Query psy1860
Match_columns 659
No_of_seqs 368 out of 2476
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:09:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02882 aminoacyl-tRNA ligase 100.0 2E-129 5E-134 1143.7 55.8 640 2-658 260-927 (1159)
2 PTZ00427 isoleucine-tRNA ligas 100.0 1E-128 2E-133 1132.8 55.4 639 2-658 369-1052(1205)
3 KOG0434|consensus 100.0 4E-128 8E-133 1003.2 38.6 637 1-658 258-916 (1070)
4 COG0525 ValS Valyl-tRNA synthe 100.0 4E-125 1E-129 1040.3 47.0 592 14-658 208-832 (877)
5 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-125 3E-130 1058.2 36.5 517 2-555 268-801 (933)
6 PRK06039 ileS isoleucyl-tRNA s 100.0 2E-119 5E-124 1056.9 56.2 591 2-620 260-857 (975)
7 PLN02381 valyl-tRNA synthetase 100.0 1E-116 3E-121 1030.7 51.5 615 3-658 327-1015(1066)
8 PTZ00419 valyl-tRNA synthetase 100.0 2E-114 5E-119 1019.3 51.6 589 24-658 281-947 (995)
9 PRK05729 valS valyl-tRNA synth 100.0 1E-112 3E-117 994.0 49.0 570 25-658 240-829 (874)
10 PRK14900 valS valyl-tRNA synth 100.0 1E-112 3E-117 999.2 49.2 579 24-658 253-860 (1052)
11 TIGR00422 valS valyl-tRNA synt 100.0 4E-112 8E-117 991.3 49.8 579 24-658 237-834 (861)
12 PRK05743 ileS isoleucyl-tRNA s 100.0 2E-112 5E-117 990.3 43.6 568 2-623 268-857 (912)
13 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-111 4E-116 984.3 47.2 577 2-622 285-896 (961)
14 PLN02843 isoleucyl-tRNA synthe 100.0 4E-111 8E-116 980.9 49.0 575 3-622 285-899 (974)
15 PLN02943 aminoacyl-tRNA ligase 100.0 6E-110 1E-114 970.9 51.0 576 25-658 293-907 (958)
16 KOG0432|consensus 100.0 1E-109 2E-114 892.0 41.2 588 25-658 296-948 (995)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 4E-108 8E-113 958.9 44.0 557 2-592 266-849 (861)
18 PRK13208 valS valyl-tRNA synth 100.0 3E-105 6E-110 927.0 47.6 553 24-626 237-792 (800)
19 KOG0433|consensus 100.0 5E-101 1E-105 808.6 38.1 507 4-560 287-821 (937)
20 PRK12300 leuS leucyl-tRNA synt 100.0 1.8E-99 4E-104 880.6 41.6 575 3-658 211-836 (897)
21 PLN02959 aminoacyl-tRNA ligase 100.0 2E-92 4.4E-97 829.8 39.2 504 13-581 350-922 (1084)
22 TIGR00395 leuS_arch leucyl-tRN 100.0 3.5E-89 7.5E-94 797.7 40.6 515 3-590 251-828 (938)
23 PF00133 tRNA-synt_1: tRNA syn 100.0 7.6E-88 1.6E-92 756.5 11.5 363 2-396 237-601 (601)
24 PRK00390 leuS leucyl-tRNA synt 100.0 7.3E-79 1.6E-83 700.9 24.0 442 15-585 293-765 (805)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 5.2E-79 1.1E-83 703.0 19.9 447 16-582 291-799 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 4.1E-78 8.9E-83 695.3 19.8 417 20-554 382-892 (963)
27 PRK12267 methionyl-tRNA synthe 100.0 5.9E-60 1.3E-64 537.1 22.9 395 56-532 41-478 (648)
28 COG0495 LeuS Leucyl-tRNA synth 100.0 2E-59 4.3E-64 521.5 16.0 406 42-557 321-753 (814)
29 KOG0437|consensus 100.0 4.8E-58 1E-62 482.5 16.9 473 11-552 343-885 (1080)
30 PRK12268 methionyl-tRNA synthe 100.0 1.3E-57 2.9E-62 511.5 20.3 336 138-549 172-521 (556)
31 TIGR00398 metG methionyl-tRNA 100.0 1.2E-56 2.7E-61 500.8 24.7 323 134-531 163-502 (530)
32 PRK00133 metG methionyl-tRNA s 100.0 9.1E-55 2E-59 494.9 24.3 345 110-532 99-503 (673)
33 COG0143 MetG Methionyl-tRNA sy 100.0 1.3E-54 2.8E-59 469.2 21.0 394 56-532 42-512 (558)
34 PRK11893 methionyl-tRNA synthe 100.0 2.4E-54 5.3E-59 482.1 22.2 344 111-531 99-475 (511)
35 PLN02610 probable methionyl-tR 100.0 8.9E-54 1.9E-58 487.2 25.7 391 59-532 58-532 (801)
36 KOG0435|consensus 100.0 1.1E-53 2.4E-58 447.1 18.7 421 29-553 319-798 (876)
37 PLN02224 methionine-tRNA ligas 100.0 6.5E-53 1.4E-57 466.8 23.3 346 110-532 166-546 (616)
38 cd00817 ValRS_core catalytic c 100.0 5.8E-53 1.3E-57 449.5 15.1 253 111-395 117-382 (382)
39 KOG0436|consensus 100.0 4.2E-51 9E-56 406.9 20.5 389 61-532 81-527 (578)
40 cd00818 IleRS_core catalytic c 100.0 4.4E-49 9.5E-54 412.9 13.8 221 111-395 118-338 (338)
41 cd00668 Ile_Leu_Val_MetRS_core 100.0 3.1E-39 6.7E-44 336.8 9.9 200 111-395 113-312 (312)
42 cd00814 MetRS_core catalytic c 100.0 1.9E-37 4.2E-42 323.5 9.2 211 112-395 99-319 (319)
43 KOG1247|consensus 100.0 2.7E-35 5.8E-40 293.6 10.9 341 111-531 161-519 (567)
44 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.2E-37 6.9E-42 327.8 -3.3 262 59-396 39-367 (391)
45 cd00812 LeuRS_core catalytic c 100.0 7.8E-33 1.7E-37 287.7 5.8 185 112-370 101-302 (314)
46 PTZ00399 cysteinyl-tRNA-synthe 99.9 5.8E-23 1.3E-27 230.1 19.2 168 294-482 267-437 (651)
47 PF08264 Anticodon_1: Anticodo 99.9 5.9E-23 1.3E-27 191.8 14.7 149 439-589 1-151 (153)
48 cd07961 Anticodon_Ia_Ile_ABEc 99.9 4.1E-22 8.9E-27 191.7 18.5 174 400-573 3-183 (183)
49 cd07960 Anticodon_Ia_Ile_BEm A 99.8 6.5E-20 1.4E-24 175.9 19.4 168 400-569 3-176 (180)
50 PRK00260 cysS cysteinyl-tRNA s 99.8 1.8E-20 3.9E-25 204.5 14.6 155 295-482 220-375 (463)
51 PRK12418 cysteinyl-tRNA synthe 99.7 1.8E-17 4E-22 173.7 13.3 147 295-481 214-362 (384)
52 TIGR03447 mycothiol_MshC cyste 99.7 4.3E-17 9.4E-22 171.6 12.8 142 295-475 241-384 (411)
53 TIGR00435 cysS cysteinyl-tRNA 99.7 1.9E-16 4.1E-21 172.5 10.5 154 295-475 219-373 (465)
54 PF13603 tRNA-synt_1_2: Leucyl 99.6 1.9E-16 4.2E-21 148.9 4.9 92 22-122 81-185 (185)
55 cd00672 CysRS_core catalytic c 99.6 3.4E-16 7.3E-21 152.6 4.1 75 294-370 127-201 (213)
56 cd07959 Anticodon_Ia_Leu_AEc A 99.6 1.4E-14 3E-19 128.6 13.5 116 398-530 1-117 (117)
57 PRK14535 cysS cysteinyl-tRNA s 99.6 3.4E-15 7.3E-20 163.6 10.0 147 295-476 446-610 (699)
58 COG0215 CysS Cysteinyl-tRNA sy 99.6 4.5E-15 9.7E-20 155.9 10.4 148 295-476 221-371 (464)
59 PLN02946 cysteine-tRNA ligase 99.6 9.2E-15 2E-19 159.5 10.4 165 295-482 277-443 (557)
60 cd07957 Anticodon_Ia_Met Antic 99.5 8.6E-14 1.9E-18 125.8 13.0 95 435-530 34-129 (129)
61 cd07962 Anticodon_Ia_Val Antic 99.5 2.1E-13 4.6E-18 124.2 14.6 130 400-530 3-135 (135)
62 PRK14536 cysS cysteinyl-tRNA s 99.5 6.6E-14 1.4E-18 151.3 11.4 161 296-475 234-401 (490)
63 KOG2007|consensus 99.5 1.1E-13 2.5E-18 143.1 9.9 166 295-485 258-428 (586)
64 cd07958 Anticodon_Ia_Leu_BEm A 99.5 8.5E-13 1.8E-17 117.0 12.7 117 398-530 1-117 (117)
65 PRK14534 cysS cysteinyl-tRNA s 99.4 8.6E-13 1.9E-17 142.0 11.1 159 295-475 233-394 (481)
66 PRK01611 argS arginyl-tRNA syn 99.4 2.6E-12 5.7E-17 142.6 14.3 197 296-517 274-501 (507)
67 PF01406 tRNA-synt_1e: tRNA sy 99.3 6.5E-13 1.4E-17 133.0 3.5 93 295-407 206-299 (300)
68 cd00674 LysRS_core_class_I cat 99.2 1.5E-11 3.2E-16 128.2 5.7 102 295-413 227-332 (353)
69 PRK00750 lysK lysyl-tRNA synth 99.1 3.6E-11 7.9E-16 132.5 5.8 86 295-396 234-320 (510)
70 TIGR00456 argS arginyl-tRNA sy 99.1 6.7E-10 1.5E-14 124.9 14.2 194 298-516 331-559 (566)
71 cd07375 Anticodon_Ia_like Anti 99.0 5.5E-09 1.2E-13 92.2 12.1 115 401-519 2-117 (117)
72 TIGR00467 lysS_arch lysyl-tRNA 98.4 1.8E-07 3.9E-12 102.6 5.3 85 295-396 225-313 (515)
73 PRK12451 arginyl-tRNA syntheta 98.3 4.1E-06 9E-11 94.1 12.5 194 298-516 328-555 (562)
74 PLN02286 arginine-tRNA ligase 98.1 3.5E-05 7.6E-10 86.8 14.6 199 297-517 330-570 (576)
75 COG0018 ArgS Arginyl-tRNA synt 97.9 7.1E-05 1.5E-09 83.4 12.1 197 294-517 332-571 (577)
76 PF01921 tRNA-synt_1f: tRNA sy 97.6 3.4E-05 7.4E-10 80.0 2.9 73 295-370 234-309 (360)
77 COG1384 LysS Lysyl-tRNA synthe 97.4 0.0017 3.6E-08 69.7 12.4 74 295-370 229-304 (521)
78 PLN02563 aminoacyl-tRNA ligase 96.9 0.00091 2E-08 79.3 4.6 77 112-190 212-302 (963)
79 TIGR00396 leuS_bact leucyl-tRN 96.8 0.00096 2.1E-08 78.7 4.0 79 112-191 130-223 (842)
80 PF00750 tRNA-synt_1d: tRNA sy 96.6 0.0005 1.1E-08 73.0 -0.4 86 294-396 236-353 (354)
81 COG0495 LeuS Leucyl-tRNA synth 96.5 0.0023 4.9E-08 73.6 4.3 77 114-191 137-228 (814)
82 cd00802 class_I_aaRS_core cata 96.3 0.006 1.3E-07 55.9 5.0 49 296-347 94-143 (143)
83 PRK13354 tyrosyl-tRNA syntheta 96.0 0.0069 1.5E-07 65.3 4.7 58 294-355 185-243 (410)
84 PRK00390 leuS leucyl-tRNA synt 96.0 0.0069 1.5E-07 71.4 4.8 86 111-197 132-231 (805)
85 PF00579 tRNA-synt_1b: tRNA sy 96.0 0.011 2.3E-07 61.3 5.7 62 294-355 148-212 (292)
86 cd00805 TyrRS_core catalytic c 95.7 0.014 3E-07 59.5 5.3 68 295-370 151-219 (269)
87 PRK12556 tryptophanyl-tRNA syn 95.7 0.012 2.6E-07 61.6 4.8 62 293-355 147-215 (332)
88 PRK05912 tyrosyl-tRNA syntheta 95.7 0.009 2E-07 64.5 4.0 70 294-370 187-257 (408)
89 cd00395 Tyr_Trp_RS_core cataly 95.6 0.02 4.4E-07 58.4 5.7 71 294-370 152-223 (273)
90 KOG0435|consensus 95.1 0.0061 1.3E-07 66.8 0.3 75 114-190 160-249 (876)
91 TIGR00233 trpS tryptophanyl-tR 94.9 0.021 4.5E-07 59.9 3.5 60 294-355 138-206 (328)
92 PRK08560 tyrosyl-tRNA syntheta 94.7 0.035 7.7E-07 58.3 4.5 58 294-355 167-228 (329)
93 PTZ00126 tyrosyl-tRNA syntheta 94.2 0.061 1.3E-06 57.4 5.0 60 293-355 208-271 (383)
94 PRK12282 tryptophanyl-tRNA syn 94.0 0.057 1.2E-06 56.6 4.3 62 293-355 140-209 (333)
95 PRK12284 tryptophanyl-tRNA syn 94.0 0.057 1.2E-06 57.9 4.3 70 294-370 147-224 (431)
96 PRK12285 tryptophanyl-tRNA syn 93.8 0.052 1.1E-06 57.7 3.5 58 294-355 202-265 (368)
97 cd00806 TrpRS_core catalytic c 93.6 0.084 1.8E-06 54.1 4.5 62 294-355 136-205 (280)
98 COG0180 TrpS Tryptophanyl-tRNA 93.6 0.075 1.6E-06 54.6 4.1 62 294-355 144-212 (314)
99 TIGR00234 tyrS tyrosyl-tRNA sy 92.3 0.18 3.9E-06 54.0 5.0 58 295-356 177-235 (377)
100 PRK12283 tryptophanyl-tRNA syn 92.2 0.18 3.9E-06 53.6 4.7 25 331-355 253-277 (398)
101 COG0162 TyrS Tyrosyl-tRNA synt 92.0 0.13 2.9E-06 54.8 3.5 52 295-350 180-232 (401)
102 cd00418 GlxRS_core catalytic c 91.6 0.16 3.5E-06 50.1 3.4 69 296-370 110-180 (230)
103 PRK00927 tryptophanyl-tRNA syn 91.0 0.2 4.2E-06 52.8 3.5 61 294-355 137-209 (333)
104 cd00808 GluRS_core catalytic c 90.7 0.25 5.4E-06 49.2 3.7 70 295-370 118-189 (239)
105 COG0525 ValS Valyl-tRNA synthe 90.0 1.7 3.6E-05 50.8 10.0 54 595-651 716-769 (877)
106 cd00671 ArgRS_core catalytic c 89.5 0.58 1.3E-05 45.9 5.2 49 298-348 162-212 (212)
107 PTZ00348 tyrosyl-tRNA syntheta 86.9 0.76 1.6E-05 52.6 4.7 58 294-355 174-236 (682)
108 PLN02486 aminoacyl-tRNA ligase 83.2 1.2 2.7E-05 47.5 4.0 54 298-355 222-279 (383)
109 PRK04156 gltX glutamyl-tRNA sy 76.1 2.8 6.2E-05 47.0 4.1 83 295-396 288-394 (567)
110 PLN02886 aminoacyl-tRNA ligase 72.5 4.5 9.8E-05 43.2 4.3 25 294-318 183-208 (389)
111 TIGR00464 gltX_bact glutamyl-t 71.3 3.7 8.1E-05 45.4 3.5 70 295-370 197-268 (470)
112 COG0008 GlnS Glutamyl- and glu 71.0 4.5 9.8E-05 44.4 4.1 65 300-370 211-277 (472)
113 PRK05710 glutamyl-Q tRNA(Asp) 70.3 4.5 9.8E-05 41.7 3.7 65 297-370 194-259 (299)
114 PRK01406 gltX glutamyl-tRNA sy 67.6 4.9 0.00011 44.5 3.5 69 296-370 208-278 (476)
115 PF10458 Val_tRNA-synt_C: Valy 67.1 5.1 0.00011 31.1 2.6 22 637-658 1-22 (66)
116 TIGR03838 queuosine_YadB gluta 66.6 5.6 0.00012 40.5 3.4 49 297-349 187-236 (272)
117 PRK12410 glutamylglutaminyl-tR 62.5 8.3 0.00018 41.9 3.9 68 298-370 193-262 (433)
118 PRK14895 gltX glutamyl-tRNA sy 61.9 11 0.00024 41.8 4.9 70 295-370 196-267 (513)
119 PF00749 tRNA-synt_1c: tRNA sy 59.4 14 0.00031 38.5 5.0 50 296-349 200-250 (314)
120 cd07956 Anticodon_Ia_Arg Antic 54.9 1.7E+02 0.0037 26.8 12.7 76 437-515 71-148 (156)
121 PF05746 DALR_1: DALR anticodo 54.6 97 0.0021 26.7 8.9 78 436-516 32-112 (119)
122 PRK12558 glutamyl-tRNA synthet 54.0 8.4 0.00018 42.1 2.2 68 297-370 198-267 (445)
123 KOG2623|consensus 53.5 14 0.0003 38.9 3.6 55 294-354 226-285 (467)
124 PLN02627 glutamyl-tRNA synthet 52.9 11 0.00024 42.0 3.0 68 297-370 251-320 (535)
125 cd00807 GlnRS_core catalytic c 42.4 77 0.0017 31.6 6.7 46 298-348 124-170 (238)
126 cd09287 GluRS_non_core catalyt 38.8 65 0.0014 32.1 5.6 45 299-348 127-172 (240)
127 KOG2144|consensus 34.2 27 0.00058 35.3 2.1 53 293-349 175-229 (360)
128 PLN02517 phosphatidylcholine-s 29.0 33 0.00072 38.6 1.9 71 115-190 159-232 (642)
129 COG0060 IleS Isoleucyl-tRNA sy 26.2 86 0.0019 37.6 4.7 46 112-160 165-218 (933)
130 TIGR03044 PS_II_psb27 photosys 25.8 2.6E+02 0.0057 25.0 6.5 88 564-658 37-134 (135)
131 PF04918 DltD_M: DltD central 23.5 32 0.0007 32.1 0.5 11 437-447 67-77 (163)
132 KOG3361|consensus 22.7 43 0.00092 29.6 1.1 19 51-70 47-65 (157)
133 PTZ00402 glutamyl-tRNA synthet 22.1 1.4E+02 0.003 34.1 5.2 55 310-370 261-331 (601)
134 PF09190 DALR_2: DALR domain; 21.5 2.9E+02 0.0062 20.9 5.4 26 453-478 2-28 (63)
135 COG1734 DksA DnaK suppressor p 21.2 38 0.00083 29.8 0.5 14 135-148 78-91 (120)
136 PLN00064 photosystem II protei 20.8 3.2E+02 0.0069 25.2 6.2 88 564-658 66-164 (166)
137 KOG2916|consensus 20.6 4E+02 0.0087 26.8 7.3 51 477-532 79-132 (304)
138 KOG2369|consensus 20.4 67 0.0014 35.0 2.2 76 115-194 127-205 (473)
No 1
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.4e-129 Score=1143.73 Aligned_cols=640 Identities=56% Similarity=0.953 Sum_probs=561.9
Q ss_pred cchHHHHhhc-------------CCceEEEEeeecCCccCCccccCccccccc-CceeEEEeCCCcCCCCCCceeecCCC
Q psy1860 2 QSRLETLFKK-------------EEEYEILDSFQGSTLKGLQYQPLFPYFKHV-TSAFRVLTDTYVTEESGTGVVHQAPY 67 (659)
Q Consensus 2 ~~~~~~~~~~-------------~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~-~~~~pi~~~~~V~~~~GTG~V~~~Pa 67 (659)
++|++.+++. .++++|+++++|++|+|++|.|||+++... ++.+||++++||++++|||+||+|||
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPa 339 (1159)
T PLN02882 260 ESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPA 339 (1159)
T ss_pred HHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCC
Confidence 4577777642 246999999999999999999998754321 35799999999999999999999999
Q ss_pred CChhhHHHHHhCCCCCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcE
Q psy1860 68 FGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPL 147 (659)
Q Consensus 68 h~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v 147 (659)
||++||++|++|||+.+.++++++||++|+|++.+++|+|+.++||++.|++.|+++|.+++.++++|+||||||||+|+
T Consensus 340 hG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpl 419 (1159)
T PLN02882 340 FGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPL 419 (1159)
T ss_pred CChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEE
Confidence 99999999999999777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHH
Q psy1860 148 IYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAEL 227 (659)
Q Consensus 148 ~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~ 227 (659)
|+++++||||+++++|+++++.+++++|+|++.+++++.+||++++||||||||+||||||+|+|+++++++++.+++++
T Consensus 420 i~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el 499 (1159)
T PLN02882 420 IYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAEL 499 (1159)
T ss_pred EEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHH
Confidence 99999999999999999999999999999999866899999999999999999999999999999988889999999999
Q ss_pred HHhhCCccccccccccccccccCCCCC-CCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccc
Q psy1860 228 HRLSGISVEKDLHRESVDSVTIPSVRP-GKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQT 306 (659)
Q Consensus 228 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~ 306 (659)
.+..+..+. |+|++++|++++|+.|+ +.+.++|++||||||||||++|+++++||+++++.|..+||+|++++|+||+
T Consensus 500 ~~~~~~~~~-dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~ 578 (1159)
T PLN02882 500 EKLSGVKVT-DLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQT 578 (1159)
T ss_pred HHHhCCchh-hccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchh
Confidence 998887766 99999999999998542 1247999999999999999999999999988888899999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCc
Q psy1860 307 RGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPM 386 (659)
Q Consensus 307 ~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~ 386 (659)
||||++++++++++++.+||++|++||||++++|+|||||+||+|+|.+++++| |||+||||+ +++.
T Consensus 579 RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~Y-GADaLR~~L---------l~s~--- 645 (1159)
T PLN02882 579 RGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKY-GADALRLYL---------INSP--- 645 (1159)
T ss_pred hhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHh-CcHHHHHHH---------HhCC---
Confidence 999999999999999999999999999999999999999999999999999999 999999999 6541
Q ss_pred cccCcccccccCchhhhHHHHHHHHHHH-----HHhccchh----hcccccccc--c-CCCChhhHHHHHHHHHHHHHHH
Q psy1860 387 EVRGRLCPVHVWEPVHVWSVCLILKEKV-----LLANDAEE----KLSFQYNEA--E-GSTNIMDAWIISFSESLIEFVR 454 (659)
Q Consensus 387 ~~~~~d~~f~lw~~~~~~~~~~~~~~l~-----~l~n~~~~----~~~~~~~~~--~-~~~~~~d~~il~~l~~~~~~~~ 454 (659)
...++|.+|+ .+...+..++++++++ ++.|.... ...|.+... . ...+.+|+|++++++++++.++
T Consensus 646 ~~~~~d~~fs--~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~ 723 (1159)
T PLN02882 646 VVRAEPLRFK--EEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVR 723 (1159)
T ss_pred cccCcCcccC--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 2246889998 3333334456666663 23332110 011222110 0 1236789999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhc
Q psy1860 455 KEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLT 534 (659)
Q Consensus 455 ~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~ 534 (659)
++|++|+|++|++.+++|++++||||++.+|+|++.+.+..+++++++++++++..+++||+|||||+||+||++|+...
T Consensus 724 ~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~ 803 (1159)
T PLN02882 724 EEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVL 803 (1159)
T ss_pred HHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcccc
Confidence 99999999999999999997799999999999998765556678899999999999999999999999999999997422
Q ss_pred CCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHH-HHHHHHHHhH
Q psy1860 535 GRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEI-RTLESYILQE 613 (659)
Q Consensus 535 ~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l-~~l~~~I~~l 613 (659)
....+|||++.||.+.+.++|+++|..++.++++++.+|++|++.++++++|++..++...+.+..+.+ +.++++|+.+
T Consensus 804 ~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e 883 (1159)
T PLN02882 804 PGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERHNKPLKTPLKEMVVVHPDAEFLDDITGKLKEYVLEE 883 (1159)
T ss_pred CCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceeeEecCCHHHHHHHHHHHHHHHHHh
Confidence 223579999999999888889999999999999999999999999999999999776666565555455 6889999999
Q ss_pred hCcccEEEEeCCceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 614 LNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 614 ~nv~~v~~~~~~~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
+|++++.+.++..++ +.+.+.+|++.+|+||+|.++++.++|++
T Consensus 884 ~nv~~v~~~~~~~~~-~~~~~~pn~~~lG~~~~~~~~~v~~~i~~ 927 (1159)
T PLN02882 884 LNVRSLVPCNDPLKY-ASLRAEPNFSVLGKRLGKSMGLVAKEVKA 927 (1159)
T ss_pred hCcceEEEeecccce-EEEEEeeCchHhchhhhhhHHHHHHHHHh
Confidence 999999987665554 68899999999999999999999999985
No 2
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1e-128 Score=1132.84 Aligned_cols=639 Identities=47% Similarity=0.856 Sum_probs=556.5
Q ss_pred cchHHHHhhc----CCceEEEEeeecCCccCCccccCcccccc----cCceeEEEeCCCcCCCCCCceeecCCCCChhhH
Q psy1860 2 QSRLETLFKK----EEEYEILDSFQGSTLKGLQYQPLFPYFKH----VTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDY 73 (659)
Q Consensus 2 ~~~~~~~~~~----~~~~~~~~~~~G~~l~g~~~~~p~~~~~~----~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~ 73 (659)
++|++.+++. .++++|+++++|++|+|.+|.|||+++.. .++.+|||+++||++++|||+||+|||||++||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy 448 (1205)
T PTZ00427 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDF 448 (1205)
T ss_pred hHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHH
Confidence 5678888763 24799999999999999999999976431 145899999999999999999999999999999
Q ss_pred HHHHhCCCCCC-CCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEccc
Q psy1860 74 RVCLAGGVITR-DQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAV 152 (659)
Q Consensus 74 ~~~~~~~l~~~-~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~ 152 (659)
++|++|||+.. ..++++++|++|+|++.+++|.|+.++|||+.|++.|+++|++++.++++|+||||||||+|+|++++
T Consensus 449 ~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~ 528 (1205)
T PTZ00427 449 RVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAI 528 (1205)
T ss_pred HHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEec
Confidence 99999999421 11368899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeechHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhC
Q psy1860 153 PSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSG 232 (659)
Q Consensus 153 ~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~ 232 (659)
+||||+++++++++++.+++++|+|++.+++++.+||++++||||||||+||||||+|+|++++.++++++++++.+.++
T Consensus 529 ~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~ 608 (1205)
T PTZ00427 529 PAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSG 608 (1205)
T ss_pred ceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhc
Confidence 99999999999999999999999999986689999999999999999999999999999998888888999999888887
Q ss_pred CccccccccccccccccCCCCC-CCCCccccccccceeccCCCCccccccCCCC-CcccccccCCcceEeeccccchhHH
Q psy1860 233 ISVEKDLHRESVDSVTIPSVRP-GKPPLRRVPEVFDCWFESGSMPYAQLHFPFD-NRRDFDDRFPADFIAEGIDQTRGWF 310 (659)
Q Consensus 233 ~~~~~~~~~~~~d~~~~~~~~~-g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~-~~~~~~~~~p~d~~~~G~D~~~~w~ 310 (659)
..+..++|++++|.++++|++. +.+.++|++||||||||||++|+++++||++ ++++|+++||+|++++|.||+||||
T Consensus 609 ~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf 688 (1205)
T PTZ00427 609 VKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWF 688 (1205)
T ss_pred cccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHH
Confidence 6555589999999988776541 1246999999999999999999999999975 5778999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccC
Q psy1860 311 YTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRG 390 (659)
Q Consensus 311 ~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~ 390 (659)
+++++++++++++.||++|++||||+|++|+|||||+||||||.+++++| |||+||||+ ++++. ..+
T Consensus 689 ~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kY-GADaLR~~L---------ls~~~---~~~ 755 (1205)
T PTZ00427 689 YTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKY-GADSLRLYL---------INSVA---VRA 755 (1205)
T ss_pred HHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhc-CCcHHHHHH---------HhcCC---CCC
Confidence 99999999999999999999999999999999999999999999999999 999999999 65522 237
Q ss_pred cccccccCchhhh-HHHHHHHHHHHH-----Hhccch--h--hcccccccc--cCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy1860 391 RLCPVHVWEPVHV-WSVCLILKEKVL-----LANDAE--E--KLSFQYNEA--EGSTNIMDAWIISFSESLIEFVRKEMA 458 (659)
Q Consensus 391 ~d~~f~lw~~~~~-~~~~~~~~~l~~-----l~n~~~--~--~~~~~~~~~--~~~~~~~d~~il~~l~~~~~~~~~~~e 458 (659)
+|.+|+ + +.+ +.++++++++++ ++|+.. . ...|.+... ......+|+||+++++++++.++++|+
T Consensus 756 ~Dl~Fs--e-~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me 832 (1205)
T PTZ00427 756 ENLKFQ--E-KGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMK 832 (1205)
T ss_pred cccccC--H-HHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999 3 444 466777776633 333221 0 001211110 123467899999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcC---
Q psy1860 459 AYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTG--- 535 (659)
Q Consensus 459 ~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~--- 535 (659)
+|+|+.|++++++|+.++|+||++++|+|+|.+...+++..++++|+++|+.+++||||||||+||+||++|+....
T Consensus 833 ~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~ 912 (1205)
T PTZ00427 833 AYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNE 912 (1205)
T ss_pred ccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhcccccc
Confidence 99999999999999988999999999999997644455678999999999999999999999999999999964210
Q ss_pred ------------------CCCCCceeccCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCC
Q psy1860 536 ------------------RLERSIHFIMMPQPNRGI-IDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHND 596 (659)
Q Consensus 536 ------------------~~~~sv~~~~~P~~~~~~-~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d 596 (659)
...+|||++.||.+++.+ +|++++..|+.++.+++.+|++|++.+++.++|+...++...+
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r~pl~~~~v~~~~ 992 (1205)
T PTZ00427 913 HNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASKKPLKSITILHPN 992 (1205)
T ss_pred ccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceeEEecCc
Confidence 013599999999998876 7999999999999999999999999999999999876555556
Q ss_pred HHHHHHHHHHHHHHHhHhCcccEEEEeCCceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 597 AQCLQEIRTLESYILQELNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 597 ~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
+...+.++.+.++|+.++|+.++.+.++... +.+++.+|++.+|+||++.++++.+++++
T Consensus 993 ~~~~~~~~~~~~~i~~e~nv~~v~~~~~~~~--~~~~~~pn~~~lG~~~g~~~~~v~~~i~~ 1052 (1205)
T PTZ00427 993 ESYFKNFDQISNYIKEELNVLNVECSNDTSC--LDFSAIPNYKTLGVKLGYNLKKVQNKIKN 1052 (1205)
T ss_pred HHHHHHHHHHHHHHHHhhCcceEEEEecCce--EEEEEEechhHhChhhhhhHHHHHHHHHc
Confidence 6667778899999999999999998766442 67899999999999999999999999875
No 3
>KOG0434|consensus
Probab=100.00 E-value=3.6e-128 Score=1003.17 Aligned_cols=637 Identities=59% Similarity=1.048 Sum_probs=599.2
Q ss_pred CcchHHHHhhc--CCceEEEEeeecCCccCCccccCccccccc--CceeEEEeCCCcCCCCCCceeecCCCCChhhHHHH
Q psy1860 1 MQSRLETLFKK--EEEYEILDSFQGSTLKGLQYQPLFPYFKHV--TSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVC 76 (659)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~--~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~ 76 (659)
|++||..|.+. ..+++|++.|+|++|+|++|.|||+++... ++...|++++||+.+.|||+||+|||+|+.||.+|
T Consensus 258 ~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c 337 (1070)
T KOG0434|consen 258 MESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRAC 337 (1070)
T ss_pred eHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHH
Confidence 68999999884 568999999999999999999999998764 46899999999999999999999999999999999
Q ss_pred HhCCCCCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCcee
Q psy1860 77 LAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWF 156 (659)
Q Consensus 77 ~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwF 156 (659)
..+|++.++.-+.||||++|+|+..+.+|+|.+|+||.+.||+.|++.|.+++...+.|+||+||||.+|++||+.++||
T Consensus 338 ~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWF 417 (1070)
T KOG0434|consen 338 VANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWF 417 (1070)
T ss_pred HHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhh
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccc
Q psy1860 157 IRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVE 236 (659)
Q Consensus 157 i~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 236 (659)
+++..+.+++++.+.+..|+|+..+.+||.|||++.+||+|||+|+||||||+|+.+|.++++++++++++.+++|....
T Consensus 418 VrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kIt 497 (1070)
T KOG0434|consen 418 VRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKIT 497 (1070)
T ss_pred hhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHH
Q psy1860 237 KDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVI 316 (659)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~ 316 (659)
|+|++.+|.+++|+++ |.+.++|.++|||+||+||++|++..+||++|+++|+.-+|+|++.+|.||.||||+..+..
T Consensus 498 -DlHRe~iD~itIps~~-gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~Vl 575 (1070)
T KOG0434|consen 498 -DLHRESIDHITIPSKK-GKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVL 575 (1070)
T ss_pred -hhhhhhcCceecccCC-CCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHH
Confidence 9999999999999976 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccc
Q psy1860 317 STALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVH 396 (659)
Q Consensus 317 ~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~ 396 (659)
++++|+++|||+|+++|+|+.++|+|||||+.|+.||..++++| |||+||+|| +++ | +..++.++|+
T Consensus 576 sT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkY-GADalRlYL---------InS--P-VvraE~LkFk 642 (1070)
T KOG0434|consen 576 STALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKY-GADALRLYL---------INS--P-VVRAENLKFK 642 (1070)
T ss_pred HHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhh-cchheeeee---------ecC--c-cccccccccc
Confidence 99999999999999999999999999999999999999999999 999999999 887 6 7789999999
Q ss_pred cCchhhhHHHHHHHHHH---------HHHhccch----hhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchh
Q psy1860 397 VWEPVHVWSVCLILKEK---------VLLANDAE----EKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLY 463 (659)
Q Consensus 397 lw~~~~~~~~~~~~~~l---------~~l~n~~~----~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~ 463 (659)
+ +++++.++++ |+++|... .+..|.+.....+.+.+|+||++..++++..+++.|++|++.
T Consensus 643 --e----eGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLy 716 (1070)
T KOG0434|consen 643 --E----EGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLY 716 (1070)
T ss_pred --h----hhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehh
Confidence 7 7888888876 44555321 122344433344667899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcC-----CCC
Q psy1860 464 TVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTG-----RLE 538 (659)
Q Consensus 464 ~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~-----~~~ 538 (659)
+++..+..|++++.|||+++.+.|+++++...+|..|+.+|.++|-+++++|+||.||+||.+||+|..... ...
T Consensus 717 tVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~ 796 (1070)
T KOG0434|consen 717 TVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSE 796 (1070)
T ss_pred hhHHHHHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCcc
Confidence 999999999999999999999999999888888999999999999999999999999999999999976543 456
Q ss_pred CCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCccc
Q psy1860 539 RSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRT 618 (659)
Q Consensus 539 ~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~ 618 (659)
.|||...+|.+.++.+++.+|..++.++.+|...|.+|.+++|+.++||...+++..|++..+.+..++.+|..++||++
T Consensus 797 ~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRern~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~ 876 (1070)
T KOG0434|consen 797 RSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRERNTISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVRE 876 (1070)
T ss_pred ceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHHhhccCCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhccee
Confidence 79999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred EEEEeCCceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 619 VTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 619 v~~~~~~~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
+.+..+..+.++.+++++|+..+|+||++.++++.++++.
T Consensus 877 v~~~~d~~kyg~~lkaepd~~vLGkklk~~~kkv~~~l~~ 916 (1070)
T KOG0434|consen 877 VVFTSDEEKYGVVLKAEPDFPVLGKKLKKDMKKVKKALKQ 916 (1070)
T ss_pred eeecccchhcceEEEecCCcHHHhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999874
No 4
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-125 Score=1040.31 Aligned_cols=592 Identities=25% Similarity=0.419 Sum_probs=512.1
Q ss_pred ceEEEEeeecCCccCCccc--cC--------ccccccc---CceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCC
Q psy1860 14 EYEILDSFQGSTLKGLQYQ--PL--------FPYFKHV---TSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGG 80 (659)
Q Consensus 14 ~~~~~~~~~G~~l~g~~~~--~p--------~~~~~~~---~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 80 (659)
++-+|+|...+.|.|.++. || +++.+.. ++.+||++|+||+++||||+||+|||||++||+++++|+
T Consensus 208 ~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~ 287 (877)
T COG0525 208 GYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHN 287 (877)
T ss_pred ceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCC
Confidence 3556677666655555432 33 2221111 568999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCccccCCCc-cccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeec
Q psy1860 81 VITRDQEIVCPVDASGCFTAPVS-HFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRV 159 (659)
Q Consensus 81 l~~~~~~~~~~vd~~G~~~~~~~-~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~ 159 (659)
| |+++++|++|+++++++ +|+||++++||++|+++|++.|++.+.+++.|++|||+|||+|||+++++|||+++
T Consensus 288 L-----p~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~ 362 (877)
T COG0525 288 L-----PLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKV 362 (877)
T ss_pred C-----CceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEh
Confidence 9 89999999999997774 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHhcC--CceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCcccc
Q psy1860 160 QHMNQDLLKCNS--DTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK 237 (659)
Q Consensus 160 ~~~k~~~~~~~~--~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 237 (659)
..+++.++++.+ +++|+|+++ ++++.+|+++++|||||||||||||||+|||.+|+++++....++....
T Consensus 363 ~~la~~~l~~~~~g~i~f~P~~~-~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~------- 434 (877)
T COG0525 363 LELAKKALEAVKDGKIKFVPERM-EKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAA------- 434 (877)
T ss_pred HhhHHHHHHHHhcCCceEecHHH-HHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCccccchhh-------
Confidence 999999999988 899999998 6899999999999999999999999999999888887764321110000
Q ss_pred ccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHH
Q psy1860 238 DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVIS 317 (659)
Q Consensus 238 ~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~ 317 (659)
...|+. ..+++|+|||||||||++||++++|||.+ +++|+.+||+|++++|.||||||+++|+|++
T Consensus 435 ------------~~~~~~-~~~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fyPt~llvtG~DIIffWvarmi~~~ 500 (877)
T COG0525 435 ------------AEKCPK-EELEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFYPTDLLVTGHDIIFFWVARMIMRG 500 (877)
T ss_pred ------------hccCch-hcccCCcchhhhhhhcccccccccCCCCc-chHHHhcCCCccccccchhhHHHHHHHHHHH
Confidence 011212 56899999999999999999999999965 7789999999999999999999999999999
Q ss_pred hhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCccccccc
Q psy1860 318 TALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHV 397 (659)
Q Consensus 318 ~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~l 397 (659)
+.++++.||+.|++||+|+|++|+|||||+||||||.++|++| ||||||||+ ++.+.+ |+|++|+
T Consensus 501 ~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~y-GaDAlRf~l---------a~~~~~----G~Di~~~- 565 (877)
T COG0525 501 LHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKY-GADALRFTL---------ASLASP----GRDINFD- 565 (877)
T ss_pred HHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHh-ChHHHHHHH---------HhccCC----CcccCcC-
Confidence 9999999999999999999999999999999999999999999 999999999 776555 9999999
Q ss_pred CchhhhHHHHHHHHHHHHHhccchhh-ccccccccc-CCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-H
Q psy1860 398 WEPVHVWSVCLILKEKVLLANDAEEK-LSFQYNEAE-GSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-D 474 (659)
Q Consensus 398 w~~~~~~~~~~~~~~l~~l~n~~~~~-~~~~~~~~~-~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~ 474 (659)
...+++.++|+||+|+..++.... .+..+.... ...+..|+||+++++++++.++++|++|+|..|.+++++|+ +
T Consensus 566 --~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~ 643 (877)
T COG0525 566 --EKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWN 643 (877)
T ss_pred --HHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHH
Confidence 689999999999996554432211 111111111 22368999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCC
Q psy1860 475 NLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGII 554 (659)
Q Consensus 475 ~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~ 554 (659)
+||+||||++|++++.+ .....++..+|++++..+++||||||||+||+|||++.. .+|||.+.||.+.+..+
T Consensus 644 ~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~-----~~si~~~~~P~~~~~~~ 716 (877)
T COG0525 644 DFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPG-----TESIHLASWPEVDEELI 716 (877)
T ss_pred HHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCC-----CCeEEeccCCCcchhhc
Confidence 99999999999999987 445568899999999999999999999999999999963 37999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeCC---------
Q psy1860 555 DQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDK--------- 625 (659)
Q Consensus 555 d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~--------- 625 (659)
++.++..++.+.+++..+|++|++++++++.++...+. .. .+..+.++.....|..+.++.++.+.++.
T Consensus 717 d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~ 794 (877)
T COG0525 717 DEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLV-GS-EELEDRLEANEDDIKGLANLEELEILSPDPEEPPVEVT 794 (877)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEe-cc-HhHHHHHHHHHHHHHHhcCcceeeecccCccccchhHH
Confidence 99999999999999999999999999999999986543 33 55667788888899999999988887521
Q ss_pred -----ceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 626 -----QKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 626 -----~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
..+.+++.+.+|..++.+||+|+++|+++++++
T Consensus 795 ~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~ 832 (877)
T COG0525 795 AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDR 832 (877)
T ss_pred hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHH
Confidence 234578888999999999999999999999874
No 5
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-125 Score=1058.18 Aligned_cols=517 Identities=40% Similarity=0.715 Sum_probs=460.6
Q ss_pred cchHHHHhhcC--CceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhC
Q psy1860 2 QSRLETLFKKE--EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAG 79 (659)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 79 (659)
++|++++++.. .+++|+++++|++|+|.+|.|||.++ ...+.+||+.++||+.+.|||+||+|||||++||.+|+++
T Consensus 268 ~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~-~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~ 346 (933)
T COG0060 268 KALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDF-VYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKY 346 (933)
T ss_pred HHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccc-cccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHc
Confidence 57888988842 23899999999999999999999865 3356899999999999999999999999999999999999
Q ss_pred C-CCCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeee
Q psy1860 80 G-VITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIR 158 (659)
Q Consensus 80 ~-l~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~ 158 (659)
| + ++.+|||++|+|++++++|.|+.|++|++.||+.|+++|.|++.+.++|+|||||||++|+|||+++|||++
T Consensus 347 g~l-----~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~ 421 (933)
T COG0060 347 GLL-----EVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVS 421 (933)
T ss_pred CCc-----CCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeE
Confidence 9 7 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCC----c
Q psy1860 159 VQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGI----S 234 (659)
Q Consensus 159 ~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~----~ 234 (659)
++++|+++++.+++++|+|++. ++|+.+||++++||||||||+||+|||+|+|+++++++++ .+++.+..+. .
T Consensus 422 v~~~r~~~l~~i~~v~w~P~~~-~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~--~~El~e~~~~~~~~~ 498 (933)
T COG0060 422 VDKLRDKMLKEINKVNWVPDWG-KNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVI--TEELEELVGQLVEEK 498 (933)
T ss_pred HHHHHHHHHHHHhcceEEChhH-HHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeecc--HHHHHHHHHHHhhhc
Confidence 9999999999888999999998 7999999999999999999999999999999998887765 4444444433 3
Q ss_pred cccccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHH
Q psy1860 235 VEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLL 314 (659)
Q Consensus 235 ~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~l 314 (659)
+..++|++.+|.++.||..+|. .++|++||||||||||++|+++++ |+++ ..|..++ +|+|++|+||+||||++++
T Consensus 499 g~~~w~~~~idel~~~~~~~g~-~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~-aD~~lEGsDQ~RGWF~Ssl 574 (933)
T COG0060 499 GIDDWHRPDIDELLPPCPEDGK-EYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF-ADFYLEGSDQTRGWFYSSL 574 (933)
T ss_pred CchhhhccchHhhcCCCCCCcc-eeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc-CcEEEEeccccchhHHHHH
Confidence 3447799999999988743354 899999999999999999999997 6432 2233333 5999999999999999999
Q ss_pred HHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccc
Q psy1860 315 VISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCP 394 (659)
Q Consensus 315 l~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~ 394 (659)
+.++++++++|||+|++|||++|++|+|||||+||+|+|.+++++| |||+||||+ +++ ++ ++|.+
T Consensus 575 ~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~y-GADiLRLwv---------~ss-d~----~~dl~ 639 (933)
T COG0060 575 LTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKY-GADILRLWV---------ASS-DY----WEDLR 639 (933)
T ss_pred HHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhh-Cchheeeee---------eec-Cc----hhccc
Confidence 9999999999999999999999999999999999999999999999 999999999 766 35 99999
Q ss_pred cccCchhhhHHHHHHHHHH-----HHHhccchhhcccccccc---cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHH
Q psy1860 395 VHVWEPVHVWSVCLILKEK-----VLLANDAEEKLSFQYNEA---EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVV 466 (659)
Q Consensus 395 f~lw~~~~~~~~~~~~~~l-----~~l~n~~~~~~~~~~~~~---~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~ 466 (659)
|+ ++.++..++.++++ |+++|+.+ |++... ..++..+|+|+++++++++++++++|++|+|++++
T Consensus 640 ~s---~~il~~~~~~~r~irNt~rF~l~nl~~----fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~ 712 (933)
T COG0060 640 FS---DEILKQVREVYRKIRNTYRFLLGNLDD----FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVV 712 (933)
T ss_pred cC---HHHHHHHHHHHHHHHHHHHHHHHhccC----CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99 56688888888877 56777432 544432 23567889999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHccccccCC-CChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceec
Q psy1860 467 PRLVLFI-DNLTNWYVRMNRRRLKGE-GGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFI 544 (659)
Q Consensus 467 ~~l~~f~-~~~~~~Yle~~K~~l~~~-~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~ 544 (659)
+.+++|+ .++++|||+++|+|+|++ .++.++++++.+|++++..++++||||+||+||++|+.|+... ..+|||++
T Consensus 713 ~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~--~~eSVhl~ 790 (933)
T COG0060 713 RALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER--KEESVHLE 790 (933)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC--CCceeEec
Confidence 9999999 799999999999999998 6677889999999999999999999999999999999997421 16899999
Q ss_pred cCCCCCCCCCC
Q psy1860 545 MMPQPNRGIID 555 (659)
Q Consensus 545 ~~P~~~~~~~d 555 (659)
.||.+.....+
T Consensus 791 ~~p~~~~~~~~ 801 (933)
T COG0060 791 DWPEVDEELID 801 (933)
T ss_pred cCCcccccccc
Confidence 99998887664
No 6
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-119 Score=1056.85 Aligned_cols=591 Identities=45% Similarity=0.781 Sum_probs=520.9
Q ss_pred cchHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCC
Q psy1860 2 QSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGV 81 (659)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l 81 (659)
+++++.+++ ++++++.+++|++|+|++|.|||..+....+.+||++++||++++|||+||+|||||++||++|++|||
T Consensus 260 ~~~~~~~~~--~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l 337 (975)
T PRK06039 260 EALLEKVLK--EDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGL 337 (975)
T ss_pred HHHHHHHhh--cccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCC
Confidence 467777776 578999999999999999999997432212479999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechH
Q psy1860 82 ITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQH 161 (659)
Q Consensus 82 ~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~ 161 (659)
++++++|++|+|++.+|+|+|+.++||+++|++.|+++|++++.++++|+||||||||+||++++++||||++++
T Consensus 338 -----~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~ 412 (975)
T PRK06039 338 -----PVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTK 412 (975)
T ss_pred -----CccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCcc-ccccc
Q psy1860 162 MNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISV-EKDLH 240 (659)
Q Consensus 162 ~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~ 240 (659)
+|+++++++++++|+|++.+++++.+||++++||||||||+||||||+|+|++|++++++++++++.+..|.+. ..++|
T Consensus 413 ~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~ 492 (975)
T PRK06039 413 IKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLH 492 (975)
T ss_pred HHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhc
Confidence 99999999999999999986339999999999999999999999999999999888888899999988877622 23789
Q ss_pred cccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhh
Q psy1860 241 RESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTAL 320 (659)
Q Consensus 241 ~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~ 320 (659)
++++|.+.++|++ | +.++|++||||||||||++|+++++||+++++.|++|||+|++++|+||+||||+++++.++++
T Consensus 493 ~~~~d~~~~~~~~-~-~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~ 570 (975)
T PRK06039 493 RPYVDEVTLPCPD-G-GTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTAL 570 (975)
T ss_pred ccccccccccCCC-C-cceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHh
Confidence 9999998877654 3 4799999999999999999999999997767779999999999999999999999999999999
Q ss_pred cCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCch
Q psy1860 321 FKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEP 400 (659)
Q Consensus 321 ~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~ 400 (659)
++..||++|++||+|++++|+|||||+||+|+|.+++++| |||++|||+ ++.+++ ++|.+|+ .+
T Consensus 571 ~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~y-GaDalR~~l---------ls~~~~----~~D~~fs--~~ 634 (975)
T PRK06039 571 FDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKY-GADALRWYL---------LSSSAP----WEDLRFS--ED 634 (975)
T ss_pred cCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHh-ChHHHHHHH---------HhCCCC----CCCceec--hh
Confidence 9999999999999999999999999999999999999999 999999999 777555 8999999 33
Q ss_pred hhhHHHHHHHHHHHHHhccch---hhccccccc---ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q psy1860 401 VHVWSVCLILKEKVLLANDAE---EKLSFQYNE---AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFID 474 (659)
Q Consensus 401 ~~~~~~~~~~~~l~~l~n~~~---~~~~~~~~~---~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~ 474 (659)
..++.+++++++++++.+... ....+.... .....+..|+|++++++.+++.++++|++|+|+.|++.+++|++
T Consensus 635 ~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~ 714 (975)
T PRK06039 635 GVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVD 714 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 337778888888754332211 001111110 02245678999999999999999999999999999999999998
Q ss_pred HHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCC
Q psy1860 475 NLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGII 554 (659)
Q Consensus 475 ~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~ 554 (659)
++|+||++.+|+++|.......+..++.+|++++..+++||+|||||+||+||+.|+.. ...+|||.+.||.+++.++
T Consensus 715 ~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~--~~~~sv~~~~~P~~~~~~~ 792 (975)
T PRK06039 715 DLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE--DAPESVHLADWPEVDESLI 792 (975)
T ss_pred HHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc--CCCCeeEecCCCCCccccC
Confidence 99999999999999876544445678899999999999999999999999999999631 1357999999999998889
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEE
Q psy1860 555 DQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVT 620 (659)
Q Consensus 555 d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~ 620 (659)
|++++..++.++++++.+|++|++.+++.++|+...++...++ ..+.++.+.++|+.++|+.++.
T Consensus 793 d~~le~~~~~~~~ii~~~r~~r~~~~i~~~~pl~~~~v~~~~~-~~~~~~~~~~~i~~~~nv~~v~ 857 (975)
T PRK06039 793 DEELEEAMDLVREIVSLGRSARKKAGIKVRQPLSKITVAEDEE-VAEALERYEDLIKDELNVKEVP 857 (975)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceEEEecCHH-HHHHHHHHHHHHHHHhCcccch
Confidence 9999999999999999999999999999999998765544333 5667888899999999998764
No 7
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.3e-116 Score=1030.73 Aligned_cols=615 Identities=20% Similarity=0.310 Sum_probs=508.9
Q ss_pred chHHHHhhcCCceEEE-EeeecCCccCCccccCcccccccCceeEEEeCC-CcCCCCCCceeecCCCCChhhHHHHHhCC
Q psy1860 3 SRLETLFKKEEEYEIL-DSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDT-YVTEESGTGVVHQAPYFGEDDYRVCLAGG 80 (659)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 80 (659)
.|.+.++.. ..+.|. ....+++|+|++|.||+. ++.+|||+++ ||++++|||+||+|||||++||++|++||
T Consensus 327 tRpEti~g~-~avaV~P~d~ry~~L~G~~~~~Pl~-----~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~ 400 (1066)
T PLN02381 327 TRIETMLGD-TAIAIHPDDERYKHLHGKFAVHPFN-----GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHN 400 (1066)
T ss_pred CCHHHHhcc-cceeeCCCCcchhhhCCCEEECCCC-----CCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcC
Confidence 455665531 112222 234578999999999995 4689999864 99999999999999999999999999999
Q ss_pred CCCCCCccccccCCCccccCCCc-cccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeec
Q psy1860 81 VITRDQEIVCPVDASGCFTAPVS-HFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRV 159 (659)
Q Consensus 81 l~~~~~~~~~~vd~~G~~~~~~~-~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~ 159 (659)
| ++++++|++|+++++++ +|.|+++++||++|+++|++.|++++.++|+|+||||||||+|||+++++||||++
T Consensus 401 L-----~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~ 475 (1066)
T PLN02381 401 L-----EFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNC 475 (1066)
T ss_pred C-----CeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEc
Confidence 9 89999999999998864 89999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHhc-----CCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCC-
Q psy1860 160 QHMNQDLLKCN-----SDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGI- 233 (659)
Q Consensus 160 ~~~k~~~~~~~-----~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~- 233 (659)
+++++++++++ ++++|+|+++ ++++.+||++++|||||||||||||||+|||..++..+ ...|.
T Consensus 476 ~~l~~~al~av~~~~~~~i~~~P~~~-~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~---------~~~g~~ 545 (1066)
T PLN02381 476 SSMAKQALDAAIDGENKKLEFIPKQY-LAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQL---------KELGSY 545 (1066)
T ss_pred hHHHHHHHHHHhhccCCceEEEChHH-HHHHHHHHhcCccceeeeecccCCccceEEeccChhhc---------ccCCcc
Confidence 99999999987 7899999998 58999999999999999999999999999995111100 00000
Q ss_pred -ccccccccccccccccCC-CCCCCC-CccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHH
Q psy1860 234 -SVEKDLHRESVDSVTIPS-VRPGKP-PLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWF 310 (659)
Q Consensus 234 -~~~~~~~~~~~d~~~~~~-~~~g~~-~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~ 310 (659)
+.+ ..+++..+.+..++ .|+|.. .++|++||||||||||++|+++++||++ .++|++|||+|++++|.||+||||
T Consensus 546 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~-~~~~~~~~P~d~~~~G~Dii~~W~ 623 (1066)
T PLN02381 546 NDHW-VVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWV 623 (1066)
T ss_pred cceE-EEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCC-HHHHhccCCCeeeeecchhhhhHH
Confidence 000 00111111111111 233432 5899999999999999999999999964 567999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC--------------------------------
Q psy1860 311 YTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-------------------------------- 358 (659)
Q Consensus 311 ~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-------------------------------- 358 (659)
++|++++++++++.||++|++||||+|++|+|||||+||||||.++|+
T Consensus 624 ~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~ 703 (1066)
T PLN02381 624 ARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDF 703 (1066)
T ss_pred HHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccC
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred -----cCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchh--hccccccc-
Q psy1860 359 -----KNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEE--KLSFQYNE- 430 (659)
Q Consensus 359 -----~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~--~~~~~~~~- 430 (659)
+| |||+||||+ ++.+.+ ++|++|+ ...+.++++|++++++...+... ...+.+..
T Consensus 704 p~gi~~y-GADalR~~l---------~~~~~~----~~di~~~---~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~ 766 (1066)
T PLN02381 704 PNGIAEC-GTDALRFAL---------VSYTAQ----SDKINLD---ILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPAT 766 (1066)
T ss_pred CCCcccc-ChHHHHHHH---------HcCCcc----ccccCcc---HHHHHHHHHHHHHHHHHHHHHHhhcccccCcccc
Confidence 89 999999999 766555 8899998 57788999999999554332110 00121110
Q ss_pred -ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCC--hHhHHHHHHHHHH
Q psy1860 431 -AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGG--PADCKVALNSLTK 506 (659)
Q Consensus 431 -~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~--~~~~~~~~~~l~~ 506 (659)
.......+|+|++++++.+++.++++|++|+|+.|++++++|+ +++||||++.+|+|++++.. ...+..++.+|+.
T Consensus 767 ~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~ 846 (1066)
T PLN02381 767 LSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWI 846 (1066)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHH
Confidence 0123467899999999999999999999999999999999997 78999999999999887532 2345678889999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhhhhcC-CCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCCC
Q psy1860 507 VLFTMVRVMAPYTPFLCEHLYQNLRHLTG-RLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERV-TIPIK 584 (659)
Q Consensus 507 ~l~~~~~lL~P~~P~~aEeiw~~L~~~~~-~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~-~i~~~ 584 (659)
++..+++||||||||+|||||+.|+.... ...+||+++.||.+.+.+.|++++..++.++.+++.+|++|+++ +++.+
T Consensus 847 vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k 926 (1066)
T PLN02381 847 CLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKN 926 (1066)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccC
Confidence 99999999999999999999999974211 12469999999999888889999999999999999999999998 77778
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEe----C------------CceeEEEecccCCHHHHHHHHHhh
Q psy1860 585 YPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFST----D------------KQKYGVSLRAEPDHKTLGARLKTA 648 (659)
Q Consensus 585 ~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~----~------------~~~~~v~l~~~~d~~~~~~rl~k~ 648 (659)
..+...+ ...++...+.++.+.+.|+.++|+.++.+.. . ..++++++.+.+|+++|.+||+|+
T Consensus 927 ~~~~~~~-~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~iD~~~E~~rL~K~ 1005 (1066)
T PLN02381 927 ERLPAFA-LCRNQEIAAIIKSHQLEILTLANLSSLKVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNK 1005 (1066)
T ss_pred cCCcEEE-EcCCHHHHHHHHHHHHHHHHhhCCCeeeeeccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHH
Confidence 7777543 3456666778899999999999998887641 1 123467788889999999999999
Q ss_pred HHHHHHHHhh
Q psy1860 649 FKPITQAIKV 658 (659)
Q Consensus 649 ~~~~~~~~~~ 658 (659)
++++++++++
T Consensus 1006 l~klekei~~ 1015 (1066)
T PLN02381 1006 MDEIQKQQEK 1015 (1066)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 8
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=2.3e-114 Score=1019.31 Aligned_cols=589 Identities=24% Similarity=0.333 Sum_probs=502.7
Q ss_pred CCccCCccccCc-ccccccCceeEEEeCC-CcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCC
Q psy1860 24 STLKGLQYQPLF-PYFKHVTSAFRVLTDT-YVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAP 101 (659)
Q Consensus 24 ~~l~g~~~~~p~-~~~~~~~~~~pi~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~ 101 (659)
++|+|++|.||+ . ++.+|||+++ ||++++|||+||+|||||++||+++++||| ++++++|++|+++++
T Consensus 281 ~~l~G~~~~~Pl~~-----~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~i~~~G~~~~~ 350 (995)
T PTZ00419 281 KKLHGKELIHPFIP-----DRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNL-----PFINIFTLDGKINEN 350 (995)
T ss_pred HHhcCCEEECCccC-----CCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCC-----CeeeeeCCCceEcCC
Confidence 468999999998 4 4689999999 999999999999999999999999999999 899999999999999
Q ss_pred CccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcC--CceEecCc
Q psy1860 102 VSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEF 179 (659)
Q Consensus 102 ~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~ 179 (659)
+|+|.|+.+++||++|++.|+++|++.+.++|+|+||||||||+||++++++||||++++|+++++++++ +++|+|++
T Consensus 351 ~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~ 430 (995)
T PTZ00419 351 GGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSS 430 (995)
T ss_pred CcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 79999999
Q ss_pred ccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeE--------EEec-cHHHHHHhhCCccccccccccccccccC
Q psy1860 180 VKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEI--------VCVG-SIAELHRLSGISVEKDLHRESVDSVTIP 250 (659)
Q Consensus 180 ~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~--------i~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 250 (659)
+ ++++.+||++++||||||||+||||||+|||++|+.. +++. ...+.....+. ...++
T Consensus 431 ~-~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 497 (995)
T PTZ00419 431 H-ENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKK------------KFGLS 497 (995)
T ss_pred H-HHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhcc------------ccCCc
Confidence 8 5899999999999999999999999999999876421 2221 11211111000 00011
Q ss_pred CCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEE
Q psy1860 251 SVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLI 330 (659)
Q Consensus 251 ~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~ 330 (659)
.++ ..++|++||||||||||++|+++++||. ++++|++|||+|++++|+||+|||+++|++++++++++.||++|+
T Consensus 498 --~~~-~~~~~~~DVlDtWFdS~l~p~~~~g~p~-~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~ 573 (995)
T PTZ00419 498 --EED-FELEQDEDVLDTWFSSGLFPFSTLGWPD-QTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVF 573 (995)
T ss_pred --ccc-CCeEECCceEEEEEeCCHHHHHHhCCCC-ChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHh
Confidence 112 3689999999999999999999999995 456799999999999999999999999999999999999999999
Q ss_pred EeceeecCCCCccccCCCCCCCCCCCCC-------------------------------------cCCCchhhhhhcccc
Q psy1860 331 ANGLVLAQDGQKMSKSKRNYPDPMEPPF-------------------------------------KNLIANGLVLSSDGQ 373 (659)
Q Consensus 331 ~hG~v~~~~G~KMSKS~GN~i~p~~~i~-------------------------------------~y~gaD~lR~~l~~~ 373 (659)
+||+|+|++|+|||||+||||||.++++ +| |||+||||+
T Consensus 574 ~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~y-GaDalR~~l--- 649 (995)
T PTZ00419 574 LHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPEC-GTDALRFGL--- 649 (995)
T ss_pred ccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCccc-CcHHHHHHH---
Confidence 9999999999999999999999999999 89 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhh-cccccccc--------cCCCChhhHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEK-LSFQYNEA--------EGSTNIMDAWIIS 444 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~-~~~~~~~~--------~~~~~~~d~~il~ 444 (659)
++.+++ ++|++|+ .+.+.++++|+|+++++.+..... ..+..... .......|+|+++
T Consensus 650 ------~~~~~~----~~Di~~~---~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls 716 (995)
T PTZ00419 650 ------LAYTQQ----GRNINLD---INRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILH 716 (995)
T ss_pred ------HhcCCC----CCCcccc---HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHH
Confidence 766555 8999999 577888899999995543321100 00110000 1234578999999
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy1860 445 FSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLC 523 (659)
Q Consensus 445 ~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~a 523 (659)
+++.+++.++++|++|+|+.|++.+++|+ +++|+||++.+|+|++...+..+++.++.+++++++.+++||||||||+|
T Consensus 717 ~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfit 796 (995)
T PTZ00419 717 RLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFIT 796 (995)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999986 88999999999999843333344677889999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHH
Q psy1860 524 EHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEI 603 (659)
Q Consensus 524 Eeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l 603 (659)
|+||++|+... ...+||+.+.||.+.+.+.|++++..++.++.+++.+|++|++.+++++.++...+ ...+++..+.+
T Consensus 797 EElw~~L~~~~-~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~~i~~~~~l~~~i-~~~~~~~~~~~ 874 (995)
T PTZ00419 797 EELYQRLPNYL-RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNKTKPDCYV-TAKDAELIELI 874 (995)
T ss_pred HHHHHhhhccC-CCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEE-EeCCHHHHHHH
Confidence 99999997421 13469999999999888889999999999999999999999999999999988654 34566667778
Q ss_pred HHHHHHHHhHhCcccEEEE---e---C------------CceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 604 RTLESYILQELNVRTVTFS---T---D------------KQKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 604 ~~l~~~I~~l~nv~~v~~~---~---~------------~~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
+...+.|+.++|+.++.+. . . ..++.+++.+.+|+++|.+||+|+++++++++++
T Consensus 875 ~~~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~id~~~E~~rL~K~l~kl~~ei~~ 947 (995)
T PTZ00419 875 ESAENLISTLAKIGSVSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLES 947 (995)
T ss_pred HHHHHHHHHhcCCCeeEEeccccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888775 1 1 1133577888999999999999999999999875
No 9
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-112 Score=993.96 Aligned_cols=570 Identities=25% Similarity=0.414 Sum_probs=498.8
Q ss_pred CccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCCcc
Q psy1860 25 TLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSH 104 (659)
Q Consensus 25 ~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~ 104 (659)
+|+|++|.+|+. ++.+|||+++||++++|||+||+|||||++||+++++||| ++++++|++|++++++|+
T Consensus 240 ~l~g~~~~~P~~-----~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~i~~~G~~~~~~~~ 309 (874)
T PRK05729 240 HLIGKTVILPLV-----GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNL-----PMINIMDEDGTINENPGE 309 (874)
T ss_pred HhcCCEEECCCC-----CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCC-----CcccccCCCCeEcCCCcc
Confidence 689999999985 5689999999999999999999999999999999999999 899999999999999999
Q ss_pred ccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcC--CceEecCcccc
Q psy1860 105 FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEFVKE 182 (659)
Q Consensus 105 ~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~~~~ 182 (659)
|+|+++++||++|++.|++.|++.+.++++|+||+|||||+||++++++||||++++++++++++++ +++|+|+++ +
T Consensus 310 ~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~-~ 388 (874)
T PRK05729 310 YQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERW-E 388 (874)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHH-H
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 689999998 5
Q ss_pred hhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCcccc
Q psy1860 183 KRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRV 262 (659)
Q Consensus 183 ~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~ 262 (659)
+++.+||++++||||||||+||||||+|+|+++ . +|++..+. +.| ....++|+
T Consensus 389 ~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~-~-~~v~~~~~------------------------~~~-~~~~~~~~ 441 (874)
T PRK05729 389 KTYFHWMENIQDWCISRQLWWGHRIPAWYDEDG-E-VYVGREEP------------------------EAR-EKALLTQD 441 (874)
T ss_pred HHHHHHHhcCccceeeeecccCCcccEEEeCCC-c-EEeCCccc------------------------ccc-cccCeEeC
Confidence 899999999999999999999999999999773 2 56544321 101 22358999
Q ss_pred ccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCc
Q psy1860 263 PEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQK 342 (659)
Q Consensus 263 ~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~K 342 (659)
+||||||||||++|+++++||. ++++|++|||+|++++|+||+|||+++++++++.++++.||++|++||+|+|.+|+|
T Consensus 442 ~DvlDtWfsS~l~~~~~lgwp~-~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~K 520 (874)
T PRK05729 442 EDVLDTWFSSALWPFSTLGWPE-KTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRK 520 (874)
T ss_pred CceecceecCCccHHHHhCCCC-CcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCC
Confidence 9999999999999999999994 456799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchh
Q psy1860 343 MSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEE 422 (659)
Q Consensus 343 MSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~ 422 (659)
||||+||||+|.+++++| |||+||||+ ++.+++ ++|++|+ .+.+.++++++|++++...+...
T Consensus 521 MSKSlGNvIdP~dvi~~y-GaDalR~~l---------l~~~~~----~~Di~fs---~~~l~~~~~~~nkl~N~~Rf~~~ 583 (874)
T PRK05729 521 MSKSKGNVIDPLDLIDKY-GADALRFTL---------AALASP----GRDIRFD---EERVEGYRNFANKLWNASRFVLM 583 (874)
T ss_pred cccCCCCCCCHHHHHHHh-ChHHHHHHH---------HhCCCC----CCCceeC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999 766555 8999999 56778888999998543332211
Q ss_pred h-ccccccc--ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChHhHH
Q psy1860 423 K-LSFQYNE--AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCK 498 (659)
Q Consensus 423 ~-~~~~~~~--~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~~~~ 498 (659)
. ..+.... ........|+|++++++.+++.+.++|++|+|+.|++.+++|+ +++|+||++.+|+|++ + ..++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~---~~~~ 659 (874)
T PRK05729 584 NLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E---AAKR 659 (874)
T ss_pred hcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hHHH
Confidence 0 0011010 0123567899999999999999999999999999999999998 7899999999999987 2 1256
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1860 499 VALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRER 578 (659)
Q Consensus 499 ~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~ 578 (659)
.++.+++++++.+++||||||||+||+||++|+.. +..+||+.+.||.+.+.+ |++++..++.++++++.+|++|++
T Consensus 660 ~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~--~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~ii~~ir~~r~~ 736 (874)
T PRK05729 660 ATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL--GIEESIMLAPWPEADEAI-DEAAEAEFEWLKELITAIRNIRAE 736 (874)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC--CCCCceeecCCCCCCccc-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999742 123589999999998777 889999999999999999999999
Q ss_pred cCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeC--------------CceeEEEecccCCHHHHHHH
Q psy1860 579 VTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTD--------------KQKYGVSLRAEPDHKTLGAR 644 (659)
Q Consensus 579 ~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~--------------~~~~~v~l~~~~d~~~~~~r 644 (659)
.+++++.++...+. ..++...+.++.+.+.|+.+++++++.+... ..++.+++.+.+|+++|.+|
T Consensus 737 ~~i~~~~~~~~~i~-~~~~~~~~~l~~~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~v~~~~~i~l~l~~~id~~~e~~r 815 (874)
T PRK05729 737 MNIPPSKKLPLLLK-GADAEDRARLEANEAYIKRLARLESLEILADDEEAPEGAASAVVGGAELFLPLEGLIDVEAELAR 815 (874)
T ss_pred cCCCCCCeeeEEEE-eCCHHHHHHHHHHHHHHHHHhCcCceEEecCCCcCCcCceEEEecCeEEEEECCCccCHHHHHHH
Confidence 99999999875443 4455566778888999999999998887431 12456788899999999999
Q ss_pred HHhhHHHHHHHHhh
Q psy1860 645 LKTAFKPITQAIKV 658 (659)
Q Consensus 645 l~k~~~~~~~~~~~ 658 (659)
|+|+++++++++++
T Consensus 816 L~K~l~kl~~ei~~ 829 (874)
T PRK05729 816 LEKELAKLEKEIER 829 (874)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 10
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-112 Score=999.15 Aligned_cols=579 Identities=22% Similarity=0.370 Sum_probs=498.9
Q ss_pred CCccCCccccCcccccccCceeEEEeC-CCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCC
Q psy1860 24 STLKGLQYQPLFPYFKHVTSAFRVLTD-TYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPV 102 (659)
Q Consensus 24 ~~l~g~~~~~p~~~~~~~~~~~pi~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~ 102 (659)
++|+|++|.||+. ++.+|||++ .||++++|||+||+|||||++||++|++||| ++++++|++|+|++.+
T Consensus 253 ~~L~G~~~~~Pl~-----~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~id~~G~~~~~~ 322 (1052)
T PRK14900 253 MALHGKKVRHPIT-----GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGL-----EMITVIGPDGRMTAEA 322 (1052)
T ss_pred HHhcCCEEECCCC-----CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCC-----CccceECCCcEEecCC
Confidence 3689999999985 468999976 4899999999999999999999999999999 8999999999999989
Q ss_pred ccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcC--CceEecCcc
Q psy1860 103 SHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEFV 180 (659)
Q Consensus 103 ~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~~ 180 (659)
++|.|+++++||++|+++|++.|++.+.+.|+|+||||||||+|||+++++||||++++|+++++++++ +++|+|+++
T Consensus 323 ~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~ 402 (1052)
T PRK14900 323 GPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQW 402 (1052)
T ss_pred cccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 499999998
Q ss_pred cchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCcc
Q psy1860 181 KEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLR 260 (659)
Q Consensus 181 ~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~ 260 (659)
.+++.+||++++||||||||+||||||+|+|+++ ++++.... . ..|+.||...+.
T Consensus 403 -~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~-~~~v~~~~---------------------~--~~~~~~~~~~~~ 457 (1052)
T PRK14900 403 -TNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDG-HVTVARET---------------------P--EACSTCGKAELR 457 (1052)
T ss_pred -HHHHHHHHhcCccceEEeecCCCceeCeEEcCCC-cEEecccc---------------------c--ccccccCcccee
Confidence 5899999999999999999999999999999764 33331100 0 012223556789
Q ss_pred ccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCC
Q psy1860 261 RVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDG 340 (659)
Q Consensus 261 ~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G 340 (659)
+++||||||||||++|+++++||. +.++|++|||+|+|++|+||++||+++++++++.+++..||++|++||||+|++|
T Consensus 458 ~~~dVlDvWFdS~l~y~s~~g~p~-~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G 536 (1052)
T PRK14900 458 QDEDVLDTWFSSGLWPFSTMGWPE-QTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG 536 (1052)
T ss_pred cCCceEEEEEcCChHHHHHHcCCC-chHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCC
Confidence 999999999999999999999995 3567999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccc
Q psy1860 341 QKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDA 420 (659)
Q Consensus 341 ~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~ 420 (659)
+|||||+||||+|.+++++| |+|+||||| ++.+++ ++|.+|+ .+.++++++++++++++..+.
T Consensus 537 ~KMSKSkGNvIdP~dvIe~y-GaDalR~~L---------~~~~~~----g~D~~fs---~~~l~~~~~f~nkl~N~~R~~ 599 (1052)
T PRK14900 537 QKMSKTKGNVIDPLVITEQY-GADALRFTL---------AALTAQ----GRDIKLA---KERIEGYRAFANKLWNASRFA 599 (1052)
T ss_pred CCccCCCCCCCCHHHHHHHh-CcHHHHHHH---------HhcCCC----CCCCccc---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999 776555 9999999 467788888999885433221
Q ss_pred hhh-cccccccc---cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChH
Q psy1860 421 EEK-LSFQYNEA---EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPA 495 (659)
Q Consensus 421 ~~~-~~~~~~~~---~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~ 495 (659)
... ..|..... .......|+|++++++.++.+++++|++|+|+.|++.+++|+ +++|||||+.+|+++++++ ..
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~-~~ 678 (1052)
T PRK14900 600 LMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASED-PE 678 (1052)
T ss_pred HHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCC-HH
Confidence 100 11211110 123467899999999999999999999999999999999998 6899999999999988753 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcC--CCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy1860 496 DCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTG--RLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGR 573 (659)
Q Consensus 496 ~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~--~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r 573 (659)
++..++.+++++++.+++||+|||||+||+||++|+.... +..+||+++.||.+.+ +|++++..++.++.+++.+|
T Consensus 679 ~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~--~d~~~e~~~~~v~~ii~~iR 756 (1052)
T PRK14900 679 ARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE--ADEAAEAAFRPVLGIIDAVR 756 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc--ccHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999974211 1136999999999876 68889999999999999999
Q ss_pred HHHHHcCCCCCCCce---eEEEEcCCHHHHHHHHH-HHHHHHhHhCcccEEEEeC---------------CceeEEEecc
Q psy1860 574 VIRERVTIPIKYPLR---EAVVIHNDAQCLQEIRT-LESYILQELNVRTVTFSTD---------------KQKYGVSLRA 634 (659)
Q Consensus 574 ~~r~~~~i~~~~pl~---~~~~~~~d~~~~~~l~~-l~~~I~~l~nv~~v~~~~~---------------~~~~~v~l~~ 634 (659)
++|++++++.++|+. ..++...+.+..+.++. +.++|..++|+.++.+..+ ..++++++.+
T Consensus 757 ~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~~v~~~~ev~l~l~~ 836 (1052)
T PRK14900 757 NIRGEMGIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSRLVVAAATAPAPQSAVGVGPGFEVRVPLAG 836 (1052)
T ss_pred HHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeEeeccccccCcccceEEecCceEEEEECCc
Confidence 999999999999984 33444556666677888 8889999999998877421 1245678899
Q ss_pred cCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 635 EPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 635 ~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
.+|++++.+||+|+++++++++++
T Consensus 837 ~iD~~~e~~rLekel~kl~Kel~k 860 (1052)
T PRK14900 837 VIDLAAETARVDKEIGKVDQDLAV 860 (1052)
T ss_pred ccCHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 11
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.9e-112 Score=991.25 Aligned_cols=579 Identities=26% Similarity=0.422 Sum_probs=505.2
Q ss_pred CCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCCc
Q psy1860 24 STLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVS 103 (659)
Q Consensus 24 ~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~ 103 (659)
++|+|++|.+|+. ++.+|||+++||++++|||+||+|||||++||+++++||| ++++++|++|++++++|
T Consensus 237 ~~l~g~~~~~P~~-----~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~id~~G~~~~~~~ 306 (861)
T TIGR00422 237 KHLIGKKVILPLT-----GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNL-----EFINILDEDGLLNENAG 306 (861)
T ss_pred HHhcCCEEEcCCC-----CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCC-----CccceeCCCCeEcCCCc
Confidence 4789999999985 4579999999999999999999999999999999999999 89999999999999999
Q ss_pred cccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcC--CceEecCccc
Q psy1860 104 HFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEFVK 181 (659)
Q Consensus 104 ~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~~~ 181 (659)
+|.|++++|||++|+++|+++|++++.++++|+||+|||||+||++++++||||++++++++++++++ +++|+|+++
T Consensus 307 ~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~- 385 (861)
T TIGR00422 307 KYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRM- 385 (861)
T ss_pred ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHH-
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 689999998
Q ss_pred chhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCC-CCCcc
Q psy1860 182 EKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPG-KPPLR 260 (659)
Q Consensus 182 ~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g-~~~~~ 260 (659)
++++.+||++++||||||||+||||||+|+|++++.+.+.....+.... ..| | ...+.
T Consensus 386 ~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~--------------------~~~-~~~~~~~ 444 (861)
T TIGR00422 386 EKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDK--------------------TNT-GPSVELE 444 (861)
T ss_pred HHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhh--------------------hcc-CCcccEE
Confidence 5899999999999999999999999999999887765543333332211 011 2 14689
Q ss_pred ccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCC
Q psy1860 261 RVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDG 340 (659)
Q Consensus 261 ~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G 340 (659)
|++||||||||||++|+++++||.+ +++|++|||+|++++|+||+|||+.++++++++++++.||++|++||||+|++|
T Consensus 445 ~~~dVlDtWFdS~l~~~s~~g~p~~-~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G 523 (861)
T TIGR00422 445 QDTDVLDTWFSSSLWPFSTLGWPDE-TKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQG 523 (861)
T ss_pred ECCCcccceeccchHHHHHhCCCCC-hHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCC
Confidence 9999999999999999999999954 367999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccc
Q psy1860 341 QKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDA 420 (659)
Q Consensus 341 ~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~ 420 (659)
+|||||+||+|+|.+++++| |+|++|||+ ++.+++ ++|.+|+ .+.+.+.+++++++++...+.
T Consensus 524 ~KMSKS~GN~i~p~~~i~~y-gaDalR~~l---------~~~~~~----~~d~~f~---~~~~~~~~~~~nkl~N~~rf~ 586 (861)
T TIGR00422 524 RKMSKSLGNVIDPLDVIEKY-GADALRFTL---------ASLVTP----GDDINFD---WKRVESARNFLNKLWNASRFV 586 (861)
T ss_pred CCCCcCCCCCCCHHHHHHHh-ChHHHHHHH---------HhCCCC----CCCceec---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999 777555 8999999 456778888888885533322
Q ss_pred hhhc-ccc-cccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChHhH
Q psy1860 421 EEKL-SFQ-YNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADC 497 (659)
Q Consensus 421 ~~~~-~~~-~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~~~ 497 (659)
.... .+. ...........|+|++++++.+++.++++|++|+|+.|++.+++|+ +++||||++.+|+|++.++ ..++
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~-~~~~ 665 (861)
T TIGR00422 587 LMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN-EAEK 665 (861)
T ss_pred HhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCC-cHHH
Confidence 1110 010 0000123567899999999999999999999999999999999996 8999999999999987654 3456
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1860 498 KVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRE 577 (659)
Q Consensus 498 ~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~ 577 (659)
..++.+++++++.+++||+|||||+||+||++|+. ..+|||++.||.+++.++|++++..++.++++++.+|++|+
T Consensus 666 ~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~----~~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~ 741 (861)
T TIGR00422 666 KAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE----GADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKA 741 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc----cCCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999963 34699999999999888899999999999999999999999
Q ss_pred HcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeCCc-------------eeEEEecccCCHHHHHHH
Q psy1860 578 RVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQ-------------KYGVSLRAEPDHKTLGAR 644 (659)
Q Consensus 578 ~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~-------------~~~v~l~~~~d~~~~~~r 644 (659)
+.++++++|+...++ ..+....+.++...+.|+.++|++++.+..+.. ++.+++.+.+|..++.+|
T Consensus 742 ~~~i~~~~~l~~~i~-~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~~e~~~ 820 (861)
T TIGR00422 742 ESNIPPNAPLKVLLI-YTEAETAERLKLNAVDIKGAINFSEVEVVIEKPEVTEAVVELVPGFEIIIPVKGLINKAKELAR 820 (861)
T ss_pred HcCCCCCCcceEEEE-eCCHHHHHHHHHHHHHHhhhcCCCceEeeccCCccccceEEEccCcEEEEEhHhhcCHHHHHHH
Confidence 999999999986543 444455677888899999999999888754321 234556688999999999
Q ss_pred HHhhHHHHHHHHhh
Q psy1860 645 LKTAFKPITQAIKV 658 (659)
Q Consensus 645 l~k~~~~~~~~~~~ 658 (659)
|.|+++++++++++
T Consensus 821 l~k~l~~~~~~i~~ 834 (861)
T TIGR00422 821 LQKQLDKEKKEVIR 834 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 12
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-112 Score=990.31 Aligned_cols=568 Identities=29% Similarity=0.481 Sum_probs=479.2
Q ss_pred cchHHHHhhc--CCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhC
Q psy1860 2 QSRLETLFKK--EEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAG 79 (659)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 79 (659)
+++++.+.++ .++++++++++|++|+|++|.||+. ++.+||++++||++++|||+||+|||||++||++|++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~-----~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~ 342 (912)
T PRK05743 268 KDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY-----DRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKY 342 (912)
T ss_pred HHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC-----CCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHc
Confidence 4567777653 3568999999999999999999996 45799999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeec
Q psy1860 80 GVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRV 159 (659)
Q Consensus 80 ~l~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~ 159 (659)
|| ++++++|++|+|++.+++|.|+++++|+++|++.|+++|.+++.++++|+||||||||+||++|+++||||++
T Consensus 343 ~L-----~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~ 417 (912)
T PRK05743 343 GL-----EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISM 417 (912)
T ss_pred CC-----CcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeC
Confidence 99 8899999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hH--hHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEe----ccHHHHHHhhCC
Q psy1860 160 QH--MNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCV----GSIAELHRLSGI 233 (659)
Q Consensus 160 ~~--~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~----~~~~~~~~~~~~ 233 (659)
++ +|+++++++++++|+|++. ++++.+||++++||||||||+||||||+|+|++|++++.. .+++++.+..|.
T Consensus 418 ~~~~~k~~~l~~~~~v~~~P~~~-~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~ 496 (912)
T PRK05743 418 DKKGLREQALKAIEKVKWIPAWG-KNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGI 496 (912)
T ss_pred ChHHHHHHHHHHHcccEEEChHH-HHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCC
Confidence 98 9999999999999999998 5899999999999999999999999999999988776642 122333334444
Q ss_pred ccccccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHH
Q psy1860 234 SVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTL 313 (659)
Q Consensus 234 ~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ 313 (659)
+.+.+. ..+++ +|+ |+ ..+.|++||||||||||++|++++++ +. +++||+|+|++|+||+||||+++
T Consensus 497 ~~W~~~---~~~~~-~~~--~~-~~~~~~~DvlDvWfdSg~s~~~~~~~----~~--~~~~P~Dl~~~G~Di~r~Wf~~~ 563 (912)
T PRK05743 497 DAWFEL---DAKEL-LPD--EA-DEYEKETDILDVWFDSGSSHAAVLEQ----RP--ELGYPADLYLEGSDQHRGWFQSS 563 (912)
T ss_pred cccccc---CHHHh-cCC--cc-cCEEECCchhhhhhhhCCCHHHHhcC----cc--ccCCCceEEEecccccchHHHHH
Confidence 433111 11222 332 22 46899999999999999999888763 11 26899999999999999999999
Q ss_pred HHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCccc
Q psy1860 314 LVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLC 393 (659)
Q Consensus 314 ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~ 393 (659)
++.++++++.+||++|++||||+|++|+|||||+||||+|.+++++| |||+||||+ ++ +++ ++|.
T Consensus 564 l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~y-GaDalR~~l---------l~-~~~----~~D~ 628 (912)
T PRK05743 564 LLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKY-GADILRLWV---------AS-TDY----SGDV 628 (912)
T ss_pred HHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhc-ChHHHHHHH---------Hh-cCC----CCCe
Confidence 99999999999999999999999999999999999999999999999 999999999 75 455 8999
Q ss_pred ccccCchhhhHHHHHHHHHH-----HHHhccchhhcccccccc---cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhH
Q psy1860 394 PVHVWEPVHVWSVCLILKEK-----VLLANDAEEKLSFQYNEA---EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTV 465 (659)
Q Consensus 394 ~f~lw~~~~~~~~~~~~~~l-----~~l~n~~~~~~~~~~~~~---~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a 465 (659)
+|+ ++.+.+..++++++ |+++|+.. +..... ...+...|+|+++++++++++++++|++|+|++|
T Consensus 629 ~~s---~~~l~~~~~~~~kl~N~~rf~~~nl~~----~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a 701 (912)
T PRK05743 629 RIS---DEILKQVAEAYRRIRNTLRFLLGNLND----FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKV 701 (912)
T ss_pred eec---HHHHHHHHHHHHHHHHHHHHHHhCccC----CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999 56777766666766 34555432 211100 1235678999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHccccccCCCC-hHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCcee
Q psy1860 466 VPRLVLFI-DNLTNWYVRMNRRRLKGEGG-PADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHF 543 (659)
Q Consensus 466 ~~~l~~f~-~~~~~~Yle~~K~~l~~~~~-~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~ 543 (659)
++.+++|+ +++|++|++.+|+|+|+... ...+++++.+|+.++..+++||+|||||+|||+|++|+. +..+||++
T Consensus 702 ~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~---~~~~sv~~ 778 (912)
T PRK05743 702 YQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPG---EREESVFL 778 (912)
T ss_pred HHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccc---CCCCceEE
Confidence 99999999 68999999999999988642 334567888999999999999999999999999999962 24579999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccE
Q psy1860 544 IMMPQPNRGIIDQEIERSVKRMQS----VVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTV 619 (659)
Q Consensus 544 ~~~P~~~~~~~d~~~e~~~~~~~~----~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v 619 (659)
+.||.+++.+.|++++..++.+.. ++..++..|++..|..+ ++..+++..+. +.+..+.+.+..+++++++
T Consensus 779 ~~wP~~~~~~~~~~~~~~~~~~~~~r~~v~~~i~~~r~~~~i~~~--~~~~~~~~~~~---~~l~~~~~~l~~~~~vs~v 853 (912)
T PRK05743 779 EEWPEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSS--LEAEVTLYADA---ALLESLGDELRFLLIVSQV 853 (912)
T ss_pred ecCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc--cceEEEEEcCH---HHHHHHHHHHHHHhhhCce
Confidence 999998888888888888888874 56677777777766554 44444344443 4566666778899999999
Q ss_pred EEEe
Q psy1860 620 TFST 623 (659)
Q Consensus 620 ~~~~ 623 (659)
.+..
T Consensus 854 ~~~~ 857 (912)
T PRK05743 854 EVAD 857 (912)
T ss_pred EEec
Confidence 8853
No 13
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-111 Score=984.28 Aligned_cols=577 Identities=27% Similarity=0.413 Sum_probs=469.9
Q ss_pred cchHHHHhhc--CCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhC
Q psy1860 2 QSRLETLFKK--EEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAG 79 (659)
Q Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 79 (659)
+++++.+.++ .++++++.+++|++|+|++|.||+.........+||++++||++++|||+||+|||||++||+++++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~ 364 (961)
T PRK13804 285 DALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKY 364 (961)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHc
Confidence 3567777664 24589999999999999999999952100011799999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCccccCCCcc--------ccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcc
Q psy1860 80 GVITRDQEIVCPVDASGCFTAPVSH--------FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKA 151 (659)
Q Consensus 80 ~l~~~~~~~~~~vd~~G~~~~~~~~--------~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~ 151 (659)
||. ++.++||++|+|++.+++ |.|+.++||++.|++.|+++|.+++.++++|+||||||||+|||+|+
T Consensus 365 ~l~----~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~ 440 (961)
T PRK13804 365 GRT----EIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRN 440 (961)
T ss_pred CCC----cccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEec
Confidence 992 367799999999988776 88999999999999999999999999999999999999999999999
Q ss_pred cCceeeechH-------hHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccH
Q psy1860 152 VPSWFIRVQH-------MNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSI 224 (659)
Q Consensus 152 ~~qwFi~~~~-------~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~ 224 (659)
++|||+++++ +|+++++++++++|+|++. ++++.+||++++||||||||+||||||+|||++++.++....+
T Consensus 441 t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~-~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~ 519 (961)
T PRK13804 441 TPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAG-QNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVN 519 (961)
T ss_pred cccccEEcCCcccchHHHHHHHHHHHhccEEECHHH-HHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHH
Confidence 9999999998 9999999999999999998 5899999999999999999999999999999765333222222
Q ss_pred ---HHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEee
Q psy1860 225 ---AELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAE 301 (659)
Q Consensus 225 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~ 301 (659)
.++.+..|.+.+. +.+..+ + +|+..++...++|++||||||||||+++...++ +++++ .||+|+|++
T Consensus 520 ~~~~~~~~~~g~~~w~--~~~~~~-~-~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~----~~~~~--~~PaD~~~e 589 (961)
T PRK13804 520 ARIADAFEEEGADAWF--AEGAKE-R-FLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLE----DRPDL--KWPADLYLE 589 (961)
T ss_pred HHHHHHHHhcCCcccc--ccCHHH-h-cCcccCcccceEecCcceeeeecCCCCcccccc----CCccc--CCCceEEEE
Confidence 3333344544331 111111 1 333211235799999999999999998876553 23334 589999999
Q ss_pred ccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccC
Q psy1860 302 GIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKN 381 (659)
Q Consensus 302 G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~ 381 (659)
|+||+||||++++++++++++.+||++|++||||+|++|+|||||+||||+|.+++++| |||+||||+ ++
T Consensus 590 G~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~y-GaD~lRl~l---------ls 659 (961)
T PRK13804 590 GSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQS-GADILRLWV---------AS 659 (961)
T ss_pred EcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhc-CHHHHHHHH---------Hh
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999 65
Q ss_pred CCCCccccCcccccccCchhhhHHHHHHHHHH-----HHHhccchhhccccccc---ccCCCChhhHHHHHHHHHHHHHH
Q psy1860 382 YPDPMEVRGRLCPVHVWEPVHVWSVCLILKEK-----VLLANDAEEKLSFQYNE---AEGSTNIMDAWIISFSESLIEFV 453 (659)
Q Consensus 382 ~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l-----~~l~n~~~~~~~~~~~~---~~~~~~~~d~~il~~l~~~~~~~ 453 (659)
. ++ ++|.+|+ .+.+....++++++ ++++|+.. |.... ........|+|++++++++++.+
T Consensus 660 ~-~~----~~D~~fs---~~~l~~~~~~~~kL~N~~rf~l~nl~~----~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v 727 (961)
T PRK13804 660 V-DY----SDDQRIG---KEILKQVSETYRKLRNTLRWLLGNLAH----FDPGEDVVAYADLPELERYMLHRLNELDGLV 727 (961)
T ss_pred C-CC----CCCcccC---HHHHHHHHHHHHHHHHHHHHHHhcccc----CCcccccCChhhcCHHHHHHHHHHHHHHHHH
Confidence 3 45 8999999 56666666677766 34455433 22110 12245678999999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCC-ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy1860 454 RKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEG-GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLR 531 (659)
Q Consensus 454 ~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 531 (659)
+++|++|+|++|++++++|+ +++|++|++.+|+|+|++. +...+++++.+|+.+++.+++||+|||||+|||||++|+
T Consensus 728 ~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~ 807 (961)
T PRK13804 728 REAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRY 807 (961)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcc
Confidence 99999999999999999998 7899999999999999864 334467788999999999999999999999999999997
Q ss_pred hhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHH---H-HHHHHHHHHcCCCCCCCceeEEEEc-CCHHHHHHHHHH
Q psy1860 532 HLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSV---V-ELGRVIRERVTIPIKYPLREAVVIH-NDAQCLQEIRTL 606 (659)
Q Consensus 532 ~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~---i-~~~r~~r~~~~i~~~~pl~~~~~~~-~d~~~~~~l~~l 606 (659)
. ...+|||++.||.+.+.+.+++++..++.++.+ + ..+|++|++..|..+ +++.+++. .+.+..+.+..+
T Consensus 808 ~---~~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~--~e~~v~l~~~~~~~~~~l~~~ 882 (961)
T PRK13804 808 P---EEEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSS--LEAAPTVYIADPELLAALEGL 882 (961)
T ss_pred c---CCCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--cceeEEEEcCCHHHHHHHHHH
Confidence 3 134699999999988888888888887666553 3 567777777766554 44444443 343444555554
Q ss_pred HHHHHhHhCcccEEEE
Q psy1860 607 ESYILQELNVRTVTFS 622 (659)
Q Consensus 607 ~~~I~~l~nv~~v~~~ 622 (659)
.|+.+++|+++.+.
T Consensus 883 --~l~~~~~vs~~~~~ 896 (961)
T PRK13804 883 --DFAEICITSQLTVA 896 (961)
T ss_pred --HHHHHhhhCceEEe
Confidence 38889999999885
No 14
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.6e-111 Score=980.89 Aligned_cols=575 Identities=27% Similarity=0.418 Sum_probs=471.2
Q ss_pred chHHHHhhc-CCceEEEEeeecCCccCCccccCcccccccCceeEEE-eCCCcCCCCCCceeecCCCCChhhHHHHHhCC
Q psy1860 3 SRLETLFKK-EEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVL-TDTYVTEESGTGVVHQAPYFGEDDYRVCLAGG 80 (659)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~-~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 80 (659)
++++++++. ..+++++++++|++|+|++|.|||. ++.+||+ +++||++++|||+||+|||||++||+++++||
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-----~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~ 359 (974)
T PLN02843 285 DLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLY-----NRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYG 359 (974)
T ss_pred HHHHHHHHhhCCceEEEeeechHHcCCCEEECCCC-----CCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcC
Confidence 566666552 2359999999999999999999995 3578996 58999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCccccCCCccccCcccc-cCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeec
Q psy1860 81 VITRDQEIVCPVDASGCFTAPVSHFLGLYVK-DADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRV 159 (659)
Q Consensus 81 l~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~-~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~ 159 (659)
| ++++++|++|+|++.+|+|.|+.|+ +||++|++.|+++|.+++.++++|+||||||||+|||+|+++|||+++
T Consensus 360 l-----~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~ 434 (974)
T PLN02843 360 L-----PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASV 434 (974)
T ss_pred C-----CcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeC
Confidence 9 8999999999999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEE-eccHHHH---HHhhCCcc
Q psy1860 160 QHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVC-VGSIAEL---HRLSGISV 235 (659)
Q Consensus 160 ~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~-~~~~~~~---~~~~~~~~ 235 (659)
+++|+++++++++++|+|++. ++++.+||++++||||||||+||||||+|+|.++++.+. .++++++ .+..|.+.
T Consensus 435 ~~~k~~al~~~~~v~~~P~~~-~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 513 (974)
T PLN02843 435 EGFRQAALDAIDKVKWIPAQG-ENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDA 513 (974)
T ss_pred HHHHHHHHHHHhccEEEChHH-HHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcc
Confidence 999999999999999999998 589999999999999999999999999999987776543 3444444 34445443
Q ss_pred ccccccccccccccCCCC-CCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHH
Q psy1860 236 EKDLHRESVDSVTIPSVR-PGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLL 314 (659)
Q Consensus 236 ~~~~~~~~~d~~~~~~~~-~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~l 314 (659)
+ |....+.+ +|+.. +....+.|++||||||||||+++.+.+++ + .+.+||+|+|++|+||+||||++++
T Consensus 514 w---~~~~~~~l-~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~----~--~~~~~PaDl~~eG~Di~rgWf~s~l 583 (974)
T PLN02843 514 W---WYMDVEDL-LPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS----R--EGLSYPADLYLEGSDQHRGWFQSSL 583 (974)
T ss_pred c---ccCCHHHh-CcccccCchhhhEecccccccchhcCCChHHHhcc----c--cccCCCceeeeeeccccchHHHHHH
Confidence 3 22122222 23321 12346899999999999999987665532 1 2357999999999999999999999
Q ss_pred HHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC---------cCCCchhhhhhcccccccccccCCCCC
Q psy1860 315 VISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF---------KNLIANGLVLSSDGQKMSKSKKNYPDP 385 (659)
Q Consensus 315 l~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~---------~y~gaD~lR~~l~~~~msk~~~~~~~~ 385 (659)
++++++.+..||++|++|||++|++|+|||||+||||+|.++++ +| |||+||||+ ++. ++
T Consensus 584 ~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~y-GaD~lR~~l---------~~~-~~ 652 (974)
T PLN02843 584 LTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAY-GADVLRLWV---------ASV-DY 652 (974)
T ss_pred HHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccccccccc-ChHHHHHHH---------Hhc-cc
Confidence 99999999999999999999999999999999999999999999 79 999999999 643 34
Q ss_pred ccccCcccccccCchhhhHHHHHHHHHH-----HHHhccchhhccccccc--ccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy1860 386 MEVRGRLCPVHVWEPVHVWSVCLILKEK-----VLLANDAEEKLSFQYNE--AEGSTNIMDAWIISFSESLIEFVRKEMA 458 (659)
Q Consensus 386 ~~~~~~d~~f~lw~~~~~~~~~~~~~~l-----~~l~n~~~~~~~~~~~~--~~~~~~~~d~~il~~l~~~~~~~~~~~e 458 (659)
++|++|+ .+.++.+.++++++ |+++|+.+. .... ....+..+|+|+++++++++++++++|+
T Consensus 653 ----~~d~~~s---~~~l~~~~~~~~kl~n~~rf~lgnl~~~----~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye 721 (974)
T PLN02843 653 ----TGDVLIG---PQILKQMSDIYRKLRGTLRYLLGNLHDW----KPDNAVPYEDLPSIDKYALFQLENVVNEIEESYD 721 (974)
T ss_pred ----CCCceeC---HHHHHHHHHHHHHHHHHHHHHHhCccCC----CcccccCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999 57778777887776 456776542 1111 0123457899999999999999999999
Q ss_pred hcchhhHHHHHHHHH-HHHHHHHHHHccccccCCC-ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcC-
Q psy1860 459 AYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEG-GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTG- 535 (659)
Q Consensus 459 ~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~- 535 (659)
+|+|++|++.+++|+ .++|++|++.+|+|+|++. +...++.++.+|+.+++.+++||+|||||+|||||++|+....
T Consensus 722 ~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~ 801 (974)
T PLN02843 722 NYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDG 801 (974)
T ss_pred ccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccC
Confidence 999999999999987 6899999999999998764 3344567788899999999999999999999999999974210
Q ss_pred CCCCCceeccCCCCCCCCCC--HHHHHHHHHH----HHHHHHHHHHHHHcCCCCCCCceeEEEEc-CCHHHHHHHHHH--
Q psy1860 536 RLERSIHFIMMPQPNRGIID--QEIERSVKRM----QSVVELGRVIRERVTIPIKYPLREAVVIH-NDAQCLQEIRTL-- 606 (659)
Q Consensus 536 ~~~~sv~~~~~P~~~~~~~d--~~~e~~~~~~----~~~i~~~r~~r~~~~i~~~~pl~~~~~~~-~d~~~~~~l~~l-- 606 (659)
+..+|||++.||.+.+.+.+ +.++..++.+ ..++..+|++|++..|..+.... +.+. .+++..+.++.+
T Consensus 802 ~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~~~~~~~--v~l~~~~~~~~~~l~~~~~ 879 (974)
T PLN02843 802 SAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAK--VYLHASDASLAARLAELCG 879 (974)
T ss_pred CCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccee--EEEEeCCHHHHHHHHhhcc
Confidence 12469999999998876655 4444444444 44667888888888776654443 3333 344344556552
Q ss_pred ----HHHHHhHhCcccEEEE
Q psy1860 607 ----ESYILQELNVRTVTFS 622 (659)
Q Consensus 607 ----~~~I~~l~nv~~v~~~ 622 (659)
.+.+..+++|+++.+.
T Consensus 880 ~~~~~~~l~~l~~vs~v~~~ 899 (974)
T PLN02843 880 ASNGADELRRIFITSQVEVV 899 (974)
T ss_pred ccchHHHHHHHhccCceEee
Confidence 3668899999999885
No 15
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=6e-110 Score=970.87 Aligned_cols=576 Identities=21% Similarity=0.350 Sum_probs=487.2
Q ss_pred CccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCCcc
Q psy1860 25 TLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSH 104 (659)
Q Consensus 25 ~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~ 104 (659)
+|+|++|.+|+.. ++.+||++++||++++|||+||+|||||++||++|++||| ++++++|++|++++.+
T Consensus 293 ~l~g~~~~~Pl~~----~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~id~~G~~~~~~-- 361 (958)
T PLN02943 293 KYIGKMAIVPMTY----GRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVA-- 361 (958)
T ss_pred HHcCCEEECCCcC----CCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCC-----CceeeeCCCceeeccC--
Confidence 4678888888831 4589999999999999999999999999999999999999 8999999999998754
Q ss_pred ccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcC--CceEecCcccc
Q psy1860 105 FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEFVKE 182 (659)
Q Consensus 105 ~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~~~~ 182 (659)
|+.+++||++|+++|+++|++++.++++|+||+|||||+||++++++||||++++++++++++++ +++|+|++. +
T Consensus 362 --g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~-~ 438 (958)
T PLN02943 362 --GLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERF-E 438 (958)
T ss_pred --CccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHH-H
Confidence 55599999999999999999999999999999999999999999999999999999999999975 599999998 5
Q ss_pred hhhhhhhcCCCceEeeeccCCCccccEEEe--CCCCe-EEEeccHHHHHHhhCCccccccccccccccccCCCCCCC-CC
Q psy1860 183 KRFGNWLREARDWAISRNRYWGTPIPLWVS--DDGEE-IVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGK-PP 258 (659)
Q Consensus 183 ~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~--~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~-~~ 258 (659)
+++.+||++++||||||||+||||||+|+| .+|+. +++.....+.....+ + .||. ..
T Consensus 439 ~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~--~~g~~~~ 499 (958)
T PLN02943 439 KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAR-----------------E--KYGKDVE 499 (958)
T ss_pred HHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhh-----------------h--hcCCchh
Confidence 899999999999999999999999999998 35554 333333332221110 1 1132 25
Q ss_pred ccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecC
Q psy1860 259 LRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQ 338 (659)
Q Consensus 259 ~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~ 338 (659)
+.+++||||||||||++|+++++||..++++|++|||+|++++|+||+|||+++++++++.++++.||++|++||+++|.
T Consensus 500 ~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~ 579 (958)
T PLN02943 500 IYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDS 579 (958)
T ss_pred eeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECC
Confidence 78999999999999999999999996556789999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHH---
Q psy1860 339 DGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVL--- 415 (659)
Q Consensus 339 ~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~--- 415 (659)
+|+|||||+||+|+|.+++++| |+|++|||+ ++. ++ ++|.+|+ .+.+...+++++++++
T Consensus 580 ~G~KMSKS~GN~i~p~~~i~~y-gaDalR~~l---------~~~-~~----~~d~~fs---~~~l~~~~~~~~kl~N~~r 641 (958)
T PLN02943 580 QGRKMSKTLGNVIDPLDTIKEF-GTDALRFTL---------ALG-TA----GQDLNLS---TERLTSNKAFTNKLWNAGK 641 (958)
T ss_pred CCCcccCcCCCCCCHHHHHHhc-CChHHHHHH---------HhC-CC----CCCcccc---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999 654 34 8999999 5677788889998844
Q ss_pred --Hhccchhhc----------ccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHH
Q psy1860 416 --LANDAEEKL----------SFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVR 482 (659)
Q Consensus 416 --l~n~~~~~~----------~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle 482 (659)
++|+..... .|........++..|+|++++++.++++++++|++|+|+.|++.+++|+ +++||||++
T Consensus 642 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE 721 (958)
T PLN02943 642 FVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIE 721 (958)
T ss_pred HHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 333211100 0111100123567899999999999999999999999999999999997 799999999
Q ss_pred HccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHH
Q psy1860 483 MNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSV 562 (659)
Q Consensus 483 ~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~ 562 (659)
.+|+|++++++...+..++.+++++++.+++||+|||||+||+||++|+. ..+||+.+.||.+. ...|++++..+
T Consensus 722 ~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~----~~~si~~~~wP~~~-~~~d~~~~~~~ 796 (958)
T PLN02943 722 ASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY----RKEALIVSPWPQTS-LPKDLKSIKRF 796 (958)
T ss_pred hccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC----CCCceeecCCCCCc-ccCCHHHHHHH
Confidence 99999987654444677889999999999999999999999999999962 34699999999976 45688889999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcc--cEEEEe---------------CC
Q psy1860 563 KRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVR--TVTFST---------------DK 625 (659)
Q Consensus 563 ~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~--~v~~~~---------------~~ 625 (659)
+.++++++.+|++|++++++++.++...+ ...+ +..+.+....+.|+.+++++ ++.+.. ..
T Consensus 797 ~~v~~ii~~iR~~r~~~~i~~~~~~~~~i-~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (958)
T PLN02943 797 ENLQSLTRAIRNARAEYSVEPAKRISASI-VASA-EVIEYISKEKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVASEG 874 (958)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccEEE-ecCh-hHHHHHHHHHHHHHHHhcCcccccccccCCCccccceeEEEecCc
Confidence 99999999999999999999998887553 3333 34566778888888888753 443321 12
Q ss_pred ceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 626 QKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 626 ~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
.++.+++.+.+|+++|.+||+|+++++++++++
T Consensus 875 ~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~ 907 (958)
T PLN02943 875 LEAYLPLADMVDISAEVERLSKRLSKMQTEYDA 907 (958)
T ss_pred eEEEEeccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999976
No 16
>KOG0432|consensus
Probab=100.00 E-value=1.1e-109 Score=891.95 Aligned_cols=588 Identities=23% Similarity=0.360 Sum_probs=501.2
Q ss_pred CccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCCcc
Q psy1860 25 TLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSH 104 (659)
Q Consensus 25 ~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~ 104 (659)
.|-|+...|||. ++.+|||.|.+|++++|||+|++|||||++||++|++||| +.+++++++|.+++.+|+
T Consensus 296 ~lhGk~~~hP~~-----~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L-----~~~ni~~~dG~l~~~~ge 365 (995)
T KOG0432|consen 296 HLHGKFVKHPFT-----GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNL-----EFINIFTDDGLLNNVCGE 365 (995)
T ss_pred cccCceeecCCC-----CCccceeecccccccccccceEecCCCChhHHHHHHhcCC-----CceeEEcCCCceeccchh
Confidence 355666667775 5789999999999999999999999999999999999999 889999999999999999
Q ss_pred ccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcC--CceEecCcccc
Q psy1860 105 FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEFVKE 182 (659)
Q Consensus 105 ~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~~~~ 182 (659)
|+||++++||++|++.|++.|++....+++...|.|+|||+.||+.+.+|||++++++.++++++++ ++.++|+.. +
T Consensus 366 f~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~-~ 444 (995)
T KOG0432|consen 366 FKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFH-E 444 (995)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHH-H
Confidence 9999999999999999999999998888888899999999999999999999999999999999976 689999998 5
Q ss_pred hhhhhhhcCCCceEeeeccCCCccccEEEeC------CCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCC
Q psy1860 183 KRFGNWLREARDWAISRNRYWGTPIPLWVSD------DGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGK 256 (659)
Q Consensus 183 ~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~ 256 (659)
+++.+|+++.+|||||||+||||+||+|+.. +++..++-.+.++..+...... -|+ ..
T Consensus 445 k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~-------------g~~---~~ 508 (995)
T KOG0432|consen 445 KEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKF-------------GPG---KE 508 (995)
T ss_pred HHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHh-------------CCc---cc
Confidence 8899999999999999999999999999873 1334555555555544322110 010 11
Q ss_pred CCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceee
Q psy1860 257 PPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVL 336 (659)
Q Consensus 257 ~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~ 336 (659)
-.++||+|||||||+||++|++++|||+ .++++..+||.++.-+|.||++||+.+|+|+++.++|+.||++|++||+|+
T Consensus 509 ~~L~qDpDVLDTWFSS~L~PfS~lGWP~-~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVR 587 (995)
T KOG0432|consen 509 FTLEQDPDVLDTWFSSGLWPFSTLGWPE-ETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVR 587 (995)
T ss_pred ceeecCccHHHhhhhcccccchhcCCcc-ccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhc
Confidence 3578999999999999999999999995 567899999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCCCCCCCc------------------------------C------CCchhhhhhccccccccccc
Q psy1860 337 AQDGQKMSKSKRNYPDPMEPPFK------------------------------N------LIANGLVLSSDGQKMSKSKK 380 (659)
Q Consensus 337 ~~~G~KMSKS~GN~i~p~~~i~~------------------------------y------~gaD~lR~~l~~~~msk~~~ 380 (659)
|..|||||||+||||||.|+|+. | ||+|||||.| +
T Consensus 588 Da~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL---------~ 658 (995)
T KOG0432|consen 588 DAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFAL---------C 658 (995)
T ss_pred cccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHH---------H
Confidence 99999999999999999999983 2 7999999999 6
Q ss_pred CCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchh--hcccccccc---cCCCChhhHHHHHHHHHHHHHHHH
Q psy1860 381 NYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEE--KLSFQYNEA---EGSTNIMDAWIISFSESLIEFVRK 455 (659)
Q Consensus 381 ~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~--~~~~~~~~~---~~~~~~~d~~il~~l~~~~~~~~~ 455 (659)
+.. ..++|++++ ...+++++.|+||+|+...+... +.+|.+... .......|+||+++|+.+++.+.+
T Consensus 659 s~~----~~~~dInLD---v~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~ 731 (995)
T KOG0432|consen 659 SYT----TQGRDINLD---VLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNE 731 (995)
T ss_pred Hcc----ccCcccccc---HHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHh
Confidence 663 348999998 68999999999999776654332 223333221 112223899999999999999999
Q ss_pred HHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhc
Q psy1860 456 EMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLT 534 (659)
Q Consensus 456 ~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~ 534 (659)
.|+.|+|..|.++++.|+ .++|+.|+|.+|+.++.+. ......+..+|+.++...++||||||||+|||+||+|+.+.
T Consensus 732 ~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~-~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~ 810 (995)
T KOG0432|consen 732 SLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS-EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRK 810 (995)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCC
Confidence 999999999999999998 8999999999999888764 34567788899999999999999999999999999998765
Q ss_pred CCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHh
Q psy1860 535 GRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQEL 614 (659)
Q Consensus 535 ~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~ 614 (659)
+....|+..++||...+.+-++++|..++.+++++..+|++|+.++++.+.... +.+...++.....++.+.+.|..+.
T Consensus 811 ~~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~l~~~~~~~-v~~~~s~~~~~~~~~~~~~~i~~l~ 889 (995)
T KOG0432|consen 811 GSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYNLSPKPRGS-VFIASSDEEDKSILKEFLDEISTLT 889 (995)
T ss_pred CCCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceE-EEEecCCCcchhHHHHHHHHHHHhh
Confidence 555568999999977788899999999999999999999999999998643322 2223333433556777888888888
Q ss_pred CcccEEEEeCCc---------------eeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 615 NVRTVTFSTDKQ---------------KYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 615 nv~~v~~~~~~~---------------~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
++..+.+..+++ .+.+.+++.+|...+.++|.|++.|+++++++
T Consensus 890 ~~~~v~i~~~~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~ 948 (995)
T KOG0432|consen 890 NLELVSISSPAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDK 948 (995)
T ss_pred ccceeEeccCCccccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888765432 34578999999999999999999999988764
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=3.8e-108 Score=958.93 Aligned_cols=557 Identities=39% Similarity=0.673 Sum_probs=477.9
Q ss_pred cchHHHHhhcCCc-eEEEEeeecCCccCCccccCcccccccCcee------EE-EeCCCcCCCCCCceeecCCCCChhhH
Q psy1860 2 QSRLETLFKKEEE-YEILDSFQGSTLKGLQYQPLFPYFKHVTSAF------RV-LTDTYVTEESGTGVVHQAPYFGEDDY 73 (659)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~------pi-~~~~~V~~~~GTG~V~~~Pah~~~D~ 73 (659)
+++++.+.++.+. ++++.+++|++|+|++|.||+. ++.+ || ++++||++++|||+||+|||||++||
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-----~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~ 340 (861)
T TIGR00392 266 KKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY-----DFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDY 340 (861)
T ss_pred HHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC-----ccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHH
Confidence 4567777664333 8999999999999999999996 2345 75 67799999999999999999999999
Q ss_pred HHHHhCCCCCCCCccccccCCCccccCCCc-------cccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCc
Q psy1860 74 RVCLAGGVITRDQEIVCPVDASGCFTAPVS-------HFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTP 146 (659)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~-------~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~ 146 (659)
+++++||| ++++++|++|+|++..+ .|.|+++++|+++|++.|+++|.+++.++++|+||||||||+|
T Consensus 341 ~~~~~~~l-----~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~ 415 (861)
T TIGR00392 341 EIGKKYGL-----EVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTP 415 (861)
T ss_pred HHHHHcCC-----CcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCE
Confidence 99999999 78899999999886654 4889999999999999999999999999999999999999999
Q ss_pred EEEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHH
Q psy1860 147 LIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAE 226 (659)
Q Consensus 147 v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~ 226 (659)
|++++++||||+++++|+++++++++++|+|++. ++++.+||++++||||||||+||||||+|+|++|++.++++++++
T Consensus 416 v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~ 494 (861)
T TIGR00392 416 VIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWG-EGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEE 494 (861)
T ss_pred EEEecCccccEEcHHHHHHHHHHhCCcEEECchH-HHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHH
Confidence 9999999999999999999999999999999998 589999999999999999999999999999999888887888888
Q ss_pred HHHh---hCCccc-cccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeec
Q psy1860 227 LHRL---SGISVE-KDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEG 302 (659)
Q Consensus 227 ~~~~---~~~~~~-~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G 302 (659)
+.+. .|.+.+ .++|++.+|.+.++|++| +.+.|++||||||||||++|++.++||.+ +.+|++|||+|+|++|
T Consensus 495 ~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~--~~~~r~~dvlDvWfdS~~~~~~~~~~~~~-~~~f~~~~P~d~~i~G 571 (861)
T TIGR00392 495 LIELIELKGIDAWFEDLHRDFLDKITLKSGDG--GEYRRVPDVLDVWFDSGSMPYASIHYPFE-NEKFKEVFPADFILEG 571 (861)
T ss_pred HHHHHHHhCCccccccchhhhcCchhccCCCC--cceEEccccccchhhcCcchHHhcCCCCC-cchhhccCCceEEEEe
Confidence 7653 344332 256677777776655443 57999999999999999999999999854 3469999999999999
Q ss_pred cccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCC
Q psy1860 303 IDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNY 382 (659)
Q Consensus 303 ~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~ 382 (659)
+||+||||+++++.++++++..||++|++||||++.+|+|||||+||||+|.+++++| |+|++|||+ ++.
T Consensus 572 ~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~y-GaDalR~~l---------l~~ 641 (861)
T TIGR00392 572 SDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKY-GADILRLYV---------ASS 641 (861)
T ss_pred cchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHc-CHHHHHHHH---------HhC
Confidence 9999999999999999999999999999999999989999999999999999999999 999999999 776
Q ss_pred CCCccccCcccccccCchhhhHHHHH-HHHHHHHHhccc---hhhccccccc---ccCCCChhhHHHHHHHHHHHHHHHH
Q psy1860 383 PDPMEVRGRLCPVHVWEPVHVWSVCL-ILKEKVLLANDA---EEKLSFQYNE---AEGSTNIMDAWIISFSESLIEFVRK 455 (659)
Q Consensus 383 ~~~~~~~~~d~~f~lw~~~~~~~~~~-~~~~l~~l~n~~---~~~~~~~~~~---~~~~~~~~d~~il~~l~~~~~~~~~ 455 (659)
++ ++|.+|+ .+.+..+.+ +.+.++++.... .....+.... ........|+|++++++.+++.+.+
T Consensus 642 -~~----~~D~~fs---~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~ 713 (861)
T TIGR00392 642 -DP----WEDLRFS---DEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNE 713 (861)
T ss_pred -CC----CCCceEC---HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56 8999999 455566543 555553211111 1101122110 0123467899999999999999999
Q ss_pred HHHhcchhhHHHHHHHHHH-HHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhc
Q psy1860 456 EMAAYRLYTVVPRLVLFID-NLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLT 534 (659)
Q Consensus 456 ~~e~~~~~~a~~~l~~f~~-~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~ 534 (659)
+|++|+|+.|++.+++|+. ++++||++.+|+++|.....+..++++.+++.+++.+++||+|||||+||+||+.|+..
T Consensus 714 ~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~- 792 (861)
T TIGR00392 714 ALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG- 792 (861)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc-
Confidence 9999999999999999985 59999999999998876543333478889999999999999999999999999999631
Q ss_pred CCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEEE
Q psy1860 535 GRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVV 592 (659)
Q Consensus 535 ~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~~ 592 (659)
...+||+.+.||.+++.+.|++++..++.++++++.+|++|++.++++++|+....+
T Consensus 793 -~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~i 849 (861)
T TIGR00392 793 -EEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLKELVI 849 (861)
T ss_pred -CCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcCEE
Confidence 124699999999998888899999999999999999999999999999999886544
No 18
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-105 Score=926.98 Aligned_cols=553 Identities=24% Similarity=0.385 Sum_probs=477.2
Q ss_pred CCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCCc
Q psy1860 24 STLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVS 103 (659)
Q Consensus 24 ~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~ 103 (659)
++|+|++|.+|+. ++.+||++++||++++|||+||+||+||++||+++++||| ++++++|++|++++++|
T Consensus 237 ~~l~g~~~~~P~~-----~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l-----~~~~~i~~~G~~~~~~g 306 (800)
T PRK13208 237 KHLVGKTAIVPLF-----GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNL-----PTRIIIDEDGRMTEAAG 306 (800)
T ss_pred HHhcCCEEEcCCC-----CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCC-----CcccccCCCceEecCCc
Confidence 3688999998875 4679999999999999999999999999999999999999 89999999999999999
Q ss_pred cccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecCcccch
Q psy1860 104 HFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEK 183 (659)
Q Consensus 104 ~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~ 183 (659)
+|+|+++++||++|++.|+++|.+.+.++++|+||+|||||+||++++++||||++++|++++++++++++|+|++. ++
T Consensus 307 ~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~P~~~-~~ 385 (800)
T PRK13208 307 KLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHM-RV 385 (800)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEECHHH-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 58
Q ss_pred hhhhhhcCCC-ceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccc-cCCCCCCCCCccc
Q psy1860 184 RFGNWLREAR-DWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVT-IPSVRPGKPPLRR 261 (659)
Q Consensus 184 ~~~~~l~~l~-Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~g~~~~~~ 261 (659)
++.+||++++ ||||||||+||||||+|+|++|+.+++. ....++ +.+..|... ..|..||...++|
T Consensus 386 ~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~-~~~~l~-----------~~~~~d~~~~~~~~~~g~~~~~~ 453 (800)
T PRK13208 386 RLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILP-DEEDLP-----------VDPTKDEPPGYKCPQCGSPGFEG 453 (800)
T ss_pred HHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecC-chhhhc-----------cCchhhccccccccccCCcCEEe
Confidence 9999999987 9999999999999999999998876542 111110 111111110 1122235557999
Q ss_pred cccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCC
Q psy1860 262 VPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQ 341 (659)
Q Consensus 262 ~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~ 341 (659)
++||||||||||++|++.++||. ++++|++|||+|++++|+||++|||+++++++.++++..||++|++||++++.+|+
T Consensus 454 ~~dvlD~WfdS~~~~~~~~~~~~-~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~ 532 (800)
T PRK13208 454 ETDVMDTWATSSITPLIVTGWER-DEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGK 532 (800)
T ss_pred cCCEEEEEEeCCchHHHHhCCCC-ChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCC
Confidence 99999999999999999999985 34679999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccch
Q psy1860 342 KMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAE 421 (659)
Q Consensus 342 KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~ 421 (659)
|||||+||+|+|.+++++| |+|++|||+ + .+++ ++|.+|+ .+.+.+.++++++++++.+...
T Consensus 533 KMSKS~GN~i~p~~~i~~y-g~D~lR~~l---------~-~~~~----~~d~~fs---~~~~~~~~~~l~kl~N~~r~~~ 594 (800)
T PRK13208 533 KMSKSKGNVVTPEELLEKY-GADAVRYWA---------A-SARL----GSDTPFD---EKQVKIGRRLLTKLWNASRFVL 594 (800)
T ss_pred CCCCCCCCCCCHHHHHHHc-CccHHHHHH---------h-cCCC----CCCceec---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999 7 5455 8999999 5677888899998865543221
Q ss_pred hhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HHHHHHHHHccccccCCCChHhHHHH
Q psy1860 422 EKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFID-NLTNWYVRMNRRRLKGEGGPADCKVA 500 (659)
Q Consensus 422 ~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~-~~~~~Yle~~K~~l~~~~~~~~~~~~ 500 (659)
.................|+|++++++.+++.+.++|++|+|+.|++.+++|++ ++||||++.+|+|++.+...+.+..+
T Consensus 595 ~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~ 674 (800)
T PRK13208 595 HFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSA 674 (800)
T ss_pred hcccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHH
Confidence 10000000001235678999999999999999999999999999999999985 69999999999998765443336678
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1860 501 LNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVT 580 (659)
Q Consensus 501 ~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~ 580 (659)
+.+++++++.+++||+|||||+||+||+.|+ .+||+.+.||.+++...+++++..++.++.+++.+|++|++.+
T Consensus 675 ~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~------~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~r~~~~ 748 (800)
T PRK13208 675 RYTLYTVLDTLLRLLAPFLPFITEEVWSWLY------GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEAG 748 (800)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhCC------CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999995 3599999999998878888899999999999999999999999
Q ss_pred CCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeCCc
Q psy1860 581 IPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQ 626 (659)
Q Consensus 581 i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~ 626 (659)
++.+.|+...++ ..+.+ .+.++.+.+.|+.++|++++.+..+..
T Consensus 749 i~~~~~l~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~~~ 792 (800)
T PRK13208 749 LSLNAPLKKVEV-YGPAD-LELLEAAEEDLKAAGNIEELELVEGDP 792 (800)
T ss_pred CCcCCccceEEE-ecchH-HHHHHHHHHHHHHHhCcCeEEEecCCC
Confidence 999999876544 34455 778888999999999999999865543
No 19
>KOG0433|consensus
Probab=100.00 E-value=5.2e-101 Score=808.59 Aligned_cols=507 Identities=26% Similarity=0.440 Sum_probs=426.5
Q ss_pred hHHHHhh-cCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCC
Q psy1860 4 RLETLFK-KEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVI 82 (659)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~ 82 (659)
+++.+-. ....++|+++++|.+|.|.+|+||+. .+...|++.++||+++.|||+||+|||||++||.+|-++||
T Consensus 287 L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~----~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l- 361 (937)
T KOG0433|consen 287 LLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLH----NELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGL- 361 (937)
T ss_pred hhhhhhhhcCcceeeeeecchhhccCceecCcCc----cccCCccccccceecCcccceeecCCCCChHHHHHHhhcCC-
Confidence 4445433 23468899999999999999999974 24578999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCccccCCCc-cccCcccc-cCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeech
Q psy1860 83 TRDQEIVCPVDASGCFTAPVS-HFLGLYVK-DADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQ 160 (659)
Q Consensus 83 ~~~~~~~~~vd~~G~~~~~~~-~~~g~~v~-~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~ 160 (659)
++.|+||+.|+|+.+++ .+.|+.|. |..+.|+..|. ..+++.++|+|+||++|||++|+|+|+++|||++++
T Consensus 362 ----~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e 435 (937)
T KOG0433|consen 362 ----RVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVE 435 (937)
T ss_pred ----CcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHH
Confidence 89999999999999887 78999996 57788888888 678899999999999999999999999999999999
Q ss_pred HhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEE-EeccHHHHH---HhhCCccc
Q psy1860 161 HMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIV-CVGSIAELH---RLSGISVE 236 (659)
Q Consensus 161 ~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i-~~~~~~~~~---~~~~~~~~ 236 (659)
++|..+.+++++++|+|... .+++..++..+++|||||||.||+|||++|..+++.++ ....++++. +..|.+.|
T Consensus 436 ~~k~~A~~al~~Vk~~P~~~-~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~W 514 (937)
T KOG0433|consen 436 EIKKRASMALDDVKVAPGDS-DLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVW 514 (937)
T ss_pred hhhhHHHHHHhhceeCCcch-HHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcce
Confidence 99999999999999999987 47999999999999999999999999999987665543 344444444 44555544
Q ss_pred cccccccccccccCCCC-----CCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHH
Q psy1860 237 KDLHRESVDSVTIPSVR-----PGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFY 311 (659)
Q Consensus 237 ~~~~~~~~d~~~~~~~~-----~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~ 311 (659)
|...++++ +|... .-..++.+.+|+||||||||++|.++++. ..-.++|++++|.||+||||+
T Consensus 515 ---w~~~~eel-lpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~--------~~~~~aDv~LEG~DQ~rGWFQ 582 (937)
T KOG0433|consen 515 ---WEIDVEEL-LPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDN--------EREHVADVYLEGVDQFRGWFQ 582 (937)
T ss_pred ---EeCChhHh-CcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCC--------CCCcceeeEEecchhcchHHH
Confidence 22222222 22211 12346889999999999999988877742 233579999999999999999
Q ss_pred HHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc------CCCchhhhhhcccccccccccCCCCC
Q psy1860 312 TLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK------NLIANGLVLSSDGQKMSKSKKNYPDP 385 (659)
Q Consensus 312 ~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~------y~gaD~lR~~l~~~~msk~~~~~~~~ 385 (659)
+++|+++|..+++||+.|++|||++|++|.|||||+||||+|..++++ | |||+||||+ +.+ +.
T Consensus 583 SsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~pay-GaD~LR~WV---------A~~-~~ 651 (937)
T KOG0433|consen 583 SSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAY-GADGLRFWV---------AGS-EN 651 (937)
T ss_pred HHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCc-cccceeeee---------ecc-cc
Confidence 999999999999999999999999999999999999999999999998 9 999999999 433 22
Q ss_pred ccccCcccccccCchhhhHHHHHHHHHH-----HHHhccchhhccccccc---ccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy1860 386 MEVRGRLCPVHVWEPVHVWSVCLILKEK-----VLLANDAEEKLSFQYNE---AEGSTNIMDAWIISFSESLIEFVRKEM 457 (659)
Q Consensus 386 ~~~~~~d~~f~lw~~~~~~~~~~~~~~l-----~~l~n~~~~~~~~~~~~---~~~~~~~~d~~il~~l~~~~~~~~~~~ 457 (659)
..|+... +..+..+.+.+.++ |+++|+.+. .... +...+..+|++++.+++++++++++.|
T Consensus 652 ----t~d~~iG---p~il~qv~e~l~K~R~T~RfllGnl~d~----~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y 720 (937)
T KOG0433|consen 652 ----TGESKIG---PKILDQVDEKLIKFRNTFRFLLGNLQDF----DGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY 720 (937)
T ss_pred ----cCceecC---HHHHHHHHHHHHHHHhHHHHHhhccccc----CCccccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5677776 67777777766665 788987652 2221 134567789999999999999999999
Q ss_pred HhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCC-ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcC
Q psy1860 458 AAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEG-GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTG 535 (659)
Q Consensus 458 e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~ 535 (659)
++|+|+++++.+..|+ ++++++|++++|+|||++. ++..+++++.+|.+++..+++.++||+||++||+||+|+.
T Consensus 721 ~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~--- 797 (937)
T KOG0433|consen 721 NDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPG--- 797 (937)
T ss_pred HhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCC---
Confidence 9999999999999998 6899999999999999985 3456899999999999999999999999999999999982
Q ss_pred CCCCCceeccCCCCCCCCCCHHHHH
Q psy1860 536 RLERSIHFIMMPQPNRGIIDQEIER 560 (659)
Q Consensus 536 ~~~~sv~~~~~P~~~~~~~d~~~e~ 560 (659)
+..+ ++...||.....+.....+.
T Consensus 798 ~~~~-~f~~k~~~l~s~~~~~~~~~ 821 (937)
T KOG0433|consen 798 SHEK-IFRLKWEDLHSGLLTPHDQL 821 (937)
T ss_pred CCCc-ccccCccccchhhcCchhHH
Confidence 2223 77789999888776654433
No 20
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-99 Score=880.60 Aligned_cols=575 Identities=23% Similarity=0.284 Sum_probs=473.4
Q ss_pred chHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCC--
Q psy1860 3 SRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGG-- 80 (659)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~-- 80 (659)
++++.+..+.++++++++++|++|+|++|.||+. ++.+||++++||++++|||+||+|||||++||+++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~-----~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~ 285 (897)
T PRK12300 211 EAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVT-----GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKN 285 (897)
T ss_pred HHHHHHhcCcCCceEEEEeehHHhcCCEEECCCC-----CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccc
Confidence 4555655565679999999999999999999996 458999999999999999999999999999999999997
Q ss_pred ------CCCC-----CC-------------ccccccC---------------CCccccCCCccccCcccccCchHHHHHH
Q psy1860 81 ------VITR-----DQ-------------EIVCPVD---------------ASGCFTAPVSHFLGLYVKDADKPIIKHL 121 (659)
Q Consensus 81 ------l~~~-----~~-------------~~~~~vd---------------~~G~~~~~~~~~~g~~v~~a~~~ii~~L 121 (659)
|... ++ .+.+++| ++|+|++.+|+|+|++|+||+++|++.|
T Consensus 286 ~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L 365 (897)
T PRK12300 286 KELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDL 365 (897)
T ss_pred cccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHH
Confidence 4110 00 0112335 5899998889999999999999999999
Q ss_pred HhcCCEeEeecccccCCccccCCCcEEEcc-cCceeeech--HhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEee
Q psy1860 122 KEQSRLVSAGSVKHSYPFCWRSDTPLIYKA-VPSWFIRVQ--HMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAIS 198 (659)
Q Consensus 122 ~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~-~~qwFi~~~--~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~IS 198 (659)
+++|.+++.++++| +|+|||||+||++++ ++||||+++ +||+++++++++++|+|++. ++++.+||++++|||||
T Consensus 366 ~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~-~~~~~~~l~~l~DW~IS 443 (897)
T PRK12300 366 IEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEY-RKEFENTIDWLKDRACA 443 (897)
T ss_pred HHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHHH-HHHHHHHHhhhhhccee
Confidence 99999999888888 788889999999987 599999998 79999999999999999998 48999999999999999
Q ss_pred eccCCCccccE---EEeCCCCe-EEEe--ccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccC
Q psy1860 199 RNRYWGTPIPL---WVSDDGEE-IVCV--GSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFES 272 (659)
Q Consensus 199 Rqr~WG~piP~---~~~~~~~~-~i~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS 272 (659)
|||+||||||+ |.|+++++ ++|+ +++++..+..|.+.. ++|.+.+|++++.+ .+.+++|++|
T Consensus 444 Rqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~~g~~~~-~l~~~~~D~~~~~~-----------~~~~~~~~~s 511 (897)
T PRK12300 444 RRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIKPE-QLTPEFFDYVFLGK-----------GDPEEVSKKT 511 (897)
T ss_pred eccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHHcCCChH-HCChhhCceEEeCC-----------CccccCchhc
Confidence 99999999997 88876543 5553 455544444455444 77888888876421 2467899999
Q ss_pred CCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceeecCCCCccccCCCCCC
Q psy1860 273 GSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVLAQDGQKMSKSKRNYP 351 (659)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~~~~G~KMSKS~GN~i 351 (659)
|+ |...++ +++++|++|||+|+|++|+||++||++.+++++.++++..|| ++|++||||++ +|+|||||+||+|
T Consensus 512 g~-p~~~~~---~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvV 586 (897)
T PRK12300 512 GI-PKEILE---EMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVI 586 (897)
T ss_pred CC-CHHHHH---HHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCC
Confidence 94 665554 345679999999999999999999988889999999998888 99999999999 9999999999999
Q ss_pred CCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccc
Q psy1860 352 DPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEA 431 (659)
Q Consensus 352 ~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~ 431 (659)
+|.+++++| |||++|||+ ++++++ ++|.+|+ .+.+.++.+++++++.+..... .+..
T Consensus 587 dp~eii~~y-GaDalRl~L---------~~~~~~----~~D~~fs---~~~v~~~~~~l~r~~~~~~~~~---~~~~--- 643 (897)
T PRK12300 587 PLRKAIEEY-GADVVRLYL---------TSSAEL----LQDADWR---EKEVESVRRQLERFYELAKELI---EIGG--- 643 (897)
T ss_pred CHHHHHHHc-ChHHHHHHH---------HhCCCC----CCCCccC---HHHHHHHHHHHHHHHHHHHHHh---cCCC---
Confidence 999999999 999999999 777666 8999999 6778888888888754432111 1111
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHH
Q psy1860 432 EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTM 511 (659)
Q Consensus 432 ~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~ 511 (659)
.......|+|++++++++++.++++|++|+|+.|+++++.|+...++||++.+++ .++.+++++++.+
T Consensus 644 ~~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~------------~~~~~l~~~l~~~ 711 (897)
T PRK12300 644 EEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVGE------------ANNKVLREVLEIW 711 (897)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcch------------HHHHHHHHHHHHH
Confidence 1134678999999999999999999999999999999876664447999987654 4667899999999
Q ss_pred HHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeEE
Q psy1860 512 VRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAV 591 (659)
Q Consensus 512 ~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~~~ 591 (659)
++||+|||||+||+||+.|+ ..+|||.+.||.+++.++|++++..++.++.+++.+|++|+..+++++ .++
T Consensus 712 ~~lLaPf~P~~aEeiw~~L~-----~~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~ir~~~~~~~~~~~----~~~ 782 (897)
T PRK12300 712 IRLLAPFTPHLAEELWHKLG-----GEGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDIREILKVAKIKPK----KVY 782 (897)
T ss_pred HHHHhhhhhHHHHHHHHHcC-----CCCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCc----eEE
Confidence 99999999999999999995 357999999999998889999999999999999999999999887542 233
Q ss_pred EEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeCCceeEEEecccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 592 VIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 592 ~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~~~~v~l~~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
+...++... ...++|.+..|++++.. .+...++++..++++++.++++.++++.
T Consensus 783 i~~~~~~~~----~~~~~~~~~~n~k~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (897)
T PRK12300 783 IYVAPDWKY----EVLEIAAENGDVKEAIK---------ELMKDEELRKHGKEVAKLAQKIVKEVLK 836 (897)
T ss_pred EEECCHHHH----HHHHHHHHhhcHHHHHH---------HHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 333343222 22455666667765542 3456778999999999999999888754
No 21
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=2e-92 Score=829.78 Aligned_cols=504 Identities=20% Similarity=0.246 Sum_probs=397.5
Q ss_pred CceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHH----------HHhCCCC
Q psy1860 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRV----------CLAGGVI 82 (659)
Q Consensus 13 ~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~~l~ 82 (659)
++++++.+++|++|+|++|.+|+.. ...+||+++.||++++|||+||+|||||++||.+ +++|||.
T Consensus 350 ~~~~~l~~~~G~~L~G~~~~~Pl~~----~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~ 425 (1084)
T PLN02959 350 GKPTCLVELTGYDLIGLPLKSPLAF----NEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVK 425 (1084)
T ss_pred CCcEEEEEEEHHHhCCCEEECCCCC----CcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCC
Confidence 4799999999999999999999852 1238999999999999999999999999999998 5778884
Q ss_pred CC---CCccccccCCCcc----------------------------------ccCC---CccccCcccccCchHHHHHHH
Q psy1860 83 TR---DQEIVCPVDASGC----------------------------------FTAP---VSHFLGLYVKDADKPIIKHLK 122 (659)
Q Consensus 83 ~~---~~~~~~~vd~~G~----------------------------------~~~~---~~~~~g~~v~~a~~~ii~~L~ 122 (659)
.+ +.++++++|.+|. |++. +|+|.|+.|+|||++|+++|+
T Consensus 426 ~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~ 505 (1084)
T PLN02959 426 DEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLI 505 (1084)
T ss_pred cccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHH
Confidence 21 1134566676553 4444 589999999999999999999
Q ss_pred hcCCEeE-eecccccCCccccCCCcEEEcccCceeeech--HhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeee
Q psy1860 123 EQSRLVS-AGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQ--HMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISR 199 (659)
Q Consensus 123 ~~g~l~~-~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~--~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISR 199 (659)
++|+++. .++ ..|+|+|||+||++++++||||+++ +||+++++++++++|+|++.+ +++.+||++++||||||
T Consensus 506 ~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~-~~~~~wl~~l~DWciSR 581 (1084)
T PLN02959 506 EAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETR-HGFEHTLGWLNQWACSR 581 (1084)
T ss_pred hCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHH-HHHHHHHhCCCceeecc
Confidence 9998875 343 3689999999999999999999998 799999999999999999984 78999999999999999
Q ss_pred ccCCCccccE---EEeCCCC-eEEE--eccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCC
Q psy1860 200 NRYWGTPIPL---WVSDDGE-EIVC--VGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESG 273 (659)
Q Consensus 200 qr~WG~piP~---~~~~~~~-~~i~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~ 273 (659)
||+||||||| |++++.+ .++| +++++++.+.....+. +.+ .+ ..-..++||||+||+||
T Consensus 582 Qr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~-~~~--~i------------~~~~~~~dV~D~wF~Sg 646 (1084)
T PLN02959 582 SFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGK-DKS--SI------------KPEQMTDEVWDFVFCGG 646 (1084)
T ss_pred cccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccCC-ccc--cC------------ChhhcCccceeEeecCC
Confidence 9999999994 3344322 2443 4667776654322221 100 00 01122689999999999
Q ss_pred CCccccccCCCC----CcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceeecCCCCccccCCC
Q psy1860 274 SMPYAQLHFPFD----NRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVLAQDGQKMSKSKR 348 (659)
Q Consensus 274 ~~~~~~~~~~~~----~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~~~~G~KMSKS~G 348 (659)
.+|+++ +||.+ ++++|++|||+|++++|+||++|||.++++++++++++.|| ++|++||||+ .+|+|||||+|
T Consensus 647 ~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSKSkG 724 (1084)
T PLN02959 647 PLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSKSTG 724 (1084)
T ss_pred Cccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccccCC
Confidence 999877 78753 25789999999999999999999999999999999999999 7899999999 59999999999
Q ss_pred CCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHH--HHHhccchhhccc
Q psy1860 349 NYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEK--VLLANDAEEKLSF 426 (659)
Q Consensus 349 N~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l--~~l~n~~~~~~~~ 426 (659)
|||+|.+++++| |||++|||+ ++++++ .+|.+|+ + +.....+..++.. |...++.. ...+
T Consensus 725 NvI~p~diI~ky-GADalRl~l---------a~~~~~----~~D~nF~--~-k~~n~~~~~l~n~~~~~~~~~~~-~~~~ 786 (1084)
T PLN02959 725 NFLTLRQAIEEF-SADATRFAL---------ADAGDG----VDDANFV--F-ETANAAILRLTKEIAWMEEVLAA-ESSL 786 (1084)
T ss_pred CcCCHHHHHHHh-CchHHHHHH---------hhcCCc----cCCCCcc--H-HHHHHHHHHHHHHHHHHHHhhhh-hccc
Confidence 999999999999 999999999 776555 7899998 3 3333332222221 21121110 0011
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH-HHHccc--cccCCCChHhHHHHHHH
Q psy1860 427 QYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWY-VRMNRR--RLKGEGGPADCKVALNS 503 (659)
Q Consensus 427 ~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Y-le~~K~--~l~~~~~~~~~~~~~~~ 503 (659)
.. .......|+|++++++.+++.++++|++|+|+.|++.. || ++..|+ |++++.. ..++.+
T Consensus 787 ~~---~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~---------~Yel~~~k~~yr~~~~~~----~~~~~~ 850 (1084)
T PLN02959 787 RT---GPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSG---------FYDLQAARDEYRLSCGSG----GMNRDL 850 (1084)
T ss_pred CC---cccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH---------HHHHHHhHHHHhhccccc----hHHHHH
Confidence 10 12346789999999999999999999999999999864 23 333333 4444321 145678
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1860 504 LTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTI 581 (659)
Q Consensus 504 l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i 581 (659)
+++++..+++||||||||+|||||+.|. +..+||+.+.||.+.. .|++++..++.++.+++.+|++++....
T Consensus 851 L~~vl~~~l~LLaP~~PfiaEEiW~~l~----~~~~sI~~~~wP~~~~--~d~~~e~~~~~l~~~i~~iR~~~~~~~~ 922 (1084)
T PLN02959 851 VWRFMDVQTRLITPICPHYAEHVWREIL----KKEGFAVTAGWPVAGE--PDLTLKRANKYLQDSIVSFRKLLQKQLA 922 (1084)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhcc----CCCCeEEecCCCCCCc--cCHHHHHHHHHHHHHHHHHHHhHHHhch
Confidence 9999999999999999999999999994 2356999999998763 5888888899999999999999876443
No 22
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=3.5e-89 Score=797.73 Aligned_cols=515 Identities=21% Similarity=0.316 Sum_probs=408.7
Q ss_pred chHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHh----
Q psy1860 3 SRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLA---- 78 (659)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~---- 78 (659)
++++.+..|..+++++++++|++|+|++|.||+. ++.+||++++||++++|||+||+|||||++||.++++
T Consensus 251 ~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~-----~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~ 325 (938)
T TIGR00395 251 EAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVV-----GPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHD 325 (938)
T ss_pred HHHHhhhhcccceeEEEEEchHhccCCEEECCCC-----CCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhc
Confidence 3455555565668999999999999999999985 4689999999999999999999999999999999886
Q ss_pred ---CCCCCC--CCcccc--ccCC-------------------------------------CccccCCCccccCcccccCc
Q psy1860 79 ---GGVITR--DQEIVC--PVDA-------------------------------------SGCFTAPVSHFLGLYVKDAD 114 (659)
Q Consensus 79 ---~~l~~~--~~~~~~--~vd~-------------------------------------~G~~~~~~~~~~g~~v~~a~ 114 (659)
|||... +.+++. .+|. +|++++.+++|+|++|+|||
T Consensus 326 ~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear 405 (938)
T TIGR00395 326 PEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAK 405 (938)
T ss_pred chhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhH
Confidence 333110 001111 1222 57777777899999999999
Q ss_pred hHHHHHHHhcCCEeEeecccccCCccccCCCcEEEc-ccCceeeech--HhHHHHHHhcCCceEecCcccchhhhhhhcC
Q psy1860 115 KPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYK-AVPSWFIRVQ--HMNQDLLKCNSDTYWVPEFVKEKRFGNWLRE 191 (659)
Q Consensus 115 ~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~-~~~qwFi~~~--~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~ 191 (659)
++|+++|+++|.+++.+++.| +|+|||||+||+++ +++||||+++ +||+++++++++++|+|+.. ++++.+||++
T Consensus 406 ~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~-~~~~~~~l~~ 483 (938)
T TIGR00395 406 EKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEV-KNAFEGKIDW 483 (938)
T ss_pred HHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHH-HHHHHHHHhh
Confidence 999999999999998776644 68899999999998 9999999999 69999999999999999998 4899999999
Q ss_pred CCceEeeeccCCCccccE---EEeCCCC-eEEEec--cHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccc
Q psy1860 192 ARDWAISRNRYWGTPIPL---WVSDDGE-EIVCVG--SIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEV 265 (659)
Q Consensus 192 l~Dw~ISRqr~WG~piP~---~~~~~~~-~~i~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dv 265 (659)
++||||||||+||||||+ |++++.+ .++|++ +++++....+. + ......++
T Consensus 484 l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~---------------------~--~~~l~~ev 540 (938)
T TIGR00395 484 LKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYY---------------------G--NEQMTDEF 540 (938)
T ss_pred hhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCC---------------------C--hHHCCccc
Confidence 999999999999999997 6666433 356543 34443322111 1 11124567
Q ss_pred cceeccCCCCccccccCCC----CCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceeecCCC
Q psy1860 266 FDCWFESGSMPYAQLHFPF----DNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVLAQDG 340 (659)
Q Consensus 266 lDvWfdS~~~~~~~~~~~~----~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~~~~G 340 (659)
+|+||.++..+ ...++|. ..+++|++|||+|+|++|+||++||.+..++++.++++..|| ++|++||||++ +|
T Consensus 541 ~D~~~~~~~~~-~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G 618 (938)
T TIGR00395 541 FDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EG 618 (938)
T ss_pred CceEEECCCCh-hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CC
Confidence 88888754332 2234432 124679999999999999999999988888999999888777 99999999998 99
Q ss_pred CccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccc
Q psy1860 341 QKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDA 420 (659)
Q Consensus 341 ~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~ 420 (659)
+|||||+||+|+|.+++++| |||++|||| ++++++ ++|.+|+ .+.+.+..+++++++++.+..
T Consensus 619 ~KMSKSlGNvI~p~d~i~~y-GaDalRl~L---------l~~~~~----~~D~~fs---~~~~~~~~~~l~~l~n~~~~~ 681 (938)
T TIGR00395 619 KKMSKSKGNVLTLEQAVEKF-GADVARLYI---------ADAAET----VQDADWK---ESEVEGTILRLERLYEFAEEI 681 (938)
T ss_pred ccccCcCCCCCCHHHHHHHc-ChHHHHHHH---------HhcCCC----CCCCCcC---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999 777666 8999999 566666666666653332211
Q ss_pred hhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHHHHHHHHccccccCCCChHhHHH
Q psy1860 421 EEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVV-PRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKV 499 (659)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~-~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~ 499 (659)
.. ...... ....+..|+|++++++.+++.++++|++|+|+.|+ ..+++|++. ++||++..+.+
T Consensus 682 ~~--~~~~~~-~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~-~n~Yl~~~~~~------------ 745 (938)
T TIGR00395 682 TK--ESNLET-GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD-VDWYRRRGGVN------------ 745 (938)
T ss_pred Hh--hcccCC-CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHhCcch------------
Confidence 10 011110 11346789999999999999999999999999999 668898766 89998753221
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1860 500 ALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERV 579 (659)
Q Consensus 500 ~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~ 579 (659)
...+++++++.+++||+|||||+||+||+.|+ ..+||+.+.||.+++.++|++++..++.++.+++.+| +..
T Consensus 746 ~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg-----~~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR---~~~ 817 (938)
T TIGR00395 746 HKDVLARYLETWIKLLAPFAPHFAEEMWEEVG-----NEGFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQ---EIA 817 (938)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcC-----CCCeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHH---Hhh
Confidence 12368899999999999999999999999995 3579999999999988889999999998888775554 467
Q ss_pred CCCCCCCceeE
Q psy1860 580 TIPIKYPLREA 590 (659)
Q Consensus 580 ~i~~~~pl~~~ 590 (659)
++..+.|....
T Consensus 818 ~~~~~~p~~~~ 828 (938)
T TIGR00395 818 KIDASKPKRVY 828 (938)
T ss_pred ccCCCCCcEEE
Confidence 88888887644
No 23
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=7.6e-88 Score=756.45 Aligned_cols=363 Identities=39% Similarity=0.699 Sum_probs=304.8
Q ss_pred cchHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCC
Q psy1860 2 QSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGV 81 (659)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l 81 (659)
+++++.++++.+.. +++++|++|+|++|.||+. ++.+|||+++||++++|||+||+|||||++||+++++|++
T Consensus 237 ~~~~~~~~~~~~~~--~~~~~g~~L~g~~~~~P~~-----~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l 309 (601)
T PF00133_consen 237 KDLVEKLSKQEKTK--LEDFRGKELVGLKYIHPLT-----GREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNL 309 (601)
T ss_dssp HHHHHHHHTTTSSS--EEEEECHHHTTSEEE-TTS-----SSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhc--ccccCcceecCcEeccccc-----cceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCc
Confidence 46778888764433 8999999999999999995 4689999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechH
Q psy1860 82 ITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQH 161 (659)
Q Consensus 82 ~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~ 161 (659)
++++++|++|++++.+++|.|++|++||++|++.|+++|++++.++++|+||+|||||+||++++++||||++++
T Consensus 310 -----~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~ 384 (601)
T PF00133_consen 310 -----PIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDD 384 (601)
T ss_dssp -----CCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHH
T ss_pred -----eeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHH-hhCCccc-ccc
Q psy1860 162 MNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHR-LSGISVE-KDL 239 (659)
Q Consensus 162 ~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~ 239 (659)
|++++++++++++|+|+.. ++++.+||++++||||||||+||||||+|+|++++..........+.. .....+. ..+
T Consensus 385 ~k~~~l~~~~~i~~~P~~~-~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (601)
T PF00133_consen 385 WKKKALEALEKIKFYPESY-RKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWL 463 (601)
T ss_dssp HHHHHHHHHHTSEESSSTC-HHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTS
T ss_pred hHHHHHhhcccceEEcccc-hhhhhhhccccccchhhccCCCCccceeeecccCcccccccccccccccccccccccccc
Confidence 9999999999999999997 589999999999999999999999999999999887654332222211 1100000 122
Q ss_pred ccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhh
Q psy1860 240 HRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTA 319 (659)
Q Consensus 240 ~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~ 319 (659)
+.+..|.+ + + ++..++|++||||||||||++|++.++||.+++++|++|||+|++++|+||+||||+++++++++
T Consensus 464 ~~~~~~~~--~--~-~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~ 538 (601)
T PF00133_consen 464 HKPAEDKL--P--C-CGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVA 538 (601)
T ss_dssp SHHHHHHH--T--T-TSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHH
T ss_pred cccccccc--c--c-cccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccc
Confidence 33333333 2 2 34678999999999999999999999999777889999999999999999999999999999999
Q ss_pred hcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccc
Q psy1860 320 LFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVH 396 (659)
Q Consensus 320 ~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~ 396 (659)
++++.||++|++||||+|++|+|||||+||||+|.+++++| |||++|+|+ +.++++ ++|++||
T Consensus 539 l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~y-GaD~lRl~~---------~~~~~~----~~D~~~s 601 (601)
T PF00133_consen 539 LFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKY-GADALRLWL---------ASSADP----GQDINFS 601 (601)
T ss_dssp HSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT--HHHHHHHH---------HHHS-T----TS-EEE-
T ss_pred cccCCchheeeecccccccceeecccCCCcccCHHHHHHHh-CcHHHHHHH---------HhcCCc----ccCcccC
Confidence 99999999999999999999999999999999999999999 999999999 755566 8998885
No 24
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.3e-79 Score=700.88 Aligned_cols=442 Identities=24% Similarity=0.327 Sum_probs=338.4
Q ss_pred eEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCC
Q psy1860 15 YEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDA 94 (659)
Q Consensus 15 ~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~ 94 (659)
++++++++|. |+|.+|.||+. ++.+||+.++||++++|||+||+|||||++||++|++||| ++++++|.
T Consensus 293 ~~~~~~~~g~-l~g~~~~~P~~-----~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L-----~~~~~i~~ 361 (805)
T PRK00390 293 QTETKEKTGV-FTGLYAIHPLT-----GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGL-----PIKPVIEP 361 (805)
T ss_pred hhcccceeee-ecCcEEECCCC-----CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCC-----CceeeeCC
Confidence 4556789997 99999999996 4689999999999999999999999999999999999999 77888875
Q ss_pred C--------------ccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeech
Q psy1860 95 S--------------GCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQ 160 (659)
Q Consensus 95 ~--------------G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~ 160 (659)
+ |++++. +.|+|+++++|+++|++.|+++|++. .++.+
T Consensus 362 ~g~~~~~~~~~~~~~g~~~~~-~~~~Gl~~~~a~~~Ii~~L~~~g~~~----------------~~v~~----------- 413 (805)
T PRK00390 362 GDGDEDISEEAYTGDGVLINS-GELDGLDSEEAKEAIIAWLEEKGLGK----------------RKVNY----------- 413 (805)
T ss_pred CCcccccccccccCCeEEEec-cccCCCCHHHHHHHHHHHHHHcCCCC----------------CceEE-----------
Confidence 4 444432 78999999999999999999999831 12211
Q ss_pred HhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEecc--HHHHHHh---hCCcc
Q psy1860 161 HMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGS--IAELHRL---SGISV 235 (659)
Q Consensus 161 ~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~--~~~~~~~---~~~~~ 235 (659)
+++||||||||+||+|||+|+|++|+.+.+... ..++++. .|...
T Consensus 414 ------------------------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~ 463 (805)
T PRK00390 414 ------------------------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGS 463 (805)
T ss_pred ------------------------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCC
Confidence 367999999999999999999988875443211 1111211 12111
Q ss_pred ccccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCC-----CcccccccCCcceEeeccccchhHH
Q psy1860 236 EKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFD-----NRRDFDDRFPADFIAEGIDQTRGWF 310 (659)
Q Consensus 236 ~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~-----~~~~~~~~~p~d~~~~G~D~~~~w~ 310 (659)
+.+.+.++++ ..|| .|| +.++|++|||||||||+ ||++...+|.. ++++|++|||+|+|++|+||+..|+
T Consensus 464 ~~~~~~~~~~-~~~~--~~g-~~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL 538 (805)
T PRK00390 464 PLAKHPEWVN-VTCP--KCG-KPARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHL 538 (805)
T ss_pred hhhhchhhhC-CCcc--ccC-CCceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHH
Confidence 1122333433 2232 234 47999999999999997 77777777632 2567899999999999999985543
Q ss_pred H-----HHHHHHhh-hcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCC
Q psy1860 311 Y-----TLLVISTA-LFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPD 384 (659)
Q Consensus 311 ~-----~~ll~~~~-~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~ 384 (659)
+ .++|...+ +.+++||++|++|||| |||||+||+|+|.+++++| |||++|||+ +..++
T Consensus 539 ~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~y-gaD~lRl~l---------~~~~~ 602 (805)
T PRK00390 539 LYARFFTKVLRDLGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEKY-GADTARLFE---------MFAGP 602 (805)
T ss_pred HHHHHHHHHHHHhhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHHc-ChHHHHHHH---------HhcCC
Confidence 2 23344333 4578999999999999 9999999999999999999 999999999 76655
Q ss_pred CccccCcccccccCchhhhHHHHHHHHHHHHHhccc-hhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchh
Q psy1860 385 PMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDA-EEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLY 463 (659)
Q Consensus 385 ~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~-~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~ 463 (659)
+ ++|.+|+ ++.++++++++++++...... .....+ .......|+|+++++++++++++++|++|+|+
T Consensus 603 ~----~~d~~~s---~~~l~~~~~~l~kl~~~~~~~~~~~~~~-----~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~ 670 (805)
T PRK00390 603 P----EKDLEWS---DSGVEGAYRFLQRVWRLVVDAKGEAGAL-----DVAALSEDKELRRKLHKTIKKVTEDIERLRFN 670 (805)
T ss_pred c----cCCcccC---HHHHHHHHHHHHHHHHHHHHhhhccccc-----CcccChhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 6 8999999 688899999999985433221 100011 11234689999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCcee
Q psy1860 464 TVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHF 543 (659)
Q Consensus 464 ~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~ 543 (659)
+|++.+++|+++++.+| + ..+..+++++++.+++||+|||||+|||+|+.|+ ..+||+.
T Consensus 671 ~ai~~l~~f~n~lsk~~-~---------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~-----~~~sv~~ 729 (805)
T PRK00390 671 TAIAALMELVNALYKAE-D---------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLG-----HEGSIAN 729 (805)
T ss_pred HHHHHHHHHHHHHHHHH-H---------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcC-----CCCeeEe
Confidence 99999999998887766 1 2345688999999999999999999999999995 3569999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy1860 544 IMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKY 585 (659)
Q Consensus 544 ~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~~~~ 585 (659)
+.||.+++..+.+ . .+..++++++++|+...++.+.
T Consensus 730 ~~wP~~~~~~~~~---~---~~~~~iqingk~r~~i~v~~~~ 765 (805)
T PRK00390 730 APWPTADEAALVE---D---EVTIVVQVNGKVRGKIEVPADA 765 (805)
T ss_pred cCCCCCCHHHhhh---h---ccEEEEEEccceeEEEEeCCCC
Confidence 9999877654421 1 2233456677777766655443
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=5.2e-79 Score=702.95 Aligned_cols=447 Identities=21% Similarity=0.295 Sum_probs=337.0
Q ss_pred EEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccC--
Q psy1860 16 EILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVD-- 93 (659)
Q Consensus 16 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd-- 93 (659)
.++.+++|.+|.|.+|.||+. ++.+||++++||++++|||+||+|||||++||++|++||| ++.+++|
T Consensus 291 ~~~~~~~~g~~~g~~~~~P~~-----~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L-----~i~~vi~~~ 360 (842)
T TIGR00396 291 TKETKLKKGVFTGIKAIHPLT-----GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL-----PIKVVIDPA 360 (842)
T ss_pred hhhhcccccEecCCEEECCCC-----CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC-----CcceeeCCc
Confidence 455577899999999999996 4689999999999999999999999999999999999999 7888887
Q ss_pred ----------CCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhH
Q psy1860 94 ----------ASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMN 163 (659)
Q Consensus 94 ----------~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k 163 (659)
++|++++ .++|+|+.+.+|+++|++.|+++|++.+ ++.|
T Consensus 361 ~~~~~~~~~~~~G~~~~-~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~----------------~v~y-------------- 409 (842)
T TIGR00396 361 GKNLKTQAFTEDGVLVN-SGEFNGLNSSEAREAIIAMLEKEGKGKR----------------KVNY-------------- 409 (842)
T ss_pred ccccccccccCCceEec-chhcCCCCHHHHHHHHHHHHHHcCCCCc----------------eEEe--------------
Confidence 3678775 4899999999999999999999998422 1111
Q ss_pred HHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEec--cHHHHHHh---hCCcccc-
Q psy1860 164 QDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVG--SIAELHRL---SGISVEK- 237 (659)
Q Consensus 164 ~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~--~~~~~~~~---~~~~~~~- 237 (659)
+++||||||||+||+|||+|||++|+.+.+.. ....+++. .|.+..+
T Consensus 410 ---------------------------rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl 462 (842)
T TIGR00396 410 ---------------------------RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPL 462 (842)
T ss_pred ---------------------------ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCch
Confidence 46799999999999999999999887654322 11223322 2211110
Q ss_pred ccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCC-----CcccccccCCcceEeeccccchhHHH-
Q psy1860 238 DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFD-----NRRDFDDRFPADFIAEGIDQTRGWFY- 311 (659)
Q Consensus 238 ~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~-----~~~~~~~~~p~d~~~~G~D~~~~w~~- 311 (659)
..+.+++ ...|| .|| +.+.|++|||||||||| ||+....+|.. +++++++|||+|+|++|.||+..|++
T Consensus 463 ~~~~~~~-~~~cp--~cg-~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLly 537 (842)
T TIGR00396 463 SRIQEWV-NVTCP--SCG-KPALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLY 537 (842)
T ss_pred hhhhhhh-cCcCc--cCC-CCcEeCCCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHH
Confidence 1223333 23344 345 46999999999999998 56555444432 34568899999999999999744322
Q ss_pred -----HHHHHHhhhcCCCCCCeEEEeceeec----CCCC---------------------------ccccCCCCCCCCCC
Q psy1860 312 -----TLLVISTALFKQAPFRNLIANGLVLA----QDGQ---------------------------KMSKSKRNYPDPME 355 (659)
Q Consensus 312 -----~~ll~~~~~~~~~p~k~v~~hG~v~~----~~G~---------------------------KMSKS~GN~i~p~~ 355 (659)
.+|.....+.+++||++|++||||++ ++|+ |||||+||+|+|.+
T Consensus 538 aRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ 617 (842)
T TIGR00396 538 ARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQE 617 (842)
T ss_pred HHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHH
Confidence 23333334567899999999999999 8999 99999999999999
Q ss_pred CCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccc-hhhcccccccccCC
Q psy1860 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDA-EEKLSFQYNEAEGS 434 (659)
Q Consensus 356 ~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~-~~~~~~~~~~~~~~ 434 (659)
++++| |||++|||+ +..+++ .+|.+|+ ++.++++++++++++.+.... .....+..- ....
T Consensus 618 ii~~y-gaDalRl~~---------l~~~~~----~~d~~~~---~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~-~~~~ 679 (842)
T TIGR00396 618 IVKKH-GADALRLYI---------MFMGPI----AASLEWN---DSGLEGARRFLDRVWNLFYNILGELDGKTYL-TPTI 679 (842)
T ss_pred HHHHc-CchHHHHHH---------HhcCCc----CCCCccC---HHHHHHHHHHHHHHHHHHHHHHhhhcccccC-Cccc
Confidence 99999 999999999 766555 7899998 688899999999985443221 100011100 0123
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHH
Q psy1860 435 TNIMDAWIISFSESLIEFVRKEMAAYR-LYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVR 513 (659)
Q Consensus 435 ~~~~d~~il~~l~~~~~~~~~~~e~~~-~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 513 (659)
.+..|+|+++++++++++++++|++|+ |++|++++|+|++++++. . .. .++++++..+++
T Consensus 680 l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~-~----------------~~--~~l~~~l~~ll~ 740 (842)
T TIGR00396 680 LEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKA-K----------------KD--ALYLEYLKGFLT 740 (842)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh-h----------------hH--HHHHHHHHHHHH
Confidence 467899999999999999999999988 999999999999876542 1 00 268899999999
Q ss_pred HhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy1860 514 VMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIP 582 (659)
Q Consensus 514 lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i~ 582 (659)
||+||+||+|||||+.|+. ...||+.+.||.+++..+.++ .+.-++++++++|+...++
T Consensus 741 lLaPf~PhiaEElW~~l~~----~~~sv~~~~wP~~d~~~l~~~------~~~~~vqiNGK~r~~i~v~ 799 (842)
T TIGR00396 741 VLSPFAPHLAEELWEKLGS----EPFIIKQAKWPKVDETALVED------KVTIVLQVNGKFKAKKTVP 799 (842)
T ss_pred HHhhhhhHHHHHHHHHhCC----CCCeeecCCCCCCCHHHHhhc------ceEEEEEEcCeEEEEEEeC
Confidence 9999999999999999962 235899999998766443211 1223355566555555443
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.1e-78 Score=695.35 Aligned_cols=417 Identities=24% Similarity=0.323 Sum_probs=323.4
Q ss_pred eeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccC---CC-
Q psy1860 20 SFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVD---AS- 95 (659)
Q Consensus 20 ~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd---~~- 95 (659)
+.+|..+.|.++.||+. ++.+||+.++||++++|||+||+|||||++||++|++||| +++++++ ++
T Consensus 382 ~~k~g~~~g~~~~~P~~-----~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~L-----pi~~vI~~~d~~~ 451 (963)
T PLN02563 382 KEKTGVFTGSYAINPAT-----GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDL-----PIKWVVKPADGNE 451 (963)
T ss_pred ceecccccCcEEeccCC-----CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCC-----CceeeeccCcccc
Confidence 46788899999999985 5689999999999999999999999999999999999999 6677773 11
Q ss_pred ----ccccCC-----Ccc----ccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHh
Q psy1860 96 ----GCFTAP-----VSH----FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHM 162 (659)
Q Consensus 96 ----G~~~~~-----~~~----~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~ 162 (659)
|.|++. .+. |.|+.+++|+++|+++|+++|.+.+ +
T Consensus 452 ~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~---------------- 499 (963)
T PLN02563 452 DDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK----------------K---------------- 499 (963)
T ss_pred ccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC----------------e----------------
Confidence 334332 243 9999999999999999999998621 0
Q ss_pred HHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccH---HHHHHhh-----CCc
Q psy1860 163 NQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSI---AELHRLS-----GIS 234 (659)
Q Consensus 163 k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~---~~~~~~~-----~~~ 234 (659)
++ | +|+||||||||+||+|||+|+|++|+.++++... ..+++.. +.+
T Consensus 500 ----------v~-------------y--~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g 554 (963)
T PLN02563 500 ----------VN-------------Y--KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTG 554 (963)
T ss_pred ----------eE-------------e--cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCC
Confidence 11 1 5889999999999999999999998876654321 1222111 111
Q ss_pred cccccc--cccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCccc-----ccccCCcceEeeccccc-
Q psy1860 235 VEKDLH--RESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRD-----FDDRFPADFIAEGIDQT- 306 (659)
Q Consensus 235 ~~~~~~--~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~-----~~~~~p~d~~~~G~D~~- 306 (659)
.+ .++ .++++ ..|| +|| +.++|++|||||||||+ ||+....+|.++... +++|+|+|+|++|.||+
T Consensus 555 ~~-pl~~~~~~~~-~~~p--~cg-~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhai 628 (963)
T PLN02563 555 EP-PLAKAVSWVN-TVDP--SSG-KPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAV 628 (963)
T ss_pred CC-chhcchhhhc-CcCc--CCC-CCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHh
Confidence 11 222 22222 2243 345 47999999999999997 567777777543322 35799999999999995
Q ss_pred ------hhHHHHHHHHHhhhcCCCCCCeEEEeceeec---------CCCC------------------------------
Q psy1860 307 ------RGWFYTLLVISTALFKQAPFRNLIANGLVLA---------QDGQ------------------------------ 341 (659)
Q Consensus 307 ------~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~---------~~G~------------------------------ 341 (659)
|||+.+++.+++ +.+++||++|++||||++ ++|+
T Consensus 629 lHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (963)
T PLN02563 629 LHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSF 707 (963)
T ss_pred hHhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccccccc
Confidence 999999999998 467899999999999998 7777
Q ss_pred ---------------ccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHH
Q psy1860 342 ---------------KMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSV 406 (659)
Q Consensus 342 ---------------KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~ 406 (659)
|||||+||||+|.++|++| |||+||||+ +..+++ .+|..|+ ++.++++
T Consensus 708 ~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kY-GADaLRl~l---------l~~ap~----~dd~~w~---~~~V~g~ 770 (963)
T PLN02563 708 VLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEY-GADSLRLYE---------MFMGPL----RDSKTWS---TSGVEGV 770 (963)
T ss_pred ccccCCcccccccccccccccCCcCCHHHHHHHc-CcHHHHHHH---------HhCCCc----ccccccC---HHHHHHH
Confidence 9999999999999999999 999999999 766555 7777777 7889999
Q ss_pred HHHHHHHHHHhccch-hhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHcc
Q psy1860 407 CLILKEKVLLANDAE-EKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNR 485 (659)
Q Consensus 407 ~~~~~~l~~l~n~~~-~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K 485 (659)
++|+++++.+..... ....+... ........|+|++++++.++++++++|++|+|++|++++|+|++.+++|+
T Consensus 771 ~rfL~rlwn~~~~~~~~~~~~~~~-~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~~----- 844 (963)
T PLN02563 771 HRFLGRTWRLVVGAPLPDGSFRDG-TVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWD----- 844 (963)
T ss_pred HHHHHHHHHHHHHhhhcccccCcc-ccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCch-----
Confidence 999999865432110 00011100 01112356899999999999999999999999999999999987765321
Q ss_pred ccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCC
Q psy1860 486 RRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGII 554 (659)
Q Consensus 486 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~ 554 (659)
...++++..+++||+|||||+|||||+.|+ ..+||+.++||.+++.++
T Consensus 845 ----------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg-----~~~sv~~~~WP~~d~~~l 892 (963)
T PLN02563 845 ----------------KVPREAIEPFVLLLSPYAPHLAEELWFRLG-----HSNSLAYEPWPEANPSYL 892 (963)
T ss_pred ----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcC-----CCCeeeeCCCCCCCHHHh
Confidence 034678999999999999999999999996 357999999998876543
No 27
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.9e-60 Score=537.12 Aligned_cols=395 Identities=19% Similarity=0.240 Sum_probs=303.9
Q ss_pred CCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCC--------ccccCCCcccc---CcccccCchHHHHHHHhc
Q psy1860 56 ESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDAS--------GCFTAPVSHFL---GLYVKDADKPIIKHLKEQ 124 (659)
Q Consensus 56 ~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~--------G~~~~~~~~~~---g~~v~~a~~~ii~~L~~~ 124 (659)
+.-+=.|.++..||..--..|++.|+ +....+|.. ..|.=..+.|. .....+..+.+++.|.++
T Consensus 41 G~~v~~~~g~D~~g~~i~~~A~~~g~-----~~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~k 115 (648)
T PRK12267 41 GYDVFFLTGTDEHGQKIQQAAEKAGK-----TPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQ 115 (648)
T ss_pred CCceEeecCCCCcchHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHC
Confidence 33455566677888776667777776 333333321 00100011121 112335668999999999
Q ss_pred CCEeEeecccccC----------------CccccCCCcEEEcccCceeeechHhHHHHHHhcCCc--eEecCcccchhhh
Q psy1860 125 SRLVSAGSVKHSY----------------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDT--YWVPEFVKEKRFG 186 (659)
Q Consensus 125 g~l~~~~~~~h~~----------------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~--~~~P~~~~~~~~~ 186 (659)
|.++. .+++..| |+|+|||+|++++.++||||+++++++++++++++. .+.|+.. .+.+.
T Consensus 116 G~IY~-~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~ 193 (648)
T PRK12267 116 GDIYK-GEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESR-KNEMI 193 (648)
T ss_pred CCEEE-eeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHH-HHHHH
Confidence 99986 3444432 899999999999999999999999999999999753 3568886 47787
Q ss_pred -hhhcC-CCceEeeecc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccc
Q psy1860 187 -NWLRE-ARDWAISRNR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVP 263 (659)
Q Consensus 187 -~~l~~-l~Dw~ISRqr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~ 263 (659)
+||++ ++|||||||| .||+|||. ++ .
T Consensus 194 ~~~l~~~l~D~~ISR~~~~WGipvP~----~~-----------------------------------------------~ 222 (648)
T PRK12267 194 NNFIKPGLEDLSISRTSFDWGIPVPF----DP-----------------------------------------------K 222 (648)
T ss_pred HHHhhCCCCCcccCCCCCCcceECCC----CC-----------------------------------------------C
Confidence 99995 9999999997 79999993 11 2
Q ss_pred cccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC
Q psy1860 264 EVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ 341 (659)
Q Consensus 264 dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~ 341 (659)
+|+||||||+++|++.++|+.++.++|+.|||+|+|++|+||++|| |||+++++.++ .||++|++|||+++ +|+
T Consensus 223 ~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~---~~p~~v~~hg~l~~-eg~ 298 (648)
T PRK12267 223 HVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGL---PLPKKVFAHGWWLM-KDG 298 (648)
T ss_pred CEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCC---CCCcEEEecceEEE-CCc
Confidence 4888999999999999999865556799999999999999999998 89999888754 68899999999998 899
Q ss_pred ccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHH-HHHHHHHHHHhccc
Q psy1860 342 KMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSV-CLILKEKVLLANDA 420 (659)
Q Consensus 342 KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~-~~~~~~l~~l~n~~ 420 (659)
|||||+||+|+|.+++++| |+|++|||| +..++. ++|.+|+ |+ .....+ .++.+ .++|+.
T Consensus 299 KMSKS~GN~i~p~d~l~~y-gaD~lR~~L---------~~~~~~----~~D~~fs-~~-~~~~~~n~~l~~---~lgNl~ 359 (648)
T PRK12267 299 KMSKSKGNVVDPEELVDRY-GLDALRYYL---------LREVPF----GSDGDFS-PE-ALVERINSDLAN---DLGNLL 359 (648)
T ss_pred eecccCCcccCHHHHHHHc-CCcHHHHHH---------HhcCCC----CCCCCCC-HH-HHHHHHHHHHHH---HHhHHH
Confidence 9999999999999999999 999999999 766555 8999999 32 221211 12223 344443
Q ss_pred hhhcc-----cccccc-cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCC--
Q psy1860 421 EEKLS-----FQYNEA-EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEG-- 492 (659)
Q Consensus 421 ~~~~~-----~~~~~~-~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~-- 492 (659)
++... +..... .......|+|++++++++++.+.++|++|+|++|++.+++|++ .+|+|++..|+|....+
T Consensus 360 ~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~-~~N~Yi~~~kpW~~~~~~~ 438 (648)
T PRK12267 360 NRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLIS-RANKYIDETAPWVLAKDEG 438 (648)
T ss_pred HHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHhCCChhhhcCcc
Confidence 32111 111100 1234567999999999999999999999999999999999975 69999999999753322
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 493 GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 493 ~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
+.+++++++++++++++.++++|+|||||+||+||++|+.
T Consensus 439 ~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 439 KKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 3445777889999999999999999999999999999974
No 28
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-59 Score=521.51 Aligned_cols=406 Identities=25% Similarity=0.342 Sum_probs=295.5
Q ss_pred CceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCC-----------CccccCCCccccCccc
Q psy1860 42 TSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDA-----------SGCFTAPVSHFLGLYV 110 (659)
Q Consensus 42 ~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~-----------~G~~~~~~~~~~g~~v 110 (659)
+..+||+.++||.+.+|||+||.+|||+.+||++|++|++ ++...+.. +|.+.+ .+.|.|+..
T Consensus 321 ~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l-----~i~~vi~~~~~~~~~~~~~~g~lin-S~~~~gl~~ 394 (814)
T COG0495 321 GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKL-----PIKKVIMPEGTVGKKVYEGEGVLIN-SGGLDGLDY 394 (814)
T ss_pred CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCC-----CeEEEEecCCCcccceeccCceEec-cccccCcch
Confidence 3579999999999999999999999999999999999999 44444332 233222 234555555
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhc
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLR 190 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~ 190 (659)
.+|...|+..|. -+...|||+++
T Consensus 395 e~a~~~~~~~l~--------------------------~~~~~q~~v~Y------------------------------- 417 (814)
T COG0495 395 EEAKVKIRCGLV--------------------------KRGLGQWFVNY------------------------------- 417 (814)
T ss_pred hHHHHHHHHhHH--------------------------HhcCCceEEec-------------------------------
Confidence 444334444333 34456888764
Q ss_pred CCCceEeeeccCCCccccEEEeCCCCeEEEe--ccHHHHHHhhCCccc-ccc-ccccccccccCCCCCCCCCcccccccc
Q psy1860 191 EARDWAISRNRYWGTPIPLWVSDDGEEIVCV--GSIAELHRLSGISVE-KDL-HRESVDSVTIPSVRPGKPPLRRVPEVF 266 (659)
Q Consensus 191 ~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~--~~~~~~~~~~~~~~~-~~~-~~~~~d~~~~~~~~~g~~~~~~~~dvl 266 (659)
+++||.+||||+||.|||+.+|++|+.+.+. +-...++......+. ..| +.+.|-..+|| .++..|++|||
T Consensus 418 ~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~-----~s~~~ret~Tm 492 (814)
T COG0495 418 RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLP-----DSTAYRETDTM 492 (814)
T ss_pred ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecC-----CCceeeehhhh
Confidence 6789999999999999999999999865432 112222222111111 011 22222222232 26889999999
Q ss_pred ceeccCCCCccccccCC-----CCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcC------CCCCCeEEEecee
Q psy1860 267 DCWFESGSMPYAQLHFP-----FDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFK------QAPFRNLIANGLV 335 (659)
Q Consensus 267 DvWfdS~~~~~~~~~~~-----~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~------~~p~k~v~~hG~v 335 (659)
|+|++|++.+.-.+.+- ...+++|++|||+|+|++|+|++-.|+-.+.+.|.++++ .+||++++++|||
T Consensus 493 ~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmV 572 (814)
T COG0495 493 DTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMV 572 (814)
T ss_pred hHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceE
Confidence 99999995432222111 124578999999999999999999999999999998875 5899999999999
Q ss_pred ecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHH
Q psy1860 336 LAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVL 415 (659)
Q Consensus 336 ~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~ 415 (659)
+..+|+||||||||+|+|++++++| |||++|+|+ +..+|+ .+|.+|+ +..++++++|+++++.
T Consensus 573 l~~~g~KMSKSKgN~v~p~~~i~~y-GADt~Rl~~---------m~~ap~----~~d~~W~---e~gv~g~~rfL~r~~~ 635 (814)
T COG0495 573 LGEEGEKMSKSKGNVVDPEEAVEKY-GADTVRLYI---------MFAAPP----EQDLEWS---ESGVEGARRFLQRVWN 635 (814)
T ss_pred EecCCCccccccCCCCCHHHHHHHh-CchHHHHHH---------HhhCCh----hhCCCCC---hhhhHHHHHHHHHHHH
Confidence 9878999999999999999999999 999999999 667666 7888887 7999999999999976
Q ss_pred HhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHccccccCCCCh
Q psy1860 416 LANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAA-YRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGP 494 (659)
Q Consensus 416 l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~-~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~ 494 (659)
+............ .......++|+++++. +.+++.++. +.|+.|+..+|+|+|.+ .+|...... .
T Consensus 636 l~~~~~~~~~~~~---~~~~~~~~~~~~h~~~---~~v~~~~e~~~~~nt~i~~~m~l~N~l-~~~~~~~~~------~- 701 (814)
T COG0495 636 LVKEHLEKLVEEL---TKEQGKEDRWLLHRTI---KKVTEDFEARQTFNTAIAALMELLNAL-RKYLRRTEG------D- 701 (814)
T ss_pred HHHHhhhcccccc---cchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccc------h-
Confidence 5432111000000 1111166788776654 555666665 88999999999998874 567653211 0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHH
Q psy1860 495 ADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQE 557 (659)
Q Consensus 495 ~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~ 557 (659)
. .++.+++..+++||+||+||+|||+|+.|+. .++|+.++||.+++..++++
T Consensus 702 ---~---~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~-----~~~v~~~~wP~~de~~l~~~ 753 (814)
T COG0495 702 ---R---KVLREALETWVRLLAPFAPHIAEELWEELGN-----EGFVSNAPWPEPDEEALVED 753 (814)
T ss_pred ---H---HHHHHHHHHHHHHhcccccHHHHHHHHHhcC-----CCceeeCCCCCCChhhcccc
Confidence 1 4788899999999999999999999999962 45899999999988766543
No 29
>KOG0437|consensus
Probab=100.00 E-value=4.8e-58 Score=482.50 Aligned_cols=473 Identities=18% Similarity=0.216 Sum_probs=355.3
Q ss_pred cCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHh-------CCCCC
Q psy1860 11 KEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLA-------GGVIT 83 (659)
Q Consensus 11 ~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~-------~~l~~ 83 (659)
..+.+..+.++.|.+|+|.....|++.+ ..+.++|...|..+.|||+|.++|+.+||||...+. |||..
T Consensus 343 ~~g~~~~~~~i~G~~~iGa~l~aPlsv~----~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ 418 (1080)
T KOG0437|consen 343 ERGVVSCLVTITGYDLIGAPLSAPLSVY----ERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKP 418 (1080)
T ss_pred cCCcccceeeecchhhcCCcccCcchhh----heeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCCh
Confidence 4566888999999999999999998754 458899999999999999999999999999998852 45422
Q ss_pred C-----CCccc--------------------cccCC----------------CccccCCCccccCcccccCchHHHHHHH
Q psy1860 84 R-----DQEIV--------------------CPVDA----------------SGCFTAPVSHFLGLYVKDADKPIIKHLK 122 (659)
Q Consensus 84 ~-----~~~~~--------------------~~vd~----------------~G~~~~~~~~~~g~~v~~a~~~ii~~L~ 122 (659)
+ ..|++ ++.|. +|.+ ..|+|.|.+|.++++.|-.+|.
T Consensus 419 ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m--lig~y~G~KVe~~K~~i~~~li 496 (1080)
T KOG0437|consen 419 EWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM--LIGKYKGEKVEDAKPKIKTDLI 496 (1080)
T ss_pred hhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE--EEeccccccHHhhhhHHHHHHH
Confidence 1 11221 11121 2322 2589999999999999999999
Q ss_pred hcCCEeEeecccccCCccccCCCcEEEcccCceeeech--HhHHHHHHhcCCce-EecCcccchhhhhhhcCCCceEeee
Q psy1860 123 EQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQ--HMNQDLLKCNSDTY-WVPEFVKEKRFGNWLREARDWAISR 199 (659)
Q Consensus 123 ~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~--~~k~~~~~~~~~~~-~~P~~~~~~~~~~~l~~l~Dw~ISR 199 (659)
+.|.+++..+-+ -++-+|||..|++.+++|||+++. +||+.+.++++.++ |-|+. ++.+..-|+||+.|+|||
T Consensus 497 ~~g~a~~y~EPE--kqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEt--R~~fE~tLdWL~~wacsR 572 (1080)
T KOG0437|consen 497 ETGDALKYNEPE--KQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDET--RNGFEDTLDWLGQWACSR 572 (1080)
T ss_pred hcccceeecCcc--hhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHH--HHHHHHHHHHHHhhhhhc
Confidence 999999865544 578999999999999999999997 69999999999985 56665 378888899999999999
Q ss_pred ccCCCccccE---EEeCCCCe-EEE--eccHHHHHHhhCCccc---------cccccccccccccCCCCCCCCCcccccc
Q psy1860 200 NRYWGTPIPL---WVSDDGEE-IVC--VGSIAELHRLSGISVE---------KDLHRESVDSVTIPSVRPGKPPLRRVPE 264 (659)
Q Consensus 200 qr~WG~piP~---~~~~~~~~-~i~--~~~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~g~~~~~~~~d 264 (659)
..+.||+||| |..++.++ +|| +++++|+... ...+. ..+..+.||++++.... ...
T Consensus 573 syGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~-d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~------~k~-- 643 (1080)
T KOG0437|consen 573 SYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR-DLYGKVEGPLGIKPDQMTDEVWDYVFLNEPY------PKN-- 643 (1080)
T ss_pred cccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHH-hhccCCcccCCCChhhcCHHHHHHhhccCCC------CcC--
Confidence 9999999998 45555443 555 5788988764 21111 01223344444332110 000
Q ss_pred ccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceeecCCCCcc
Q psy1860 265 VFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVLAQDGQKM 343 (659)
Q Consensus 265 vlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~~~~G~KM 343 (659)
...|-..+. +.+++|++|||.|++++|+|++.+|+...+++|++++.+.-| |.|.+||+++. +++||
T Consensus 644 --------t~i~~e~L~---~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmL-NsEKM 711 (1080)
T KOG0437|consen 644 --------TAIPEEALS---NLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLML-NSEKM 711 (1080)
T ss_pred --------CCccHHHHH---HHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEe-cchhh
Confidence 001111221 346789999999999999999999999999999999986555 99999999997 99999
Q ss_pred ccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhh
Q psy1860 344 SKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEK 423 (659)
Q Consensus 344 SKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~ 423 (659)
|||.||+.+..+.+++| |||+.|+.| +..+|. .+|.+|. + ..+...+-+++.......+.
T Consensus 712 SKSTGNfmTL~qaieKF-gad~tRlal---------AdaGD~----veDANF~--e----a~AnAaILRLyt~~ew~eEm 771 (1080)
T KOG0437|consen 712 SKSTGNFMTLEQAIEKF-GADGTRLAL---------ADAGDG----VEDANFV--E----ANANAAILRLYTYVEWIEEM 771 (1080)
T ss_pred ccccCCeeeHHHHHHHh-Cccceeeee---------ecccCC----cccchhH--H----hcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999 888886 8999997 4 33334444443221111100
Q ss_pred cc-c-ccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHHHHHHHHccccccCCCChHhHHHH
Q psy1860 424 LS-F-QYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRL-VLFIDNLTNWYVRMNRRRLKGEGGPADCKVA 500 (659)
Q Consensus 424 ~~-~-~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l-~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~ 500 (659)
.. . .... .....+.|+.+.+.+|.+++...++|+...|+.|++.- ++| ....++|-++.-. ...
T Consensus 772 ~~~~s~Lrt-Gp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~-qaArD~Yrel~g~-----------~mh 838 (1080)
T KOG0437|consen 772 CENRSSLRT-GPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL-QAARDMYRELCGE-----------GMH 838 (1080)
T ss_pred HhhHHhhcc-CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH-HHHHHHHHHHhcc-----------ccc
Confidence 00 0 0111 11234899999999999999999999999999999975 455 5668999876431 122
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCC
Q psy1860 501 LNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRG 552 (659)
Q Consensus 501 ~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~ 552 (659)
..++...+++.+.||+||+||+||.||+.+. ....||+. .||.+++.
T Consensus 839 ~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~----~~~~~v~~-~wP~~s~~ 885 (1080)
T KOG0437|consen 839 RDLVFRFIETQTLLLAPICPHLAEYIWRTVL----KKNFSVNV-GWPFVSPP 885 (1080)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhc----cCCceeec-CCCCCCCH
Confidence 2467889999999999999999999999986 23456655 99988763
No 30
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-57 Score=511.52 Aligned_cols=336 Identities=14% Similarity=0.155 Sum_probs=254.4
Q ss_pred CccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhc-CCCceEeeeccCCCccccEEEeCCCC
Q psy1860 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLR-EARDWAISRNRYWGTPIPLWVSDDGE 216 (659)
Q Consensus 138 p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr~WG~piP~~~~~~~~ 216 (659)
|+|+|||+++|+++++||||++++++++++++++++.++|+.. .+++.+||+ +++||||||||+|||||| |.+. .+
T Consensus 172 p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~-~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~-~~ 248 (556)
T PRK12268 172 PRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNV-LNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF-EG 248 (556)
T ss_pred CccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHH-HHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-CC
Confidence 5788899999999999999999999999999999888999998 489999999 899999999999999999 5543 24
Q ss_pred eEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCCCCcccccc-CCCC--Cccccccc
Q psy1860 217 EIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLH-FPFD--NRRDFDDR 293 (659)
Q Consensus 217 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~-~~~~--~~~~~~~~ 293 (659)
+++|+ |||+...|.+.++ +... ....|..|
T Consensus 249 ~~iyv-----------------------------------------------W~da~~~y~~~~~~~~~~~g~~~~~~~~ 281 (556)
T PRK12268 249 KVFYV-----------------------------------------------WFDAVIGYISASKEWAERTGDPEAWKEF 281 (556)
T ss_pred cEEEE-----------------------------------------------eehHhhHHHHHHHHHHHhcCCchHHHHH
Confidence 45554 4444333332211 1100 11234445
Q ss_pred C----CcceEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhh
Q psy1860 294 F----PADFIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLV 367 (659)
Q Consensus 294 ~----p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR 367 (659)
| |.+++++|+|+++|| ++++++++.+.....| +++++||||++ +|+|||||+||+|+|.+++++| |+|++|
T Consensus 282 w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P-~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~~y-GaDalR 358 (556)
T PRK12268 282 WLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP-DEIVSSEYLTL-EGGKFSKSRGWGIWVDDALERY-PPDYLR 358 (556)
T ss_pred hCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC-CEeeccCCEEE-CCeeeccCCCcccCHHHHHHHc-CcHHHH
Confidence 5 567999999999999 6899988887422455 79999999997 9999999999999999999999 999999
Q ss_pred hhcccccccccccCCCCCccccCcccccccCchhhhHH--HHHHHHHHHHHhccchh-h-cccccccccCCCChhhHHHH
Q psy1860 368 LSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWS--VCLILKEKVLLANDAEE-K-LSFQYNEAEGSTNIMDAWII 443 (659)
Q Consensus 368 ~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~--~~~~~~~l~~l~n~~~~-~-~~~~~~~~~~~~~~~d~~il 443 (659)
||+ ++.+++ ++|.+|+ . +.+.. ..+++++++++.+.... . ..+.........+..|+|++
T Consensus 359 ~~l---------l~~~~~----~~d~~f~--~-~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~ll 422 (556)
T PRK12268 359 YYL---------AANAPE----NSDTDFT--W-EEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELI 422 (556)
T ss_pred HHH---------HhcCCC----CCCCCCC--H-HHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCcccHHHH
Confidence 999 766555 8999999 3 22211 12333333221111000 0 00000000123467899999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy1860 444 SFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLC 523 (659)
Q Consensus 444 ~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~a 523 (659)
++++++++.+.++|++|+|+.|++.+++|+ +++++|++..|+|.....+.+.++.+++++.++++.+++||+|||||+|
T Consensus 423 ~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~-~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~a 501 (556)
T PRK12268 423 AEAEALFKEVGELLEAGEFKKALEEIMELA-REANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSA 501 (556)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHH
Confidence 999999999999999999999999999998 4899999999998644334445667788888999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCceeccCCCC
Q psy1860 524 EHLYQNLRHLTGRLERSIHFIMMPQP 549 (659)
Q Consensus 524 Eeiw~~L~~~~~~~~~sv~~~~~P~~ 549 (659)
|+||++|+. +++..+.||..
T Consensus 502 eei~~~Lg~------~~~~~~~w~~~ 521 (556)
T PRK12268 502 QKIWEMLGG------ENIEKLTWESL 521 (556)
T ss_pred HHHHHHhCC------CCCcccchhhh
Confidence 999999962 35556677753
No 31
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.2e-56 Score=500.85 Aligned_cols=323 Identities=18% Similarity=0.208 Sum_probs=261.9
Q ss_pred cccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCC---ceEecCcccchhhhhhhcC-CCceEeeeccC-CCcccc
Q psy1860 134 KHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD---TYWVPEFVKEKRFGNWLRE-ARDWAISRNRY-WGTPIP 208 (659)
Q Consensus 134 ~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~---~~~~P~~~~~~~~~~~l~~-l~Dw~ISRqr~-WG~piP 208 (659)
++..|+|+|||+|+|++.++||||+++++++++++++++ ..+.|+.. ++.+.+||++ ++|||||||++ ||+|||
T Consensus 163 ~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~iSR~~~~WGipvP 241 (530)
T TIGR00398 163 ELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNV-KNKAQNWLKGGLKDLAITRDLVYWGIPVP 241 (530)
T ss_pred HhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHH-HHHHHHHHhCCCCCccccCcCCCCCeeCC
Confidence 456789999999999999999999999999999999874 44557766 4788899996 99999999999 999999
Q ss_pred EEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcc
Q psy1860 209 LWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRR 288 (659)
Q Consensus 209 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~ 288 (659)
.| + .+++||||||++.|++.++++..+++
T Consensus 242 ~~----~-----------------------------------------------~~~~yvW~da~~~y~~~~~~~~~~~~ 270 (530)
T TIGR00398 242 ND----P-----------------------------------------------NKVVYVWFDALIGYISSLGILSGDTE 270 (530)
T ss_pred CC----C-----------------------------------------------CcEEEEeecchHHhHhhhccccCChh
Confidence 52 1 13677999999999887777543345
Q ss_pred cccccCCcc-----eEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCC
Q psy1860 289 DFDDRFPAD-----FIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNL 361 (659)
Q Consensus 289 ~~~~~~p~d-----~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~ 361 (659)
+|+.|||+| +++.|+||++|| ||+++++++++ .||+++++||||++ +|+|||||+||+|+|.+++++|
T Consensus 271 ~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~---~~~~~~~~~g~v~~-~g~KmSKS~Gn~i~~~d~i~~~- 345 (530)
T TIGR00398 271 DWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGL---PLPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARF- 345 (530)
T ss_pred hHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCC---CCCCEEEeeccEEE-CCceecccCCceecHHHHHHHc-
Confidence 788999999 999999999998 89999988764 67899999999999 6999999999999999999999
Q ss_pred CchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHH--HHHHHHHHHHhc-cchhhc-ccccc-cccCCCC
Q psy1860 362 IANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSV--CLILKEKVLLAN-DAEEKL-SFQYN-EAEGSTN 436 (659)
Q Consensus 362 gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~--~~~~~~l~~l~n-~~~~~~-~~~~~-~~~~~~~ 436 (659)
|+|++|||+ ++.+++ ++|.+|+ . +.+... .++++++.++.+ ...... .+... +......
T Consensus 346 g~D~lR~~l---------~~~~~~----~~d~~f~--~-~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~ 409 (530)
T TIGR00398 346 GADILRYYL---------LKERPL----GKDGDFS--W-EDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITD 409 (530)
T ss_pred CchHHHHHH---------hhCCCC----CCCCCCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccc
Confidence 999999999 766555 8999999 3 333333 334444422211 000000 01100 0011235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhc
Q psy1860 437 IMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMA 516 (659)
Q Consensus 437 ~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~ 516 (659)
..|+|++++++++.+.+.++|++|+|+.|++.+++|+ .++|+|++.+|+|....++ .++++++++++++++.++++|+
T Consensus 410 ~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~-~~~n~Yi~~~kpw~~~~~~-~~~~~~~~~l~~~l~~l~~ll~ 487 (530)
T TIGR00398 410 EEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA-DRGNKYIDENKPWELFKQS-PRLKELLAVCSMLIRVLSILLY 487 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHhcCCChhhcCCh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999998 5799999999998766443 3567889999999999999999
Q ss_pred cchhHHHHHHHHHhh
Q psy1860 517 PYTPFLCEHLYQNLR 531 (659)
Q Consensus 517 P~~P~~aEeiw~~L~ 531 (659)
|||||+||+||++|+
T Consensus 488 P~~P~~ae~i~~~L~ 502 (530)
T TIGR00398 488 PIMPKLSEKILKFLN 502 (530)
T ss_pred CcccHHHHHHHHHhC
Confidence 999999999999996
No 32
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-55 Score=494.87 Aligned_cols=345 Identities=17% Similarity=0.189 Sum_probs=271.6
Q ss_pred cccCchHHHHHHHhcCCEeEeeccccc--------------------------------------------CCccccCCC
Q psy1860 110 VKDADKPIIKHLKEQSRLVSAGSVKHS--------------------------------------------YPFCWRSDT 145 (659)
Q Consensus 110 v~~a~~~ii~~L~~~g~l~~~~~~~h~--------------------------------------------~p~~~r~g~ 145 (659)
..++...+++.|.++|.++..+ +... .|+|.+||+
T Consensus 99 h~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~ 177 (673)
T PRK00133 99 NRELAQEIYLKLKENGYIYEKT-IEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGA 177 (673)
T ss_pred HHHHHHHHHHHHHHCCCEEEee-eEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCC
Confidence 3456678899999999988732 2211 267889999
Q ss_pred cEEEcccCceeeechHhHHHHHHhcCC-ceEecCcccchhhhhhhc-CCCceEeeeccCC-CccccEEEeCCCCeEEEec
Q psy1860 146 PLIYKAVPSWFIRVQHMNQDLLKCNSD-TYWVPEFVKEKRFGNWLR-EARDWAISRNRYW-GTPIPLWVSDDGEEIVCVG 222 (659)
Q Consensus 146 ~v~~~~~~qwFi~~~~~k~~~~~~~~~-~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr~W-G~piP~~~~~~~~~~i~~~ 222 (659)
|++++.++||||+++++++++++++++ ..| |+.. .+.+.+||+ +++|||||||+.| |+|+| .+.++
T Consensus 178 ~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~l~~~l~d~~ISR~~~W~GipvP----~~~~~----- 246 (673)
T PRK00133 178 TPVLKESEHFFFKLPRFEEFLKEWITRSGEL-QPNV-ANKMKEWLEEGLQDWDISRDAPYFGFEIP----GAPGK----- 246 (673)
T ss_pred cceEEecceEEEEHHHHHHHHHHHHhcCCCC-CHHH-HHHHHHHHhCCCcccceeeeCCccceECC----CCCCe-----
Confidence 999999999999999999999999864 455 7776 588999997 7999999999999 99999 23333
Q ss_pred cHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCCCCccccc-cCCCC-CcccccccCCcc---
Q psy1860 223 SIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQL-HFPFD-NRRDFDDRFPAD--- 297 (659)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~-~~~~~-~~~~~~~~~p~d--- 297 (659)
|++||||+.++|++.. +|+.. +.+.|+.|||.+
T Consensus 247 ------------------------------------------~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~ 284 (673)
T PRK00133 247 ------------------------------------------VFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDT 284 (673)
T ss_pred ------------------------------------------EEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCc
Confidence 4568999888887766 46532 234688899433
Q ss_pred --eEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 298 --FIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 298 --~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
+|+.|+||++|| +|++++++.++ .++++|++||||++ +|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 285 ~~v~~iGkDi~~fH~i~wpa~l~a~g~---~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~y-gaDalR~~l--- 356 (673)
T PRK00133 285 ELYHFIGKDIIYFHTLFWPAMLEGAGY---RLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHL-DPDYLRYYL--- 356 (673)
T ss_pred eEEEEEeecchhHHHHHHHHHHHhCCC---CCCCEEeeeccEEe-cCCcccccCCcccCHHHHHHHc-CchHHHHHH---
Confidence 899999999999 89999999765 44599999999999 9999999999999999999999 999999999
Q ss_pred cccccccCCCCCccccC-cccccccCchhhhHH-HHHHHHHHHHHhccchh--hcccccccccCCCChhhHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRG-RLCPVHVWEPVHVWS-VCLILKEKVLLANDAEE--KLSFQYNEAEGSTNIMDAWIISFSESL 449 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~-~d~~f~lw~~~~~~~-~~~~~~~l~~l~n~~~~--~~~~~~~~~~~~~~~~d~~il~~l~~~ 449 (659)
++.+++ + +|.+|+ |+ ..... -.+++++++++.+.... ...+.. .......|+|++++++++
T Consensus 357 ------l~~~~~----~~~D~~Fs-~~-~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~---~~~~~~~d~~ll~~l~~~ 421 (673)
T PRK00133 357 ------AAKLPE----TIDDLDFN-WE-DFQQRVNSELVGKVVNFASRTAGFINKRFDG---KLPDALADPELLEEFEAA 421 (673)
T ss_pred ------HhcCCC----CCCCCCCC-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCcccHHHHHHHHHH
Confidence 766554 7 899999 43 22111 12334444322221100 001111 111245699999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy1860 450 IEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQN 529 (659)
Q Consensus 450 ~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~ 529 (659)
++.+.++|++|+|+.|++.+++|+ .++|+|++..|+|....++.+++..++++++++++.+++||+|||||+||+||++
T Consensus 422 ~~~v~~a~e~~~~~~a~~~l~~l~-~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~ 500 (673)
T PRK00133 422 AEKIAEAYEAREFRKALREIMALA-DFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAF 500 (673)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHH
Confidence 999999999999999999999996 5799999999997543334455778888999999999999999999999999999
Q ss_pred hhh
Q psy1860 530 LRH 532 (659)
Q Consensus 530 L~~ 532 (659)
|+.
T Consensus 501 Lg~ 503 (673)
T PRK00133 501 LNL 503 (673)
T ss_pred hCC
Confidence 974
No 33
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-54 Score=469.22 Aligned_cols=394 Identities=20% Similarity=0.274 Sum_probs=313.3
Q ss_pred CCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCcc-ccC-------CCcccc---CcccccCchHHHHHHHhc
Q psy1860 56 ESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGC-FTA-------PVSHFL---GLYVKDADKPIIKHLKEQ 124 (659)
Q Consensus 56 ~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~-~~~-------~~~~~~---g~~v~~a~~~ii~~L~~~ 124 (659)
+.-|=.|.++..||.---.-|++.|+ .+...+|..-. +.+ ..+.|. .....+..+++.+.|.++
T Consensus 42 G~~v~fvtGtDeHGt~I~~~A~~~g~-----tP~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~ 116 (558)
T COG0143 42 GYEVFFLTGTDEHGTKIELKAEKEGI-----TPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYEN 116 (558)
T ss_pred CCeEEEEeccCCCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHC
Confidence 55677788899999999999999998 45555554211 100 112221 223456778999999999
Q ss_pred CCEeEeecccccC--------------------------------------------CccccCCCcEEEcccCceeeech
Q psy1860 125 SRLVSAGSVKHSY--------------------------------------------PFCWRSDTPLIYKAVPSWFIRVQ 160 (659)
Q Consensus 125 g~l~~~~~~~h~~--------------------------------------------p~~~r~g~~v~~~~~~qwFi~~~ 160 (659)
|.++. .+++..| |+|++||+.+++|.+++|||+++
T Consensus 117 G~I~~-~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~ 195 (558)
T COG0143 117 GDIYL-REYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLS 195 (558)
T ss_pred CCEec-cceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHH
Confidence 99876 4444444 67888888889999999999999
Q ss_pred HhHHHHHHhcCC--ceEecCcccchhhhhhhc-CCCceEeee-ccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccc
Q psy1860 161 HMNQDLLKCNSD--TYWVPEFVKEKRFGNWLR-EARDWAISR-NRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVE 236 (659)
Q Consensus 161 ~~k~~~~~~~~~--~~~~P~~~~~~~~~~~l~-~l~Dw~ISR-qr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 236 (659)
++++++++++++ ..+.|++. ++.+.+||+ +|+|||||| ...||+||| +++++
T Consensus 196 ~~~~~L~~~~~~~~~~~~p~~~-~ne~~~~i~~GL~d~~IsR~~~~WGipvP----~~p~k------------------- 251 (558)
T COG0143 196 KFQDKLLEWYESNPDFIWPANR-RNEVLNFLKEGLKDLSITRTDLDWGIPVP----GDPGK------------------- 251 (558)
T ss_pred HhHHHHHHHHHhCccccCChHH-HHHHHHHHHccCcccceecCCCCCCccCC----CCCCC-------------------
Confidence 999999999875 45678887 588889998 699999999 779999999 44444
Q ss_pred cccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCC--CCcccccccCCcc----eEeeccccchhH-
Q psy1860 237 KDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPF--DNRRDFDDRFPAD----FIAEGIDQTRGW- 309 (659)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~--~~~~~~~~~~p~d----~~~~G~D~~~~w- 309 (659)
|++||||+.+.|++.+++.. .+.++|.+|||.| +|+.|+||++||
T Consensus 252 ----------------------------v~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHa 303 (558)
T COG0143 252 ----------------------------VIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHA 303 (558)
T ss_pred ----------------------------EEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchh
Confidence 44589999999998888753 3456899999998 999999999999
Q ss_pred -HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccc
Q psy1860 310 -FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388 (659)
Q Consensus 310 -~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~ 388 (659)
|||+||++.++. .| ++|++|||++. +|+|||||+||||+|.++++.| |+|+||||| +...+
T Consensus 304 v~wPamL~~~~~~--lP-~~i~ahg~l~~-~G~KmSKSrG~~V~~~~~~~~~-~~D~lRYyL---------~~~~p---- 365 (558)
T COG0143 304 VYWPAMLMAAGLP--LP-TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQY-GVDALRYYL---------ARELP---- 365 (558)
T ss_pred hHHHHHHHhCCCC--CC-CEEEeeeeEEE-CCccccccCCcEEeHHHHHHHc-CchHhHHHH---------HHhCC----
Confidence 999999999883 44 99999999998 9999999999999999999999 999999999 77744
Q ss_pred cCcccccccCchhhhHHHHHHHHH-H-HHHhccchhhccccc---ccc---cC-CCChhhHHHHHHHHHHHHHHHHHHHh
Q psy1860 389 RGRLCPVHVWEPVHVWSVCLILKE-K-VLLANDAEEKLSFQY---NEA---EG-STNIMDAWIISFSESLIEFVRKEMAA 459 (659)
Q Consensus 389 ~~~d~~f~lw~~~~~~~~~~~~~~-l-~~l~n~~~~~~~~~~---~~~---~~-~~~~~d~~il~~l~~~~~~~~~~~e~ 459 (659)
.++|.+|+ |+ .+.+.+|. | ..++|+.++...|.. ... .. .....|+.++..+..+...+.++|++
T Consensus 366 ~~~D~dFs-~~-----~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~ 439 (558)
T COG0143 366 EGSDGDFS-WE-----DFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEK 439 (558)
T ss_pred CCCCCCCC-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 49999999 43 33333332 2 456776665433211 111 11 11257889999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHccccc-cCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 460 YRLYTVVPRLVLFIDNLTNWYVRMNRRRL-KGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 460 ~~~~~a~~~l~~f~~~~~~~Yle~~K~~l-~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
++|++|+..+++++.. +|.|++..+||. ..++..+++.++++++.++++.++.+|+||||.+|++||++|+.
T Consensus 440 ~~~~~Al~~i~~l~~~-~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 440 YEFRKALEEIMALASR-ANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred hhHHHHHHHHHHHHHH-HHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCC
Confidence 9999999999999755 899999999984 44434567888999999999999999999999999999999974
No 34
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-54 Score=482.06 Aligned_cols=344 Identities=21% Similarity=0.290 Sum_probs=272.3
Q ss_pred ccCchHHHHHHHhcCCEeEeecc------cccC----------CccccCCCcEEEcccCceeeechHhHHHHHHhcCC-c
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSV------KHSY----------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD-T 173 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~------~h~~----------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~-~ 173 (659)
.+....+++.|.++|.++..+.- ...+ |+|||||+|++++.++|||++++.+++++.+++++ .
T Consensus 99 ~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~ 178 (511)
T PRK11893 99 KEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANP 178 (511)
T ss_pred HHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCC
Confidence 45567899999999998874321 1112 78999999999999999999999999999999876 3
Q ss_pred e-EecCcccchhhhhhhc-CCCceEeee-ccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccC
Q psy1860 174 Y-WVPEFVKEKRFGNWLR-EARDWAISR-NRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIP 250 (659)
Q Consensus 174 ~-~~P~~~~~~~~~~~l~-~l~Dw~ISR-qr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 250 (659)
. +.|+.. .+++.+|++ +++|||||| |++||+|||. +
T Consensus 179 ~~~~p~~~-~~~~~~~l~~~~~D~~isR~~~~WGipiP~----~------------------------------------ 217 (511)
T PRK11893 179 DFIQPASR-RNEVISFVKSGLKDLSISRTNFDWGIPVPG----D------------------------------------ 217 (511)
T ss_pred CccCCHHH-HHHHHHHHHCCCCCcccCCCCCCCCccCCC----C------------------------------------
Confidence 4 468876 478889998 599999999 8999999994 1
Q ss_pred CCCCCCCCccccccccceeccCCCCccccccCCCCCc---ccccccCCcceEeeccccchhHH--HHHHHHHhhhcCCCC
Q psy1860 251 SVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNR---RDFDDRFPADFIAEGIDQTRGWF--YTLLVISTALFKQAP 325 (659)
Q Consensus 251 ~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~---~~~~~~~p~d~~~~G~D~~~~w~--~~~ll~~~~~~~~~p 325 (659)
+.+++||||||+++|++..++|.+.. ++|.+|||.|+|++|+||++||. +++++++. ....|
T Consensus 218 -----------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~--~~~~p 284 (511)
T PRK11893 218 -----------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAA--GLPLP 284 (511)
T ss_pred -----------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhC--CCCCC
Confidence 12467899999999999888875432 35889999999999999999994 55555544 33566
Q ss_pred CCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHH
Q psy1860 326 FRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWS 405 (659)
Q Consensus 326 ~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~ 405 (659)
+++++|||+++ +|+|||||+||+|+|.+++++| |+|++|||+ ++.++. .+|.+|+ . +.+..
T Consensus 285 -~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~~~-g~DalR~~l---------l~~~~~----~~d~~Fs--~-~~~~~ 345 (511)
T PRK11893 285 -KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEY-GVDAVRYFL---------LREIPF----GQDGDFS--R-EAFIN 345 (511)
T ss_pred -CEEEeeccEEE-CCeeecccCCcEEcHHHHHHHc-CcHHHHHHH---------HhcCCC----CcCCCCC--H-HHHHH
Confidence 99999999998 9999999999999999999999 999999999 766444 8899999 3 23322
Q ss_pred -HH-HHHHHHHHHhccchhhc-----ccc-cccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q psy1860 406 -VC-LILKEKVLLANDAEEKL-----SFQ-YNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLT 477 (659)
Q Consensus 406 -~~-~~~~~l~~l~n~~~~~~-----~~~-~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~ 477 (659)
.+ ++.+.+ +|+..+.. .+. ..+........|+|++++++++.+.+.++|++|+++.|++.+++|++. +
T Consensus 346 ~~~~~l~~~l---~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~-~ 421 (511)
T PRK11893 346 RINADLANDL---GNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRA-A 421 (511)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-H
Confidence 11 122222 22211100 000 000012345679999999999999999999999999999999999854 8
Q ss_pred HHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy1860 478 NWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLR 531 (659)
Q Consensus 478 ~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 531 (659)
++|++..|+|....++.+++++++.+++++++.+++||+|||||+||+||+.|+
T Consensus 422 n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~ 475 (511)
T PRK11893 422 NKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLG 475 (511)
T ss_pred HHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhC
Confidence 999999998754433455678899999999999999999999999999999996
No 35
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=8.9e-54 Score=487.22 Aligned_cols=391 Identities=14% Similarity=0.174 Sum_probs=294.4
Q ss_pred CceeecCCCCChhhHHHHHhCCCCCCCCccccccCCC-ccccC-------CCccccC---cccccCchHHHHHHHhcCCE
Q psy1860 59 TGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDAS-GCFTA-------PVSHFLG---LYVKDADKPIIKHLKEQSRL 127 (659)
Q Consensus 59 TG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~-G~~~~-------~~~~~~g---~~v~~a~~~ii~~L~~~g~l 127 (659)
+=.+.++..||.---..|.+.|+ .....+|.. ..+.+ ..+.|.. -...++.+.++..|.++|++
T Consensus 58 v~f~~GtDehG~~i~~~A~~~g~-----~p~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~I 132 (801)
T PLN02610 58 AIYICGTDEYGTATETKALEENC-----TPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWL 132 (801)
T ss_pred eEecccccCCcHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 44667778898887777888777 333444321 01110 0112211 12345678899999999998
Q ss_pred eEeeccccc----------------------------------------------CCccccCCCcEEEcccCceeeechH
Q psy1860 128 VSAGSVKHS----------------------------------------------YPFCWRSDTPLIYKAVPSWFIRVQH 161 (659)
Q Consensus 128 ~~~~~~~h~----------------------------------------------~p~~~r~g~~v~~~~~~qwFi~~~~ 161 (659)
++. +++.. .|+|++||+|++++.++||||++++
T Consensus 133 y~~-~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~ 211 (801)
T PLN02610 133 SEN-TMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPL 211 (801)
T ss_pred EEe-eEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHH
Confidence 873 33322 2557779999999999999999999
Q ss_pred hHHHHHHhcCCceEecCcccch---hhhhhhc-CCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCcccc
Q psy1860 162 MNQDLLKCNSDTYWVPEFVKEK---RFGNWLR-EARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK 237 (659)
Q Consensus 162 ~k~~~~~~~~~~~~~P~~~~~~---~~~~~l~-~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 237 (659)
+++++++++++....|++. .+ .+.+||+ +|+||||||+..||+|+|. ++
T Consensus 212 ~~~~L~~~~~~~~~~~~~~-~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~----~~---------------------- 264 (801)
T PLN02610 212 LKDKLVEYINETSVAGGWS-QNAIQTTNAWLRDGLKPRCITRDLKWGVPVPL----EK---------------------- 264 (801)
T ss_pred HHHHHHHHHHhCCCCCCcC-HHHHHHHHHHHhCCCCCcceeeecCCcccCCC----CC----------------------
Confidence 9999999997644556554 23 3448997 7999999999999999994 21
Q ss_pred ccccccccccccCCCCCCCCCccccccccceeccCCCCccccc-cCCCCCcccccccCCc--c---eEeeccccchhH--
Q psy1860 238 DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQL-HFPFDNRRDFDDRFPA--D---FIAEGIDQTRGW-- 309 (659)
Q Consensus 238 ~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~-~~~~~~~~~~~~~~p~--d---~~~~G~D~~~~w-- 309 (659)
-+..|++||||+.+.|++.+ +|. ++|..|||. | +|+.|+||++||
T Consensus 265 -----------------------~~~~v~YVWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~~fH~i 317 (801)
T PLN02610 265 -----------------------YKDKVFYVWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNVPFHTV 317 (801)
T ss_pred -----------------------CCCcEEEEehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecchhHHH
Confidence 01246779999999998876 664 247889975 6 899999999999
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhcccccccccccCCCCCccc
Q psy1860 310 FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSSDGQKMSKSKKNYPDPMEV 388 (659)
Q Consensus 310 ~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l~~~~msk~~~~~~~~~~~ 388 (659)
+||+||+++++.- .++++|++|||++. +|+|||||+||+|+|.+++++ | |+|++|||| ++.++.
T Consensus 318 ~wPa~L~a~g~~~-~~p~~i~~~g~l~~-eG~KMSKS~GNvV~p~~~i~~~y-g~D~lRyyL---------l~~~p~--- 382 (801)
T PLN02610 318 MFPSTLLGTGENW-TMMKTISVTEYLNY-EGGKFSKSKGVGVFGNDAKDTNI-PVEVWRYYL---------LTNRPE--- 382 (801)
T ss_pred HHHHHHHhCCCCc-CCCCEEEeccCEec-CCceecCcCCcccCHHHHHhccC-CchHhHHHh---------hhcCCC---
Confidence 8999999986511 24499999999997 999999999999999999996 9 999999999 777555
Q ss_pred cCcccccccCchhhhHHHHHHHHH-H-HHHhccchhhccc---------ccccc---cCCCChhhHHHHHHHHHHHHHHH
Q psy1860 389 RGRLCPVHVWEPVHVWSVCLILKE-K-VLLANDAEEKLSF---------QYNEA---EGSTNIMDAWIISFSESLIEFVR 454 (659)
Q Consensus 389 ~~~d~~f~lw~~~~~~~~~~~~~~-l-~~l~n~~~~~~~~---------~~~~~---~~~~~~~d~~il~~l~~~~~~~~ 454 (659)
++|.+|+ |+ .+.+.+|. | ..++|+.++...| ..... .......|+|++++++++++++.
T Consensus 383 -~~D~dFs-~~-----~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~ 455 (801)
T PLN02610 383 -VSDTLFT-WA-----DLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYV 455 (801)
T ss_pred -CCCCcCC-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHH
Confidence 9999999 53 22222222 2 3445544432211 11100 01134568999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 455 KEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 455 ~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
++|++|+|+.|++.+++| ..++|||++..+||-....+..++.++++++.++++.+++||+||||++|++||++|+.
T Consensus 456 ~~me~~~~~~Al~~I~~l-~~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 456 EAMEKVKLKQGLKTAMSI-SSEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HHHHhcCHHHHHHHHHHH-HHHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 999999999999999998 56799999999998433334445777888999999999999999999999999999973
No 36
>KOG0435|consensus
Probab=100.00 E-value=1.1e-53 Score=447.12 Aligned_cols=421 Identities=20% Similarity=0.257 Sum_probs=294.2
Q ss_pred CccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCCccccC-
Q psy1860 29 LQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLG- 107 (659)
Q Consensus 29 ~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~g- 107 (659)
+.+.||++ ++++||+.++||..-+|||+||++|+|+.+|++++++.++.-.. -+-...++.|+.++. +.|.|
T Consensus 319 ~~A~Np~t-----g~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~-~~~~~f~~~~K~~~~-~~~tn~ 391 (876)
T KOG0435|consen 319 CQAKNPVT-----GRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWII-CIEVIFTNFGKKNEQ-KAFTNL 391 (876)
T ss_pred eeeccCCC-----CceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEE-EEeeeecchhhhhcc-ccccch
Confidence 33455654 67999999999999999999999999999999999996552100 011123556665543 45677
Q ss_pred cccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhh
Q psy1860 108 LYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGN 187 (659)
Q Consensus 108 ~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~ 187 (659)
+...+|..+|++.++..|+.- +..+|
T Consensus 392 ~~~q~a~~~l~~~~~~~g~g~----~~vs~-------------------------------------------------- 417 (876)
T KOG0435|consen 392 DIRQNAALKLFQFAERKGVGG----YVVSY-------------------------------------------------- 417 (876)
T ss_pred hHHHHHHHHHHHHHHhcCCCc----ceecc--------------------------------------------------
Confidence 444568889999999988742 22111
Q ss_pred hhcCCCceEeeeccCCCccccEEEeCCCCeEEEecc--HHHHHHhhCCcccc-cccc-ccccccccCCCCCCCCCccccc
Q psy1860 188 WLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGS--IAELHRLSGISVEK-DLHR-ESVDSVTIPSVRPGKPPLRRVP 263 (659)
Q Consensus 188 ~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~-~~~~-~~~d~~~~~~~~~g~~~~~~~~ 263 (659)
.|+||.|||||+||+|||+.+|++|+.+.+..+ ...++++.+..+.+ .+.. ..+-++.|| .|| ++.+|++
T Consensus 418 ---kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP--~cg-~pAkRET 491 (876)
T KOG0435|consen 418 ---KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCP--RCG-EPAKRET 491 (876)
T ss_pred ---hhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCc--cCC-Ccccccc
Confidence 678999999999999999999999997655432 12333333332221 1111 111122333 456 4899999
Q ss_pred cccceeccCCCCccccccCCCCCc-----ccccccCCcceEeeccccchhH-----HHHHHHHHhhhc-CCCCCCeEEEe
Q psy1860 264 EVFDCWFESGSMPYAQLHFPFDNR-----RDFDDRFPADFIAEGIDQTRGW-----FYTLLVISTALF-KQAPFRNLIAN 332 (659)
Q Consensus 264 dvlDvWfdS~~~~~~~~~~~~~~~-----~~~~~~~p~d~~~~G~D~~~~w-----~~~~ll~~~~~~-~~~p~k~v~~h 332 (659)
|+||||+||++.|+--+ .|.+.. ..-.+|.|+|+|++|+++.--| |+.-++.+.++. ..+||+.++++
T Consensus 492 DTMDTFvDSsWYYlRyl-DpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~Q 570 (876)
T KOG0435|consen 492 DTMDTFVDSSWYYLRYL-DPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQ 570 (876)
T ss_pred cccchhhccceeeEeec-CCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhh
Confidence 99999999997665333 232211 2235899999999999997555 555556666554 46999999999
Q ss_pred ceeecC------CC-------------------------------CccccCCCCCCCCCCCCCcCCCchhhhhhcccccc
Q psy1860 333 GLVLAQ------DG-------------------------------QKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKM 375 (659)
Q Consensus 333 G~v~~~------~G-------------------------------~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~m 375 (659)
|+|++. .| +|||||++|+|||.+++++| |+|++|+|+
T Consensus 571 GmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~y-G~D~tRl~i----- 644 (876)
T KOG0435|consen 571 GMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEY-GVDTTRLYI----- 644 (876)
T ss_pred hcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHh-CchHHHHHH-----
Confidence 999873 12 59999999999999999999 999999999
Q ss_pred cccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHh-ccchh---hcccccccccCCCChhhHHHHHHHHHHHH
Q psy1860 376 SKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLA-NDAEE---KLSFQYNEAEGSTNIMDAWIISFSESLIE 451 (659)
Q Consensus 376 sk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~-n~~~~---~~~~~~~~~~~~~~~~d~~il~~l~~~~~ 451 (659)
+-.++| .++.+++ +..+.++.+++.+++.+. ++... +....+..........++-+.+..|.+++
T Consensus 645 ----lf~ap~----~~~~nW~---es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~ 713 (876)
T KOG0435|consen 645 ----LFAAPP----RDPINWN---ESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIK 713 (876)
T ss_pred ----HhhCCc----ccccccc---cccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 766666 7777776 788999999999996543 22221 11111111011223456678889999999
Q ss_pred HHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q psy1860 452 FVRKEMA-AYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530 (659)
Q Consensus 452 ~~~~~~e-~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L 530 (659)
+++++|+ .+.++.|++.+|.|.|.+.+-+-... +.. .....+|..+++||+|++||+|+|+|..|
T Consensus 714 ~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~---~h~-----------~~~~~al~~lv~mlaP~aPh~asE~Ws~l 779 (876)
T KOG0435|consen 714 QVTEHYEVLFSLNTAISDMMGLTNALKKALKIVL---VHS-----------PEFERALEALVIMLAPFAPHVASELWSAL 779 (876)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcC-----------hHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 9999998 56799999999999887665431100 000 12456778889999999999999999999
Q ss_pred hhhcCCCCCCc-eeccCCCCCCCC
Q psy1860 531 RHLTGRLERSI-HFIMMPQPNRGI 553 (659)
Q Consensus 531 ~~~~~~~~~sv-~~~~~P~~~~~~ 553 (659)
+. ..+. ....||++++.+
T Consensus 780 ~~-----~~~~~~~~~WP~vd~~~ 798 (876)
T KOG0435|consen 780 AN-----DLSWVSDVKWPEVDPDY 798 (876)
T ss_pred hc-----cccchhccCCccCChhh
Confidence 73 2232 333699887654
No 37
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=6.5e-53 Score=466.82 Aligned_cols=346 Identities=17% Similarity=0.245 Sum_probs=267.9
Q ss_pred cccCchHHHHHHHhcCCEeEeecccccC----------------CccccCCCcEEEcccCceeeechHhHHHHHHhcCC-
Q psy1860 110 VKDADKPIIKHLKEQSRLVSAGSVKHSY----------------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD- 172 (659)
Q Consensus 110 v~~a~~~ii~~L~~~g~l~~~~~~~h~~----------------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~- 172 (659)
..++.+.++..|.++|+++. .++...| +.|..||+|++++.+++|||+++++++.+++++++
T Consensus 166 h~~~vq~~f~~L~~~G~Iy~-~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~ 244 (616)
T PLN02224 166 HEAIVKEFYARVFANGDIYR-ADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQN 244 (616)
T ss_pred HHHHHHHHHHHHHHCCCEEE-eeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhC
Confidence 34677899999999999987 3444433 56888999999999999999999999999999863
Q ss_pred -ceEecCcccchhhhhhhc-CCCceEeeecc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCcccccccccccccccc
Q psy1860 173 -TYWVPEFVKEKRFGNWLR-EARDWAISRNR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTI 249 (659)
Q Consensus 173 -~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 249 (659)
..+.|+.. .+.+.+||+ +|+||||||++ .||+|+|. +.++
T Consensus 245 ~~~~~p~~~-~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~----~~~~-------------------------------- 287 (616)
T PLN02224 245 PRFVQPSYR-LNEVQSWIKSGLRDFSISRALVDWGIPVPD----DDKQ-------------------------------- 287 (616)
T ss_pred CCccCCHHH-HHHHHHHHhcCCCCccccCCCCCCceECCC----CCCc--------------------------------
Confidence 23568776 477889998 69999999987 89999993 3333
Q ss_pred CCCCCCCCCccccccccceeccCCCCccccccCCCCCc---ccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCC
Q psy1860 250 PSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNR---RDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQA 324 (659)
Q Consensus 250 ~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~---~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~ 324 (659)
|++||||+.+.|++.+++..... ..|..|||.|+|+.|+|+++|| +|++++++.++ .
T Consensus 288 ---------------viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~---~ 349 (616)
T PLN02224 288 ---------------TIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGL---E 349 (616)
T ss_pred ---------------EEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCC---C
Confidence 55588888888887776542211 1245689999999999999999 89999988764 4
Q ss_pred CCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhH
Q psy1860 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVW 404 (659)
Q Consensus 325 p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~ 404 (659)
++++|++|||++. +|+|||||+||+|+|.+++++| |+|++|||| ++.++. ++|.+|+ .+..++
T Consensus 350 ~P~~i~~~g~l~~-eG~KMSKS~GN~i~p~e~l~~y-gaD~~R~yL---------l~~~p~----~~d~~fs--~~~~~~ 412 (616)
T PLN02224 350 LPKMVFGHGFLTK-DGMKMGKSLGNTLEPFELVQKF-GPDAVRYFF---------LREVEF----GNDGDYS--EDRFIK 412 (616)
T ss_pred CCcEEEecccEec-CCccccccCCccCCHHHHHHHc-CcHHHHHHH---------HhcCCC----cCCCCCC--HHHHHH
Confidence 4499999999875 9999999999999999999999 999999999 776554 8999999 322211
Q ss_pred HH-HHHHHHHHHHhccchhhcc-----cccccc-cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q psy1860 405 SV-CLILKEKVLLANDAEEKLS-----FQYNEA-EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLT 477 (659)
Q Consensus 405 ~~-~~~~~~l~~l~n~~~~~~~-----~~~~~~-~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~ 477 (659)
.+ .++++ .++|+..+... +..... .......|++++++++++++.+.++|++|+|++|++.+++|+ ..+
T Consensus 413 ~~NseLan---~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~-~~~ 488 (616)
T PLN02224 413 IVNAHLAN---TIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG-NAG 488 (616)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHH
Confidence 11 11222 23333322111 110000 111234589999999999999999999999999999999996 559
Q ss_pred HHHHHHccccc--cCCC-ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 478 NWYVRMNRRRL--KGEG-GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 478 ~~Yle~~K~~l--~~~~-~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
|+|++..+||. +.+. ..+++..++++++++++.+++||+|||||+||+||++|+.
T Consensus 489 N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 489 NTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 99999999983 3222 2234567788999999999999999999999999999973
No 38
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.8e-53 Score=449.49 Aligned_cols=253 Identities=28% Similarity=0.491 Sum_probs=213.6
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccC-----------CccccCCCcEEEcccCceeeechHhHHHHHHhcCC--ceEec
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSY-----------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD--TYWVP 177 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~-----------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~--~~~~P 177 (659)
.+..+.++..|.++|++++.+ +...| -+|||||+|++++.++||||+++++++++++++++ ++|+|
T Consensus 117 ~~~v~~~f~~L~~~G~iy~~~-~~~~yc~~~~t~l~~~evc~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P 195 (382)
T cd00817 117 SRAVQEAFVRLYEKGLIYRDN-RLVNWCPKLRTAISDIEVCSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVP 195 (382)
T ss_pred HHHHHHHHHHHHHCCCEEeee-eEEeecCCcCCCCCcchhcccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEC
Confidence 456678999999999998743 22222 25899999999999999999999999999999987 89999
Q ss_pred CcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCC
Q psy1860 178 EFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKP 257 (659)
Q Consensus 178 ~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 257 (659)
++. ++++.+||++++|||||||++||+|||+|+|+++++.+......+..... . ...+++| |..
T Consensus 196 ~~~-~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~-~~~ 259 (382)
T cd00817 196 ERM-EKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKA---------A-----PEACVPC-GGE 259 (382)
T ss_pred hHH-HHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHh---------c-----cccccCC-Ccc
Confidence 998 58999999999999999999999999999999887755322222211110 0 0112223 556
Q ss_pred CccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeec
Q psy1860 258 PLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLA 337 (659)
Q Consensus 258 ~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~ 337 (659)
.++++++||||||||+++|+++++|+.+ +++|+++||+|+|++|+||+|||+..+++.+.++.+..||+++++||+|++
T Consensus 260 ~~~~~~~v~dvWfds~~~~~~~~~~~~~-~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~ 338 (382)
T cd00817 260 ELKQDEDVLDTWFSSSLWPFSTLGWPEE-TKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRD 338 (382)
T ss_pred CeeECCceeeeeecCCCcHHHHhCCCCc-chhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEEC
Confidence 8999999999999999999999999843 457999999999999999999999999999998888889999999999998
Q ss_pred CCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCccccc
Q psy1860 338 QDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPV 395 (659)
Q Consensus 338 ~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f 395 (659)
.+|+|||||+||+|+|.+++++| |+|++|||+ ++.+++ ++|.+|
T Consensus 339 ~~g~KMSKS~Gn~v~~~dll~~~-g~Da~R~~l---------l~~~~~----~~D~~f 382 (382)
T cd00817 339 EDGRKMSKSLGNVIDPLDVIDGY-GADALRFTL---------ASAATQ----GRDINL 382 (382)
T ss_pred CCCCCccccCCCCCCHHHHHHhc-CcHHHHHHH---------HhCCCc----cCCCCC
Confidence 89999999999999999999999 999999999 776555 788765
No 39
>KOG0436|consensus
Probab=100.00 E-value=4.2e-51 Score=406.92 Aligned_cols=389 Identities=17% Similarity=0.247 Sum_probs=298.3
Q ss_pred eeecCCCCChhhHHHHHhCCCCCCCCccccccCCC-ccccCC-------Ccccc---CcccccCchHHHHHHHhcCCEeE
Q psy1860 61 VVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDAS-GCFTAP-------VSHFL---GLYVKDADKPIIKHLKEQSRLVS 129 (659)
Q Consensus 61 ~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~-G~~~~~-------~~~~~---g~~v~~a~~~ii~~L~~~g~l~~ 129 (659)
+.+++..||..--.++...|+ ......|.. -.|... ..+|- .-++.++.++..+.+.++|.+++
T Consensus 81 fsTGTDEHGlKIqtaaatnG~-----~P~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 81 FSTGTDEHGLKIQTAAATNGR-----NPPELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred eecCCCccchhhhhhHhhcCC-----ChHHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceee
Confidence 344567888888888888887 223333321 111110 11221 12334556778889999999987
Q ss_pred eecccccC----------------C------ccccCCCcEEEcccCceeeechHhHHHHHHhcCC--ceEecCcccchhh
Q psy1860 130 AGSVKHSY----------------P------FCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD--TYWVPEFVKEKRF 185 (659)
Q Consensus 130 ~~~~~h~~----------------p------~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~--~~~~P~~~~~~~~ 185 (659)
+.|++.| | +.-.||+||.++.+++|||++++|++++.+++.+ -.+.|+.. .+..
T Consensus 156 -g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~-~~qV 233 (578)
T KOG0436|consen 156 -GDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYF-HNQV 233 (578)
T ss_pred -ecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHH-HHHH
Confidence 7888877 2 3446899999999999999999999999999864 45678775 5888
Q ss_pred hhhhc-CCCceEeee--cc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccc
Q psy1860 186 GNWLR-EARDWAISR--NR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRR 261 (659)
Q Consensus 186 ~~~l~-~l~Dw~ISR--qr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~ 261 (659)
..||+ +++|.+||| +| .||+|+| +|.+++||
T Consensus 234 l~~lktglpDlSISRpsarl~WGIPvP----~ddsQtIY----------------------------------------- 268 (578)
T KOG0436|consen 234 LSWLKTGLPDLSISRPSARLDWGIPVP----GDDSQTIY----------------------------------------- 268 (578)
T ss_pred HHHHHcCCCcccccChhhhcccCCCCC----CCCcceEE-----------------------------------------
Confidence 99998 899999999 66 9999999 56666665
Q ss_pred cccccceeccCCCCccccccCCC---CCcccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceee
Q psy1860 262 VPEVFDCWFESGSMPYAQLHFPF---DNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVL 336 (659)
Q Consensus 262 ~~dvlDvWfdS~~~~~~~~~~~~---~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~ 336 (659)
||||+.+.|+++++||. +.+..+..+||+.+|++|+||+||| +||++|+++++ +|++.|++||+++
T Consensus 269 ------VWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGl---plP~~I~vHghwt 339 (578)
T KOG0436|consen 269 ------VWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGL---PLPKMIFVHGHWT 339 (578)
T ss_pred ------EeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCC---CCccEEEEeeeee
Confidence 79999889999998874 2245678899999999999999999 89999999988 5569999999999
Q ss_pred cCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHH-H-H
Q psy1860 337 AQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKE-K-V 414 (659)
Q Consensus 337 ~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~-l-~ 414 (659)
. +|.|||||+||||||.+++++| |+|++|||| +..+.+ +.|.+|+ + +.+.+..|. + .
T Consensus 340 ~-ngmKMsKSLGNvvdP~~l~~ky-gvD~vRyfl---------Lr~~~l----~~Dgdy~--e----ekl~k~~n~~La~ 398 (578)
T KOG0436|consen 340 K-NGMKMSKSLGNVVDPFELVQKY-GVDAVRYFL---------LREGEL----GNDGDYS--E----EKLIKIVNAHLAN 398 (578)
T ss_pred e-cceecchhhccccCHHHHHHHh-CccceeeEe---------eecccc----CCCCCcc--H----HHHHHHHHHHHHH
Confidence 7 9999999999999999999999 999999999 877555 8999999 5 333333332 1 3
Q ss_pred HHhccchhhcc--cccccc-------cCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHcc
Q psy1860 415 LLANDAEEKLS--FQYNEA-------EGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNR 485 (659)
Q Consensus 415 ~l~n~~~~~~~--~~~~~~-------~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K 485 (659)
.++|+.++..+ +..+.. .......+.-+.+.++++.+.+.+.|+++.+..|++++...+++ .|-|++..+
T Consensus 399 ~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~-~ntlvq~~a 477 (578)
T KOG0436|consen 399 TLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA-GNTLVQQRA 477 (578)
T ss_pred HHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh-hhhhhhhcC
Confidence 45555555332 222211 00112234567888999999999999999999999999998776 788999999
Q ss_pred ccccCCC---ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 486 RRLKGEG---GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 486 ~~l~~~~---~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
||.-..+ +.......+..+.++++.+.++|+|+||.++.+++++|+-
T Consensus 478 PWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgv 527 (578)
T KOG0436|consen 478 PWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGV 527 (578)
T ss_pred CceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCC
Confidence 9843322 2234555677788999999999999999999999999973
No 40
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.4e-49 Score=412.88 Aligned_cols=221 Identities=52% Similarity=0.968 Sum_probs=196.2
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhc
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLR 190 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~ 190 (659)
.++...+++.|.++|+++..+ +++.| |+++++++||||+++++++++++++++++|+|+..+ +++.+||+
T Consensus 118 ~~~v~~~f~~L~~~G~iY~~~-----~~v~~----~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~-~~~~~~l~ 187 (338)
T cd00818 118 MESVWWVFKQLHEKGLLYRGY-----KVVPW----PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVK-NRFGNWLE 187 (338)
T ss_pred HHHHHHHHHHHHHCCCEeccC-----Ceeee----EEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHH-HHHHHHHh
Confidence 345678899999999998632 34455 999999999999999999999999999999999984 79999999
Q ss_pred CCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceec
Q psy1860 191 EARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWF 270 (659)
Q Consensus 191 ~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWf 270 (659)
+++|||||||++||||||+|+|++++.++. .++++|+||||
T Consensus 188 ~l~dw~iSR~~~WGip~P~~~~~~~~~~~~---------------------------------------~~~~~v~~vWf 228 (338)
T cd00818 188 NRRDWCISRQRYWGTPIPVWYCEDCGEVLV---------------------------------------RRVPDVLDVWF 228 (338)
T ss_pred cchhcceeeecccCceeeEEEecCCCeEEE---------------------------------------ecCCceEEEEE
Confidence 999999999999999999999987654331 24678999999
Q ss_pred cCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCC
Q psy1860 271 ESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNY 350 (659)
Q Consensus 271 dS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~ 350 (659)
||+++|++..+|+.+ .++|++|||+|++++|+||+++||..+++.++++.+..||+++++||++++.+|+|||||+||+
T Consensus 229 da~~~~~~~~~~~~~-~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~ 307 (338)
T cd00818 229 DSGSMPYAQLHYPFE-NEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNY 307 (338)
T ss_pred eCCCCHHHHcCCCCc-chhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCc
Confidence 999999998888744 3579999999999999999999999999999998889999999999999998999999999999
Q ss_pred CCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCccccc
Q psy1860 351 PDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPV 395 (659)
Q Consensus 351 i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f 395 (659)
|+|.+++++| |+|++|||+ ++.+++ ++|.+|
T Consensus 308 i~~~~~~~~~-~~D~~R~~l---------~~~~~~----~~d~~~ 338 (338)
T cd00818 308 VDPQEVVDKY-GADALRLWV---------ASSDVY----AEDLRF 338 (338)
T ss_pred CCHHHHHHHc-CcHHHHHHH---------HhCCCc----cCCCCC
Confidence 9999999999 999999999 777555 788765
No 41
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=3.1e-39 Score=336.76 Aligned_cols=200 Identities=37% Similarity=0.632 Sum_probs=174.6
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhc
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLR 190 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~ 190 (659)
.+...++++.|.++|+++... .|+ +.++|||++++++++++++++++..+.|+.. ++++.+||+
T Consensus 113 ~~~v~~~f~~L~~~G~iY~~~-----~~v----------~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~-~~~~~~~l~ 176 (312)
T cd00668 113 SKAVELIFSRLYEKGLIYRGT-----HPV----------RITEQWFFDMPKFKEKLLKALRRGKIVPEHV-KNRMEAWLE 176 (312)
T ss_pred HHHHHHHHHHHHHCCCEEeec-----cee----------EeeeeEEEEcHHHHHHHHHHHhcCCcCChHH-HHHHHHHHh
Confidence 456678999999999987632 111 7889999999999999999998888999987 478999999
Q ss_pred CCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceec
Q psy1860 191 EARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWF 270 (659)
Q Consensus 191 ~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWf 270 (659)
+..|||||||++||+|+|= +++||||
T Consensus 177 ~~~d~~isR~~~WG~~~P~------------------------------------------------------~~i~~Wf 202 (312)
T cd00668 177 SLLDWAISRQRYWGTPLPE------------------------------------------------------DVFDVWF 202 (312)
T ss_pred CCCCeEEeccCCCCCcCCc------------------------------------------------------ccccchh
Confidence 8779999999999999991 3678999
Q ss_pred cCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCC
Q psy1860 271 ESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNY 350 (659)
Q Consensus 271 dS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~ 350 (659)
||+++|++.++|+.+ +++|.++||.|++++|+||+++|+...+.++.++.+..||+++++|||+++++|+|||||+||+
T Consensus 203 ds~~~~~~~~~~~~~-~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~ 281 (312)
T cd00668 203 DSGIGPLGSLGYPEE-KEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNV 281 (312)
T ss_pred hccHHHHHHcCCCcc-chhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCc
Confidence 999999998888743 4568899999999999999999999988888888777788999999999997779999999999
Q ss_pred CCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCccccc
Q psy1860 351 PDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPV 395 (659)
Q Consensus 351 i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f 395 (659)
|+|.+++++| |+|++|||+ ++..++ ++|.+|
T Consensus 282 v~~~d~~~~~-~~da~R~~l---------~~~~~~----~~d~~~ 312 (312)
T cd00668 282 IDPSDVVEKY-GADALRYYL---------TSLAPY----GDDIRL 312 (312)
T ss_pred CCHHHHHHHc-CcHHHHHHH---------HhcCCc----cCCCCC
Confidence 9999999999 999999999 766555 777765
No 42
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.9e-37 Score=323.52 Aligned_cols=211 Identities=21% Similarity=0.347 Sum_probs=176.9
Q ss_pred cCchHHHHHHHhcCCEeEeecccccCCccccCCCcE-EEcccCceeeechHhHHHHHHhcCCc--eEecCcccchhhhhh
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPL-IYKAVPSWFIRVQHMNQDLLKCNSDT--YWVPEFVKEKRFGNW 188 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v-~~~~~~qwFi~~~~~k~~~~~~~~~~--~~~P~~~~~~~~~~~ 188 (659)
+...++++.|.++|+++.. ++...+|.+|++.+ +++.++||||+++++++++++++++. .++|+.. ++.+.+|
T Consensus 99 ~~v~~i~~~L~ekG~iY~~---~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~~ 174 (319)
T cd00814 99 EIVQEFFKKLYENGYIYEG---EYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENA-RNEVLSW 174 (319)
T ss_pred HHHHHHHHHHHHCCCEEee---eeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHH-HHHHHHH
Confidence 3457899999999998753 23457899999876 89999999999999999999998753 3789887 4788999
Q ss_pred hcC-CCceEeeecc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCcccccccc
Q psy1860 189 LRE-ARDWAISRNR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVF 266 (659)
Q Consensus 189 l~~-l~Dw~ISRqr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvl 266 (659)
|++ ++|||||||+ +||+|+|. +. .+++
T Consensus 175 l~~~l~d~~isR~~~~WGipvp~----~~-----------------------------------------------~~~~ 203 (319)
T cd00814 175 LKEGLKDLSITRDLFDWGIPVPL----DP-----------------------------------------------GKVI 203 (319)
T ss_pred HhCCCcccCCCccCcccCeeCCC----CC-----------------------------------------------CcEE
Confidence 995 9999999999 99999993 22 2466
Q ss_pred ceeccCCCCccccccCCCCCc---ccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC
Q psy1860 267 DCWFESGSMPYAQLHFPFDNR---RDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ 341 (659)
Q Consensus 267 DvWfdS~~~~~~~~~~~~~~~---~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~ 341 (659)
+|||||.+.|++..+++.+.. ..|...||.++++.|+|+++|| +|++++++.+ ..|++.+++|||++. +|+
T Consensus 204 yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~---~~~~~~~~~~~~~~~-~g~ 279 (319)
T cd00814 204 YVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAG---LPLPTRIVAHGYLTV-EGK 279 (319)
T ss_pred EEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCC---CCCCcEeeeeeeEEE-CCe
Confidence 789999988888777653322 1356778999999999999999 8988888765 366799999999998 899
Q ss_pred ccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCccccc
Q psy1860 342 KMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPV 395 (659)
Q Consensus 342 KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f 395 (659)
|||||+||+|+|.+++++| |+|++|||+ +..++. ++|.+|
T Consensus 280 kmSkS~gn~i~~~~~l~~~-~~d~~R~~l---------~~~~~~----~~d~~f 319 (319)
T cd00814 280 KMSKSRGNVVDPDDLLERY-GADALRYYL---------LRERPE----GKDSDF 319 (319)
T ss_pred eecccCCcccCHHHHHHHc-CchHHHHHH---------HhcCCC----CCCCCC
Confidence 9999999999999999999 999999999 777555 788776
No 43
>KOG1247|consensus
Probab=100.00 E-value=2.7e-35 Score=293.58 Aligned_cols=341 Identities=16% Similarity=0.223 Sum_probs=257.0
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhcCC----ceEecCcccchhhh
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD----TYWVPEFVKEKRFG 186 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~----~~~~P~~~~~~~~~ 186 (659)
.+||- +.+...|.++.. .+-.-|.|..|..-.+++.+.+.|+.++++++++.+++++ -.|.++. .+..+
T Consensus 161 d~ARG---Dqcd~cG~l~N~--~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na--~~it~ 233 (567)
T KOG1247|consen 161 DDARG---DQCDKCGKLVNA--AELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNA--QNITR 233 (567)
T ss_pred ccccc---hhhhhhhhhcCH--HHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccch--HHHHH
Confidence 45554 356667776653 3334699999999999999999999999999999998764 3576665 37888
Q ss_pred hhhc-CCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccc
Q psy1860 187 NWLR-EARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEV 265 (659)
Q Consensus 187 ~~l~-~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dv 265 (659)
.||+ +++.+||||++.||+|+|. +. -...|
T Consensus 234 sWlk~gl~pRCiTRDLkWGtpVPl---e~----------------------------------------------fk~KV 264 (567)
T KOG1247|consen 234 SWLKDGLKPRCITRDLKWGTPVPL---EK----------------------------------------------FKDKV 264 (567)
T ss_pred HHHHccccccccccccccCCCcCh---hh----------------------------------------------hcccE
Confidence 9998 8999999999999999995 10 12458
Q ss_pred cceeccCCCCccccccCCCCCcccccccCCc----c-eEeeccccchhH--HHHHHHHHhhhcCCCCC-CeEEEeceeec
Q psy1860 266 FDCWFESGSMPYAQLHFPFDNRRDFDDRFPA----D-FIAEGIDQTRGW--FYTLLVISTALFKQAPF-RNLIANGLVLA 337 (659)
Q Consensus 266 lDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~----d-~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~-k~v~~hG~v~~ 337 (659)
|+||||+.+.|.+.+. +-.++|++||.. + +.+.|+|.+.|| ++|+...++.- +.+- +++.+..++.-
T Consensus 265 fYVWFDA~IGYlsit~---~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~e--n~t~v~~l~aTeYLny 339 (567)
T KOG1247|consen 265 FYVWFDAPIGYLSITK---NYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEE--NYTVVHHLSATEYLNY 339 (567)
T ss_pred EEEEEcCcceEEEeeh---hhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCC--Cchhheeechhhhhcc
Confidence 9999999999988764 334689999942 2 578899999999 67776666532 2222 78888888776
Q ss_pred CCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHh
Q psy1860 338 QDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLA 417 (659)
Q Consensus 338 ~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~ 417 (659)
+..|+|||+|-+|...++.+.-++++++|||| ++.+|+ ++|..|+ |.+-....-.+++ .+|+
T Consensus 340 -E~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYL---------l~~RPE----ssDs~Fs-w~df~~k~nseLl---~NLG 401 (567)
T KOG1247|consen 340 -EDGKFSKSRGVGVFGNDAQDTGIPASVWRYYL---------LYIRPE----SSDSAFS-WDDFVLKVNSELL---NNLG 401 (567)
T ss_pred -ccCcccccccccccccccccCCCCHHHHHHHH---------hhccCc----ccCCcCc-HHHHHHHhhHHHH---HHHH
Confidence 77799999999999999999877999999999 888776 8899999 8622111111222 3445
Q ss_pred ccchhhcccc---ccc--ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCC
Q psy1860 418 NDAEEKLSFQ---YNE--AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEG 492 (659)
Q Consensus 418 n~~~~~~~~~---~~~--~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~ 492 (659)
|+.++...|. ++. +......-|+-+++.++.+..+..++||.-++++|++.+|+. ....|.|++..+..-....
T Consensus 402 NFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~i-s~~GNqylQ~~~~~k~~~~ 480 (567)
T KOG1247|consen 402 NFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEI-SRRGNQYLQENTDNKLYEE 480 (567)
T ss_pred HHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhcccccchhhh
Confidence 5444433221 111 111233348889999999999999999999999999999997 5558999987764322222
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy1860 493 GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLR 531 (659)
Q Consensus 493 ~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 531 (659)
+.+++..+..+...++..+..||+|+||.++.+|..+|+
T Consensus 481 ~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqln 519 (567)
T KOG1247|consen 481 SRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLN 519 (567)
T ss_pred cccccceeeehhhHHHHHHHHHhccccccchHHHHHHhC
Confidence 344556666777889999999999999999999999995
No 44
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.2e-37 Score=327.82 Aligned_cols=262 Identities=20% Similarity=0.294 Sum_probs=182.6
Q ss_pred CceeecCCCCChhhHHHHHhCCCCCCCCccccccCCC-ccccC-------CCcccc---CcccccCchHHHHHHHhcCCE
Q psy1860 59 TGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDAS-GCFTA-------PVSHFL---GLYVKDADKPIIKHLKEQSRL 127 (659)
Q Consensus 59 TG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~-G~~~~-------~~~~~~---g~~v~~a~~~ii~~L~~~g~l 127 (659)
+=.+.++..||..--..|.+.|+ ++...+|.. ..+.+ ..+.|. .....++.+++.+.|.++|.+
T Consensus 39 v~~~tGtDehG~~i~~~A~~~g~-----~p~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I 113 (391)
T PF09334_consen 39 VLFVTGTDEHGSKIETAAEKQGI-----DPEEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYI 113 (391)
T ss_dssp EEEEEEEE-SSHHHHHHHHHTTS------HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHHTTSE
T ss_pred eeeEEecchhhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCce
Confidence 34567788999998889999888 444444321 01110 011222 123456778999999999999
Q ss_pred eEeecccccC-----------------Ccc----------ccCCCcE-----------------EEcccCceeeechHhH
Q psy1860 128 VSAGSVKHSY-----------------PFC----------WRSDTPL-----------------IYKAVPSWFIRVQHMN 163 (659)
Q Consensus 128 ~~~~~~~h~~-----------------p~~----------~r~g~~v-----------------~~~~~~qwFi~~~~~k 163 (659)
++ .+++..| |+| ..||.++ +++.++||||++++++
T Consensus 114 ~~-~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~ 192 (391)
T PF09334_consen 114 YK-REYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFR 192 (391)
T ss_dssp EE-EEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGH
T ss_pred ee-cccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehHHhH
Confidence 87 4455544 433 2455555 5889999999999999
Q ss_pred HHHHHhcCCc-eEecCcccchhhhhhhc-CCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCcccccccc
Q psy1860 164 QDLLKCNSDT-YWVPEFVKEKRFGNWLR-EARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHR 241 (659)
Q Consensus 164 ~~~~~~~~~~-~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 241 (659)
+.+.+++++. .+.|+.. ++.+.+||+ +|+||||||...||+|+| ++.++++
T Consensus 193 ~~L~~~l~~~~~~~~~~~-~~~~~~~l~~~L~d~~Is~~~~WGI~vP----~~~~~~i---------------------- 245 (391)
T PF09334_consen 193 DQLREWLESNPDFPPPRV-REIVRNWLKEGLPDLSISRPLDWGIPVP----GDPGQVI---------------------- 245 (391)
T ss_dssp HHHHHHHHHSTTSSHHHH-HHHHHHHHHT----EE-ECTTSSSEEET----TEEEEEE----------------------
T ss_pred HHHHHHHhcCCCCCChhH-HHHHHHHhhcccCceeeecCCCCcceee----ccCCceE----------------------
Confidence 9999998643 2355555 467779998 599999999999999999 4444444
Q ss_pred ccccccccCCCCCCCCCccccccccceeccCCCCccccccCCC---CCcccccccCC-----cceEeeccccchhH--HH
Q psy1860 242 ESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPF---DNRRDFDDRFP-----ADFIAEGIDQTRGW--FY 311 (659)
Q Consensus 242 ~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~---~~~~~~~~~~p-----~d~~~~G~D~~~~w--~~ 311 (659)
+||||+.+.|++.+++.. .+.+.|..||+ .-+++.|+|+++|| +|
T Consensus 246 -------------------------yVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~ 300 (391)
T PF09334_consen 246 -------------------------YVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYW 300 (391)
T ss_dssp --------------------------HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHH
T ss_pred -------------------------EEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHh
Confidence 467777776666665542 23456777782 12999999999999 89
Q ss_pred HHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCc
Q psy1860 312 TLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGR 391 (659)
Q Consensus 312 ~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~ 391 (659)
++|+++.++ .+++++++|||++. +|+|||||+||+|+|.+++++| |+|++|||| ++.++. ++
T Consensus 301 pa~l~a~~~---~lP~~i~~~~~~~~-~g~K~SkS~gn~i~~~~~~~~~-~~D~~R~~L---------~~~~~~----~~ 362 (391)
T PF09334_consen 301 PAMLLAAGL---PLPRRIVVHGFLTL-DGEKMSKSRGNVIWPDDLLEEY-GADALRYYL---------AREGPE----GQ 362 (391)
T ss_dssp HHHHHHCTB------SEEEEE--EEE-TTCCEETTTTESSBHHHHHHHH--HHHHHHHH---------HHHSST----TS
T ss_pred HHHHhcccC---CCCCEEEeeeeEEE-CCeeccccCCcccCHHHHHHhC-ChHHHHHHH---------HHhcCC----CC
Confidence 999999665 44499999999997 9999999999999999999999 999999999 776555 89
Q ss_pred ccccc
Q psy1860 392 LCPVH 396 (659)
Q Consensus 392 d~~f~ 396 (659)
|.+|+
T Consensus 363 d~~F~ 367 (391)
T PF09334_consen 363 DSDFS 367 (391)
T ss_dssp -EEE-
T ss_pred CCCCC
Confidence 99999
No 45
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=7.8e-33 Score=287.72 Aligned_cols=185 Identities=28% Similarity=0.409 Sum_probs=148.2
Q ss_pred cCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeec--hHhHHHHHHhcCCceEecCcccchhhhhhh
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRV--QHMNQDLLKCNSDTYWVPEFVKEKRFGNWL 189 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~--~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l 189 (659)
+..+.++..|.++|.++... ....+| +.++||||++ +++++++.++++++.+.|+..+ +.+.+|+
T Consensus 101 ~~v~~~f~~L~~~G~iy~~~---~~v~~~---------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~-~~~~~~l 167 (314)
T cd00812 101 KFTQWLFLKLYEKGLAYKKE---APVNWC---------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVR-AMQENWI 167 (314)
T ss_pred HHHHHHHHHHHHCCCEEecC---ceeeee---------CccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHH-HHHHHHh
Confidence 45567888999999998632 234566 8899999999 9999999999988888899874 7888998
Q ss_pred cCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCcccccccccee
Q psy1860 190 REARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCW 269 (659)
Q Consensus 190 ~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvW 269 (659)
+ ||||+.||+|+|+ .+++|||
T Consensus 168 ~------isR~~~wGipvP~-----------------------------------------------------~~~i~~w 188 (314)
T cd00812 168 G------CSRQRYWGTPIPW-----------------------------------------------------TDTMESL 188 (314)
T ss_pred e------eeeecCCcCCcCc-----------------------------------------------------ccccccc
Confidence 7 9999999999994 1256789
Q ss_pred ccCCC---CccccccCCC-------CCcccccccCCcceEeeccccchhHHHHHHHHHhhhcC-----CCCCCeEEEece
Q psy1860 270 FESGS---MPYAQLHFPF-------DNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFK-----QAPFRNLIANGL 334 (659)
Q Consensus 270 fdS~~---~~~~~~~~~~-------~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~-----~~p~k~v~~hG~ 334 (659)
|||.+ .|.+...... .++++|++|||.|+++.|+||+++|+...++.+.++.+ ..|++++.+|||
T Consensus 189 ~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~ 268 (314)
T cd00812 189 SDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGM 268 (314)
T ss_pred cccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecce
Confidence 99886 3333222111 12346889999999999999999995444444444433 246699999999
Q ss_pred eecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 335 VLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 335 v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
|+. +|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 269 v~~-~g~KmSkS~Gn~v~~~dll~~~-~~Da~R~~l 302 (314)
T cd00812 269 VLL-EGEKMSKSKGNVVTPDEAIKKY-GADAARLYI 302 (314)
T ss_pred Eec-CccccCCcCCCCCCHHHHHHHh-CcHHHHHHH
Confidence 997 9999999999999999999999 999999999
No 46
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.90 E-value=5.8e-23 Score=230.14 Aligned_cols=168 Identities=19% Similarity=0.084 Sum_probs=133.6
Q ss_pred CCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEe-ceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhccc
Q psy1860 294 FPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIAN-GLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDG 372 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~h-G~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~ 372 (659)
.|.|+|.+|.|+++.|+-..+.+|.+++++.||.+.++| |||.. +|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i-~G~KMSKSLGNfItp~dlLeky-gaDaLR~~l-- 342 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHI-KGLKMSKSLKNFITIRQALSKY-TARQIRLLF-- 342 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEe-ccchhhhcCCCcccHHHHHHHc-ChHHHHHHH--
Confidence 489999999999999999999999999999899889999 99875 9999999999999999999999 999999999
Q ss_pred ccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHH-HHhccchhhcccccccccCCCChhhHHHHHHHHHHHH
Q psy1860 373 QKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKV-LLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIE 451 (659)
Q Consensus 373 ~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~-~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~ 451 (659)
++. ++ .+|++|+ .+.+....+..+++. .+.++.......... ........|+|++..++.+..
T Consensus 343 -------Ls~-~~----~~dldFS---~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~-~~~~~~~~d~~Ll~~l~~~~~ 406 (651)
T PTZ00399 343 -------LLH-KW----DKPMNYS---DESMDEAIEKDKVFFNFFANVKIKLRESELT-SPQKWTQHDFELNELFEETKS 406 (651)
T ss_pred -------Hhc-CC----CCCCccC---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCHHHHHHHHHHHHHHH
Confidence 754 44 8899999 455666655544441 123322111000000 011235678999999999999
Q ss_pred HHHHHH-HhcchhhHHHHHHHHHHHHHHHHHH
Q psy1860 452 FVRKEM-AAYRLYTVVPRLVLFIDNLTNWYVR 482 (659)
Q Consensus 452 ~~~~~~-e~~~~~~a~~~l~~f~~~~~~~Yle 482 (659)
.+.++| ++|+++.|+..+++|++. +|+|++
T Consensus 407 ~v~~Am~Ddfnt~~Al~~L~eLv~~-~N~yi~ 437 (651)
T PTZ00399 407 AVHAALLDNFDTPEALQALQKLISA-TNTYLN 437 (651)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHh
Confidence 999999 789999999999999865 788885
No 47
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.90 E-value=5.9e-23 Score=191.82 Aligned_cols=149 Identities=27% Similarity=0.494 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhcc
Q psy1860 439 DAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAP 517 (659)
Q Consensus 439 d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P 517 (659)
|+|++++++.++++++++|++|+|+.|++.++.|+ +++|+||++.+|++++++.+...++ ++.+++.+++.++++|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 89999999999999999999999999999999985 8999999999999998876544455 889999999999999999
Q ss_pred chhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCcee
Q psy1860 518 YTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEI-ERSVKRMQSVVELGRVIRERVTIPIKYPLRE 589 (659)
Q Consensus 518 ~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~-e~~~~~~~~~i~~~r~~r~~~~i~~~~pl~~ 589 (659)
||||+||++|++|.....+..+|++.+.||. +....+... +..++.++.+++.+|++|++.+++.+.|++.
T Consensus 80 ~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v 151 (153)
T PF08264_consen 80 FMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEKNIKPKEPLKV 151 (153)
T ss_dssp TSHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCCEESTTCGEEE
T ss_pred CCcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCc
Confidence 9999999999888432225678999999998 554455556 7788899999999999999999999988663
No 48
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.89 E-value=4.1e-22 Score=191.67 Aligned_cols=174 Identities=41% Similarity=0.628 Sum_probs=135.2
Q ss_pred hhhhHHHHH-HHHHHHHHhccch---hhccccccc---ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q psy1860 400 PVHVWSVCL-ILKEKVLLANDAE---EKLSFQYNE---AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLF 472 (659)
Q Consensus 400 ~~~~~~~~~-~~~~l~~l~n~~~---~~~~~~~~~---~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f 472 (659)
++.+++.++ |++|+++.....- ....+.+.. .....+..|+|+++++++++++++++|++|+|+.|++.++.|
T Consensus 3 ~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f 82 (183)
T cd07961 3 EKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEF 82 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356777777 9999854322110 001121111 112457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCC
Q psy1860 473 IDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRG 552 (659)
Q Consensus 473 ~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~ 552 (659)
++.+++||++.+|++++++.....+..++.++..++..++++|+|||||+|||+|++++...+...++|+.++||.+.+.
T Consensus 83 ~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~~~~~ 162 (183)
T cd07961 83 IDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVDES 162 (183)
T ss_pred HHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCCCccc
Confidence 98778999999999998764333456678899999999999999999999999999997311112468999999998877
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy1860 553 IIDQEIERSVKRMQSVVELGR 573 (659)
Q Consensus 553 ~~d~~~e~~~~~~~~~i~~~r 573 (659)
+.|+.++..++.++.+++.+|
T Consensus 163 ~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 163 LIDEELEEAMELVREIVELGR 183 (183)
T ss_pred ccCHHHHHHHHHHHHHHHhhC
Confidence 788999998888888887654
No 49
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.85 E-value=6.5e-20 Score=175.86 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=129.6
Q ss_pred hhhhHHHHHHHHHHHHHhccchh-hccccccc---ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-H
Q psy1860 400 PVHVWSVCLILKEKVLLANDAEE-KLSFQYNE---AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-D 474 (659)
Q Consensus 400 ~~~~~~~~~~~~~l~~l~n~~~~-~~~~~~~~---~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~ 474 (659)
.+.+++++++++++++...+... ..++.+.. ........|+|++++++.++++++++|++|+|++|++.+++|+ +
T Consensus 3 ~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~ 82 (180)
T cd07960 3 DEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTV 82 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888888888443222110 01122111 0124567899999999999999999999999999999999998 4
Q ss_pred HHHHHHHHHccccccCCC-ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCC
Q psy1860 475 NLTNWYVRMNRRRLKGEG-GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGI 553 (659)
Q Consensus 475 ~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~ 553 (659)
++|++|++.+|+|++++. ....+..+..+++.+++.++++|+|||||+||++|+.|+.. ...++|+.++||.+++.+
T Consensus 83 ~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~--~~~~~v~~~~wP~~~~~~ 160 (180)
T cd07960 83 DLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE--KKEESVFLEDWPELPEEW 160 (180)
T ss_pred HHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc--CCCCCeeccCCCCCcccc
Confidence 799999999999988642 22234567789999999999999999999999999999631 014689999999998888
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1860 554 IDQEIERSVKRMQSVV 569 (659)
Q Consensus 554 ~d~~~e~~~~~~~~~i 569 (659)
.|++++..++.++++.
T Consensus 161 ~~~~~~~~~~~~~~i~ 176 (180)
T cd07960 161 KDEELEEKWEKLLALR 176 (180)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8998888887776643
No 50
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.84 E-value=1.8e-20 Score=204.50 Aligned_cols=155 Identities=15% Similarity=0.025 Sum_probs=132.9
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhccccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQK 374 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~ 374 (659)
|.|+|.+|+|++++|+...++++.++++ .||.++++|+.+++.+|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 220 ~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~-~~d~lR~~l---- 293 (463)
T PRK00260 220 TFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKY-DPEVLRFFL---- 293 (463)
T ss_pred CcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHc-CchHhHHHH----
Confidence 7899999999999999999999999998 8999999998888889999999999999999999999 999999999
Q ss_pred ccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHH
Q psy1860 375 MSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVR 454 (659)
Q Consensus 375 msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~ 454 (659)
++. ++ .++++|+ .+.++.+++++++++...+... ....|+|++++++.+++.+.
T Consensus 294 -----l~~-~~----~~~~~fs---~~~l~~a~~~~~rl~~~~~~~~-------------~~~~d~~~~~~l~~~~~~~~ 347 (463)
T PRK00260 294 -----LSA-HY----RSPLNFS---EEALEQAKKALERLYNALAETA-------------LGEDDEALLAELEEFKERFI 347 (463)
T ss_pred -----HhC-CC----CCCCccC---HHHHHHHHHHHHHHHHHHHHhh-------------hccchhhHHHHHHHHHHHHH
Confidence 754 45 8899999 5678888888888754433211 01357889999999999999
Q ss_pred HHHH-hcchhhHHHHHHHHHHHHHHHHHH
Q psy1860 455 KEMA-AYRLYTVVPRLVLFIDNLTNWYVR 482 (659)
Q Consensus 455 ~~~e-~~~~~~a~~~l~~f~~~~~~~Yle 482 (659)
++|+ +|+++.|+..+++|+++ .++|++
T Consensus 348 ~al~ddln~~~Al~~l~~lv~~-~n~~~~ 375 (463)
T PRK00260 348 EAMDDDFNTPEALAVLFELARE-INRALE 375 (463)
T ss_pred HHHHhcccHHHHHHHHHHHHHH-HHHHhh
Confidence 9995 99999999999999876 466764
No 51
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.73 E-value=1.8e-17 Score=173.69 Aligned_cols=147 Identities=13% Similarity=-0.072 Sum_probs=115.9
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l~~~ 373 (659)
+.|+|.+|.|++++|+...+.++.+++++.||.++++||.+++.+|+|||||+||+|+|.++++. + +++++|||+
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~-d~~~lR~~l--- 289 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGV-DPAAIRLAL--- 289 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccC-ChhheeEEE---
Confidence 57999999999999999999999999998899999999999999999999999999999997643 4 555999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFV 453 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~ 453 (659)
++. ++ .++++|+ ++.++.+++.++++....... . . . .+..+.+.+
T Consensus 290 ------ls~-~y----r~~l~fs---~e~l~~a~~~l~r~~~~~~~~--------~----~-~--------~~~~~~~~f 334 (384)
T PRK12418 290 ------LAG-HY----RADREWT---DAVLAEAEARLARWRAAAALP--------A----G-P--------DAADVVARV 334 (384)
T ss_pred ------ecc-CC----CCCcccC---HHHHHHHHHHHHHHHHHHhcc--------c----c-c--------hHHHHHHHH
Confidence 743 44 8899999 567777777777763221110 0 0 0 123345677
Q ss_pred HHHHH-hcchhhHHHHHHHHHHHHHHHHH
Q psy1860 454 RKEMA-AYRLYTVVPRLVLFIDNLTNWYV 481 (659)
Q Consensus 454 ~~~~e-~~~~~~a~~~l~~f~~~~~~~Yl 481 (659)
.++|+ ++++..|+..+++++.. .|.|+
T Consensus 335 ~~al~dDlnt~~a~~~l~~~~~~-~n~~~ 362 (384)
T PRK12418 335 RAALADDLDTPGALAAVDGWATD-ALEGG 362 (384)
T ss_pred HHHHHhcCChHHHHHHHHHHHHH-HHhcc
Confidence 78886 79999999999999865 55554
No 52
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.71 E-value=4.3e-17 Score=171.57 Aligned_cols=142 Identities=13% Similarity=-0.049 Sum_probs=114.4
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l~~~ 373 (659)
+.|+|.+|.|++++|+...+.++.+++++.||.++++||..++.+|+|||||+||+|+|.++++. | ++|++|||+
T Consensus 241 ~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~-dp~~lRl~l--- 316 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGV-DPAAIRLGL--- 316 (411)
T ss_pred ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCC-CcccEEEEE---
Confidence 46999999999999999999999999998899999999988889999999999999999999886 8 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFV 453 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~ 453 (659)
+++ ++ .++++|+ ++.++.+++.++++........ . . .+..+...+
T Consensus 317 ------ls~-~Y----r~pl~fs---~e~l~~a~~~l~rl~~~~~~~~------------~-~--------~~~~~~~~~ 361 (411)
T TIGR03447 317 ------LAG-HY----RQDRDWT---DAVLAEAEARLARWRAALAATD------------A-P--------DATDLIARL 361 (411)
T ss_pred ------ecC-CC----CCCCccC---HHHHHHHHHHHHHHHHHHhhcc------------c-c--------hHHHHHHHH
Confidence 744 44 8899999 6777888777777632211000 0 0 122344566
Q ss_pred HHHHH-hcchhhHHHHHHHHHHH
Q psy1860 454 RKEMA-AYRLYTVVPRLVLFIDN 475 (659)
Q Consensus 454 ~~~~e-~~~~~~a~~~l~~f~~~ 475 (659)
.++|+ ++++..|+..+++++..
T Consensus 362 ~~al~dDln~p~a~~~l~~~~~~ 384 (411)
T TIGR03447 362 RQHLANDLDTPAALAAVDNWAAA 384 (411)
T ss_pred HHHHHhcCChHHHHHHHHHHHHH
Confidence 67775 79999999999998754
No 53
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.66 E-value=1.9e-16 Score=172.52 Aligned_cols=154 Identities=12% Similarity=-0.005 Sum_probs=112.5
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhccccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQK 374 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~ 374 (659)
|.|+|.+|.|++++|+...+.++.+++++ ||.+.++|+.++..+|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 219 ~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~-~~dalR~~l---- 292 (465)
T TIGR00435 219 QIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNY-DPEILRYFL---- 292 (465)
T ss_pred CceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHC-CHHHHHHHH----
Confidence 68999999999999999999999999885 666665554445569999999999999999999999 999999999
Q ss_pred ccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHH
Q psy1860 375 MSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVR 454 (659)
Q Consensus 375 msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~ 454 (659)
++. ++ .++.+|+ .+.++.+++.+++++......... .... . ... +. .......+.+.+.
T Consensus 293 -----l~~-~~----~~~l~fs---~~~l~~a~~~~~rl~~~~~~~~~~--~~~~--~-~~~--~~-~~~~~~~~~~~f~ 351 (465)
T TIGR00435 293 -----LSV-HY----RSPLDFS---EELLEAAKNALERLYKALRVLDTT--LAYS--G-NQS--LN-KFPDEKEFEARFV 351 (465)
T ss_pred -----HhC-CC----CCCCccC---HHHHHHHHHHHHHHHHHHHHHHhh--hccc--c-ccc--cc-cchhHHHHHHHHH
Confidence 754 44 8899999 577888888888874332211100 0000 0 000 00 0011223456677
Q ss_pred HHHH-hcchhhHHHHHHHHHHH
Q psy1860 455 KEMA-AYRLYTVVPRLVLFIDN 475 (659)
Q Consensus 455 ~~~e-~~~~~~a~~~l~~f~~~ 475 (659)
++|+ ++++..|+..+++++..
T Consensus 352 ~al~dDlnt~~a~~~l~~~~~~ 373 (465)
T TIGR00435 352 EAMDDDLNTANALAVLFELAKS 373 (465)
T ss_pred HHHhhccCHHHHHHHHHHHHHH
Confidence 7785 89999999999999865
No 54
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.63 E-value=1.9e-16 Score=148.92 Aligned_cols=92 Identities=26% Similarity=0.418 Sum_probs=66.8
Q ss_pred ecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccC--------
Q psy1860 22 QGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVD-------- 93 (659)
Q Consensus 22 ~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd-------- 93 (659)
.|- +.|..+.||++ ++.+||+.++||.+++|||+||+|||||++||++|++|||+.+ +++.+.+
T Consensus 81 ~Gv-~tg~~aihP~t-----~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~--~Vi~~~~~~~~~~~~ 152 (185)
T PF13603_consen 81 EGV-FTGLYAIHPLT-----GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIK--QVIKPKDDNEEIDNK 152 (185)
T ss_dssp -EE-EEEEEEE-TTT-----S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT--------EEBSSSS---STT
T ss_pred ccC-cCCCEEECCCC-----CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCee--EEEcCCCCccccccc
Confidence 444 56678889996 5689999999999999999999999999999999999998543 2333333
Q ss_pred -----CCccccCCCccccCcccccCchHHHHHHH
Q psy1860 94 -----ASGCFTAPVSHFLGLYVKDADKPIIKHLK 122 (659)
Q Consensus 94 -----~~G~~~~~~~~~~g~~v~~a~~~ii~~L~ 122 (659)
++|.+. ++++|.||+..+|+++|++.|+
T Consensus 153 ~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 153 QEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp SS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred ccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 347776 5689999999999999999986
No 55
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.60 E-value=3.4e-16 Score=152.56 Aligned_cols=75 Identities=25% Similarity=0.157 Sum_probs=71.1
Q ss_pred CCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 294 FPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.|.|++++|.|++++|+..+++++.+++++ ||.++++||.+++.+|+|||||+||+|+|.|++++| |+|++|||+
T Consensus 127 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~-~~da~R~~~ 201 (213)
T cd00672 127 ETFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKY-DPEVLRLAL 201 (213)
T ss_pred CCccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHc-CHHHHHHHH
Confidence 368999999999999999999999999988 899999998888889999999999999999999999 999999999
No 56
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.60 E-value=1.4e-14 Score=128.60 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=91.8
Q ss_pred CchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHH
Q psy1860 398 WEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRL-VLFIDNL 476 (659)
Q Consensus 398 w~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l-~~f~~~~ 476 (659)
|.++.++++.+++++++.+.+....+ ..+ ....+..|+|+++++++++++++++|++|+|++|++.+ ++|.+ .
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~--~~~---~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~-~ 74 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET--EGE---LEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQN-D 74 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc--cCC---ccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-H
Confidence 44677888999999986554321110 011 12346789999999999999999999999999999997 77765 6
Q ss_pred HHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q psy1860 477 TNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530 (659)
Q Consensus 477 ~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L 530 (659)
+++|++..+++ .++.++.++++.++++|+|||||+||++|+.|
T Consensus 75 ~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 75 LDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 88999987775 23457899999999999999999999999865
No 57
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.58 E-value=3.4e-15 Score=163.56 Aligned_cols=147 Identities=15% Similarity=0.044 Sum_probs=113.5
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCC---------------CC-CeEEEeceeecCCCCccccCCCCCCCCCCCCC
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQA---------------PF-RNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF 358 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~---------------p~-k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~ 358 (659)
+.|+|.+|.|+++.|.-.-+.++.+.+|+. || +..+.+|||+. +|+|||||+||+|+|.++++
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~v-dGeKMSKSLGN~it~~dlLe 524 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRV-DGEKMSKSLGNFFTIREVLK 524 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEee-CCCccCCCCCCcCCHHHHHH
Confidence 479999999999999988888887776652 57 66677788885 99999999999999999999
Q ss_pred cCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHh-ccchhhcccccccccCCCCh
Q psy1860 359 KNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLA-NDAEEKLSFQYNEAEGSTNI 437 (659)
Q Consensus 359 ~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~-n~~~~~~~~~~~~~~~~~~~ 437 (659)
+| |+|++|||+ +++ ++ .++++|+ ++.++.+++.+++++... +... . . ..
T Consensus 525 ~y-gpdalRl~l---------Lss-hY----RspL~fS---~e~Le~Ak~~l~Rl~~~l~~~~~------~---~---~~ 574 (699)
T PRK14535 525 QY-DPEVVRFFI---------LRA-HY----RSPLNYS---DAHLDDAKGALTRLYTTLKNTPA------A---E---FM 574 (699)
T ss_pred hC-CHHHHHHHH---------HcC-CC----CCCCCcC---HHHHHHHHHHHHHHHHHHHhhhh------c---c---ch
Confidence 99 999999999 664 45 8899999 688888888888874322 2110 0 0 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHH
Q psy1860 438 MDAWIISFSESLIEFVRKEMA-AYRLYTVVPRLVLFIDNL 476 (659)
Q Consensus 438 ~d~~il~~l~~~~~~~~~~~e-~~~~~~a~~~l~~f~~~~ 476 (659)
....+..+.+.+.++|+ ++++..|+..+++++..+
T Consensus 575 ----~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~i 610 (699)
T PRK14535 575 ----LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEV 610 (699)
T ss_pred ----hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 01223445567788886 799999999999987653
No 58
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.5e-15 Score=155.86 Aligned_cols=148 Identities=16% Similarity=0.052 Sum_probs=113.8
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
..|+|.+|.|+++.|.-.-+.++.+.+|..|| +.-+.+|||.- +|+|||||+||+++..+++++| ++.+|||++
T Consensus 221 ~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i-~geKMSKSLGNfiti~d~l~~~-~p~~lR~~l--- 295 (464)
T COG0215 221 TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNI-DGEKMSKSLGNFITVRDLLKKY-DPEVLRLFL--- 295 (464)
T ss_pred CcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeee-cCcCcccccCCeeEHHHHHhhc-CHHHHHHHH---
Confidence 46999999999999999999999999998998 44555567765 9999999999999999999999 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHH-HhccchhhcccccccccCCCChhhHHHHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVL-LANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEF 452 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~-l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~ 452 (659)
+++ .. .++++|| ++.++.++..++++.. +.+..... .. .... ........
T Consensus 296 ------ls~-HY----R~pl~fs---ee~L~~A~~~l~rl~~~~~~~~~~~----~~---~~~~--------~~~~~~~~ 346 (464)
T COG0215 296 ------LSS-HY----RSPLDFS---EELLEEAKKALERLYNALRRLRDLA----GD---AELA--------DLKEFEAR 346 (464)
T ss_pred ------HHH-Hh----CCccccC---HHHHHHHHHHHHHHHHHHHHHHhhc----cc---cccc--------hhHHHHHH
Confidence 654 33 7889999 6888888888888733 22221100 00 0000 23444556
Q ss_pred HHHHHH-hcchhhHHHHHHHHHHHH
Q psy1860 453 VRKEMA-AYRLYTVVPRLVLFIDNL 476 (659)
Q Consensus 453 ~~~~~e-~~~~~~a~~~l~~f~~~~ 476 (659)
+.++|+ +|++..|++.+.+++...
T Consensus 347 f~~al~DDfnt~~al~~l~~l~~~~ 371 (464)
T COG0215 347 FREALDDDFNTPKALAVLFELAKEI 371 (464)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHH
Confidence 777775 899999999999987653
No 59
>PLN02946 cysteine-tRNA ligase
Probab=99.56 E-value=9.2e-15 Score=159.50 Aligned_cols=165 Identities=15% Similarity=0.001 Sum_probs=114.8
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhccccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQK 374 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~ 374 (659)
+.|+|.+|.|+++.|...-+.++.+..+....+.-+.||||+. +|+|||||+||+|++.+++++| |+|++|||+
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~~-~G~KMSKSlGN~itl~dll~~y-~~dalR~~l---- 350 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTV-DSEKMSKSLGNFFTIRQVIDLY-HPLALRLFL---- 350 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEEe-CCCCcCCcCCCcCCHHHHHHhc-Cccceeeee----
Confidence 5799999999999999888888888776544466677899995 9999999999999999999999 999999999
Q ss_pred ccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHH-HHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHH
Q psy1860 375 MSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKV-LLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFV 453 (659)
Q Consensus 375 msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~-~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~ 453 (659)
++. .+ .++++|+ .+.++...+.+.++. .+.+..... .-.... ..... .+.-+...+..+...+
T Consensus 351 -----Ls~-hy----r~~l~fs---~e~L~~a~~~l~~l~~~~~~~~~~l-~~~~~~-~~~~~-~~~~~~~~~~~~~~~f 414 (557)
T PLN02946 351 -----LGT-HY----RSPINYS---DVQLESASERIFYIYQTLHDCEESL-QQHDST-FEKDS-VPPDTLNCINKFHDEF 414 (557)
T ss_pred -----ecc-CC----CCCcEec---HHHHHHHHHHHHHHHHHHHHHHHHh-hhhccc-ccccc-cchhhHHHHHHHHHHH
Confidence 664 34 7899999 455666655444442 122111000 000000 00000 1111223445566778
Q ss_pred HHHHH-hcchhhHHHHHHHHHHHHHHHHHH
Q psy1860 454 RKEMA-AYRLYTVVPRLVLFIDNLTNWYVR 482 (659)
Q Consensus 454 ~~~~e-~~~~~~a~~~l~~f~~~~~~~Yle 482 (659)
.++|+ ++++..|+..+++++.. .|-++.
T Consensus 415 ~~Al~DDlntp~Al~~l~~~vk~-~N~~~~ 443 (557)
T PLN02946 415 VTSMSDDLHTPVALAALSEPLKT-INDLLH 443 (557)
T ss_pred HHHHHhccChHHHHHHHHHHHHH-HHHHhh
Confidence 88886 89999999999999866 445553
No 60
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.53 E-value=8.6e-14 Score=125.76 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=84.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCC-ChHhHHHHHHHHHHHHHHHHH
Q psy1860 435 TNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEG-GPADCKVALNSLTKVLFTMVR 513 (659)
Q Consensus 435 ~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~~~ 513 (659)
....|+|+++++++++++++++|++|+|++|++.+++|+ +++++|++..|||....+ +.++++.++.++.++++.+++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA-RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999997 569999999999865543 334567788899999999999
Q ss_pred HhccchhHHHHHHHHHh
Q psy1860 514 VMAPYTPFLCEHLYQNL 530 (659)
Q Consensus 514 lL~P~~P~~aEeiw~~L 530 (659)
+|+|||||+||++|+.|
T Consensus 113 lL~P~~P~~aeei~~~l 129 (129)
T cd07957 113 LLSPFMPETAEKILDQL 129 (129)
T ss_pred HhcCCCChHHHHHHHhC
Confidence 99999999999999865
No 61
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.52 E-value=2.1e-13 Score=124.24 Aligned_cols=130 Identities=26% Similarity=0.352 Sum_probs=101.0
Q ss_pred hhhhHHHHHHHHHHHHHhccchh-hccccccc-ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HH
Q psy1860 400 PVHVWSVCLILKEKVLLANDAEE-KLSFQYNE-AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFID-NL 476 (659)
Q Consensus 400 ~~~~~~~~~~~~~l~~l~n~~~~-~~~~~~~~-~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~-~~ 476 (659)
++.+.+.++++++++.+...... ...+.... ........|+++++.++.+++++.++|++|+|++|++.++++++ ++
T Consensus 3 ~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~ 82 (135)
T cd07962 3 EKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDF 82 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 56778899999999665432211 00011100 01233567899999999999999999999999999999999985 48
Q ss_pred HHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q psy1860 477 TNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530 (659)
Q Consensus 477 ~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L 530 (659)
+|+|++..+||.... +.+++...+.++.++++.++++|+|||||+|+++|+.|
T Consensus 83 ~N~Yi~~~~pW~~~~-~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 83 CDWYLELVKPRLYGE-DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred hHHHHHHhhHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 999999999985443 23356678889999999999999999999999999865
No 62
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.50 E-value=6.6e-14 Score=151.34 Aligned_cols=161 Identities=13% Similarity=0.007 Sum_probs=111.1
Q ss_pred cceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhccccc
Q psy1860 296 ADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSSDGQK 374 (659)
Q Consensus 296 ~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l~~~~ 374 (659)
.|+|.+|.|++++|.-..+.++.++++. ||-++.+|+..+..+|+|||||+||+|++.+++++ | +++++||++
T Consensus 234 ~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~-~~~alR~~l---- 307 (490)
T PRK14536 234 CDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGF-QPLDYRFFL---- 307 (490)
T ss_pred eeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCC-CHHHHHHHH----
Confidence 5899999999999998888888888775 78777777777777999999999999999999998 9 999999999
Q ss_pred ccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHH-Hhccchhhccccc--cccc-CC-CChhhHHHHHHHHHH
Q psy1860 375 MSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVL-LANDAEEKLSFQY--NEAE-GS-TNIMDAWIISFSESL 449 (659)
Q Consensus 375 msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~-l~n~~~~~~~~~~--~~~~-~~-~~~~d~~il~~l~~~ 449 (659)
++. ++ .++++|+ .+.++...+.+.++.. +.++......... .... .. ....+.-....+..+
T Consensus 308 -----ls~-~y----r~~l~Fs---~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (490)
T PRK14536 308 -----LGG-HY----RSQLAFS---WEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELL 374 (490)
T ss_pred -----HhC-CC----CCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHH
Confidence 664 34 8899999 4566666665555521 2211100000000 0000 00 000000011234456
Q ss_pred HHHHHHHHH-hcchhhHHHHHHHHHHH
Q psy1860 450 IEFVRKEMA-AYRLYTVVPRLVLFIDN 475 (659)
Q Consensus 450 ~~~~~~~~e-~~~~~~a~~~l~~f~~~ 475 (659)
...+.++|+ ++++..|+..+++++..
T Consensus 375 ~~~f~~al~dDlntp~Al~~l~~~~~~ 401 (490)
T PRK14536 375 LTDFRAALEDDFSTPKALSELQKLVKD 401 (490)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 677888886 89999999999999754
No 63
>KOG2007|consensus
Probab=99.48 E-value=1.1e-13 Score=143.08 Aligned_cols=166 Identities=17% Similarity=0.091 Sum_probs=127.1
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCe-EEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRN-LIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~-v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
..|+|.+|.|+.+.|.-.-+.++.+.+...+|-+ .+..|++.- +|+|||||++|+|+..+++++| .+++||+++
T Consensus 258 ~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i-~g~KMSKSLkNFiTIke~Lk~~-sp~qLRl~f--- 332 (586)
T KOG2007|consen 258 QLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTI-NGEKMSKSLKNFITIKEALKKY-SPRQLRLAF--- 332 (586)
T ss_pred ccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeee-ccchhhhhhccceeHHHHHHhc-CHHHHHHHH---
Confidence 4699999999999999999999999999999954 455577775 9999999999999999999999 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHH---HHHhccchhhcccccccccCCCChhhHHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEK---VLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLI 450 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l---~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~ 450 (659)
+.. .+.++++|+ +..++.+..+.+.+ |.......+ . .......+..+..++..+....
T Consensus 333 ------l~~-----~wr~~ldYs---~s~m~~a~q~e~~~~~ff~~~~al~~---~--~~~~~~~~~~e~~l~~~~~~t~ 393 (586)
T KOG2007|consen 333 ------LLH-----QWRSPLDYS---DSTMEQALQLEKSLNNFFLDVKALLR---G--AKPFEKLSEKEAELLEDFGKTQ 393 (586)
T ss_pred ------HHH-----HhcCcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHh---c--cchhhccChHHHHHHHhhhhHH
Confidence 543 247788998 56566555444443 221111110 0 0002245667888899999988
Q ss_pred HHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHHHcc
Q psy1860 451 EFVRKEM-AAYRLYTVVPRLVLFIDNLTNWYVRMNR 485 (659)
Q Consensus 451 ~~~~~~~-e~~~~~~a~~~l~~f~~~~~~~Yle~~K 485 (659)
..+..++ ++++...++..+.++++. +|-|+....
T Consensus 394 ~~vh~al~d~~dT~~v~~~~~~lvs~-~N~~i~~~~ 428 (586)
T KOG2007|consen 394 TAVHAALCDNFDTPRVMEAIRELVSQ-GNAYIRESG 428 (586)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHhh-hhHHHHHhc
Confidence 8888777 699999999999998765 888987654
No 64
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.45 E-value=8.5e-13 Score=117.03 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=88.6
Q ss_pred CchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q psy1860 398 WEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLT 477 (659)
Q Consensus 398 w~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~ 477 (659)
|+++.+.++++++++++.+......+. .+..........|+|++++++++++++.++|++|+|++|++.+++|++. .
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~-~ 77 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL--AAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNA-L 77 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc--cccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHH-H
Confidence 446778899999999865433211110 0000011345679999999999999999999999999999999999866 6
Q ss_pred HHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q psy1860 478 NWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530 (659)
Q Consensus 478 ~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L 530 (659)
+.|++..++ ++.++.++++.++++|+|||||+||++|++|
T Consensus 78 n~~~~~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 78 YKYKKKDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHhhccccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 667642211 5578899999999999999999999999865
No 65
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.41 E-value=8.6e-13 Score=141.99 Aligned_cols=159 Identities=11% Similarity=0.029 Sum_probs=108.3
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l~~~ 373 (659)
..|+|.+|+|++++|.-..+.++.+..+..+.+..+.+|+++. +|+|||||+||+|++.+++++ | +++++||++
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~-~g~KMSKSlGN~i~l~dll~~~~-~~~alR~~l--- 307 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIM-EYEKMSKSNNNFITIKDLEDQGF-SPLDFRYFC--- 307 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEe-cCceecccCCCcccHHHHHhcCC-ChhHHHHHH---
Confidence 3699999999999998888888877776544466666778876 999999999999999999986 9 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHH-HhccchhhcccccccccCCCChhhHHHHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVL-LANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEF 452 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~-l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~ 452 (659)
++. ++ .++++|+ .+.++..+..++++.. +.++.......... ...... +.........+...
T Consensus 308 ------ls~-~y----r~~l~Fs---~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~ 370 (481)
T PRK14534 308 ------LTA-HY----RTQLKFT---FNNLKACKIARENMLNKLTYFYSSLDQFDLN-LLNKDL--ENIEFSLEKEYYDS 370 (481)
T ss_pred ------HhC-CC----CCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cccccc--ccchhhhHHHHHHH
Confidence 655 33 7899999 5677777766666532 22211100000000 000000 00000112234467
Q ss_pred HHHHHH-hcchhhHHHHHHHHHHH
Q psy1860 453 VRKEMA-AYRLYTVVPRLVLFIDN 475 (659)
Q Consensus 453 ~~~~~e-~~~~~~a~~~l~~f~~~ 475 (659)
+.++|+ ++++..|+..+++++..
T Consensus 371 f~~Al~DDlNtp~Al~~l~~~~k~ 394 (481)
T PRK14534 371 FLEKIAFDLNIPQGLALLWDIIKD 394 (481)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHH
Confidence 777885 89999999999999765
No 66
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.39 E-value=2.6e-12 Score=142.57 Aligned_cols=197 Identities=14% Similarity=0.059 Sum_probs=125.5
Q ss_pred cceEeeccccchhHHHHHHHHHhhhcCCCCCC-eEEEe---ceeecCCCCccccCCCCCCCCCCCCCc-CCCc-------
Q psy1860 296 ADFIAEGIDQTRGWFYTLLVISTALFKQAPFR-NLIAN---GLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIA------- 363 (659)
Q Consensus 296 ~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k-~v~~h---G~v~~~~G~KMSKS~GN~i~p~~~i~~-y~ga------- 363 (659)
.-+++.|.||. .||...+... ...|..|.+ .++.| |+|++++|+|||||+||+|+|.|++++ + |+
T Consensus 274 ~~i~V~g~~q~-~hf~~~~~~~-~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~-g~~~~~~~~ 350 (507)
T PRK01611 274 RVIYVVGADHH-GHFKRLKAAL-KALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAV-GRARELIEE 350 (507)
T ss_pred EEEEEECCChH-HHHHHHHHHH-HHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHH-HHHHHHHHh
Confidence 34889999984 3554444333 333444543 55666 999999999999999999999999999 9 99
Q ss_pred ---------hhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHH---Hhccch---h-h-ccc
Q psy1860 364 ---------NGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVL---LANDAE---E-K-LSF 426 (659)
Q Consensus 364 ---------D~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~---l~n~~~---~-~-~~~ 426 (659)
|++||++ ++. .+ .+|.+|+ |+ . +.....- +-.++ .....+ . . ...
T Consensus 351 ~~~a~~vgidAiR~~~---------L~~-~~----~~~~~Fd-~~-~-~~~~~~~-~~~yvqYa~aR~~sil~k~~~~~~ 412 (507)
T PRK01611 351 KEIAEAVGIDAVRYFD---------LSR-SR----DKDLDFD-LD-L-ALSFEGN-NPPYVQYAHARICSILRKAAEAGI 412 (507)
T ss_pred hhhhhhhccceeEehh---------hhc-CC----CCCCccC-HH-H-HHhhcCC-CcHHHHHHHHHHHHHHHhhhccCc
Confidence 9999999 655 34 8899998 43 2 1111110 00011 111000 0 0 000
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCC-h-HhHHHHHHHH
Q psy1860 427 QYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGG-P-ADCKVALNSL 504 (659)
Q Consensus 427 ~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~-~-~~~~~~~~~l 504 (659)
.... ....+..|+|++.++..+...+.+++++|+++.+++.+++|++.+++||=+ .+ +..+.. . ..+.......
T Consensus 413 ~~~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~-~~--l~~~~~~~~~~Rl~L~~a~ 488 (507)
T PRK01611 413 DLLL-ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNR-VL--LKDEEEELRNARLALVKAT 488 (507)
T ss_pred cccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH-CC--CCCChHHHHHHHHHHHHHH
Confidence 0000 011256799999999999999999999999999999999999999999943 22 332211 1 1122223344
Q ss_pred HHHHHHHHHHhcc
Q psy1860 505 TKVLFTMVRVMAP 517 (659)
Q Consensus 505 ~~~l~~~~~lL~P 517 (659)
..+|...+.||.-
T Consensus 489 ~~vl~~~l~lLgi 501 (507)
T PRK01611 489 AQVLKNGLDLLGI 501 (507)
T ss_pred HHHHHHHHHhcCC
Confidence 5566666666643
No 67
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.32 E-value=6.5e-13 Score=133.05 Aligned_cols=93 Identities=23% Similarity=0.127 Sum_probs=69.2
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEe-ceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIAN-GLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~h-G~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
+.|+|.+|.|+++.|.-..+.++.+.++ .||-+..+| |++.. +|+|||||+||++...+++++| +++++||++
T Consensus 206 ~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~~-~g~KMSKSlgN~~~i~dll~~~-~~~~lR~~~--- 279 (300)
T PF01406_consen 206 TFDIHGGGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLNV-DGEKMSKSLGNFITIRDLLKKY-SPDALRLFL--- 279 (300)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EEE-TTCE--TTTT---BHHHHHTTS--HHHHHHHH---
T ss_pred CceEEccccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHhh-cCccccccCCCEEEHHHHhhcC-CHHHHHHHH---
Confidence 5799999999999999999999999988 777666666 77765 9999999999999999999999 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVC 407 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~ 407 (659)
++. .. .++++|+ ++.++.++
T Consensus 280 ------l~~-hY----r~~l~~s---~~~l~~A~ 299 (300)
T PF01406_consen 280 ------LST-HY----RKPLNFS---EENLEEAK 299 (300)
T ss_dssp ------HTS--T----TS-EEE----HHHHHHHH
T ss_pred ------hcC-CC----CCccccC---HHHHHHhc
Confidence 655 33 7889999 45555543
No 68
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.19 E-value=1.5e-11 Score=128.15 Aligned_cols=102 Identities=18% Similarity=0.046 Sum_probs=77.3
Q ss_pred CcceEeeccccc--hhHHHHHHHHHh-hhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcc
Q psy1860 295 PADFIAEGIDQT--RGWFYTLLVIST-ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSD 371 (659)
Q Consensus 295 p~d~~~~G~D~~--~~w~~~~ll~~~-~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~ 371 (659)
.+|+=+.|+||. .||+......+- .+...+| ..++||||++.+|+|||||+||+|+|.++++.+ |+|++||++
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P--~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~-~~dalR~~~- 302 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPP--VPVMYEFIGLKGGGKMSSSKGNVITPSDWLEVA-PPEVLRYLY- 302 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCC--eEEEeeeEEeCCCCccCCCCCCcCCHHHHHHHh-ChHHHHHHH-
Confidence 578888999997 678888777776 4444556 338899999966679999999999999999999 999999999
Q ss_pred cccccccccCCCCCccccCcccccccC-chhhhHHHHHHHHHH
Q psy1860 372 GQKMSKSKKNYPDPMEVRGRLCPVHVW-EPVHVWSVCLILKEK 413 (659)
Q Consensus 372 ~~~msk~~~~~~~~~~~~~~d~~f~lw-~~~~~~~~~~~~~~l 413 (659)
++...+ ..|++|+ | ....++.+.++.+++
T Consensus 303 --------l~~~~~----~~~i~Fd-~~~~~~~dey~r~~~~y 332 (353)
T cd00674 303 --------ARRKNP----EKHIGFD-LDILRLYDEYDRLERKY 332 (353)
T ss_pred --------HhCCCC----CCCCCcC-hhHHHHHHHHHHHHHHH
Confidence 655323 6788887 2 123445555555554
No 69
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.14 E-value=3.6e-11 Score=132.47 Aligned_cols=86 Identities=22% Similarity=0.162 Sum_probs=70.1
Q ss_pred CcceEeeccccch-hHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTR-GWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~-~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
-+|+-+.|+||+. .|.....+....+..++|+. ++|||+++++|+|||||+||+|+|.++++.| |+|++|||+
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~-~pd~lR~~l--- 307 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYA-PPESLRLFM--- 307 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHC-CHHHHHHHH---
Confidence 5889999999999 88555544443444456754 7899999966999999999999999999999 999999888
Q ss_pred cccccccCCCCCccccCcccccc
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVH 396 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~ 396 (659)
+....+ .+|++|+
T Consensus 308 ------~~~~~~----~~~~~f~ 320 (510)
T PRK00750 308 ------FARPKP----AKRLDFD 320 (510)
T ss_pred ------HhCCCC----CCCCccc
Confidence 545344 7888888
No 70
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.11 E-value=6.7e-10 Score=124.88 Aligned_cols=194 Identities=8% Similarity=-0.016 Sum_probs=120.3
Q ss_pred eEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCC-----------------------
Q psy1860 298 FIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPM----------------------- 354 (659)
Q Consensus 298 ~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~----------------------- 354 (659)
++|.|.||. +||..+.....++ |-.+.+++.+|||.+. +|.|||||+||+|+|.
T Consensus 331 I~V~g~~q~-~h~~~v~~~l~~l-G~~~~~~l~h~~~~~V-~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~ 407 (566)
T TIGR00456 331 IYVWGSDHH-LHIAQFFAILEKL-GFYKKKELIHLNFGMV-PLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEE 407 (566)
T ss_pred EEEecCcHH-HHHHHHHHHHHHc-CCCCCCceEEEEEEEE-ECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 899999985 3554443322222 2234489999999997 8899999999999998
Q ss_pred CCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcc---------
Q psy1860 355 EPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLS--------- 425 (659)
Q Consensus 355 ~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~--------- 425 (659)
++++.+ |.|++||++ ++.. + ..|.+|+ |+ ..+..-.+.. ..++|...+...
T Consensus 408 ~~~~~v-g~dAvRy~~---------L~~~-~----~~d~~Fd-~d-~~~~~~~n~~---~yiqYa~aR~~SIlrK~~~~~ 467 (566)
T TIGR00456 408 DVADAV-GIGAVRYFD---------LSQN-R----ETHYVFD-WD-AMLSFEGNTA---PYIQYAHARICSILRKADIDG 467 (566)
T ss_pred HHHHHh-cccceeeHH---------hhcC-C----CCCceec-HH-HHhccCCCCc---hhHHHHHHHHHHHHHhccccc
Confidence 788889 999999999 6653 3 7889998 43 1111100000 111221111000
Q ss_pred ccc-ccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCCh--HhHHHHHH
Q psy1860 426 FQY-NEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGP--ADCKVALN 502 (659)
Q Consensus 426 ~~~-~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~--~~~~~~~~ 502 (659)
... .......+..++.++..+..+...+.+++++++++.++..+++++..+ |.|++.. +.+..++.. ..+.....
T Consensus 468 ~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~-N~yy~~~-~Vl~~~~~~~~~~RL~L~~ 545 (566)
T TIGR00456 468 EKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLF-SSFYKAC-PVLDAENENLAAARLALLK 545 (566)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHHhcC-ccCCCCCHHHHHHHHHHHH
Confidence 000 000112245677888899999999999999999999999999997765 4455543 223222211 12222334
Q ss_pred HHHHHHHHHHHHhc
Q psy1860 503 SLTKVLFTMVRVMA 516 (659)
Q Consensus 503 ~l~~~l~~~~~lL~ 516 (659)
....+|...+.||.
T Consensus 546 a~~~vl~~gL~lLG 559 (566)
T TIGR00456 546 ATRQTLKNGLQLLG 559 (566)
T ss_pred HHHHHHHHHHHhcC
Confidence 44556666666664
No 71
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.99 E-value=5.5e-09 Score=92.20 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHHHHhccchh-hcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q psy1860 401 VHVWSVCLILKEKVLLANDAEE-KLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNW 479 (659)
Q Consensus 401 ~~~~~~~~~~~~l~~l~n~~~~-~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~ 479 (659)
+.+.++.+++|+++.+...... ................|+|++++++++++.++++|++|+|+.|++.+++|++.+ ++
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~-n~ 80 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL-NW 80 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cH
Confidence 3457777888887544332111 000111000012356799999999999999999999999999999999998775 89
Q ss_pred HHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccch
Q psy1860 480 YVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYT 519 (659)
Q Consensus 480 Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~ 519 (659)
|++..|||.+.+ .....++.++.++++.++++|+|||
T Consensus 81 y~~~~~pw~~~~---~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 81 YLDELKPALQTE---ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHhhHHHcCc---hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999997755 2344567789999999999999996
No 72
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.44 E-value=1.8e-07 Score=102.64 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=59.9
Q ss_pred CcceEeeccccch---hHHHHHHHHHhhhcCCCCCCeEEEecee-ecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTR---GWFYTLLVISTALFKQAPFRNLIANGLV-LAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~---~w~~~~ll~~~~~~~~~p~k~v~~hG~v-~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+|+=.-|+|++- +|...+-.....+.+.+| .. +..+|+ ++.+|+|||||+||+|++.++++.+ |+|++||++
T Consensus 225 gV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P-~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~-~pdalR~~~ 301 (515)
T TIGR00467 225 KVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPP-VT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEVY-TPEITRFLF 301 (515)
T ss_pred CcccccCCCCccCccCCchhHHHHHHHHhCCCCC-cC-cEEEEEEEcCCCccccCCCCCCccHHHHHHHc-CHHHHHHHH
Confidence 4566667999874 244333222223334445 22 335665 6668899999999999999999999 999999998
Q ss_pred ccccccccccCCCCCccccCcccccc
Q psy1860 371 DGQKMSKSKKNYPDPMEVRGRLCPVH 396 (659)
Q Consensus 371 ~~~~msk~~~~~~~~~~~~~~d~~f~ 396 (659)
++. .+ .++++|+
T Consensus 302 ---------l~~-~~----~~~ldFd 313 (515)
T TIGR00467 302 ---------ART-KP----EFHISFD 313 (515)
T ss_pred ---------hcc-CC----CCCCcCC
Confidence 554 34 7788888
No 73
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.31 E-value=4.1e-06 Score=94.11 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=115.3
Q ss_pred eEeeccccchhHHHHHHHHHhhhcCCCCCC--eEEEeceeecCCCCccccCCCCCCCCCCCCCc----------------
Q psy1860 298 FIAEGIDQTRGWFYTLLVISTALFKQAPFR--NLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK---------------- 359 (659)
Q Consensus 298 ~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k--~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~---------------- 359 (659)
++|.|.||. +||..+....-++ |..+-. ..+..|+|+. +|+||||.+||+|..+|+++.
T Consensus 328 IyV~g~dq~-~h~~~l~~~~~~l-g~~~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 328 LYVVGPEQS-LHFNQFFTVLKKL-GYTWVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEeCCcHH-HHHHHHHHHHHHc-CCCcccCeEEEeeeeEec-CCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 899999984 4665554433333 322222 3577888986 899999999999999999996
Q ss_pred ---------CCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHH---HHHHHHHHhccch--hhcc
Q psy1860 360 ---------NLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCL---ILKEKVLLANDAE--EKLS 425 (659)
Q Consensus 360 ---------y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~---~~~~l~~l~n~~~--~~~~ 425 (659)
- |.|++||++ ++. ++ ..+..|+ |+ ..+..-.+ +++ +.....++ +...
T Consensus 405 ~~~~~~a~~v-g~~Airy~~---------l~~-~~----~~~~~Fd-~d-~~l~~~g~t~pYiQ--Ya~AR~~SIlrka~ 465 (562)
T PRK12451 405 KQKEEVAKQV-GVGAVIFHD---------LKN-ER----MHNIEFS-LE-NMLKFEGETGPYVQ--YTHARACSILRKES 465 (562)
T ss_pred ccHHHHHHHh-ccceeeeHH---------hhc-CC----CCCceEC-HH-HHhCcCCCccHHHH--HHHHHHHHHHHhcC
Confidence 5 799999999 655 23 6788887 54 11100000 000 00000000 0000
Q ss_pred ccccc-ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCC-hHhHHHHHHH
Q psy1860 426 FQYNE-AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGG-PADCKVALNS 503 (659)
Q Consensus 426 ~~~~~-~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~-~~~~~~~~~~ 503 (659)
..... ...-.+..+.-++..+..+...+.+++++++++.++..++++...+..+| +..+ .+ .+.. ...+.....+
T Consensus 466 ~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy-~~~~-Vl-~~~~~~~~RL~L~~a 542 (562)
T PRK12451 466 VEFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYY-GNVR-IL-EESAEKDSRLALVYA 542 (562)
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhCC-CC-CCHHHHHHHHHHHHH
Confidence 01110 01112455677888999999999999999999999999999987766655 4332 23 2211 1112222333
Q ss_pred HHHHHHHHHHHhc
Q psy1860 504 LTKVLFTMVRVMA 516 (659)
Q Consensus 504 l~~~l~~~~~lL~ 516 (659)
...+|...+.||.
T Consensus 543 ~~~vL~~gL~LLG 555 (562)
T PRK12451 543 VTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHhcC
Confidence 4455555566653
No 74
>PLN02286 arginine-tRNA ligase
Probab=98.12 E-value=3.5e-05 Score=86.81 Aligned_cols=199 Identities=8% Similarity=-0.004 Sum_probs=119.2
Q ss_pred ceEeeccccchhHHHHHHHHHhhhcCCC-C----CCeEEEeceeecCCCCccccCCCCCCCCCCCCCc------------
Q psy1860 297 DFIAEGIDQTRGWFYTLLVISTALFKQA-P----FRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK------------ 359 (659)
Q Consensus 297 d~~~~G~D~~~~w~~~~ll~~~~~~~~~-p----~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~------------ 359 (659)
-++|.|.||. +||..+....-++ |.. + --.++..|+|+..+|+||||.+||+|+.+|++++
T Consensus 330 ~IyVvg~~q~-~hf~~v~~~l~~l-G~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~ 407 (576)
T PLN02286 330 IIYVTDVGQQ-QHFDMVFKAAKRA-GWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIER 407 (576)
T ss_pred EEEEEeCcHH-HHHHHHHHHHHHc-CCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhc
Confidence 3899999984 4665544333222 212 2 1346888999877899999999999999999983
Q ss_pred -----------------CCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHH---HH----HHHH-
Q psy1860 360 -----------------NLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCL---IL----KEKV- 414 (659)
Q Consensus 360 -----------------y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~---~~----~~l~- 414 (659)
. |.|++||++ ++. ++ ..+..|+ |+ ..+..-.+ ++ .++-
T Consensus 408 ~~~~~~~~~~~~~~a~~v-g~~Airy~~---------L~~-~~----~~~~~Fd-~d-~~l~~~g~t~pYlQYahAR~~S 470 (576)
T PLN02286 408 GKDSEWTPEELEQAAEAV-GYGAVKYAD---------LKN-NR----LTNYTFS-FD-QMLDLKGNTAVYLLYAHARICS 470 (576)
T ss_pred cCccccchhhHHHHHHHh-hhhhhhhhh---------hhc-CC----CCCCccC-HH-HHHhhcCCChHHHHHHHHHHHH
Confidence 4 789999999 655 23 6788888 54 11100000 00 0110
Q ss_pred HHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCCh
Q psy1860 415 LLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGP 494 (659)
Q Consensus 415 ~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~ 494 (659)
++.+.......+.......-.+..++.++..+..+...+.++.++++.+..+.-++++...|..||=+. +.+. +++.
T Consensus 471 IlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~--~Vl~-~~~~ 547 (576)
T PLN02286 471 IIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNC--KVNG-SEEE 547 (576)
T ss_pred HHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcC--ccCC-CCch
Confidence 111110000000000001112456777888889999999999999999999999999988899999531 2232 2221
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Q psy1860 495 ADCKVALNSLTKVLFTMVRVMAP 517 (659)
Q Consensus 495 ~~~~~~~~~l~~~l~~~~~lL~P 517 (659)
..+.........+|...+.||.-
T Consensus 548 ~aRL~L~~a~~~vL~~gL~LLGI 570 (576)
T PLN02286 548 TSRLLLCEATAIVMRKCFHLLGI 570 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC
Confidence 22333334455666666666643
No 75
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=7.1e-05 Score=83.40 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=116.3
Q ss_pred CCcc--eEeeccccchhHHHHHHH--HHhhhcCCCCCCeEEE---eceeecCCCCccccCCCCCCCCCCCCCcCCC----
Q psy1860 294 FPAD--FIAEGIDQTRGWFYTLLV--ISTALFKQAPFRNLIA---NGLVLAQDGQKMSKSKRNYPDPMEPPFKNLI---- 362 (659)
Q Consensus 294 ~p~d--~~~~G~D~~~~w~~~~ll--~~~~~~~~~p~k~v~~---hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~g---- 362 (659)
+.+| +++.|.||. +||..+.. ...++ .+.+.++. .|++++.+|.||||-.||+|+.+|+++.- +
T Consensus 332 ~~~d~~IyV~gadq~-~~~~ql~~~l~~~g~---~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~-~era~ 406 (577)
T COG0018 332 RGFDKLIYVLGADQH-GHFKQLKAVLELLGY---GPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEA-GERAP 406 (577)
T ss_pred cCCCEEEEEeCCcch-hHHHHHHHHHHHhcC---CCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHH-HHHhh
Confidence 4455 899999985 35444333 33333 33232333 36666668999999999999999999887 7
Q ss_pred ------------------chhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHH----H------
Q psy1860 363 ------------------ANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEK----V------ 414 (659)
Q Consensus 363 ------------------aD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l----~------ 414 (659)
.||+||++ ++.. + ..+..|+ |+ ..+. +.. |.. +
T Consensus 407 ~~~~~~~~~~~~iA~~vgi~Avry~~---------l~~~-~----~~~~~Fd-~d-~~ls-feg--Nt~pYvQYA~ARi~ 467 (577)
T COG0018 407 EEMEEKEEKNEEIAEVVGIDAVRYAD---------LSRS-R----DKDYVFD-WD-KALS-FEG--NTAPYVQYAHARIC 467 (577)
T ss_pred hHhhhhhhhhHHHHHHhhhhhHHHHH---------HhcC-C----CCCcEee-HH-HHHh-ccC--CCchhHHHHHHHHH
Confidence 99999999 5542 2 6778887 54 1111 100 111 0
Q ss_pred -HHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCC
Q psy1860 415 -LLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGG 493 (659)
Q Consensus 415 -~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~ 493 (659)
++.+.......+.......-....++.++.++.++..-+.++.+.+..+..+.-++++...|++||-. .++-..++
T Consensus 468 SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~---~~Vl~~~~ 544 (577)
T COG0018 468 SILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNA---CPVLGAEN 544 (577)
T ss_pred HHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhh---CCcCCCCc
Confidence 01110000000000000011123367788888899899999999999999999999998899999964 23222222
Q ss_pred h---HhHHHHHHHHHHHHHHHHHHhcc
Q psy1860 494 P---ADCKVALNSLTKVLFTMVRVMAP 517 (659)
Q Consensus 494 ~---~~~~~~~~~l~~~l~~~~~lL~P 517 (659)
. ..+.........+|++.+.||.-
T Consensus 545 ~~~~~aRL~L~~a~~~vL~ngL~LLGI 571 (577)
T COG0018 545 EELRAARLALVKATRQVLKNGLDLLGI 571 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 11222233445566666666543
No 76
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.60 E-value=3.4e-05 Score=80.00 Aligned_cols=73 Identities=25% Similarity=0.177 Sum_probs=37.3
Q ss_pred CcceEeeccccch---hHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTR---GWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~---~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+|+=.-|+|+.- .+ -..--.+-.++|..| ..-+.-.|++++.|+|||||+||+++|.|.++-+ .+++|||++
T Consensus 234 gVdfEp~GKDH~~~GGS~-d~~~~I~~~i~g~~p-P~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~-~PE~lr~l~ 309 (360)
T PF01921_consen 234 GVDFEPFGKDHASPGGSY-DTSKRIAREILGYEP-PVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYA-PPESLRYLM 309 (360)
T ss_dssp T-SEEEEEHHHHCTTSHH-HHHHHHHHHCC------EEEEE--EEES--------------HHHHHTTS--HHHHHHHH
T ss_pred CceeccCCCccCCCCCCh-hhHHHHHHHHhCCCC-CCCCCeeEEEeCCCcccccCCCCccCHHHHHHhc-CHHHHHHHH
Confidence 5778888999986 44 222223334445455 3567779999966779999999999999999999 999999999
No 77
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0017 Score=69.73 Aligned_cols=74 Identities=24% Similarity=0.146 Sum_probs=55.0
Q ss_pred CcceEeeccccch--hHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTR--GWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~--~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
-+|+=--|||++- +=+-+.-..+-.++|.+|+.. ++-.|++++.|+|||||+||||.+.|.++-+ .++.|||++
T Consensus 229 gVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~-~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~-~pE~lry~~ 304 (521)
T COG1384 229 GVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVP-FVYEWILLKGGGKMSSSKGNVISLSDWLEVA-PPEVLRYLI 304 (521)
T ss_pred CcccccCCcccccccCchHHHHHHHHHhcCCCCCCC-CceEEEEecCCcccccCCCcEEcHHHHHHhc-CHhHeeeee
Confidence 3566667999874 334444444444666444332 4457888866799999999999999999999 999999998
No 78
>PLN02563 aminoacyl-tRNA ligase
Probab=96.86 E-value=0.00091 Score=79.31 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=63.5
Q ss_pred cCchHHHHHHHhcCCEeEeeccccc--------------CCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEec
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKHS--------------YPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVP 177 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h~--------------~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P 177 (659)
+..+.++..|.++|++++.+...+. +++|+|||.+++.+.++||||+++++++++++.++... .|
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~-wp 290 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLD-WP 290 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcC-CC
Confidence 4568899999999999985433321 36799999999999999999999999999999998877 58
Q ss_pred Ccccchhhhhhhc
Q psy1860 178 EFVKEKRFGNWLR 190 (659)
Q Consensus 178 ~~~~~~~~~~~l~ 190 (659)
+..+ +..++||-
T Consensus 291 ~~v~-~~q~nwiG 302 (963)
T PLN02563 291 ESIK-EMQRNWIG 302 (963)
T ss_pred HHHH-HHHHHhcc
Confidence 8773 66678875
No 79
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=96.79 E-value=0.00096 Score=78.69 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=64.8
Q ss_pred cCchHHHHHHHhcCCEeEeeccccc---------------CCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEe
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKHS---------------YPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWV 176 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h~---------------~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~ 176 (659)
++.+.++..|.++|++++.+...+. .++|||||.+++.+.++||||+++++++++++.+++...+
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~w 209 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHW 209 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccc
Confidence 4567888999999998874332221 1689999999999999999999999999999999888778
Q ss_pred cCcccchhhhhhhcC
Q psy1860 177 PEFVKEKRFGNWLRE 191 (659)
Q Consensus 177 P~~~~~~~~~~~l~~ 191 (659)
|++.+ +...+||-.
T Consensus 210 p~~v~-~~q~~wig~ 223 (842)
T TIGR00396 210 PESVK-EMQRNWIGK 223 (842)
T ss_pred cHHHH-HHHHhcccc
Confidence 98874 677888863
No 80
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=96.57 E-value=0.0005 Score=73.03 Aligned_cols=86 Identities=26% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCcc--eEeeccccchhHHHHHHHHHhhhcCCCCC-CeE--EEeceeecCCCC-ccccCCCCCCCCCCCCC---------
Q psy1860 294 FPAD--FIAEGIDQTRGWFYTLLVISTALFKQAPF-RNL--IANGLVLAQDGQ-KMSKSKRNYPDPMEPPF--------- 358 (659)
Q Consensus 294 ~p~d--~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v--~~hG~v~~~~G~-KMSKS~GN~i~p~~~i~--------- 358 (659)
+..| +|+.|.||. .||..+....-.+ +..|. .++ +.+|+++.++|+ |||+.+||+|..+|+++
T Consensus 236 ~~~d~~iyV~~~~q~-~hf~~l~~~l~~l-g~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~~ 313 (354)
T PF00750_consen 236 YGFDKIIYVVGADQK-GHFKQLFAILEAL-GYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALEI 313 (354)
T ss_dssp SS-SEEEEEEEGGGH-HHHHHHHHHHHHT-T-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHHH
T ss_pred hccccEEEEecCchh-hHHHHHHHHHHHh-CCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHHH
Confidence 3445 899999985 4655544333322 22121 222 567999999998 99999999999999999
Q ss_pred -----------------cCCCchhhhhhcccccccccccCCCCCccccCcccccc
Q psy1860 359 -----------------KNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVH 396 (659)
Q Consensus 359 -----------------~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~ 396 (659)
.. |..|+||+. ++. ++ ..|..|+
T Consensus 314 ~~~~~~~~~~~~~~~a~~v-g~~Ai~y~~---------l~~-~~----~~~~~Fd 353 (354)
T PF00750_consen 314 MEKNPDLSEEEREEIAEQV-GVGAIRYFD---------LSQ-KR----NKDYVFD 353 (354)
T ss_dssp HHHHTTCTHCHHHHHHHHH-HHHHHHHHH---------HSS--T----TS-EEEE
T ss_pred HhcccCCChhhHHHHHHHh-hhhHHHHHH---------Hhc-cC----CCCceec
Confidence 46 889999998 655 22 6677776
No 81
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.0023 Score=73.63 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=62.7
Q ss_pred chHHHHHHHhcCCEeEeecccccC--------------CccccCCCcEEEcccCceeeechHhHHHHHHhcCCce-EecC
Q psy1860 114 DKPIIKHLKEQSRLVSAGSVKHSY--------------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTY-WVPE 178 (659)
Q Consensus 114 ~~~ii~~L~~~g~l~~~~~~~h~~--------------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~-~~P~ 178 (659)
.+.++-.|.++|++++.+.....= ..|||||.+|+.+.-.||||+++++.++|++-+.... ..|+
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE 216 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPE 216 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCch
Confidence 377899999999998843322211 4699999999999999999999999999999888766 6899
Q ss_pred cccchhhhhhhcC
Q psy1860 179 FVKEKRFGNWLRE 191 (659)
Q Consensus 179 ~~~~~~~~~~l~~ 191 (659)
..+ ..-.+||..
T Consensus 217 ~Vk-~mq~nWIg~ 228 (814)
T COG0495 217 TVK-GMQRNWIGP 228 (814)
T ss_pred hHH-HHHHcCcCC
Confidence 884 666789873
No 82
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.27 E-value=0.006 Score=55.91 Aligned_cols=49 Identities=33% Similarity=0.274 Sum_probs=35.4
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCC
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSK 347 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~ 347 (659)
.++++.|+||...+ ....++..++ +..+ ...+.+|+++..+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~h~~~~~~i~~~~~--~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLGHIELGLELLKKAG--GPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHHHHHHHHHHHHHhC--CCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 58999999998833 3444544443 2222 467778999998889999995
No 83
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.03 E-value=0.0069 Score=65.32 Aligned_cols=58 Identities=21% Similarity=0.015 Sum_probs=42.0
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~ 355 (659)
+.+|+.+.|.||..+. +.+-+..... ...| ..+++.++.+.+|.|||||.||.|+..+
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~~r~~--~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQRKLE--GEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHHHHhC--CCCc--eEeccCCccCCCCCccCCCCCCceeccC
Confidence 4789999999997655 3334443332 2344 4556778888899999999999998775
No 84
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=95.98 E-value=0.0069 Score=71.37 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=65.8
Q ss_pred ccCchHHHHHHHhcCCEeEeecccc--------------cCCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEe
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKH--------------SYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWV 176 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~ 176 (659)
.++...++..|.++|+++......+ ..++|+|||.+++.+.++||||+++++++++++.++...=+
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w 211 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDW 211 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccC
Confidence 3566889999999999988543322 12689999999999999999999999999999998775334
Q ss_pred cCcccchhhhhhhcCCCceEe
Q psy1860 177 PEFVKEKRFGNWLREARDWAI 197 (659)
Q Consensus 177 P~~~~~~~~~~~l~~l~Dw~I 197 (659)
|+..+ ....+||....-+.|
T Consensus 212 ~~~v~-~~~~~wig~~~~~~i 231 (805)
T PRK00390 212 PEKVK-TMQRNWIGRSEGAEV 231 (805)
T ss_pred cHHHH-HHHHhhccccceEEE
Confidence 77764 556778764444434
No 85
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=95.97 E-value=0.011 Score=61.30 Aligned_cols=62 Identities=29% Similarity=0.215 Sum_probs=43.6
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC-ccccCCCC-CCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ-KMSKSKRN-YPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~-KMSKS~GN-~i~p~~ 355 (659)
+-+|+.+.|.||.... +.+-+....+.....|-...+++.++...+|. |||||.+| .|...|
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEec
Confidence 4467999999998766 56666666554322233467777799888999 99999999 666554
No 86
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.74 E-value=0.014 Score=59.49 Aligned_cols=68 Identities=21% Similarity=0.051 Sum_probs=47.4
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
-+|+...|.||...+ +.+-+...... ..| -.+.|.++.+.+|+|||||.+|.++ ..+.+ .++.++-.+
T Consensus 151 ~~~l~~~G~DQ~~~i~~~rd~a~r~~~--~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d---sp~~i~~Ki 219 (269)
T cd00805 151 DVDLQLGGSDQRGNITLGRDLIRKLGY--KKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD---SPYDVYQKI 219 (269)
T ss_pred hCCeeEecHHHHHHHHHHHHHHHHhCC--CCc--EEEeeccccCCCCCcccCCCCCccc-ccCCC---CHHHHHHHH
Confidence 358999999998665 45555555432 334 4578899999999999999999986 33322 455655555
No 87
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=95.73 E-value=0.012 Score=61.62 Aligned_cols=62 Identities=26% Similarity=0.277 Sum_probs=41.6
Q ss_pred cCCcceEeeccccchhH-HHHHHHHHhhh-cC---CCCCCeEE--EeceeecCCCCccccCCCCCCCCCC
Q psy1860 293 RFPADFIAEGIDQTRGW-FYTLLVISTAL-FK---QAPFRNLI--ANGLVLAQDGQKMSKSKRNYPDPME 355 (659)
Q Consensus 293 ~~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~---~~p~k~v~--~hG~v~~~~G~KMSKS~GN~i~p~~ 355 (659)
.|.+|+...|.||...+ +.+-+...... ++ ..| ..++ .|.++.+-+|+|||||.+|.|...|
T Consensus 147 ~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 147 LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccccC
Confidence 35678999999998766 66666555431 11 124 3332 3666666789999999999886543
No 88
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=95.73 E-value=0.009 Score=64.49 Aligned_cols=70 Identities=23% Similarity=0.108 Sum_probs=47.2
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
+.+|+.+.|.||..+. +.+-+..... .+.+| .++..++.+.+|+|||||.||.|+..+- +. .++.++=++
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~r~~--~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~--~t-sp~~i~qki 257 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQRRYG--GKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE--KT-SPYEMYQKW 257 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHHHhC--CCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC--CC-CHHHHHHHH
Confidence 5799999999997644 2344444432 23333 3466777888999999999999987752 23 455555544
No 89
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.56 E-value=0.02 Score=58.35 Aligned_cols=71 Identities=17% Similarity=-0.068 Sum_probs=45.7
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
+.+|+...|.||.... +.+-+...... ...| ..+++.++.+.+|.|||||.||.+....+.+ .++.++-.+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~-~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki 223 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNG-FTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFW 223 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCC-CCCC--eEEeeccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHH
Confidence 4568999999997655 44444444321 1234 3445589999999999999999886544433 334444444
No 90
>KOG0435|consensus
Probab=95.15 E-value=0.0061 Score=66.79 Aligned_cols=75 Identities=24% Similarity=0.299 Sum_probs=59.6
Q ss_pred chHHHHHHHhcCCEeEeecccccC---------------CccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEecC
Q psy1860 114 DKPIIKHLKEQSRLVSAGSVKHSY---------------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPE 178 (659)
Q Consensus 114 ~~~ii~~L~~~g~l~~~~~~~h~~---------------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~ 178 (659)
.+-|+-.|-++|+.+..|--...- .++||||.++|-+...||||+++++.+++++.++...=.|+
T Consensus 160 TQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~ 239 (876)
T KOG0435|consen 160 TQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE 239 (876)
T ss_pred HHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Confidence 467888999999988755443333 46899999999999999999999999999999987654566
Q ss_pred cccchhhhhhhc
Q psy1860 179 FVKEKRFGNWLR 190 (659)
Q Consensus 179 ~~~~~~~~~~l~ 190 (659)
. ++.-.|||-
T Consensus 240 -v-k~mQrnWIG 249 (876)
T KOG0435|consen 240 -V-KDMQRNWIG 249 (876)
T ss_pred -H-HHHHHhhcc
Confidence 4 356667875
No 91
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=94.93 E-value=0.021 Score=59.87 Aligned_cols=60 Identities=28% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cC---CCCCCeEEEece---eecCCCCccccCCCC-CCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FK---QAPFRNLIANGL---VLAQDGQKMSKSKRN-YPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~---~~p~k~v~~hG~---v~~~~G~KMSKS~GN-~i~p~~ 355 (659)
+-+|+...|.||...+ +.+-+....+- ++ ..| ..+.|.+ +.+-+|+|||||.+| .|...|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 4578999999998765 67777666651 11 234 3344444 444456899999997 776554
No 92
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=94.68 E-value=0.035 Score=58.28 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=43.8
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC--ccccCC-CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ--KMSKSK-RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~--KMSKS~-GN~i~p~~ 355 (659)
+.+|+...|.||.... +.+-+....+. ..| ..+.|.++.+-+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~~n~--~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPKLGY--KKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHhcCC--CCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 5689999999998654 66666555432 344 45668898888887 999999 99998765
No 93
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=94.21 E-value=0.061 Score=57.43 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=40.8
Q ss_pred cCCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecC-CC-CccccCCCC-CCCCCC
Q psy1860 293 RFPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQ-DG-QKMSKSKRN-YPDPME 355 (659)
Q Consensus 293 ~~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~-~G-~KMSKS~GN-~i~p~~ 355 (659)
.+.+|+...|.||-.++ +.+-+....+.. ..| -++.|.++.+- +| .|||||.+| .|...|
T Consensus 208 ~l~adivpvG~DQ~~~~~LaRdia~~~~~~-~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 208 YLKADICQLGMDQRKVNMLAREYCDKKKIK-KKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred ccCCCEEEeCccHHHHHHHHHHHHHHhCCC-CCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 35689999999996555 666666555421 122 34467787776 45 799999987 577665
No 94
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=93.99 E-value=0.057 Score=56.64 Aligned_cols=62 Identities=27% Similarity=0.246 Sum_probs=41.3
Q ss_pred cCCcceEeeccccchhH-HHHHHHHHhhh-cCC----CCCCeEEE-eceeecCCC-CccccCCCCCCCCCC
Q psy1860 293 RFPADFIAEGIDQTRGW-FYTLLVISTAL-FKQ----APFRNLIA-NGLVLAQDG-QKMSKSKRNYPDPME 355 (659)
Q Consensus 293 ~~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~~----~p~k~v~~-hG~v~~~~G-~KMSKS~GN~i~p~~ 355 (659)
.+.+|+...|.||...+ +.+-+...... ++. .| +.++. |.++.+-+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 46789999999998766 67777766552 221 12 22221 445555566 899999999886655
No 95
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.99 E-value=0.057 Score=57.86 Aligned_cols=70 Identities=23% Similarity=0.183 Sum_probs=44.4
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cC----CCCCCeEEE--eceeecCCCCccccCCCCCCCCCCCCCcCCCchh
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FK----QAPFRNLIA--NGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANG 365 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~----~~p~k~v~~--hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~ 365 (659)
|.+|+...|.||.+-. +.+-+...... ++ ..| ..++. +..+.+-+|+|||||.+|.|...| .+|.
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~ 219 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLFA------PREE 219 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeecC------CHHH
Confidence 5678999999998654 56666555431 11 133 23332 346666689999999999986553 4455
Q ss_pred hhhhc
Q psy1860 366 LVLSS 370 (659)
Q Consensus 366 lR~~l 370 (659)
+|--+
T Consensus 220 I~kKI 224 (431)
T PRK12284 220 LKKAI 224 (431)
T ss_pred HHHHH
Confidence 55444
No 96
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.78 E-value=0.052 Score=57.67 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=40.8
Q ss_pred CCcceEeeccccchhH-HHHHHHHHh----hhcCCCCCCeEEEeceeecCCCCccccCC-CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVIST----ALFKQAPFRNLIANGLVLAQDGQKMSKSK-RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~----~~~~~~p~k~v~~hG~v~~~~G~KMSKS~-GN~i~p~~ 355 (659)
|-+++...|.||...+ +.+-+.... ++ ..| ..+.|-++.+-+|.|||||. +|.|...|
T Consensus 202 ~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf--~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDPHIRLTRDIAERLHGGYGF--IKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhhhcCC--CCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 4567899999997655 566655554 43 234 33446678777899999998 67887665
No 97
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=93.58 E-value=0.084 Score=54.14 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=41.0
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhc-CC-CCCCeEEEe--ceeecCCC--CccccCCC-CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALF-KQ-APFRNLIAN--GLVLAQDG--QKMSKSKR-NYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~-~~-~p~k~v~~h--G~v~~~~G--~KMSKS~G-N~i~p~~ 355 (659)
+.+|+...|.||...+ +.+-+.....-. +. .+-...+.| .++.+-+| .|||||.| |.|...|
T Consensus 136 ~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 4568888899997665 666666555411 00 111355566 77766666 59999998 8987765
No 98
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.55 E-value=0.075 Score=54.56 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhc-C-CCCCCeEEEec--eeecCCC-CccccCCCC-CCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALF-K-QAPFRNLIANG--LVLAQDG-QKMSKSKRN-YPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~-~-~~p~k~v~~hG--~v~~~~G-~KMSKS~GN-~i~p~~ 355 (659)
|.+++.--|.||-.-+ +.+-+....... + .-|-...+.|. ++.+-+| +|||||.+| +|...|
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 3457778899998655 677776665411 1 11113556666 8887788 899999999 776554
No 99
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=92.31 E-value=0.18 Score=53.98 Aligned_cols=58 Identities=24% Similarity=0.131 Sum_probs=36.1
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCC
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEP 356 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~ 356 (659)
-+|+.+.|.||..+- .-..+..... +..+| .+++.++...+|.|||||.||.|+..+-
T Consensus 177 ~~di~~gG~DQ~~ni~~g~dLar~~~--~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~~ 235 (377)
T TIGR00234 177 NVDLQIGGSDQWGNIRKGRDLIRRNL--PSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDEG 235 (377)
T ss_pred cCCeeEecchhHHHHHHHHHHHHHhc--CCCce--eeceeeecCCCCCCccCCCCCcccCCcc
Confidence 467999999995433 2222322222 23333 2444556666899999999998876543
No 100
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.16 E-value=0.18 Score=53.64 Aligned_cols=25 Identities=40% Similarity=0.284 Sum_probs=20.7
Q ss_pred EeceeecCCCCccccCCCCCCCCCC
Q psy1860 331 ANGLVLAQDGQKMSKSKRNYPDPME 355 (659)
Q Consensus 331 ~hG~v~~~~G~KMSKS~GN~i~p~~ 355 (659)
.|.+|.+-+|+|||||.+|.|...|
T Consensus 253 ~~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 253 EASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCcccCCCCCcCCCCCCCeeeCcC
Confidence 4678888889999999999887654
No 101
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.97 E-value=0.13 Score=54.83 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=38.7
Q ss_pred CcceEeeccccchhHH-HHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCC
Q psy1860 295 PADFIAEGIDQTRGWF-YTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNY 350 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~-~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~ 350 (659)
-.|+.++|.||=++|. -.-+....+. .+ .-.+++.++.+.+|.|||||.||.
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl~rr~g~---~~-~~~lt~PLL~~ldG~KmgKs~~~a 232 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDLIRRLGQ---KK-VVGLTTPLLTGLDGKKMGKSEGGA 232 (401)
T ss_pred ccchhcCChHHHHHHHHHHHHHHHhCC---CC-eEEEEeccccCCCCCcccccCCCc
Confidence 4679999999977763 4444444433 22 467888888999999999999993
No 102
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=91.64 E-value=0.16 Score=50.08 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=47.8
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
.+..+-|.|++..- .+..++..++. .. .....++.+++++|+|||||.|+. ...++.+ .| .+++++-|+
T Consensus 110 IThViRG~D~l~st~~q~~l~~~Lg~--~~--P~~~H~pll~~~~g~KLSKr~~~~-~i~~~r~~G~-~p~ai~~~l 180 (230)
T cd00418 110 ITHVLRGEDHLDNTPIQDWLYEALGW--EP--PRFYHFPRLLLEDGTKLSKRKLNT-TLRALRRRGY-LPEALRNYL 180 (230)
T ss_pred CCEEEECHhhhhchHHHHHHHHHcCC--CC--CeEEEeeeeeCCCCCCccCcCCCc-CHHHHHHCCC-cHHHHHHHH
Confidence 34556677776543 56666666654 23 378888999999999999999983 3333332 46 889998887
No 103
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.98 E-value=0.2 Score=52.79 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=40.5
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhc-C---CCCCCeEEE-e-ceeecCCCC--ccccCCC---CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALF-K---QAPFRNLIA-N-GLVLAQDGQ--KMSKSKR---NYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~-~---~~p~k~v~~-h-G~v~~~~G~--KMSKS~G---N~i~p~~ 355 (659)
+.+|+...|.||...+ +.+-+....... + ..| ..++. | .++.+-+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 4689999999997665 666666554321 1 244 33332 2 556666776 9999999 7887655
No 104
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.69 E-value=0.25 Score=49.15 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=48.7
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
-++..+-|.|++..= .+..++..+++ .. ..+..++.+++.+|+||||+.|+ .....+.+ .+ .+.+++-|+
T Consensus 118 ~ithViRG~D~~~~t~~q~~l~~aLg~--~~--p~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~-~p~ai~~~l 189 (239)
T cd00808 118 GITHVIRGEEHLSSTPKQILLYEALGW--EP--PKFAHLPLILNPDGKKLSKRKGD-TSISDYREEGY-LPEALLNYL 189 (239)
T ss_pred CCCEEEEChhhhhChHHHHHHHHHcCC--CC--CceEeeccccCCCCCcccCCCCC-ccHHHHHHCCC-CHHHHHHHH
Confidence 355667788877543 56666666654 23 36777888888899999999999 33333333 46 888888887
No 105
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.95 E-value=1.7 Score=50.82 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHhHhCcccEEEEeCCceeEEEecccCCHHHHHHHHHhhHHH
Q psy1860 595 NDAQCLQEIRTLESYILQELNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKP 651 (659)
Q Consensus 595 ~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~~~~v~l~~~~d~~~~~~rl~k~~~~ 651 (659)
.++...+.++.+.++|..++|+++.....+...+.+.+... +....+++.....
T Consensus 716 ~d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 769 (877)
T COG0525 716 IDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGS---EELEDRLEANEDD 769 (877)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEecc---HhHHHHHHHHHHH
Confidence 36667788899999999999998766666666655544443 3333444444333
No 106
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=89.46 E-value=0.58 Score=45.88 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=31.7
Q ss_pred eEeeccccchhHHH--HHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCC
Q psy1860 298 FIAEGIDQTRGWFY--TLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKR 348 (659)
Q Consensus 298 ~~~~G~D~~~~w~~--~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~G 348 (659)
+++.|.||.. |+. ..++..++.. ..|--..+.+|+|+.++|.||||..|
T Consensus 162 i~v~g~~~~~-~~~~~~~~~~~lg~~-~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHHG-HFKRLFAALELLGYD-EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHHH-HHHHHHHHHHHcCCC-CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 6799999853 433 3344444331 12323456669999977999999987
No 107
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=86.87 E-value=0.76 Score=52.61 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCe-EEEeceeecCC-C-CccccCC-CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRN-LIANGLVLAQD-G-QKMSKSK-RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~-v~~hG~v~~~~-G-~KMSKS~-GN~i~p~~ 355 (659)
+.+|+...|.||...+ +.+-+...++ ..| +. ++.|.++.+-+ | .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~g---~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLIG---RKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhC---CCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 4688999999997655 5555555443 222 22 34456665543 3 6999999 68987665
No 108
>PLN02486 aminoacyl-tRNA ligase
Probab=83.21 E-value=1.2 Score=47.53 Aligned_cols=54 Identities=26% Similarity=0.221 Sum_probs=34.9
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCC-CCCCCC
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRN-YPDPME 355 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN-~i~p~~ 355 (659)
+.--|.||-..+ +.+-+....+. ..| .++.|.++..-.| .|||||.+| .|...|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r~~~--~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPRLGY--YKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHHhCC--CCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 555699986544 56666555432 345 3444566665566 799999988 687665
No 109
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=76.06 E-value=2.8 Score=47.00 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=49.8
Q ss_pred CcceEeeccccc-hh------H-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCC-------CC---CCC--
Q psy1860 295 PADFIAEGIDQT-RG------W-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN-------YP---DPM-- 354 (659)
Q Consensus 295 p~d~~~~G~D~~-~~------w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN-------~i---~p~-- 354 (659)
+.|-+..|.+++ |+ - .+..++.+++. +......+|++.. +|.|||||++- +- ||.
T Consensus 288 ~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~----~~P~~~H~~~L~~-~g~kLSKR~~~~~i~~g~~~gWDDpr~~ 362 (567)
T PRK04156 288 AVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGW----EYPETIHYGRLKI-EGFVLSTSKIRKGIEEGEYSGWDDPRLP 362 (567)
T ss_pred eeeecCCCCCeEEcccccccChHHHHHHHHHcCC----CCceEEEcceecC-CCceeecccchhccccCccccccCCchH
Confidence 345555555543 22 1 45555555543 2357788888875 99999999832 20 232
Q ss_pred ---CCCC-cCCCchhhhhhcccccccccccCCCCCccccCcccccc
Q psy1860 355 ---EPPF-KNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVH 396 (659)
Q Consensus 355 ---~~i~-~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~ 396 (659)
.+.. .| .++++|.|+ +..+-. ..|..|+
T Consensus 363 Tl~~lrrrG~-~PeAi~~fl---------~~lG~s----~~~~~~~ 394 (567)
T PRK04156 363 TLRALRRRGI-LPEAIRELI---------IEVGVK----ETDATIS 394 (567)
T ss_pred HHHHHHHcCC-CHHHHHHHH---------HHhCCC----CCCcccC
Confidence 2222 47 999999999 543222 4677777
No 110
>PLN02886 aminoacyl-tRNA ligase
Probab=72.52 E-value=4.5 Score=43.21 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=18.1
Q ss_pred CCcceEeeccccchhH-HHHHHHHHh
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVIST 318 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~ 318 (659)
|-+|+...|.||..-+ +.+-+....
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA~rf 208 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIAERV 208 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHHHHH
Confidence 5678999999998755 666665443
No 111
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=71.27 E-value=3.7 Score=45.38 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=48.8
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l 370 (659)
-.+..+-|.|++..- .+..++.+++. .. ..+..+.++++.+|+||||.+| .+...++.+. | -+.+++-++
T Consensus 197 ~ithvIrG~d~~~~t~~~~~l~~aLg~--~~--p~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~-~p~a~~~~~ 268 (470)
T TIGR00464 197 KITHVIRGEDHISNTPKQILIYQALGW--KI--PVFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGY-LPEALINYL 268 (470)
T ss_pred CCCEEEECchhhcCHHHHHHHHHHcCC--CC--CeEEEEeeeecCCCccccccCC-CccHHHHHHCCC-CHHHHHHHH
Confidence 345566888877533 44455555543 22 3677778888889999999999 7777777765 4 678888777
No 112
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=71.03 E-value=4.5 Score=44.43 Aligned_cols=65 Identities=22% Similarity=0.076 Sum_probs=44.1
Q ss_pred eeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCC-CCCcCCCchhhhhhc
Q psy1860 300 AEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME-PPFKNLIANGLVLSS 370 (659)
Q Consensus 300 ~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~-~i~~y~gaD~lR~~l 370 (659)
+-|.|++-+= -+..++.+++. .| -....++++++.+|+|||||+| .++..+ ....| -..+++-++
T Consensus 211 iRG~d~~~nt~~q~~l~~~lg~---~~-P~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~-~~~al~~~~ 277 (472)
T COG0008 211 LRGEDHLDNTPRQIWLYEALGW---PP-PVYAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGW-LPPALPNLL 277 (472)
T ss_pred EechhhccCCHHHHHHHHHcCC---CC-CcEEEeeeeecCCCCeecCccC-ccccchhhhcCC-CcHHHHHHH
Confidence 4466655432 56667666654 22 4788899999988999999999 554443 23566 666776666
No 113
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=70.28 E-value=4.5 Score=41.68 Aligned_cols=65 Identities=22% Similarity=0.140 Sum_probs=42.4
Q ss_pred ceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.-.+-|.|++..- .+..++.+++. .. .....++++++.+|+||||+.|-. ...+ +.+ -+. +..++
T Consensus 194 ThVvRG~D~l~~t~~Q~~l~~aLg~--~~--P~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~-~p~-l~~~l 259 (299)
T PRK05710 194 THVVRGADLLDSTPRQIYLQQLLGL--PT--PRYLHLPLVLNADGQKLSKQNGAP-ALDA--AGP-LPV-LAAAL 259 (299)
T ss_pred CEEEeChhhhhcCHHHHHHHHHcCC--CC--CeEEEeecccCCCCCcccccCCcc-chhh--cCc-CHH-HHHHH
Confidence 3455677765443 45566666654 23 377778999999999999998754 2222 577 666 55555
No 114
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=67.60 E-value=4.9 Score=44.54 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=47.9
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhc
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSS 370 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l 370 (659)
.+-.+-|.|++..- .+..++.+++. .. ..+..+.++++.+|+||||..| .++..++.+. | -+.+++-|+
T Consensus 208 ithvIrG~d~~~~t~~q~~l~~alG~--~~--p~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~-~p~Ai~n~l 278 (476)
T PRK01406 208 ITHVIRGEDHLSNTPKQILLYEALGW--EV--PVFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGY-LPEALLNYL 278 (476)
T ss_pred CCEEEECchhhcCHHHHHHHHHHhCC--CC--CeEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCC-CHHHHHHHH
Confidence 34556788876443 44455555553 23 3666778888889999999999 7777777764 5 778888777
No 115
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=67.07 E-value=5.1 Score=31.12 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.4
Q ss_pred CHHHHHHHHHhhHHHHHHHHhh
Q psy1860 637 DHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 637 d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
|+++|.+||.|++.++++.+.+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIER 22 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999875
No 116
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=66.60 E-value=5.6 Score=40.50 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=34.2
Q ss_pred ceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCC
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN 349 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN 349 (659)
.-.+-|.|++..- .+..++.+++. ..| ....++++++.+|+|+||+.|-
T Consensus 187 ThViRG~D~l~~t~~q~~l~~aLg~--~~P--~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 187 THVVRGADLLDSTPRQIYLQRLLGL--PPP--RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred CEEEeCHhhhhccHHHHHHHHHhCC--CCC--eEEechhhhCCCCCeeeccCCc
Confidence 3455566665443 55666666654 344 6777899999999999999865
No 117
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=62.46 E-value=8.3 Score=41.94 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=46.2
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
-.+-|.|++.+- .+-.++.+++. ..| .....++++++.+|+||||+.|.. ...++.+ .| -+++++=|+
T Consensus 193 hViRG~d~l~~tp~Qi~Ly~aLg~--~~p-p~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~~G~-~PeAi~n~l 262 (433)
T PRK12410 193 LIIRGEDHVSNTPKQILIREALGY--NKE-ITYAHLPIILNEEGKKMSKRDNAS-SVKWLLEQGF-LPSAIANYL 262 (433)
T ss_pred EEEechhhhhCcHHHHHHHHHcCC--CCC-CeEEEeeeeeCCCCCeeecccChh-hHHHHHHCCC-CHHHHHHHH
Confidence 445577766554 45566666654 233 467778999999999999999853 2333332 57 889998887
No 118
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=61.90 E-value=11 Score=41.80 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=47.8
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
..+-.+-|.|++..= -+..++.+++. .. .....+++|++.+|+||||..|.. ...++.+ .| -+++++=|+
T Consensus 196 ~ithVIRG~d~~~~t~~q~~l~~aLG~--~~--p~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~-~Peai~n~l 267 (513)
T PRK14895 196 GITHIIRGDDHLTNAARQLAIYQAFGY--AV--PSMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGY-LPESLCNYL 267 (513)
T ss_pred CCCEEEECchHhhhHHHHHHHHHHcCC--CC--CeEEEEEeEEcCCCCccccccCch-hHHHHHHCCC-CHHHHHHHH
Confidence 345556788876433 45555555543 23 488888999988999999999874 2233322 57 888998877
No 119
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=59.37 E-value=14 Score=38.50 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=34.5
Q ss_pred cceEeeccccchh-HHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCC
Q psy1860 296 ADFIAEGIDQTRG-WFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN 349 (659)
Q Consensus 296 ~d~~~~G~D~~~~-w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN 349 (659)
..-.+=|.|++.. ..+..|+.++++ .| .....|.++++.+|+|+||+.+-
T Consensus 200 ITHViRG~D~l~~t~~Q~~L~~~Lg~---~~-P~~~H~pl~l~~~g~kLSKR~~~ 250 (314)
T PF00749_consen 200 ITHVIRGEDLLSSTPRQILLYEALGW---PP-PPYAHLPLILNEDGKKLSKRKGA 250 (314)
T ss_dssp -SEEEEEGGGTTCHHHHHHHHHHCTS---SS--EEEEEEEEEETTSSBSSTTCSH
T ss_pred cCeEEEccccccccHHHHHHHHHhCC---CC-cceEeeeeeecCCCcEechhhcc
Confidence 3355668887754 466667666655 22 35667788999999999999854
No 120
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=54.87 E-value=1.7e+02 Score=26.75 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCCh--HhHHHHHHHHHHHHHHHHHH
Q psy1860 437 IMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGP--ADCKVALNSLTKVLFTMVRV 514 (659)
Q Consensus 437 ~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~--~~~~~~~~~l~~~l~~~~~l 514 (659)
..++.+...+..+.+.+..++.+.+++.++..+.++...+.+||=+ . +.-.++.. ..+...+..+..++...+.+
T Consensus 71 ~~E~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~-v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~l 147 (156)
T cd07956 71 PDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNA-C--PVLGAEEELRNARLALVAAARQVLANGLDL 147 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhc-C--cccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677778888787888888999999999999987777776632 2 22222211 11223334445555555555
Q ss_pred h
Q psy1860 515 M 515 (659)
Q Consensus 515 L 515 (659)
|
T Consensus 148 l 148 (156)
T cd07956 148 L 148 (156)
T ss_pred c
Confidence 5
No 121
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=54.60 E-value=97 Score=26.66 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChH---hHHHHHHHHHHHHHHHH
Q psy1860 436 NIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPA---DCKVALNSLTKVLFTMV 512 (659)
Q Consensus 436 ~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~---~~~~~~~~l~~~l~~~~ 512 (659)
+..++-+...+..+...+..+++.++++.++..++++...++++|=+ .+...+++.. .+-..+.....++...+
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~---~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l 108 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDN---VRILDEDEEIRKNNRLALLKAVRQVLKNGL 108 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH---S-STTSTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh---ccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888999999999999999999998888888843 2333333321 12233344455555555
Q ss_pred HHhc
Q psy1860 513 RVMA 516 (659)
Q Consensus 513 ~lL~ 516 (659)
.+|.
T Consensus 109 ~llg 112 (119)
T PF05746_consen 109 DLLG 112 (119)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 5553
No 122
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=53.97 E-value=8.4 Score=42.10 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=47.0
Q ss_pred ceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
.-.+-|.|++.+- .+-.++.+++. ..| ....++++++.+|+|+||..|.+ +..++.+ .| -+++++=|+
T Consensus 198 THViRG~d~l~~t~~q~~l~~alg~--~~P--~f~H~pli~~~~g~KLSKR~g~~-sv~~~r~~G~-~Peai~n~l 267 (445)
T PRK12558 198 THIIRGEDHVTNTAVQIQIFEALGA--KPP--VFAHLSLLTGADGKGLSKRLGGL-SIRSLREDGI-EPMAIASLL 267 (445)
T ss_pred CEEEechhhhhCCHHHHHHHHHhCC--CCC--eEEEcccccCCCcccccccCCCc-CHHHHHHCCC-CHHHHHHHH
Confidence 3455577766543 45566666653 233 88889999999999999998753 3333333 57 899998887
No 123
>KOG2623|consensus
Probab=53.48 E-value=14 Score=38.86 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCcceEeeccccchhH-----HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-----FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPM 354 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-----~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~ 354 (659)
|...+.++|.||..+- +-+-++... ..+| =++-.+++...|.|+-||-||.|+.+
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~~~----~~vf--GlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMPIQ----AFVF--GLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhcccc----ccee--eeeeeeEecCcchhhccCCCceEEec
Confidence 4577999999997543 333333211 1232 34556778889999999999999866
No 124
>PLN02627 glutamyl-tRNA synthetase
Probab=52.92 E-value=11 Score=41.99 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=47.2
Q ss_pred ceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
.-.+-|.|++.+- -+-.++.+++. ..| ....++++++.+|+||||..|.+ ...++.+ .| -+++++=|+
T Consensus 251 THViRG~D~l~nTpkQi~ly~aLg~--~~P--~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~~G~-~PeAi~nyl 320 (535)
T PLN02627 251 THVIRAEEHLPNTLRQALIYKALGF--PMP--RFAHVSLILAPDRSKLSKRHGAT-SVGQFREMGY-LPDAMVNYL 320 (535)
T ss_pred cEEEechhhhcChHHHHHHHHHcCC--CCC--eEEEccceeCCCCCccccccCCc-cHHHHHHCCC-CHHHHHHHH
Confidence 3455577766544 45566666654 334 78889999999999999998653 4433333 57 889998777
No 125
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=42.45 E-value=77 Score=31.57 Aligned_cols=46 Identities=17% Similarity=0.013 Sum_probs=28.1
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCC
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKR 348 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~G 348 (659)
-.+-|.|++-.- .+..++.++++ ..| ..+..+++ +.+|+|+||+.+
T Consensus 124 hVvRG~D~l~~t~~Q~~l~~aLg~--~~P--~~~~~~hl-n~~g~kLSKR~~ 170 (238)
T cd00807 124 HSLCTLEFEDRRPSYYWLCDALRL--YRP--HQWEFSRL-NLTYTVMSKRKL 170 (238)
T ss_pred eEEechhhhcCCHHHHHHHHHcCC--CCC--ceeEEEEE-CCCCCCccCcCc
Confidence 345566665433 56666666655 344 33333444 679999999986
No 126
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=38.83 E-value=65 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=28.6
Q ss_pred EeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCC
Q psy1860 299 IAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKR 348 (659)
Q Consensus 299 ~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~G 348 (659)
.+-|.|.+..= .+..++.+++. ..| ....++.+++ +|+||||+.+
T Consensus 127 ViRg~d~~~~t~~q~~l~~~Lg~--~~P--~~~H~pll~~-~~~kLSKR~~ 172 (240)
T cd09287 127 VLRGKDHIDNTEKQRYIYEYFGW--EYP--ETIHWGRLKI-EGGKLSTSKI 172 (240)
T ss_pred EEechhhhhCCHHHHHHHHHcCC--CCC--cEEeeeeecC-CCCeeccccc
Confidence 34455554332 45556666554 233 5667888887 7899999985
No 127
>KOG2144|consensus
Probab=34.23 E-value=27 Score=35.32 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=35.4
Q ss_pred cCCcceEeeccccchh-HHHHHHHHHhhhcCCCCCCeEEEeceeecCC-CCccccCCCC
Q psy1860 293 RFPADFIAEGIDQTRG-WFYTLLVISTALFKQAPFRNLIANGLVLAQD-GQKMSKSKRN 349 (659)
Q Consensus 293 ~~p~d~~~~G~D~~~~-w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~-G~KMSKS~GN 349 (659)
+.-+|....|.||-.- -+..-.+-.++. +. +-.+.|.|+-+-. |.|||+|--|
T Consensus 175 ~L~vD~qfgGvDQRKIf~~A~eylp~l~y--kK--rihLmnpMvPGL~q~~KMSsSd~~ 229 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFVLAEEYLPDLGY--KK--RIHLMNPMVPGLAQGEKMSSSDPL 229 (360)
T ss_pred HHhhhHHhcCccHHHHHHHHHHhhhhhCc--cc--ceeecCCCCccccccCccccCCcc
Confidence 4568999999999542 245555555544 22 4567777776555 9999999543
No 128
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=29.02 E-value=33 Score=38.64 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred hHHHHHHHhcCCEeEeecccccCCccccCC-CcEEEcccCceeeechHhHHHHHHhc--CCceEecCcccchhhhhhhc
Q psy1860 115 KPIIKHLKEQSRLVSAGSVKHSYPFCWRSD-TPLIYKAVPSWFIRVQHMNQDLLKCN--SDTYWVPEFVKEKRFGNWLR 190 (659)
Q Consensus 115 ~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g-~~v~~~~~~qwFi~~~~~k~~~~~~~--~~~~~~P~~~~~~~~~~~l~ 190 (659)
.+||+.|.+.|+- ..--..-||+||=. ..++ .-++||-++...-+.+.+.. +++.++.-++....+..||+
T Consensus 159 ~kLIe~L~~iGY~---~~nL~gAPYDWRls~~~le--~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 159 AVLIANLARIGYE---EKNMYMAAYDWRLSFQNTE--VRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred HHHHHHHHHcCCC---CCceeecccccccCccchh--hhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHH
Confidence 6899999999974 33344579999943 2232 34899999888777777665 46778887775333444444
No 129
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.17 E-value=86 Score=37.60 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=33.6
Q ss_pred cCch-HHHHHHHhcCCEeEeecccccCCccccCCCc-----EEE--cccCceeeech
Q psy1860 112 DADK-PIIKHLKEQSRLVSAGSVKHSYPFCWRSDTP-----LIY--KAVPSWFIRVQ 160 (659)
Q Consensus 112 ~a~~-~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~-----v~~--~~~~qwFi~~~ 160 (659)
++.. .++..|.++|++++-... .|.|+||+++ ++| +.++.-|++..
T Consensus 165 e~~~~~~f~~~~~kGllyrg~Kp---v~wsp~c~TaLAeaEvey~d~~dpSIyV~F~ 218 (933)
T COG0060 165 EESVWWAFKELYEKGLLYRGYKP---VPWSPRCETALAEAEVEYGDVKDPSIYVKFP 218 (933)
T ss_pred HHHHHHHHHHHHHCCCeecCCee---eeecCCCCcchhhhhhcccccCCceEEEEEE
Confidence 4444 688999999999874332 5789999875 566 66677777764
No 130
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=25.81 E-value=2.6e+02 Score=25.04 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeCCce----------eEEEec
Q psy1860 564 RMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQK----------YGVSLR 633 (659)
Q Consensus 564 ~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~~----------~~v~l~ 633 (659)
+.++.+.++.++|....++-..|-. .+...+.-+.+.+++...++-..+.....-.. -+..+.
T Consensus 37 Y~~DT~~Vi~tlr~~i~lpkd~p~~-------~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~TALNsLAGHY~sy~ 109 (135)
T TIGR03044 37 YVEDTLAVIQTLREAIDLPDDDPNK-------SEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLAGHYKSYA 109 (135)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccH-------HHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHHHHHHHHHHhccCC
Confidence 4455566677777766654443321 11122233445566766666544433211000 011222
Q ss_pred ccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 634 AEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 634 ~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
.-|=-++..+|+.+|++++|+++.+
T Consensus 110 ~rPlPeklk~Rl~~El~~AE~al~R 134 (135)
T TIGR03044 110 NRPLPEKLKERLEKELKKAEKALLR 134 (135)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 2334468889999999999999875
No 131
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=23.49 E-value=32 Score=32.06 Aligned_cols=11 Identities=0% Similarity=-0.266 Sum_probs=5.1
Q ss_pred hhhHHHHHHHH
Q psy1860 437 IMDAWIISFSE 447 (659)
Q Consensus 437 ~~d~~il~~l~ 447 (659)
..++++..|+-
T Consensus 67 ~~k~~~AkRlL 77 (163)
T PF04918_consen 67 ETKRYAAKRLL 77 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555544443
No 132
>KOG3361|consensus
Probab=22.75 E-value=43 Score=29.56 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.1
Q ss_pred CCcCCCCCCceeecCCCCCh
Q psy1860 51 TYVTEESGTGVVHQAPYFGE 70 (659)
Q Consensus 51 ~~V~~~~GTG~V~~~Pah~~ 70 (659)
+--+++.|||+| ++||.|-
T Consensus 47 dK~dpnVGtGlV-GAPACGD 65 (157)
T KOG3361|consen 47 DKNDPNVGTGLV-GAPACGD 65 (157)
T ss_pred CCCCCCcccccc-cCccccc
Confidence 556789999997 6798873
No 133
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=22.12 E-value=1.4e+02 Score=34.05 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCC-C---------CCCC-CC-----CcCCCchhhhhhc
Q psy1860 310 FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNY-P---------DPME-PP-----FKNLIANGLVLSS 370 (659)
Q Consensus 310 ~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~-i---------~p~~-~i-----~~y~gaD~lR~~l 370 (659)
.+..++.++++ ..| ...-.+. ++.+|.||||+++.- | ||.- -+ ..| .++++|-|+
T Consensus 261 ~q~~L~~aLg~--~~P--~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~-~peai~~f~ 331 (601)
T PTZ00402 261 QYYWFCDALGI--RKP--IVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGL-KMEALRQFV 331 (601)
T ss_pred HHHHHHHHhCC--CCc--eEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCC-CHHHHHHHH
Confidence 45555555554 233 5555564 677999999998852 1 1221 01 357 889998888
No 134
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=21.49 E-value=2.9e+02 Score=20.89 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=19.8
Q ss_pred HHHHHH-hcchhhHHHHHHHHHHHHHH
Q psy1860 453 VRKEMA-AYRLYTVVPRLVLFIDNLTN 478 (659)
Q Consensus 453 ~~~~~e-~~~~~~a~~~l~~f~~~~~~ 478 (659)
+.++|+ +++...|+..+++++.....
T Consensus 2 F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 2 FIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 456775 89999999999999866444
No 135
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=21.23 E-value=38 Score=29.77 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=12.0
Q ss_pred ccCCccccCCCcEE
Q psy1860 135 HSYPFCWRSDTPLI 148 (659)
Q Consensus 135 h~~p~~~r~g~~v~ 148 (659)
+.|++|.+||.||-
T Consensus 78 gtYG~Ce~cG~~Ip 91 (120)
T COG1734 78 GTYGICEECGEPIP 91 (120)
T ss_pred CCccchhccCCcCC
Confidence 46999999999874
No 136
>PLN00064 photosystem II protein Psb27; Provisional
Probab=20.78 E-value=3.2e+02 Score=25.24 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEEEEeCCce----------eEEEec
Q psy1860 564 RMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQK----------YGVSLR 633 (659)
Q Consensus 564 ~~~~~i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~~~~~~~~----------~~v~l~ 633 (659)
+.++.+.++.++|....++...|-.. +...+.-+...+++...++-..+.....-.. -+..+.
T Consensus 66 Y~~DT~aVi~~lr~tI~L~~ddp~~a-------~a~aeaR~~iNdyvSrYRr~~~v~Gl~SFttMyTALNaLAGHY~Sfg 138 (166)
T PLN00064 66 YVKETKDVIGKVRSTINMDKTDPNVA-------DAVAELRETSNSWVAKYRREKALLGRPSFRDMYSALNAVSGHYISFG 138 (166)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCccHH-------HHHHHHHHHHHHHHHHhcCCCcccCcccHHHHHHHHHHHHHHhhccC
Confidence 34455666667776666654444211 1112222334455666666544432211100 012221
Q ss_pred -ccCCHHHHHHHHHhhHHHHHHHHhh
Q psy1860 634 -AEPDHKTLGARLKTAFKPITQAIKV 658 (659)
Q Consensus 634 -~~~d~~~~~~rl~k~~~~~~~~~~~ 658 (659)
.-+=-++..+|+.+|++++++++.+
T Consensus 139 pnrPlPeKlK~RL~qE~~~AEkal~R 164 (166)
T PLN00064 139 PTAPIPAKRKARILEEMDTAEKALLR 164 (166)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 2233468889999999999999875
No 137
>KOG2916|consensus
Probab=20.64 E-value=4e+02 Score=26.78 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=27.9
Q ss_pred HHHHHHHccccccCCCChHhHHHH---HHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 477 TNWYVRMNRRRLKGEGGPADCKVA---LNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 477 ~~~Yle~~K~~l~~~~~~~~~~~~---~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
-.-|++++|.|...++ ...|... ..+.+.+++..+.-+. ..-|++|++++-
T Consensus 79 ekGYIDLSkrrVs~ed-~~kC~Er~~ksK~v~sIlrhvAe~~g----~~LeeLY~~igW 132 (304)
T KOG2916|consen 79 EKGYIDLSKRRVSPED-KEKCEERFAKSKLVYSILRHVAEKLG----YELEELYQRIGW 132 (304)
T ss_pred CCCceechhccCCHHH-HHHHHHHHHHhHHHHHHHHHHHHHhC----CcHHHHHHHhCC
Confidence 4568999988875432 2223221 2234445554444332 226789998863
No 138
>KOG2369|consensus
Probab=20.42 E-value=67 Score=35.05 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=52.7
Q ss_pred hHHHHHHHhcCCEeEeecccccCCccccCC-CcEEEcccCceeeechHhHHHHHHhcC--CceEecCcccchhhhhhhcC
Q psy1860 115 KPIIKHLKEQSRLVSAGSVKHSYPFCWRSD-TPLIYKAVPSWFIRVQHMNQDLLKCNS--DTYWVPEFVKEKRFGNWLRE 191 (659)
Q Consensus 115 ~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g-~~v~~~~~~qwFi~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~~l~~ 191 (659)
..+|+.|...|. ..++--+.+|++||=. ++.+. .+|+|.++.+.=+.+.+..+ ++.+++-++....+..||++
T Consensus 127 ~~~i~~lv~~GY--e~~~~l~ga~YDwRls~~~~e~--rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w 202 (473)
T KOG2369|consen 127 HELIENLVGIGY--ERGKTLFGAPYDWRLSYHNSEE--RDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKW 202 (473)
T ss_pred HHHHHHHHhhCc--ccCceeeccccchhhccCChhH--HHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhc
Confidence 367777777775 3345566799999953 33332 37999888877777777654 68889988865566777776
Q ss_pred CCc
Q psy1860 192 ARD 194 (659)
Q Consensus 192 l~D 194 (659)
.++
T Consensus 203 ~~~ 205 (473)
T KOG2369|consen 203 VEA 205 (473)
T ss_pred ccc
Confidence 555
Done!