BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1860
(659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 193/573 (33%), Positives = 289/573 (50%), Gaps = 26/573 (4%)
Query: 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDD 72
E ++L +F G L+GL Y P PY + + + V+ YV++E GTG+VHQAP FG +D
Sbjct: 271 EGTQVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 328
Query: 73 YRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGS 132
G+ ++ VD G V F GLY ++A++ I++ L+ + L S
Sbjct: 329 LETARVYGL-----PLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKEES 381
Query: 133 VKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA 192
HSYP CWR TPL+Y A SWFI+ +L++ N + +WVP +KE R+G WL+
Sbjct: 382 YLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNL 441
Query: 193 RDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK--DLHRESVDSVTIP 250
DWA+SRNRYWGTP+P+WV + +GS EL + + + D HR VD V +
Sbjct: 442 VDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELA 501
Query: 251 SVRPGKPPLRRVPEVFDCWFESGSMPYAQLHXXXXXXXXXXXXXXXXXIAEGIDQTRGWF 310
G +RRVP V D W++SG+MP+A LH IAEGIDQTRGWF
Sbjct: 502 CACGGT--MRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWF 559
Query: 311 YTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370
+L + LF F+N+I +GL+L + GQKMSKSK N DP + ++
Sbjct: 560 NSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWD-----------IIRK 608
Query: 371 DGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNE 430
G + P E R P V E V + + L + ++ +
Sbjct: 609 FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP 668
Query: 431 AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLF-IDNLTNWYVRMNRRRLK 489
MD W+++ + LI+ V + + AY T L F +++L+ WYVR NRRR
Sbjct: 669 PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW 728
Query: 490 GEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL-RHLTGRLERSIHFIMMPQ 548
D + A +L + L + + AP+TPFL E L+QNL R + + S+H P+
Sbjct: 729 KNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPE 788
Query: 549 PNRGIIDQEIERSVKRMQSVVELGRVIRERVTI 581
+ + D+ + ++ + VV+L R R + +
Sbjct: 789 ADPALADEALVAQMRAVLKVVDLARAARAKSGV 821
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 145/574 (25%), Positives = 258/574 (44%), Gaps = 90/574 (15%)
Query: 47 VLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQE--IVCPVDASGCFTAPVSH 104
V+ +VT ++GTG VH AP GEDDY ++ + E ++ P+D G FT
Sbjct: 309 VINGDHVTTDAGTGCVHTAPGHGEDDY-------IVGQQYELPVISPIDDKGVFTEEGGQ 361
Query: 105 FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQ 164
F G++ A+K + L E+ L+ + HSYP WR+ P+I++A P WF + + Q
Sbjct: 362 FEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQ 421
Query: 165 DLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIV---CV 221
D+L +T + + K R N +R+ +W ISR R WG P+P++ +++GE I+ V
Sbjct: 422 DILDAIENTNFKVNWGK-TRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 480
Query: 222 GSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKP--PLRRVPEVFDCWFESGSMPYAQ 279
+A+L G ++ RE+ D + PG P + ++ D WF+SGS
Sbjct: 481 NHVADLFAEHGSNIW--FEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGV 538
Query: 280 LHXXXXXXXXXXXXXXXXXIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQD 339
L EG DQ RGWF + + S A +P++ L+++G V+ +
Sbjct: 539 LETRPELSFPADMYL------EGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGE 592
Query: 340 GQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSK---SKKNYPDPMEVRGRLCPVH 396
G+KMSKS N+I V+ G +++ S +Y L V
Sbjct: 593 GKKMSKS-----------LGNVIVPDQVVKQKGADIARLWVSSTDY---------LADVR 632
Query: 397 VWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSES-LIEFVRK 455
+ + ILK+ +D K+ G+ N + S ES L+E R
Sbjct: 633 ISDE--------ILKQ----TSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRY 680
Query: 456 EMAAYRLYT--------------VVPRLVLFID-NLTNWYVRMNRRRLKGEGGPADCKVA 500
+ R +T + + FI+ L+N+Y+ + L E + + +
Sbjct: 681 LLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRS 740
Query: 501 LNS-LTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMP---QPNRGIIDQ 556
+ + L ++L M +++AP E ++ + H+ E S+H MP + ++ ++D+
Sbjct: 741 MQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVK---EESVHLADMPKVVEVDQALLDK 797
Query: 557 ---------EIERSVKRMQSVVELGRVIRERVTI 581
++ R+++ ++ +G+ + +VTI
Sbjct: 798 WRTFMNLRDDVNRALETARNEKVIGKSLEAKVTI 831
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 131/551 (23%), Positives = 224/551 (40%), Gaps = 80/551 (14%)
Query: 47 VLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPV--SH 104
+L D V ++ GTG + P DY + G+ + V ++ G
Sbjct: 254 ILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL-----KPVSVINLEGRMEGERVPEA 308
Query: 105 FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQ 164
GL +A + ++ +E LV + C R TP+ Y P W++R++ + +
Sbjct: 309 LRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAE 368
Query: 165 DLLKC--NSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVG 222
++LK D +VPE K+ +WL +DW ISR +WG IP W +D C
Sbjct: 369 EVLKGLRRGDIAFVPERWKKVNM-DWLENVKDWNISRQLWWGHQIPAWYCED-----C-- 420
Query: 223 SIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHX 282
++V + R D + + G P L+R +VFD WF S P + L
Sbjct: 421 --------QAVNVPRP-ERYLEDPTSCEAC--GSPRLKRDEDVFDTWFSSALWPLSTLGW 469
Query: 283 XXXXXXXXXXXXXXXXIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQK 342
+ G D W + V + PF+ ++ +GLVL + GQK
Sbjct: 470 PEETEDLKAFYPGDVLVT-GYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQK 528
Query: 343 MSKSKRNYPDPMEPPFKNLIANGL-----VLSSDGQKMS------KSKKNYPDPMEVRGR 391
MSKSK N DP+E + A+ L L++ GQ + + +N+ + + R
Sbjct: 529 MSKSKGNVIDPLE-MVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAAR 587
Query: 392 LCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIE 451
++L + A + L+ ++ + S + + +L E
Sbjct: 588 F---------------VLLSREGFQAKEDTPTLADRFMRSRLSRGVEEI------TALYE 626
Query: 452 FVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTM 511
+ AA +Y +V +WY+ + LK A L +L +VL +
Sbjct: 627 ALDLAQAAREVYELV------WSEFCDWYLEAAKPALK-----AGNAHTLRTLEEVLAVL 675
Query: 512 VRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVEL 571
++++ P PFL LYQ LTG+ E ++ P+P G D+E ER+ + ++ V
Sbjct: 676 LKLLHPMMPFLTSELYQA---LTGKEELALE--AWPEP--GGRDEEAERAFEALKQAVTA 728
Query: 572 GRVIRERVTIP 582
R ++ +P
Sbjct: 729 VRALKAEAGLP 739
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDD 72
E +L +F G L+GL Y P PY + + + V+ YV++E GTG+VHQAP FG +D
Sbjct: 77 EGTPVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 134
Query: 73 YRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGS 132
G+ ++ VD G V F GLY ++A++ I++ L+ + L S
Sbjct: 135 LETARVYGL-----PLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKEES 187
Query: 133 VKHSYP 138
HSYP
Sbjct: 188 YLHSYP 193
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDD 72
E +L +F G L+GL Y P PY + + + V+ YV++E GTG+VHQAP FG +D
Sbjct: 72 EGTPVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 129
Query: 73 YRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGS 132
G+ ++ VD G V F GLY ++A++ I++ L+ + L S
Sbjct: 130 LETARVYGL-----PLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKEES 182
Query: 133 VKHS 136
HS
Sbjct: 183 YLHS 186
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDD 72
E ++L +F G L+GL Y P PY + + + V+ YV++E GTG+VHQAP FG +D
Sbjct: 72 EGTQVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 129
Query: 73 YRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLK 122
G+ ++ VD G V F GLY ++A++ I++ L+
Sbjct: 130 LETARVYGL-----PLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLR 172
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDD 72
E +L +F G L+GL Y P PY + + + V+ YV++E GTG+VHQAP FG +D
Sbjct: 72 EGTPVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAED 129
Query: 73 YRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLK 122
G+ ++ VD G V F GLY ++A++ I++ L+
Sbjct: 130 LETARVYGL-----PLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLR 172
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 359 KNLIANGLVLSSDGQKMSKSKKN---YPDPMEVRG----RLCPVHVWEPVHVWSVCLILK 411
K + NG + +GQKMSKSK N + D +E G RL + + E H K
Sbjct: 636 KGIAVNGFG-TLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAE--HDSDFDWRRK 692
Query: 412 EKVLLANDAEE--KLSFQYNEAEGSTNI----MDAWIISFSESLIEFVRKEMAAYRLYTV 465
E L E +L Q+ E E N+ +D W++ I+ + +R T
Sbjct: 693 EVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 466 VPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEH 525
V I N WY+R R +G A + L +L V VR+MAP+TP +CE
Sbjct: 753 VQWAFYSIMNDLRWYLR----RTEGRDDEAK-RYVLRTLADV---WVRLMAPFTPHICEE 804
Query: 526 LYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVE 570
L++ L E + P+P ++ IE + ++SV+E
Sbjct: 805 LWEKLGG-----EGFVSLAKWPEPVEEWWNETIEAEEEFIRSVME 844
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/450 (21%), Positives = 171/450 (38%), Gaps = 108/450 (24%)
Query: 193 RDWAISRNRYWGTPIPLWVSDDG---------------EEIVCVGSIAELHRLSGISVEK 237
RDW +SR RYWG PIP+ +DG E++V G S I +
Sbjct: 438 RDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGIT------SPIKADP 491
Query: 238 DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYA-----QLHXXXXXXXXXXX 292
+ + +V+ G P LR + FD + ES S YA Q
Sbjct: 492 EWAKTTVN---------GMPALRET-DTFDTFMES-SWYYARYTCPQYKEGMLDSEAANY 540
Query: 293 XXXXXXIAEGIDQT------RGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKS 346
GI+ +F+ L+ + + P + L+ G+VLA + ++
Sbjct: 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGEN 600
Query: 347 -KRNYPDPMEPPFKNLIANGLVLSSDG----------QKMSKSKKNYPDPMEVRGRLCPV 395
+RN+ P++ + +V + D KMSKSK N DP + R
Sbjct: 601 GERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGAD 660
Query: 396 HVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMD-AWIISF--------- 445
V + ++ A+ A+ L +Q + EG+ + W + +
Sbjct: 661 TV-------------RLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVA 707
Query: 446 ----------SESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPA 495
++L V K +A ++ + R F + MN K P
Sbjct: 708 ALNVDALTENQKALRRDVHKTIA--KVTDDIGRRQTFNTAIAAIMELMN----KLAKAPT 761
Query: 496 DCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIID 555
D + + + L +VR++ P+TP +C L+Q L+ G ++ + P P + D
Sbjct: 762 DGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKG-EGDIDNA------PWP---VAD 811
Query: 556 QE--IERSVKRMQSVVELGRVIRERVTIPI 583
++ +E S VV++ +R ++T+P+
Sbjct: 812 EKAMVEDST---LVVVQVNGKVRAKITVPV 838
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 140 CWRSDTPLIYKAVPSWFIRVQHMNQDLLK-CNSDTYWVPEFVKEKRFGNWLREARDWAIS 198
CWR DT + K +P WFI++ +LL + +W P+ VK + NW+ + I+
Sbjct: 196 CWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHW-PDTVKTMQR-NWIGRSEGVEIT 253
Query: 199 RN 200
N
Sbjct: 254 FN 255
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 359 KNLIANGLVLSSDGQKMSKSKKN---YPDPMEVRG----RLCPVHVWEPVHVWSVCLILK 411
K + NG + +GQKMSKSK N + D +E G RL + + E H K
Sbjct: 636 KGIAVNGFG-TLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAE--HDSDFDWRRK 692
Query: 412 EKVLLANDAEE--KLSFQYNEAEGSTNI----MDAWIISFSESLIEFVRKEMAAYRLYTV 465
E L E +L Q+ E E N+ +D W++ I+ + +R T
Sbjct: 693 EVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 466 VPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEH 525
V I N WY+R R +G A + L +L V VR+MAP+TP +CE
Sbjct: 753 VQWAFYSIMNDLRWYLR----RTEGRDDEAK-RYVLRTLADV---WVRLMAPFTPHICEE 804
Query: 526 LYQNL 530
L++ L
Sbjct: 805 LWEKL 809
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 353 PMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P + PF+ LI G++L DGQKMSKS N +P E+
Sbjct: 389 PTKEPFQKLINQGMILGKDGQKMSKSLGNVVNPDEI 424
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 310 FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
Y L ++ T + PF+ LI G++L +DGQKMSKS N +P E
Sbjct: 382 LYDLKIVPT----KEPFQKLINQGMILGKDGQKMSKSLGNVVNPDE 423
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 142 RSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA--------- 192
R P+ K + W +++ + LL+ + W P+ +K K NW+ +
Sbjct: 187 RGSFPVYKKPMKQWVLKITNYADRLLEDLNLLDW-PDSLK-KLQTNWIGKEEIDGKITYK 244
Query: 193 -RDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGI 233
+DW +R RYWG P P++ +D + + + EL + I
Sbjct: 245 LQDWIFARQRYWGEPFPVYFDEDN-NVYLIDELVELPHMENI 285
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 193 RDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSV 252
RDW ISR RYWGTPIP+ V + +V V E++L D + +
Sbjct: 420 RDWLISRQRYWGTPIPM-VHCEACGVVPV-------------PEEELPVLLPDLKDVEDI 465
Query: 253 RP-GKPPLRRVPEVFDC 268
RP GK PL PE ++
Sbjct: 466 RPKGKSPLEAHPEFYET 482
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 140 CWR-SDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVK 181
CWR DTP+ + + W++R+ + LLK W PE VK
Sbjct: 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW-PEKVK 217
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 193 RDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSV 252
RDW ISR RYWGTPIP+ V + +V V E++L D + +
Sbjct: 420 RDWLISRQRYWGTPIPM-VHCEACGVVPV-------------PEEELPVLLPDLKDVEDI 465
Query: 253 RP-GKPPLRRVPEVFDC 268
RP GK PL PE ++
Sbjct: 466 RPKGKSPLEAHPEFYET 482
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 140 CWR-SDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVK 181
CWR DTP+ + + W++R+ + LLK W PE VK
Sbjct: 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW-PEKVK 217
>pdb|2WVR|C Chain C, Human Cdt1:geminin Complex
Length = 546
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 429 NEAEGSTNIMDAWII-----SFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRM 483
EA+G+ + A + FS+ L+E V++ A+ L ++ P +V+ D LT W+ R
Sbjct: 277 QEADGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAF-LASLSPAMVVPEDQLTRWHPRF 335
Query: 484 N 484
N
Sbjct: 336 N 336
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPM 386
P +++L G +L DG+KMSK+ N DP
Sbjct: 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 326 FRNLIANGLVLAQDGQKMSKSKRNYPDPM 354
+R+L G +L DG+KMSK+ N DP
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPM 386
P +++L G +L DG+KMSK+ N DP
Sbjct: 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 326 FRNLIANGLVLAQDGQKMSKSKRNYPDPM 354
+R+L G +L DG+KMSK+ N DP
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPM 386
P +++L G +L DG+KMSK+ N DP
Sbjct: 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 326 FRNLIANGLVLAQDGQKMSKSKRNYPDPM 354
+R+L G +L DG+KMSK+ N DP
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPF 309
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA-RDWA 196
P C P+ ++ ++I++Q + L + W P + +W+ E + A
Sbjct: 171 PRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNV--KNMVLSWIEEGLEERA 228
Query: 197 ISRNRYWGTPIPL 209
I+R+ WG P+PL
Sbjct: 229 ITRDLNWGIPVPL 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,465,181
Number of Sequences: 62578
Number of extensions: 818378
Number of successful extensions: 1613
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1554
Number of HSP's gapped (non-prelim): 42
length of query: 659
length of database: 14,973,337
effective HSP length: 105
effective length of query: 554
effective length of database: 8,402,647
effective search space: 4655066438
effective search space used: 4655066438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)