T G DG ++IWD
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
Score = 26.4 bits (56), Expect = 1.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 122 NTFATGGSDGYVNIWD 137
+ F T G DG ++IWD
Sbjct: 342 SQFCTTGMDGGMSIWD 357
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 50.2 bits (118), Expect = 2e-08
Identities = 12/90 (13%), Positives = 26/90 (28%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
++ K V ++ F F + G D +N W + Q
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
Query: 108 RYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
+ ++ + TG D +++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 42.5 bits (98), Expect = 7e-06
Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 1/112 (0%)
Query: 51 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
++ + + + ++ + A G V + +
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266
Query: 111 TGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
++ F F + G D +N W + Q + + S S D
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVD 317
Score = 34.8 bits (78), Expect = 0.003
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQ--FHRYDTGITSL-FHQEYNT 123
V A++ TG G V +WD NK + Q D I S + T
Sbjct: 53 VVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 161
GG ++IWD + + +
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 44.1 bits (102), Expect = 2e-06
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF- 106
+ + + ED E + + FAT G+D + +WD K + ++
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290
Query: 107 ---HRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
+ + + DG +N ++
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 33.7 bits (75), Expect = 0.007
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 2/117 (1%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
A K+ + + S + + F K
Sbjct: 190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 249
Query: 108 RYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLCFSYD 162
GI +L + FAT G+D + +WD K + ++ + G +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306
Score = 29.9 bits (65), Expect = 0.14
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 71 VNAISFHQEYNTFATG-GSDGYVNIWDGFNKK--RLCQFHRYDTG-ITSL-FHQEYN--T 123
+S+ N A G +V D + K + QF + + +T++ F
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTG--------ITSLCFSYD 162
+G G V +W K I+ + + ++
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126
Score = 25.3 bits (53), Expect = 4.6
Identities = 7/83 (8%), Positives = 15/83 (18%), Gaps = 2/83 (2%)
Query: 70 PVNAISFHQEYN--TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATG 127
V + F +G G V +W K + + +
Sbjct: 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Query: 128 GSDGYVNIWDGFNKKRLCQFHRY 150
+ +
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWD 147
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 43.6 bits (101), Expect = 3e-06
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATG 127
+ + N +G +D V IWD + L Q + N T
Sbjct: 219 LTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTG-----ITSLCFSYD 162
DG V +WD + + ++G + + S
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
Score = 39.0 bits (89), Expect = 1e-04
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 95 WDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI 154
W K +D + + N +G D + +W K L + G+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 155 TSLCFSYD 162
S +
Sbjct: 61 WSSQMRDN 68
Score = 38.6 bits (88), Expect = 1e-04
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFN 140
+G D + +WD + + + + + ++ N +G +D V IWD
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKT 246
Query: 141 KKRLCQFHRY 150
+ L
Sbjct: 247 GQCLQTLQGP 256
Score = 35.6 bits (80), Expect = 0.002
Identities = 11/115 (9%), Positives = 30/115 (26%), Gaps = 1/115 (0%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
+ + + + + +G D V +WD + L
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 174
Query: 108 RYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
+ T + +G D + +WD + + + + + +
Sbjct: 175 GH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228
Score = 30.9 bits (68), Expect = 0.051
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
+ + F +G D + +W K L + G+ S
Sbjct: 20 ITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Score = 27.5 bits (59), Expect = 0.80
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 4/31 (12%)
Query: 70 PVNAISFHQEYNTFATGGSDG----YVNIWD 96
V I A G +G + + D
Sbjct: 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 41.5 bits (95), Expect = 1e-05
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD-GFNKKRLCQF 106
K K A E + ATG D + I+ K +
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254
Query: 107 HRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
+ + G+ +L + +T + G+D + W+
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
Score = 31.9 bits (70), Expect = 0.027
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 76 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNI 135
+ + + + W K + + E + ATG D + I
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241
Query: 136 WD-GFNKKRLCQFHRYDTGITSLCFSYD 162
+ K + + + G+ +L +
Sbjct: 242 YSVKRPMKIIKALNAHKDGVNNLLWETP 269
Score = 28.0 bits (60), Expect = 0.46
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD 96
+ A++ + +G DG + W
Sbjct: 15 GITALTVN----PLISGSYDGRIMEWS 37
Score = 28.0 bits (60), Expect = 0.60
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 99 NKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC 158
+ + L ++ GIT+L N +G DG + W + + I SL
Sbjct: 2 HDEVLKTISGHNKGITAL---TVNPLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLD 53
Query: 159 FSYD 162
S
Sbjct: 54 NSKA 57
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 41.1 bits (94), Expect = 2e-05
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLC 104
+ V +S+ + ATG D V +W+ + +
Sbjct: 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263
Query: 105 QFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
+ + + S+ T + G D + W+
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 38.8 bits (88), Expect = 1e-04
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLFHQEYNTFATGG 128
+ A+S + T + ++G++N WD F IT + T
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 129 SDGYVNIWDGFNKKRLCQFHRY 150
D ++ +
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVA 95
Score = 29.6 bits (64), Expect = 0.14
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 112 GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLCFSY 161
IT+L + T + ++G++N WD F IT + +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 40.6 bits (93), Expect = 4e-05
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD------GFNKKRLCQFHRYDTGI--------TS 115
+ ++S + + DGY+ +WD K + + +G+
Sbjct: 16 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73
Query: 116 LFHQEYNTFATGGSDGYVNIWD 137
E AT G + +
Sbjct: 74 RDAFELCLVATTSFSGDLLFYR 95
Score = 37.1 bits (84), Expect = 5e-04
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-----FHQEYNTF 124
V ++SF+ T + G DG + WD K+R+ + + I + ++
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350
Query: 125 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
A G + G R + + +C
Sbjct: 351 AEPGVFDVKFLKKG---WRSGMGADLNESLCCVCLD 383
Score = 35.2 bits (79), Expect = 0.002
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 21/136 (15%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
+ I + ++ F + + A + + +
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270
Query: 108 RYDTGITSL-----------------FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 150
S F+ T + G DG + WD K+R+ + +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330
Query: 151 DTGI----TSLCFSYD 162
I L
Sbjct: 331 CDDIEIEEDILAVDEH 346
Score = 27.9 bits (60), Expect = 0.63
Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 18/95 (18%)
Query: 76 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG------------------ITSLF 117
+ G IW + TS+
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 118 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT 152
E ATG ++G V I + + L F +
Sbjct: 192 ISERGLIATGFNNGTVQISELSTLRPLYNFESQHS 226
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 40.3 bits (92), Expect = 4e-05
Identities = 11/126 (8%), Positives = 35/126 (27%), Gaps = 8/126 (6%)
Query: 14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 73
++ P+ + + +G + G + + + V
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG------SVFG 243
Query: 74 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLFHQEYNTFATGGSDG 131
+++ + A+ +D + IW+ K + ++G
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 132 YVNIWD 137
++N +
Sbjct: 304 FINFVN 309
Score = 30.3 bits (66), Expect = 0.083
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 2/79 (2%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS 129
+ + + V + + + T A+G
Sbjct: 20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 130 DGYVNIWDGFNKKRLCQFH 148
G V IWD + +
Sbjct: 79 HGNVRIWDTTQTTHILKTT 97
Score = 26.8 bits (57), Expect = 1.4
Identities = 10/118 (8%), Positives = 27/118 (22%), Gaps = 3/118 (2%)
Query: 48 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
+ K + P ++ + + F L
Sbjct: 177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 236
Query: 108 RYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSLCFSYD 162
+ + + A+ +D + IW+ K R + + ++
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Score = 24.5 bits (51), Expect = 7.0
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
A+G G V IWD + +
Sbjct: 60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 97
Score = 24.5 bits (51), Expect = 7.8
Identities = 3/35 (8%), Positives = 7/35 (20%)
Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
+ V + + + T S
Sbjct: 35 CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 39.9 bits (91), Expect = 6e-05
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSD 130
+ + F Y TG D + ++D NKK L Q +D G+ +L + +G +D
Sbjct: 16 ITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73
Query: 131 GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 161
V +WD F +++ + L
Sbjct: 74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104
Score = 38.3 bits (87), Expect = 2e-04
Identities = 14/138 (10%), Positives = 36/138 (26%), Gaps = 1/138 (0%)
Query: 1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
I +++++ + + + + +
Sbjct: 214 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY 273
Query: 61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLFHQ 119
++AI+ + GS+ NI++ + K + D I S+ +
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333
Query: 120 EYNTFATGGSDGYVNIWD 137
A DG +
Sbjct: 334 GKTLVAAVEKDGQSFLEI 351
Score = 38.3 bits (87), Expect = 2e-04
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 110 DTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
T + + E N TG D + ++D NKK L Q +D G+ +L +++
Sbjct: 12 MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 36.0 bits (81), Expect = 0.001
Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 5/100 (5%)
Query: 39 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF 98
+ D + +R+ I + + + G + +D
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 306
Query: 99 NKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD 137
+K +T L + T DG + +
Sbjct: 307 TRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 34.4 bits (77), Expect = 0.004
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 8/70 (11%)
Query: 76 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEY--------NTFATG 127
+ +G DG + +WD T + H +
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 283
Query: 128 GSDGYVNIWD 137
D + IWD
Sbjct: 284 SHDDTILIWD 293
Score = 33.7 bits (75), Expect = 0.007
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD--- 137
+G SD + +WD + + + +G DG + +WD
Sbjct: 189 RLVVSGSSDNTIRLWD-IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247
Query: 138 ------GFNKKRLCQFHRYDTGITSLCFS 160
L + + L F
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276
Score = 30.6 bits (67), Expect = 0.062
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 101 KRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
+R+ G+ L + +G D + IWD + + + L +
Sbjct: 6 QRIHCRSETSKGVYCL-QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 161 Y 161
Sbjct: 65 E 65
Score = 30.2 bits (66), Expect = 0.091
Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSD 130
V + + + +G D + IWD + + + L + E
Sbjct: 18 VYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDS 75
Query: 131 GYVNIWDGFNKKRLCQFHRY 150
+ H
Sbjct: 76 TVRVWDVNTGEMLNTLIHHC 95
Score = 30.2 bits (66), Expect = 0.11
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD 96
V + F + + D + IWD
Sbjct: 269 RVFRLQFDE--FQIVSSSHDDTILIWD 293
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 32.8 bits (73), Expect = 0.012
Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 11/150 (7%)
Query: 22 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP---------VN 72
V + G+ L +G + DG
Sbjct: 203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262
Query: 73 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLFHQEYNTFATGGSD 130
+ + + + +V + D +RL +F I ++ +A D
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 322
Query: 131 GYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
+ I D + + L ++ G + +
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTA 352
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 32.5 bits (73), Expect = 0.016
Identities = 14/100 (14%), Positives = 23/100 (23%), Gaps = 9/100 (9%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-------ITSLFHQEYNT 123
V+ G DG VN+ D + K+ G + + E
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 124 -FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
A I DG + + +
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 162
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 30.1 bits (66), Expect = 0.12
Identities = 6/57 (10%), Positives = 22/57 (38%)
Query: 88 SDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRL 144
+ +D +K + + T F ++ + GG+ + +++ +++
Sbjct: 270 VLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Score = 27.4 bits (59), Expect = 0.76
Identities = 3/34 (8%), Positives = 16/34 (47%)
Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL 103
++F ++ + GG+ + +++ +++
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 29.4 bits (64), Expect = 0.19
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 89 DGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF- 147
+ +D + + + + + +T GG+ G + +D ++ Q
Sbjct: 259 YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
Query: 148 --HRYDTGITSL-CFSYD 162
+ S+ F+ D
Sbjct: 319 LPGNASMSLASVRLFTRD 336
Score = 27.5 bits (59), Expect = 0.91
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL 103
+++ + +T GG+ G + +D ++
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 28.0 bits (61), Expect = 0.51
Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKK-------RLCQFHRYDTGITSLFHQEYNT 123
V+ G D +++ D + K+ ++ R +++ T
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
A I DG + + + + +
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.447
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,872
Number of extensions: 29748
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 77
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.9 bits)