Query psy1860
Match_columns 659
No_of_seqs 368 out of 2476
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:09:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 6E-115 2E-119 1005.0 41.3 569 24-658 236-818 (862)
2 1ile_A Ilers, isoleucyl-tRNA s 100.0 1E-108 4E-113 959.2 29.8 549 2-581 262-821 (821)
3 1ffy_A Isoleucyl-tRNA syntheta 100.0 8E-109 3E-113 962.1 24.6 572 2-623 265-862 (917)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 1.7E-92 5.8E-97 833.4 24.7 525 3-586 268-858 (967)
5 1wkb_A Leucyl-tRNA synthetase; 100.0 1.2E-81 4E-86 733.8 23.6 476 3-531 268-810 (810)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 5.9E-79 2E-83 707.9 23.9 452 18-586 299-838 (878)
7 4arc_A Leucine--tRNA ligase; l 100.0 7.1E-77 2.4E-81 684.1 26.7 417 20-551 319-812 (880)
8 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.2E-58 3.9E-63 516.7 14.9 341 112-531 124-497 (536)
9 3kfl_A Methionyl-tRNA syntheta 100.0 2.5E-58 8.6E-63 515.2 16.7 343 111-532 124-515 (564)
10 1rqg_A Methionyl-tRNA syntheta 100.0 5.4E-58 1.8E-62 524.2 18.0 348 111-532 101-521 (722)
11 3u1f_A Methionyl-tRNA syntheta 100.0 5.5E-57 1.9E-61 505.6 15.9 353 111-531 107-498 (542)
12 2x1l_A Methionyl-tRNA syntheta 100.0 5.7E-56 2E-60 494.7 17.2 345 110-532 109-491 (524)
13 2d5b_A Methionyl-tRNA syntheta 100.0 2.7E-56 9.1E-61 495.2 8.3 385 63-532 47-469 (500)
14 3h99_A Methionyl-tRNA syntheta 100.0 1.8E-55 6.2E-60 493.5 9.9 342 112-531 117-520 (560)
15 2csx_A Methionyl-tRNA syntheta 100.0 1.4E-53 4.7E-58 472.5 10.7 335 111-532 103-468 (497)
16 1wny_A Isoleucyl-tRNA syntheta 99.9 2.4E-27 8.3E-32 225.4 7.6 124 2-136 63-186 (186)
17 1wka_A Valyl-tRNA synthetase; 99.9 3.2E-24 1.1E-28 195.3 8.6 99 23-133 44-146 (147)
18 3c8z_A Cysteinyl-tRNA syntheta 99.9 5.2E-24 1.8E-28 228.8 8.2 144 295-478 244-390 (414)
19 3o0a_A Leucyl-tRNA synthetase 99.9 3.4E-24 1.2E-28 207.8 3.5 120 3-133 85-217 (219)
20 2wfg_A Cytosolic leucyl-tRNA s 99.9 9.7E-24 3.3E-28 210.4 5.7 122 13-138 90-257 (261)
21 2ajg_A Leucyl-tRNA synthetase; 99.9 7.4E-23 2.5E-27 196.2 4.2 106 14-129 75-194 (196)
22 2wfd_A Leucyl-tRNA synthetase, 99.8 8.8E-22 3E-26 195.7 7.5 113 13-131 87-251 (252)
23 1li5_A Cysrs, cysteinyl-tRNA s 99.8 3.6E-21 1.2E-25 208.8 9.8 150 295-482 220-371 (461)
24 3pz6_A Leurs, leucyl-tRNA synt 99.8 7.2E-20 2.5E-24 181.1 9.7 127 2-134 121-308 (311)
25 3sp1_A Cysteinyl-tRNA syntheta 99.8 9.4E-20 3.2E-24 196.0 6.9 158 291-475 247-414 (501)
26 3tqo_A Cysteinyl-tRNA syntheta 99.7 1.1E-18 3.7E-23 187.1 8.4 149 295-481 223-372 (462)
27 3fnr_A Arginyl-tRNA synthetase 99.6 1.7E-15 6E-20 163.2 13.3 198 298-520 239-451 (464)
28 1iq0_A Arginyl-tRNA synthetase 99.1 4.1E-11 1.4E-15 134.1 6.1 165 328-517 381-586 (592)
29 2zue_A Arginyl-tRNA synthetase 99.0 1.1E-09 3.7E-14 123.1 13.9 198 298-517 380-623 (629)
30 1irx_A Lysyl-tRNA synthetase; 99.0 7.3E-11 2.5E-15 130.4 2.5 99 294-413 229-333 (523)
31 1f7u_A Arginyl-tRNA synthetase 97.5 0.00017 5.8E-09 80.3 8.2 187 298-516 368-600 (607)
32 2cyb_A Tyrosyl-tRNA synthetase 97.3 0.00015 5E-09 74.7 5.3 68 293-370 168-236 (323)
33 4arc_A Leucine--tRNA ligase; l 97.3 7.4E-05 2.5E-09 86.5 2.3 78 112-190 154-245 (880)
34 2yxn_A Tyrosyl-tRNA synthetase 96.6 0.0015 5.2E-08 66.9 4.8 69 295-370 191-260 (322)
35 2v0c_A Aminoacyl-tRNA syntheta 96.6 0.0017 5.7E-08 75.7 5.6 77 112-190 134-225 (878)
36 3tzl_A Tryptophanyl-tRNA synth 96.4 0.0028 9.5E-08 64.8 5.1 70 294-370 138-214 (322)
37 2g36_A Tryptophanyl-tRNA synth 96.3 0.0033 1.1E-07 64.8 5.6 70 294-370 152-227 (340)
38 2ts1_A Tyrosyl-tRNA synthetase 96.3 0.0033 1.1E-07 66.4 5.3 69 295-370 185-255 (419)
39 1n3l_A Tyrosyl-tRNA synthetase 96.3 0.0031 1.1E-07 65.9 4.9 67 294-370 177-245 (372)
40 1jil_A Tyrrs, tyrosyl-tRNA syn 96.2 0.0038 1.3E-07 66.1 5.4 69 295-370 186-256 (420)
41 2pid_A Tyrosyl-tRNA synthetase 96.2 0.003 1E-07 65.5 4.3 69 295-370 210-279 (356)
42 2jan_A Tyrosyl-tRNA synthetase 96.1 0.0046 1.6E-07 65.5 5.5 69 295-370 187-257 (432)
43 1y42_X Tyrosyl-tRNA synthetase 96.0 0.0051 1.7E-07 64.5 5.1 73 295-370 232-318 (392)
44 2dlc_X Tyrosyl-tRNA synthetase 96.0 0.0046 1.6E-07 65.2 4.6 67 294-370 181-250 (394)
45 1h3f_A Tyrosyl-tRNA synthetase 95.9 0.0074 2.5E-07 64.1 5.9 57 295-355 187-245 (432)
46 1yi8_B Tryptophanyl-tRNA synth 95.9 0.0066 2.2E-07 62.8 5.3 70 294-370 161-237 (351)
47 2cfo_A Glutamyl-tRNA synthetas 95.7 0.0052 1.8E-07 66.5 3.5 69 296-370 204-274 (492)
48 2el7_A Tryptophanyl-tRNA synth 95.6 0.0099 3.4E-07 61.1 5.3 70 294-370 140-217 (337)
49 3vgj_A Tyrosyl-tRNA synthetase 95.2 0.023 7.9E-07 59.1 6.3 58 294-355 199-261 (373)
50 2yy5_A Tryptophanyl-tRNA synth 95.1 0.017 5.7E-07 59.7 5.1 61 294-355 146-218 (348)
51 2ip1_A Tryptophanyl-tRNA synth 95.1 0.016 5.4E-07 61.5 5.0 58 294-355 248-309 (432)
52 2zp1_A Tyrosyl-tRNA synthetase 95.1 0.015 5.1E-07 59.3 4.6 55 294-355 162-217 (314)
53 3aii_A Glutamyl-tRNA synthetas 95.0 0.0041 1.4E-07 67.5 0.2 43 326-370 314-372 (553)
54 1i6k_A TRPRS, tryptophanyl-tRN 95.0 0.021 7E-07 58.5 5.1 61 294-355 136-208 (328)
55 2cya_A Tyrosyl-tRNA synthetase 94.8 0.022 7.4E-07 59.3 4.7 67 294-370 176-261 (364)
56 3i05_A Tryptophanyl-tRNA synth 94.5 0.026 8.8E-07 59.1 4.5 56 296-355 225-283 (395)
57 3hzr_A Tryptophanyl-tRNA synth 94.5 0.044 1.5E-06 57.1 6.2 56 296-355 225-283 (386)
58 3tze_A Tryptophanyl-tRNA synth 94.4 0.041 1.4E-06 57.7 5.7 58 294-355 242-303 (406)
59 3jxe_A Tryptophanyl-tRNA synth 94.3 0.029 1E-06 58.6 4.5 56 296-355 208-267 (392)
60 2j5b_A Tyrosyl-tRNA synthetase 94.3 0.039 1.3E-06 56.9 5.2 57 295-355 186-246 (348)
61 1r6u_A Tryptophanyl-tRNA synth 93.7 0.043 1.5E-06 58.1 4.4 59 294-356 255-317 (437)
62 1r6t_A Tryptophanyl-tRNA synth 93.6 0.043 1.5E-06 59.0 4.2 59 294-356 302-364 (477)
63 2o5r_A Glutamyl-tRNA synthetas 93.6 0.034 1.2E-06 59.9 3.4 69 296-370 219-289 (481)
64 3hv0_A Tryptophanyl-tRNA synth 93.4 0.071 2.4E-06 55.8 5.4 55 297-355 222-280 (393)
65 3p0j_A Tyrosyl-tRNA synthetase 92.7 0.099 3.4E-06 58.8 5.4 58 294-355 182-244 (690)
66 1j09_A Glutamyl-tRNA synthetas 92.6 0.062 2.1E-06 57.7 3.5 68 297-370 201-270 (468)
67 1nzj_A Hypothetical protein YA 92.5 0.099 3.4E-06 52.6 4.7 48 299-350 188-236 (298)
68 3afh_A Glutamyl-tRNA synthetas 92.1 0.085 2.9E-06 56.8 3.9 67 298-370 214-282 (488)
69 2cyc_A Tyrosyl-tRNA synthetase 91.8 0.091 3.1E-06 54.7 3.6 69 294-370 179-274 (375)
70 3foc_A Tryptophanyl-tRNA synth 91.5 0.085 2.9E-06 55.9 3.0 53 298-354 290-346 (451)
71 1qtq_A GLNRS, protein (glutami 91.4 0.045 1.5E-06 59.4 0.7 70 296-370 217-310 (553)
72 3prh_A Tryptophanyl-tRNA synth 91.3 0.19 6.4E-06 52.3 5.3 62 294-355 170-242 (388)
73 3sz3_A Tryptophanyl-tRNA synth 91.2 0.082 2.8E-06 54.2 2.4 62 294-355 142-217 (341)
74 3n9i_A Tryptophanyl-tRNA synth 91.1 0.21 7E-06 51.3 5.3 61 294-355 151-223 (346)
75 2ja2_A Glutamyl-tRNA synthetas 90.5 0.12 4E-06 55.8 3.0 70 297-370 210-284 (498)
76 3al0_C Glutamyl-tRNA(Gln) amid 90.4 0.063 2.1E-06 59.3 0.7 65 300-370 320-386 (592)
77 3a04_A Tryptophanyl-tRNA synth 88.0 0.66 2.3E-05 48.1 6.3 62 294-355 207-270 (372)
78 2hz7_A Glutaminyl-tRNA synthet 86.8 0.21 7.2E-06 56.8 1.9 41 328-370 294-350 (851)
79 4dac_A Computationally designe 83.1 1.2 4.2E-05 25.7 2.9 22 638-659 6-27 (28)
80 4g6z_A Glutamate-tRNA ligase; 71.8 2.5 8.7E-05 45.2 3.9 67 298-370 223-291 (490)
81 4gri_A Glutamate--tRNA ligase; 51.0 18 0.00061 39.1 5.9 67 298-370 232-300 (512)
82 4hhu_A OR280; engineered prote 23.9 3E+02 0.01 22.6 9.5 88 567-656 57-150 (170)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5.6e-115 Score=1004.99 Aligned_cols=569 Identities=23% Similarity=0.366 Sum_probs=499.2
Q ss_pred CCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCC-
Q psy1860 24 STLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPV- 102 (659)
Q Consensus 24 ~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~- 102 (659)
++|+|++|.+|+. ++.+||++++||++++|||+||+|||||++||++|++||| ++++++|++|++++++
T Consensus 236 ~~l~G~~~~~P~~-----~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~id~~G~~~~~~~ 305 (862)
T 1gax_A 236 RHLLGKRARIPLT-----EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL-----KPVSVINLEGRMEGERV 305 (862)
T ss_dssp CSCTTCCCBCTTC-----CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTC-----CCCCSBCTTSBBCSSSS
T ss_pred HHHcCCEEECCCC-----CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCC-----CccceeCCCCccccccC
Confidence 5799999999985 5689999999999999999999999999999999999999 8999999999999998
Q ss_pred -ccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHHHHHHhc--CCceEecCc
Q psy1860 103 -SHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCN--SDTYWVPEF 179 (659)
Q Consensus 103 -~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~--~~~~~~P~~ 179 (659)
|+|.|+++++||++|+++|++.|++.+.++++|+||||||||+||++++++||||+++++++++++++ ++++|+|++
T Consensus 306 ~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~ 385 (862)
T 1gax_A 306 PEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPER 385 (862)
T ss_dssp CTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSH
T ss_pred CcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 479999999
Q ss_pred ccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCc
Q psy1860 180 VKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPL 259 (659)
Q Consensus 180 ~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~ 259 (659)
. ++++.+||++++||||||||+||||||+|+|++|+. +|++..+++.. +...|| .||...+
T Consensus 386 ~-~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~-i~v~~~~~l~~---------------~~~~~~--~~g~~~~ 446 (862)
T 1gax_A 386 W-KKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQA-VNVPRPERYLE---------------DPTSCE--ACGSPRL 446 (862)
T ss_dssp H-HHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCC-EECCCGGGTTC---------------CCCSCT--TTCCSCE
T ss_pred H-HHHHHHHHhcccceeEecccCCCcccCceecCCCCE-EEEeccccccc---------------cchhhh--hcCchhe
Confidence 8 589999999999999999999999999999988765 55665443210 001232 3466689
Q ss_pred cccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCC
Q psy1860 260 RRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQD 339 (659)
Q Consensus 260 ~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~ 339 (659)
+|++||||||||||++|+++++||. ++++|++|||+|+|++|+||+|||++++++++++++|+.||++|++||+|+|.+
T Consensus 447 ~r~~DvlDtWfdS~~~~~~~~~~p~-~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~ 525 (862)
T 1gax_A 447 KRDEDVFDTWFSSALWPLSTLGWPE-ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEK 525 (862)
T ss_dssp EECCCCBCHHHHHTSCTTGGGTTTS-CCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTT
T ss_pred ecCCcccceeeccCCcchhhccCCC-chHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCC
Confidence 9999999999999999999999994 556899999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhcc
Q psy1860 340 GQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLAND 419 (659)
Q Consensus 340 G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~ 419 (659)
|+|||||+||||+|.+++++| |||++|||+ ++.+++ ++|++|+ .+.+++.++++++++++...
T Consensus 526 G~KMSKSlGNvIdP~dli~~y-GaDalR~~l---------l~~~~~----~~D~~fs---~~~l~~~~~f~nkl~N~~rf 588 (862)
T 1gax_A 526 GQKMSKSKGNVIDPLEMVERY-GADALRFAL---------IYLATG----GQDIRLD---LRWLEMARNFANKLYNAARF 588 (862)
T ss_dssp SCBCCTTTTCCCCHHHHHHHH-CHHHHHHHH---------HHHCCT----TCCEECC---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHc-ChHHHHHHH---------HhcCCC----CCCCccC---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999 765455 9999999 68889999999998544322
Q ss_pred chhh-cccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHccccccCCCChHhH
Q psy1860 420 AEEK-LSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADC 497 (659)
Q Consensus 420 ~~~~-~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~-~~~~~~Yle~~K~~l~~~~~~~~~ 497 (659)
.... .++... ....+..|+|++++++++++.++++|++|+|+.|++.+++|+ +++||||++++|+|++++ +
T Consensus 589 ~~~~~~~~~~~--~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~-----~ 661 (862)
T 1gax_A 589 VLLSREGFQAK--EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG-----N 661 (862)
T ss_dssp HHHHSSSCCCC--BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT-----B
T ss_pred HHhcccCCCCc--cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc-----H
Confidence 1110 011110 123578899999999999999999999999999999999999 579999999999998764 3
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1860 498 KVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRE 577 (659)
Q Consensus 498 ~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r~ 577 (659)
.+++.+++++++.+++||||||||+||+||+.|+. .+|||.+.||.++ ..|+.++..++.++++++.+|++|+
T Consensus 662 ~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~-----~~sv~~~~wP~~~--~~d~~~~~~~~~~~~v~~~~r~~r~ 734 (862)
T 1gax_A 662 AHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG-----KEELALEAWPEPG--GRDEEAERAFEALKQAVTAVRALKA 734 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC-----CSCGGGSCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC-----CCeEEecCCCCCC--cCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 56778999999999999999999999999999972 5699999999987 2689999999999999999999999
Q ss_pred HcCCCCCCCceeEEEEcCCHHHHHHHHHHHHHHHhHhCcccEE--------EEeCCceeEEEecccCCHHHHHHHHHhhH
Q psy1860 578 RVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVT--------FSTDKQKYGVSLRAEPDHKTLGARLKTAF 649 (659)
Q Consensus 578 ~~~i~~~~pl~~~~~~~~d~~~~~~l~~l~~~I~~l~nv~~v~--------~~~~~~~~~v~l~~~~d~~~~~~rl~k~~ 649 (659)
+.+++.+.|+...+ . + .. +.++.+.++|+.++|++++. ...+..++.+++.+.+|++++++||+|++
T Consensus 735 ~~~i~~~~~~~~~v-~--~-~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~rl~k~~ 809 (862)
T 1gax_A 735 EAGLPPAQEVRVYL-E--G-ET-APVEENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRL 809 (862)
T ss_dssp HHTCCTTCCEEEEE-E--E-SC-HHHHHTHHHHHHHHCEEECSSCCSSEEEEECSSEEEEEECCSCCCHHHHHHHHHHHH
T ss_pred hhcCCCCCeeEEEE-e--C-hH-HHHHHHHHHHHHHhCccccccccccceEEecCCcEEEEEeccccCHHHHHHHHHHHH
Confidence 99999999987433 2 2 22 56777888999999987662 12344566789999999999999999999
Q ss_pred HHHHHHHhh
Q psy1860 650 KPITQAIKV 658 (659)
Q Consensus 650 ~~~~~~~~~ 658 (659)
+++++++++
T Consensus 810 ~~~~~~~~~ 818 (862)
T 1gax_A 810 KELLALAER 818 (862)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 2
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.2e-108 Score=959.24 Aligned_cols=549 Identities=36% Similarity=0.639 Sum_probs=475.7
Q ss_pred cchHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCC
Q psy1860 2 QSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGV 81 (659)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l 81 (659)
+++++.+.++ +++++++++|++|+|++|.||++.. .++.+||++++||++++|||+||+|||||++||++|++|||
T Consensus 262 ~~~~~~~~~~--~~~~~~~~~G~~l~g~~~~~p~~~~--~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l 337 (821)
T 1ile_A 262 EGLGRKLLGE--GTQVLKTFPGKALEGLPYTPPYPQA--LEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL 337 (821)
T ss_dssp TTHHHHHTCT--TSCEEEEECHHHHTTCBBCCSSCCC--CSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTC
T ss_pred HHHHHHHHhh--CcEEEEEechHHhcCCEEEcCCccc--CCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCC
Confidence 4567777663 5899999999999999999999632 14679999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechH
Q psy1860 82 ITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQH 161 (659)
Q Consensus 82 ~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~ 161 (659)
++++++|++|+|++. + |+|+++++|+++|++.|+++|.+.+.++++|+||||||||+||++++++||||++++
T Consensus 338 -----~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~ 410 (821)
T 1ile_A 338 -----PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTL 410 (821)
T ss_dssp -----CCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGG
T ss_pred -----CcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHH
Confidence 899999999999988 6 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCccc---cc
Q psy1860 162 MNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVE---KD 238 (659)
Q Consensus 162 ~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~ 238 (659)
+++++++++++++|+|++.+++++.+||++++||||||||+||+|||+|+|++|+++.++++++++.+. +.+.. .+
T Consensus 411 ~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~-~~~~~~~~~~ 489 (821)
T 1ile_A 411 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKAR-ATKPLPEPFD 489 (821)
T ss_dssp GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHH-BSSCCCSSCC
T ss_pred HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhh-ccccccchhh
Confidence 999999999999999999866799999999999999999999999999999998888888888777543 32221 25
Q ss_pred cccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHh
Q psy1860 239 LHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVIST 318 (659)
Q Consensus 239 ~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~ 318 (659)
++++++|.+.++|+ || +.++|++||||||||||++|++.++||++++++|.+|||+|+|++|+||+|||++++++++.
T Consensus 490 l~~~~~d~~~~~~~-~g-~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~ 567 (821)
T 1ile_A 490 PHRPYVDQVELACA-CG-GTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGV 567 (821)
T ss_dssp CSHHHHTTCEEECT-TS-SEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHH
T ss_pred hccccccccccCCC-CC-CchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHH
Confidence 66667777666665 46 57999999999999999999999999976667789999999999999999999999999999
Q ss_pred hhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccC
Q psy1860 319 ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVW 398 (659)
Q Consensus 319 ~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw 398 (659)
++++.+||++|++||++++.+|+|||||+||||+|.+++++| |+|++|||+ ++.+++ ++|.+|+
T Consensus 568 ~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~y-GaDalR~~l---------l~~~~~----~~d~~fs-- 631 (821)
T 1ile_A 568 MLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKF-GADALRWYI---------YVSAPP----EADRRFG-- 631 (821)
T ss_dssp HHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTT-CHHHHHHHH---------HHHSCS----SSCEECC--
T ss_pred HhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHh-CHHHHHHHH---------HhCCCC----CCCcEec--
Confidence 999999999999999999999999999999999999999999 999999999 766455 8999999
Q ss_pred chhhhHH-HHHHHHHHHHHhccch---hhccccc-cc-ccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q psy1860 399 EPVHVWS-VCLILKEKVLLANDAE---EKLSFQY-NE-AEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLF 472 (659)
Q Consensus 399 ~~~~~~~-~~~~~~~l~~l~n~~~---~~~~~~~-~~-~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f 472 (659)
.+.+++ +++++++++++.+... ....+.. .. ........|+|++++++.+++.+.++|++|+|+.|++.+++|
T Consensus 632 -~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f 710 (821)
T 1ile_A 632 -PNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDF 710 (821)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 566777 5788888854332110 0111211 10 012356789999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCC-CceeccCCCCC
Q psy1860 473 I-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLER-SIHFIMMPQPN 550 (659)
Q Consensus 473 ~-~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~-sv~~~~~P~~~ 550 (659)
+ +++++||++.+|+++|+......+.+++.+++++++.+++||+|||||+||+||+.|+.......+ |||.+.||.++
T Consensus 711 ~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~ 790 (821)
T 1ile_A 711 VVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEAD 790 (821)
T ss_dssp HHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCC
T ss_pred HHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCC
Confidence 8 889999999999988765432234477889999999999999999999999999999742111135 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1860 551 RGIIDQEIERSVKRMQSVVELGRVIRERVTI 581 (659)
Q Consensus 551 ~~~~d~~~e~~~~~~~~~i~~~r~~r~~~~i 581 (659)
+.++|++++..++.++++++.+|++|++.++
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~r~~r~~~~~ 821 (821)
T 1ile_A 791 PALADEALVAQMRAVLKVVDLARAARAKSGV 821 (821)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCTTSCCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999999999988764
No 3
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=7.9e-109 Score=962.12 Aligned_cols=572 Identities=24% Similarity=0.408 Sum_probs=475.9
Q ss_pred cchHHHHhhcC--CceE--EEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHH
Q psy1860 2 QSRLETLFKKE--EEYE--ILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCL 77 (659)
Q Consensus 2 ~~~~~~~~~~~--~~~~--~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~ 77 (659)
+++++.+++.. +.++ ++.+++|++|+|++|.||+. ++.+||++++||++++|||+||+|||||++||++|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-----~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~ 339 (917)
T 1ffy_A 265 EALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL-----DRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQ 339 (917)
T ss_dssp HHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT-----CCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTT
T ss_pred HHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCC-----CCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHH
Confidence 46777777642 3566 88999999999999999995 467999999999999999999999999999999999
Q ss_pred hCCCCCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceee
Q psy1860 78 AGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFI 157 (659)
Q Consensus 78 ~~~l~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi 157 (659)
+||| +++++||++|+|++++++|.|+++++|+++|++.|+++|.+++.++++|+||||||||+||++|+++||||
T Consensus 340 ~~~L-----~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi 414 (917)
T 1ffy_A 340 QYEL-----PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFA 414 (917)
T ss_dssp SSSC-----CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEE
T ss_pred HcCC-----CeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEe
Confidence 9999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echHhHHHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEe-c---cHHHHHHhhCC
Q psy1860 158 RVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCV-G---SIAELHRLSGI 233 (659)
Q Consensus 158 ~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~-~---~~~~~~~~~~~ 233 (659)
+++++++++++++++++|+|++. ++++.+||++++||||||||+||+|||+|+|++ +..+.. . .++++.+..|.
T Consensus 415 ~~~~lr~~~l~~i~~~~~~P~~~-~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~~~~~i~~~~~~~g~ 492 (917)
T 1ffy_A 415 SISKVRQDILDAIENTNFKVNWG-KTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGS 492 (917)
T ss_dssp CHHHHHHHHHHHHHTSEESSHHH-HHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCT
T ss_pred eHHHHHHHHHHHHhcCcccCHHH-HHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEecCHHHHHHHHHHhhhcCC
Confidence 99999999999999999999997 589999999999999999999999999999987 444421 1 22333333344
Q ss_pred ccccccc-cccc-cccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHH
Q psy1860 234 SVEKDLH-RESV-DSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFY 311 (659)
Q Consensus 234 ~~~~~~~-~~~~-d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~ 311 (659)
..|.+.. .... +...|| .||...+.|++||||||||||++|++++++. +++ .||+|+|++|+||+||||+
T Consensus 493 ~~W~~~~~~~~~~~~~~~~--~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~----~~~--~~P~Dl~~~G~D~~r~wf~ 564 (917)
T 1ffy_A 493 NIWFEREAKDLLPEGFTHP--GSPNGTFTKETDIMDVWFDSGSSHRGVLETR----PEL--SFPADMYLEGSDQYRGWFN 564 (917)
T ss_dssp HHHHHSCHHHHSSTTCCCS--SCTTSCCEECCCEECHHHHHHTHHHHTTTTS----TTC--CSSBSEEEEEGGGGTTHHH
T ss_pred cccccCCHHHhcccccccc--cCCcccccccCCCcCeecCCCCCHHHHcCCc----hhc--CCCceEEEEEecccccHHH
Confidence 3321110 0000 122333 3466689999999999999999999887643 233 3999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCc
Q psy1860 312 TLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGR 391 (659)
Q Consensus 312 ~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~ 391 (659)
++++++.++++..||++|++||||++++|+|||||+||||+|.+++++| |||++|||+ ++ +++ ++
T Consensus 565 ~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~y-GaDalR~~l---------ls-~~~----~~ 629 (917)
T 1ffy_A 565 SSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQK-GADIARLWV---------SS-TDY----LA 629 (917)
T ss_dssp HHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHT-CHHHHHHHH---------HT-SCT----TS
T ss_pred HHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhC-CHHHHHHHH---------hc-cCC----CC
Confidence 9999999999999999999999999999999999999999999999999 999999999 76 455 89
Q ss_pred ccccccCchhhhHHHHHHHHHH-----HHHhccchhhcccccc---cccCCCChhhHHHHHHHHHHHHHHHHHHHhcchh
Q psy1860 392 LCPVHVWEPVHVWSVCLILKEK-----VLLANDAEEKLSFQYN---EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLY 463 (659)
Q Consensus 392 d~~f~lw~~~~~~~~~~~~~~l-----~~l~n~~~~~~~~~~~---~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~ 463 (659)
|++|+ .+.+++..++++++ +.++|+.. |... .....+...|+|+++++++++++++++|++|+|+
T Consensus 630 D~~fs---~~~l~~~~~~~~kl~n~~r~~l~nl~~----~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~ 702 (917)
T 1ffy_A 630 DVRIS---DEILKQTSDDYRKIRNTLRFMLGNIND----FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYL 702 (917)
T ss_dssp CEECC---HHHHHHHHHHHHHHHHHHHHHHHTSTT----CCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CcccC---HHHHHHHHHHHHHHHHHHHHHHhhhhc----cCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 99999 56777777777776 33455432 2110 0012356789999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHccccccCCCC-hHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCc
Q psy1860 464 TVVPRLVLFID-NLTNWYVRMNRRRLKGEGG-PADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSI 541 (659)
Q Consensus 464 ~a~~~l~~f~~-~~~~~Yle~~K~~l~~~~~-~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv 541 (659)
.|++.+++|++ ++++||++.+|+|+|++.. ...+++++.+++.+++.+++||+|||||+|||||+.|+.. ..+||
T Consensus 703 ~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~---~~~sv 779 (917)
T 1ffy_A 703 NIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV---KEESV 779 (917)
T ss_dssp HHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC---SSSSG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC---CCCCe
Confidence 99999999996 7999999999999987642 3446778889999999999999999999999999999631 35699
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHcCCCCCCCceeEEEEcCCHH--HHHHHHHHHHHHHhHhC
Q psy1860 542 HFIMMPQPNRGIIDQEIERSVKRMQSV----VELGRVIRERVTIPIKYPLREAVVIHNDAQ--CLQEIRTLESYILQELN 615 (659)
Q Consensus 542 ~~~~~P~~~~~~~d~~~e~~~~~~~~~----i~~~r~~r~~~~i~~~~pl~~~~~~~~d~~--~~~~l~~l~~~I~~l~n 615 (659)
|.+.||.+++ .|+.++..++.++++ ...++.+|++.++ +.++++.+.+..+++ ..+.++.+ +.++.+++
T Consensus 780 ~~~~wP~~~~--~~~~l~~~~~~~~~v~~~v~~~~~~~R~~~~i--~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~ 854 (917)
T 1ffy_A 780 HLADMPKVVE--VDQALLDKWRTFMNLRDDVNRALETARNEKVI--GKSLEAKVTIASNDKFNASEFLTSF-DALHQLFI 854 (917)
T ss_dssp GGSCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC--SSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTT
T ss_pred EecCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCceEEEEEeCChhhHHHHHhhH-HHHHHHhc
Confidence 9999999876 578888888888765 4567777887775 567776655544433 45555555 56888999
Q ss_pred cccEEEEe
Q psy1860 616 VRTVTFST 623 (659)
Q Consensus 616 v~~v~~~~ 623 (659)
++++++..
T Consensus 855 ~s~~~~~~ 862 (917)
T 1ffy_A 855 VSQVKVVD 862 (917)
T ss_dssp SSEEEECS
T ss_pred ccceEEec
Confidence 99988853
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-92 Score=833.37 Aligned_cols=525 Identities=21% Similarity=0.276 Sum_probs=421.4
Q ss_pred chHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHH-------
Q psy1860 3 SRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRV------- 75 (659)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~------- 75 (659)
++++.+..+.++++++++++|++|+|++|.||+. ++.+||++++||++++|||+||+|||||++||++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~-----~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~ 342 (967)
T 1wz2_A 268 EAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-----GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRE 342 (967)
T ss_dssp HHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSS-----SCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCC
T ss_pred HHHHHHHhhccCcEEEEEEEchhhcCCEEECCCC-----CCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccc
Confidence 4556665555679999999999999999999996 4689999999999999999999999999999985
Q ss_pred ---HHhCCCCCC---CCccc-----------------------cccCC----------------CccccCCCccccCccc
Q psy1860 76 ---CLAGGVITR---DQEIV-----------------------CPVDA----------------SGCFTAPVSHFLGLYV 110 (659)
Q Consensus 76 ---~~~~~l~~~---~~~~~-----------------------~~vd~----------------~G~~~~~~~~~~g~~v 110 (659)
|++|||+.+ +.+++ +++|+ +|+|+ +|+|.|+++
T Consensus 343 ~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v 420 (967)
T 1wz2_A 343 TEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPV 420 (967)
T ss_dssp SCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBH
T ss_pred hhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCH
Confidence 578887410 00123 23343 78887 789999999
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEc-ccCceeeech--HhHHHHHHhcCCceEecCcccchhhhh
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYK-AVPSWFIRVQ--HMNQDLLKCNSDTYWVPEFVKEKRFGN 187 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~-~~~qwFi~~~--~~k~~~~~~~~~~~~~P~~~~~~~~~~ 187 (659)
++|++.|+++|+++|.+.+.+++.| ||+|||||+||+++ +++||||+++ +||+++++++++++|+|++. ++++.+
T Consensus 421 ~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~-~~~~~~ 498 (967)
T 1wz2_A 421 QEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETR-RAQFEA 498 (967)
T ss_dssp HHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccc-cchHHH
Confidence 9999999999999999998666554 89999999999999 6999999998 59999999999999999998 489999
Q ss_pred hhcCCCceEeeeccCCCccccE---EEeCCC-CeEEEec--cHHHHHH----hhCCccccccccccccccccCCCCCCCC
Q psy1860 188 WLREARDWAISRNRYWGTPIPL---WVSDDG-EEIVCVG--SIAELHR----LSGISVEKDLHRESVDSVTIPSVRPGKP 257 (659)
Q Consensus 188 ~l~~l~Dw~ISRqr~WG~piP~---~~~~~~-~~~i~~~--~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 257 (659)
|+++++||||||||+||||||+ |.|+.. +.++|++ .+++... ..|.+.. +++.+.+|++++++
T Consensus 499 ~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~-~l~~~~~d~~~~~~------ 571 (967)
T 1wz2_A 499 IIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPE-KLTPEFFDYIFLEE------ 571 (967)
T ss_dssp HHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGG-GCCHHHHHHTTTSC------
T ss_pred hhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChH-HcCcccceeeccCc------
Confidence 9999999999999999999995 444421 1133432 2222222 2333332 45555556554321
Q ss_pred CccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceee
Q psy1860 258 PLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVL 336 (659)
Q Consensus 258 ~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~ 336 (659)
+.. .+..|+|++||+ |...+. +++++|++|||+|+|++|+||++||+..+++++.++++..|| +++++||||+
T Consensus 572 -~~~-g~~~~~~~~sG~-~~~~~~---~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~ 645 (967)
T 1wz2_A 572 -FSE-DKEKELEKKTGI-PAEIIH---EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGT 645 (967)
T ss_dssp -CCH-HHHHHHHHHHTC-CHHHHH---HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEE
T ss_pred -ccc-CccccchhhcCC-CHHHHh---hhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEe
Confidence 111 245667777774 433322 234678999999999999999999988889999999888777 9999999999
Q ss_pred cCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHH
Q psy1860 337 AQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLL 416 (659)
Q Consensus 337 ~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l 416 (659)
+ +|+|||||+||||+|.+++++| |||++|||+ +.++++ ++|.+|+ ++.++++.+++++++++
T Consensus 646 ~-~G~KMSKS~GNvv~p~d~i~~y-GaDalR~~l---------l~~~~~----~~d~~fs---~~~~~~~~~~l~rl~n~ 707 (967)
T 1wz2_A 646 L-EGQKMSKSKGNVLNFIDAIEEN-GADVVRLYI---------MSLAEH----DSDFDWR---RKEVGKLRKQIERFYEL 707 (967)
T ss_dssp E-SSSCCCTTTCCCCBHHHHHHTT-CHHHHHHHH---------HHHCCT----TCCEEEC---HHHHHHHHHHHHHHHHH
T ss_pred e-CCEEccccccCCCCHHHHHHHh-ChHHHHHHH---------HhCCCC----CCCcccC---HHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999 999999999 755555 8999999 68889999999988544
Q ss_pred hccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHh
Q psy1860 417 ANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPAD 496 (659)
Q Consensus 417 ~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~ 496 (659)
...... .. .......+..|+|++++++.++++++++|++|+|+.|++.++.++...+|||++.+|++ .
T Consensus 708 ~~~~~~---~~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~-----~--- 775 (967)
T 1wz2_A 708 ISQFAE---YE-VKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR-----D--- 775 (967)
T ss_dssp HHHHHS---SC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC-----C---
T ss_pred HHHHhc---CC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccch-----h---
Confidence 322111 10 00122456789999999999999999999999999999987644444478999988752 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy1860 497 CKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIR 576 (659)
Q Consensus 497 ~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i~~~r~~r 576 (659)
+.+++.+++++++.+++||+|||||+||+||+.|+ ..+|||.+.||.+++.++|++++..++.++.+++.+|++|
T Consensus 776 ~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~-----~~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~ 850 (967)
T 1wz2_A 776 DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG-----GEGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEII 850 (967)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSS-----CCSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcC-----CCCceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 13677899999999999999999999999999995 3579999999999988889999999999999999999999
Q ss_pred HHcCCCCCCC
Q psy1860 577 ERVTIPIKYP 586 (659)
Q Consensus 577 ~~~~i~~~~p 586 (659)
++.++ +.|
T Consensus 851 ~~~~~--~~p 858 (967)
T 1wz2_A 851 EVAKI--ENA 858 (967)
T ss_dssp HTSCC--CCS
T ss_pred HHhCC--CCC
Confidence 99886 555
No 5
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-81 Score=733.81 Aligned_cols=476 Identities=20% Similarity=0.291 Sum_probs=369.2
Q ss_pred chHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHH-------
Q psy1860 3 SRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRV------- 75 (659)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~------- 75 (659)
++++.+..+.++++++.+++|++|+|++|.||+. ++.+||++++||++++|||+||+|||||++||++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-----~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~ 342 (810)
T 1wkb_A 268 EAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-----GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRE 342 (810)
T ss_dssp HHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSS-----CCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCC
T ss_pred HHHHHHHhhhcceEEEEEEEchhhcCCEEECCCC-----CCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccc
Confidence 4555655555678999999999999999999996 4689999999999999999999999999999986
Q ss_pred ---HHhCCCCCC---CCcccccc-----------------------CC----------------CccccCCCccccCccc
Q psy1860 76 ---CLAGGVITR---DQEIVCPV-----------------------DA----------------SGCFTAPVSHFLGLYV 110 (659)
Q Consensus 76 ---~~~~~l~~~---~~~~~~~v-----------------------d~----------------~G~~~~~~~~~~g~~v 110 (659)
|++|||+.+ ..++++++ |+ +|+++ +|+|+|+.+
T Consensus 343 ~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v 420 (810)
T 1wkb_A 343 TEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPV 420 (810)
T ss_dssp SCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEH
T ss_pred hhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEH
Confidence 467887410 00133332 32 68887 689999999
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEc-ccCceeeechH--hHHHHHHhcCCceEecCcccchhhhh
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYK-AVPSWFIRVQH--MNQDLLKCNSDTYWVPEFVKEKRFGN 187 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~-~~~qwFi~~~~--~k~~~~~~~~~~~~~P~~~~~~~~~~ 187 (659)
++|+++|++.|+++|.+.+.+++.| ||+|||||+||+++ +++||||++++ +++++++++++++|+|++. ++++.+
T Consensus 421 ~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~-~~~~~~ 498 (810)
T 1wkb_A 421 QEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETR-RAQFEA 498 (810)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGG-HHHHHH
T ss_pred HHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcch-hchHHH
Confidence 9999999999999999998777766 89999999999999 69999999985 9999999999999999988 589999
Q ss_pred hhcCCCceEeeeccCCCccccE---EEeCCC-CeEEEeccHH--HHHH----hhCCccccccccccccccccCCCCCCCC
Q psy1860 188 WLREARDWAISRNRYWGTPIPL---WVSDDG-EEIVCVGSIA--ELHR----LSGISVEKDLHRESVDSVTIPSVRPGKP 257 (659)
Q Consensus 188 ~l~~l~Dw~ISRqr~WG~piP~---~~~~~~-~~~i~~~~~~--~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 257 (659)
|+++++||||||||+||+|||+ |.++.. +.++|++..+ +... ..|.+.. +++.+.+|++++.+
T Consensus 499 ~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~------ 571 (810)
T 1wkb_A 499 IIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPE-KLTPEFFDYIFLEE------ 571 (810)
T ss_dssp HHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGG-GCCHHHHHHHHHSC------
T ss_pred HhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHH-HcCccceeeeeccc------
Confidence 9999999999999999999994 566542 2355554322 2111 2222221 33333333332210
Q ss_pred CccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhHHHHHHHHHhhhcCCCCC-CeEEEeceee
Q psy1860 258 PLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPF-RNLIANGLVL 336 (659)
Q Consensus 258 ~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~-k~v~~hG~v~ 336 (659)
+.. .+++++||+||+ |...+. +++++|++|||+|+|++|+||+++|+..+++++.++++..|| +++++||||+
T Consensus 572 -~~~-g~~~~~~~~sg~-~~~~~~---~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~ 645 (810)
T 1wkb_A 572 -FSE-DKEKELEKKTGI-PAEIIH---EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGT 645 (810)
T ss_dssp -CCH-HHHHHHHHHHSC-CHHHHH---HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEE
T ss_pred -ccc-CccccchhhhCC-CHHHHH---hhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEE
Confidence 001 134556666664 222221 123568899999999999999999987788888888887565 9999999999
Q ss_pred cCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHH
Q psy1860 337 AQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLL 416 (659)
Q Consensus 337 ~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l 416 (659)
+ +|+|||||+||||+|.+++++| |+|++|||+ +.++++ ++|++|+ .+.++++.+++++++.+
T Consensus 646 ~-~G~KMSKS~GNvv~p~dli~~y-GaDalR~~l---------l~~~~~----~~d~~fs---~~~~~~~~~~l~rl~n~ 707 (810)
T 1wkb_A 646 L-EGQKMSKSKGNVLNFIDAIEEN-GADVVRLYI---------MSLAEH----DSDFDWR---RKEVGKLRKQIERFYEL 707 (810)
T ss_dssp E-TTBCCCTTTTCCCBHHHHHHHH-CHHHHHHHH---------HHHCCT----TCCEEEC---HHHHHHHHHHHHHHHHH
T ss_pred e-CCeehhhcCCCcCCHHHHHHHc-ChHHHHHHH---------HhcCCC----CCCcccC---HHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999 999999999 655455 8999999 68888999999988544
Q ss_pred hccchhhcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHHHHHHHHccccccCCCChH
Q psy1860 417 ANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLV-LFIDNLTNWYVRMNRRRLKGEGGPA 495 (659)
Q Consensus 417 ~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~-~f~~~~~~~Yle~~K~~l~~~~~~~ 495 (659)
...... .. .+........|+|++++++.+++.+.++|++|+|+.|+..++ .+++. +++|++.+|++ +
T Consensus 708 ~~~~~~---~~-~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~-~n~yi~~~k~~-----~-- 775 (810)
T 1wkb_A 708 ISQFAE---YE-VKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRTEGR-----D-- 775 (810)
T ss_dssp HHHHHT---CC-CCSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHTTTC-----C--
T ss_pred HHHHHh---cc-CcccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHhcCc-----c--
Confidence 322111 10 001223567899999999999999999999999999998764 66555 78999988752 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy1860 496 DCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLR 531 (659)
Q Consensus 496 ~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 531 (659)
+ ..++.+++++++.+++||+|||||+||+||+.|+
T Consensus 776 ~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 776 D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred h-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 1 1226789999999999999999999999999884
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=5.9e-79 Score=707.91 Aligned_cols=452 Identities=20% Similarity=0.279 Sum_probs=330.7
Q ss_pred EEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCC---
Q psy1860 18 LDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDA--- 94 (659)
Q Consensus 18 ~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~--- 94 (659)
..+++|. |.|.++.||+. ++.+||+.++||++++|||+||+|||||++||++|++||| ++++++|.
T Consensus 299 ~~~~~G~-~~g~~~~~P~~-----~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L-----~i~~vi~~~~~ 367 (878)
T 2v0c_A 299 GREKTGV-FLGAYALNPAT-----GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL-----PIKKVIERPGE 367 (878)
T ss_dssp SSCCCCE-EEEEEEECTTT-----CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC-----CCCCCEECSSS
T ss_pred cceeeeE-ecCcEEECCCC-----CCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCC-----CceeeeCCCCc
Confidence 3567888 99999999995 5689999999999999999999999999999999999999 77888864
Q ss_pred ------CccccCC-----CccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhH
Q psy1860 95 ------SGCFTAP-----VSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMN 163 (659)
Q Consensus 95 ------~G~~~~~-----~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k 163 (659)
+|.|++. +++|.|+++++|+++|++.|+++|++.+ ++.
T Consensus 368 ~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~v~--------------- 416 (878)
T 2v0c_A 368 PLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG----------------RVT--------------- 416 (878)
T ss_dssp CCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE----------------EEE---------------
T ss_pred cccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCC----------------ceE---------------
Confidence 3455543 5789999999999999999999998532 111
Q ss_pred HHHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccH--------HHHHHhhCCcc
Q psy1860 164 QDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSI--------AELHRLSGISV 235 (659)
Q Consensus 164 ~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~--------~~~~~~~~~~~ 235 (659)
| +++||||||||+||+|||+|||++|+.+++.... +.+....+...
T Consensus 417 ------------------------~--rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~ 470 (878)
T 2v0c_A 417 ------------------------Y--RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 470 (878)
T ss_dssp ------------------------E--SCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSS
T ss_pred ------------------------E--ecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCC
Confidence 1 5789999999999999999999988765532110 11100111111
Q ss_pred c-cccccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCC-----cccccccCCcceEeeccccchhH
Q psy1860 236 E-KDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDN-----RRDFDDRFPADFIAEGIDQTRGW 309 (659)
Q Consensus 236 ~-~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~-----~~~~~~~~p~d~~~~G~D~~~~w 309 (659)
. .+.+++++ ...|| .|| +.++|++|||||||||+ ||+....+|.++ ++++++|||+|+|++|+||+..|
T Consensus 471 ~pl~~~~~~~-~~~cp--~cg-~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilh 545 (878)
T 2v0c_A 471 SPLEAHPEFY-ETTCP--KCG-GPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLH 545 (878)
T ss_dssp CGGGGCHHHH-EEECT--TTC-SEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTH
T ss_pred ChhhhhHhhc-CCcCC--CCC-Ccceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHH
Confidence 1 02233333 23344 345 47999999999999997 777777777532 35678899999999999997665
Q ss_pred -----HHHHHHHHhh-hcCCCCCCeEEEeceeecC---------------------------------------------
Q psy1860 310 -----FYTLLVISTA-LFKQAPFRNLIANGLVLAQ--------------------------------------------- 338 (659)
Q Consensus 310 -----~~~~ll~~~~-~~~~~p~k~v~~hG~v~~~--------------------------------------------- 338 (659)
||.++|.+++ +.+++||++|++||||+|+
T Consensus 546 l~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (878)
T 2v0c_A 546 LLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPH 625 (878)
T ss_dssp HHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeecc
Confidence 3344555555 4678999999999999984
Q ss_pred -CC-------CccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHH
Q psy1860 339 -DG-------QKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLIL 410 (659)
Q Consensus 339 -~G-------~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~ 410 (659)
+| +|||||+||+|+|.+++++| |||++|||+ ++.+++ ++|.+|+ ++.+++..+++
T Consensus 626 ~~G~~~~~~~~KMSKSkGNvVdP~diI~~y-GADalRl~l---------l~~~~~----~~D~~fs---~~~v~~~~~~l 688 (878)
T 2v0c_A 626 EDGTLHLWKPAVMSKSKGNGVMVGPFVKEQ-GADIARITI---------LFAAPP----ENEMVWT---EEGVQGAWRFL 688 (878)
T ss_dssp TTSSEEEEEEEECSGGGTCCCBHHHHHHHS-CHHHHHHHH---------HHHSCT----TSCEEEC---HHHHHHHHHHH
T ss_pred CCCCchhhhHHHhhccCCCcccHHHHHHHc-CccHHHHHH---------hccCCC----CCCceeC---HHHHHHHHHHH
Confidence 89 99999999999999999999 999999999 765455 8999999 68889999999
Q ss_pred HHHHHHhccchhhcccccc-cccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHcccccc
Q psy1860 411 KEKVLLANDAEEKLSFQYN-EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLK 489 (659)
Q Consensus 411 ~~l~~l~n~~~~~~~~~~~-~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~ 489 (659)
++++.+............. .....++..|+|+++++++++++++++|++|+|++|++.+++|++++++ |.+.
T Consensus 689 ~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k-~~~~------ 761 (878)
T 2v0c_A 689 NRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYE-YRKD------ 761 (878)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHH------
T ss_pred HHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhh-hccc------
Confidence 9986543211111000000 0012356789999999999999999999999999999999999987665 4431
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCCCCCCHHHHHHHHHHHHHH
Q psy1860 490 GEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVV 569 (659)
Q Consensus 490 ~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~~~~d~~~e~~~~~~~~~i 569 (659)
.. . ..+++++++.+++||+|||||+|||||+.|+ .+||+.+.||.+++.++.++ .+..++
T Consensus 762 ~~-~-------~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg------~~sv~~~~wP~~d~~~l~~~------~~~~~v 821 (878)
T 2v0c_A 762 RP-V-------TPVYRTAIRYYLQMLFPFAPHLAEELWHWFW------PDSLFEAGWPELDEKALEKD------VVEVAV 821 (878)
T ss_dssp CC-S-------CHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC------SSCGGGSCCCCCCGGGGC--------------
T ss_pred ch-h-------HHHHHHHHHHHHHHHcccchHHHHHHHHHcC------CCceeecCCCCCCHHHHHHH------HHHHHH
Confidence 11 0 1478999999999999999999999999995 56999999999877544322 344567
Q ss_pred HHHHHHHHHcCCCCCCC
Q psy1860 570 ELGRVIRERVTIPIKYP 586 (659)
Q Consensus 570 ~~~r~~r~~~~i~~~~p 586 (659)
++++++|++.+++....
T Consensus 822 qvngkvR~~i~v~~~~~ 838 (878)
T 2v0c_A 822 QVNGAVAGTIHIPKDAP 838 (878)
T ss_dssp -----------------
T ss_pred hhHHHHHHHcccCcCCC
Confidence 88889998888776544
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=7.1e-77 Score=684.12 Aligned_cols=417 Identities=22% Similarity=0.296 Sum_probs=323.7
Q ss_pred eeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccC------
Q psy1860 20 SFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVD------ 93 (659)
Q Consensus 20 ~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd------ 93 (659)
+.+|. +.|.++.||+. ++.+||+.++||++++|||+||+|||||++||++|++||| |++++++
T Consensus 319 ~~~g~-~~g~~~~~P~~-----~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~L-----pi~~vi~~~~~~~ 387 (880)
T 4arc_A 319 EKKGV-DTGFKAVHPLT-----GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL-----NIKPVILAADGSE 387 (880)
T ss_dssp --CEE-EEEEEEECTTT-----CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTC-----CCCCCBCCTTSCC
T ss_pred eeecc-ccCcEEecCCC-----CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCC-----CceEeeccCcccc
Confidence 56776 78999999996 5789999999999999999999999999999999999999 5555553
Q ss_pred ---------CCccccCCCccccCcccccCchHHHHHHHhcCCEeEeecccccCCccccCCCcEEEcccCceeeechHhHH
Q psy1860 94 ---------ASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQ 164 (659)
Q Consensus 94 ---------~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~ 164 (659)
++|++. ++++|.||++++|+++|+++|+++|++.+. +
T Consensus 388 ~~~~~~~~~~~g~~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~----------------v----------------- 433 (880)
T 4arc_A 388 PDLSQQALTEKGVLF-NSGEFNGLDHEAAFNAIADKLTAMGVGERK----------------V----------------- 433 (880)
T ss_dssp CCCSSSCCCSCCCBC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE----------------E-----------------
T ss_pred cccccccccCCceee-cCcccCCCCHHHHHHHHHHHHHHcCCccee----------------E-----------------
Confidence 134443 468999999999999999999999987542 0
Q ss_pred HHHHhcCCceEecCcccchhhhhhhcCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHHHHHhhC----C--ccccc
Q psy1860 165 DLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSG----I--SVEKD 238 (659)
Q Consensus 165 ~~~~~~~~~~~~P~~~~~~~~~~~l~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~----~--~~~~~ 238 (659)
+ | +++|||||||||||+|||+|||++|+.+.+.. +.++-... . .+. .
T Consensus 434 ---------~-------------y--rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~--~~Lpv~lp~~~~~~~~g~-p 486 (880)
T 4arc_A 434 ---------N-------------Y--RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPD--DQLPVILPEDVVMDGITS-P 486 (880)
T ss_dssp ---------E-------------E--SCCCEECEESCSSSCBCCEEEETTSCEEECCG--GGCSCCCCSSCCCCSSSC-H
T ss_pred ---------E-------------E--EcccceeeeeeccCCcceEEEECCCCeEeCCh--HHCccccchhcccCCCCC-c
Confidence 0 1 57899999999999999999999998766432 22211000 0 001 1
Q ss_pred c-ccccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCC-----cccccccCCcceEeeccccchhH---
Q psy1860 239 L-HRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDN-----RRDFDDRFPADFIAEGIDQTRGW--- 309 (659)
Q Consensus 239 ~-~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~-----~~~~~~~~p~d~~~~G~D~~~~w--- 309 (659)
+ ..+.+-... |+ ++.++|++|||||||||+ ||++...||.++ ++++++|||+|+|++|.||...|
T Consensus 487 l~~~~~w~~~~----cp-g~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHlly 560 (880)
T 4arc_A 487 IKADPEWAKTT----VN-GMPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLY 560 (880)
T ss_dssp HHHSTTTTEEE----SS-SSEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHH
T ss_pred hHhCccceeec----cC-CCcceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHH
Confidence 1 001111112 33 357999999999999997 889988888643 24567899999999999975333
Q ss_pred --HHHHHHHHhhh-cCCCCCCeEEEeceee-------cCCCC------------------------------------cc
Q psy1860 310 --FYTLLVISTAL-FKQAPFRNLIANGLVL-------AQDGQ------------------------------------KM 343 (659)
Q Consensus 310 --~~~~ll~~~~~-~~~~p~k~v~~hG~v~-------~~~G~------------------------------------KM 343 (659)
||..+|...++ .+++||++|++||||+ +++|+ ||
T Consensus 561 aRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKM 640 (880)
T 4arc_A 561 FRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKM 640 (880)
T ss_dssp HHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccc
Confidence 56666666654 4689999999999997 77888 99
Q ss_pred ccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhh
Q psy1860 344 SKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEK 423 (659)
Q Consensus 344 SKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~ 423 (659)
|||+||+|+|.+++++| |||++|||+ ++.+++ ++|++|+ ++.++++++++++++.+.......
T Consensus 641 SKSkGNvVdP~diIekY-GADalRl~l---------l~~~~~----~~dl~~s---~~~ie~a~rfl~rlwn~~~~~~~~ 703 (880)
T 4arc_A 641 SKSKNNGIDPQVMVERY-GADTVRLFM---------MFASPA----DMTLEWQ---ESGVEGANRFLKRVWKLVYEHTAK 703 (880)
T ss_dssp CTTTTCCCCHHHHHHHH-CHHHHHHHH---------HHSSCT----TSCEECC---HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcCCCCCCHHHHHHHc-CchHHHHHH---------HhcCCC----CCCcccC---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 999999999 766556 8999999 688999999999996544321110
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHH
Q psy1860 424 LSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMA-AYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALN 502 (659)
Q Consensus 424 ~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e-~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~ 502 (659)
... .......++..|+|+++++++++++++++|+ +|+|++|++++++|++.+++ | .... ..+..
T Consensus 704 ~~~-~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k-~---------~~~~----~~~~~ 768 (880)
T 4arc_A 704 GDV-AALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAK-A---------PTDG----EQDRA 768 (880)
T ss_dssp CCC-CCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-S---------CCSS----HHHHH
T ss_pred ccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHh-h---------hccc----hHHHH
Confidence 000 0001234578899999999999999999999 89999999999999987653 2 1111 23456
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHhhhhcCCCCCCceeccCCCCCC
Q psy1860 503 SLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNR 551 (659)
Q Consensus 503 ~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~~~~~~sv~~~~~P~~~~ 551 (659)
+++++++.+++||+|||||+|||||+.|+ ..+||+.++||.+++
T Consensus 769 ~l~~~l~~ll~LLaPf~PhiaEElW~~Lg-----~~~sv~~~~wP~~d~ 812 (880)
T 4arc_A 769 LMQEALLAVVRMLNPFTPHICFTLWQELK-----GEGDIDNAPWPVADE 812 (880)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHTT-----CSSCGGGSCCCCCCH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHcC-----CCCeEEeCCCCCCCH
Confidence 89999999999999999999999999996 357999999998764
No 8
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.2e-58 Score=516.72 Aligned_cols=341 Identities=20% Similarity=0.258 Sum_probs=262.5
Q ss_pred cCchHHHHHHHhcCCEeEeecccccC-------------------CccccCCCcEEEcccCceeeechHhHHHHHHhcCC
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKHSY-------------------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD 172 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h~~-------------------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~ 172 (659)
+..+.+++.|.++|+++... +...| .+|++||+|++++.++||||+++++++++++++++
T Consensus 124 ~~v~~~~~~L~~~G~iY~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 202 (536)
T 4dlp_A 124 KASQAIWQAMVANGDIYKGG-YAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN 202 (536)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEec-eeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHh
Confidence 45678999999999998632 11111 25999999999999999999999999999999864
Q ss_pred --ceEecCcccchhhhhhhc-CCCceEeeecc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccc
Q psy1860 173 --TYWVPEFVKEKRFGNWLR-EARDWAISRNR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVT 248 (659)
Q Consensus 173 --~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 248 (659)
..+.|+.. ++++.+|++ +++|||||||+ +||||||. +
T Consensus 203 ~~~~i~P~~~-~~~~~~~l~~~l~D~~ISR~~~~WGipiP~----~---------------------------------- 243 (536)
T 4dlp_A 203 NPGFIMPAER-RNEIVSFVKSGLKDLSISRTTFDWGIPVPG----D---------------------------------- 243 (536)
T ss_dssp CTTSEESHHH-HHHHHHHHHTCCCCEECEEC--CCSCBCTT----C----------------------------------
T ss_pred CCCccCcHHH-HHHHHHHHhcCCCccCCccCCCcCCeeCCC----C----------------------------------
Confidence 45789987 589999998 89999999996 89999992 1
Q ss_pred cCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCCCC
Q psy1860 249 IPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQAPF 326 (659)
Q Consensus 249 ~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~ 326 (659)
+.+|+||||||+++|+++++||.+ ..+|+.+||+|++++|+||++|| ||+++++++++ .||
T Consensus 244 -------------~~~v~yvWfda~~~y~s~~~~~~~-~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~---~~~ 306 (536)
T 4dlp_A 244 -------------EKHVMYVWVDALTNYITALGYPDT-TDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQL---PLP 306 (536)
T ss_dssp -------------TTSEECHHHHHHHHHHHTTTTTCT-TSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTC---CCC
T ss_pred -------------CCCceEEeeCCcHHHHHhcCCCCC-chHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCC---CCC
Confidence 135889999999999999999853 46799999999999999999998 78888888654 788
Q ss_pred CeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHH-
Q psy1860 327 RNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWS- 405 (659)
Q Consensus 327 k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~- 405 (659)
++|++||||++ +|+|||||+||+|+|.+++++| |+|++|||+ ++.+++ ++|++|+ . +.+..
T Consensus 307 ~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~~~-GaDalR~~l---------l~~~~~----~~d~~fs--~-~~~~~~ 368 (536)
T 4dlp_A 307 KRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERY-GLDQLRYFL---------MREVPF----GQDGSYS--H-EAIVNR 368 (536)
T ss_dssp SCEEEECCEEC-------------CCHHHHHHHH-CHHHHHHHH---------HHHSCT----TSCEECC--H-HHHHHH
T ss_pred cEEEeeeeEee-CCceecccCCCCCCHHHHHHHc-CcHHHHHHH---------HhcCCC----CCCCCCC--H-HHHHHH
Confidence 99999999997 9999999999999999999999 999999999 664344 8999999 3 22222
Q ss_pred HH-HHHHHHHHHhccchhhc-----cccc-ccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q psy1860 406 VC-LILKEKVLLANDAEEKL-----SFQY-NEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTN 478 (659)
Q Consensus 406 ~~-~~~~~l~~l~n~~~~~~-----~~~~-~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~ 478 (659)
.. ++++++ +|+..+.. .+.. .+........|+|++++++++++.+.++|++|+|+.|++.+++|+ +++|
T Consensus 369 ~n~~l~~~l---~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~-~~~n 444 (536)
T 4dlp_A 369 TNADLANDL---GNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV-AEAN 444 (536)
T ss_dssp HHHHCCCCC---HHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHH
Confidence 11 122222 22111100 0100 001234578899999999999999999999999999999999997 5799
Q ss_pred HHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy1860 479 WYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLR 531 (659)
Q Consensus 479 ~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 531 (659)
+|++..|+|.....+.+++.+++.+++++++.+++||+|||||+||+||++|+
T Consensus 445 ~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~ 497 (536)
T 4dlp_A 445 RYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILA 497 (536)
T ss_dssp HHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTT
T ss_pred HHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcC
Confidence 99999998532222344567788999999999999999999999999999996
No 9
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.5e-58 Score=515.20 Aligned_cols=343 Identities=18% Similarity=0.175 Sum_probs=276.8
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccC---------------------Ccc---ccCCCcEEEcccCceeeechHhHHHH
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSY---------------------PFC---WRSDTPLIYKAVPSWFIRVQHMNQDL 166 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~---------------------p~~---~r~g~~v~~~~~~qwFi~~~~~k~~~ 166 (659)
.+..+.+++.|.++|+++.. ++...| ..| ++||+|++++.++||||+++++++++
T Consensus 124 ~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l 202 (564)
T 3kfl_A 124 EKLVQDIWKKLAAKGDIYLG-KYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERL 202 (564)
T ss_dssp HHHHHHHHHHHHHHTCEEEE-EEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEe-eeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHH
Confidence 35668899999999999863 222221 223 47899999999999999999999999
Q ss_pred HHhcCC--ceEecCcccchhhhhhhc-CCCceEeee----ccCCCccccEEEeCCCCeEEEeccHHHHHHhhCCcccccc
Q psy1860 167 LKCNSD--TYWVPEFVKEKRFGNWLR-EARDWAISR----NRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDL 239 (659)
Q Consensus 167 ~~~~~~--~~~~P~~~~~~~~~~~l~-~l~Dw~ISR----qr~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 239 (659)
++++++ ..+.|++. ++++.+||+ +++|||||| |++||||||. +
T Consensus 203 ~~~~~~~~~~i~P~~~-~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~----~------------------------- 252 (564)
T 3kfl_A 203 LKYFHDHPNCIVPEFR-RREVIKTVEKGLFDLSISRKRESVMNWSIPVPG----D------------------------- 252 (564)
T ss_dssp HHHHHHCTTSEESHHH-HHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----E-------------------------
T ss_pred HHHHHhCCCccCCHHH-HHHHHHHHhCCCCCccccCcCCCCCCCCeecCC----C-------------------------
Confidence 999863 56899987 589999998 899999999 7899999992 1
Q ss_pred ccccccccccCCCCCCCCCccccccccceeccCCCCccccccC-CCCCcc-----cc--cccCCcceEeeccccchhH--
Q psy1860 240 HRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHF-PFDNRR-----DF--DDRFPADFIAEGIDQTRGW-- 309 (659)
Q Consensus 240 ~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~-~~~~~~-----~~--~~~~p~d~~~~G~D~~~~w-- 309 (659)
+.+|+||||||+++|+++++| |.++.+ +| +++||+|++++|+||++||
T Consensus 253 ----------------------~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~ 310 (564)
T 3kfl_A 253 ----------------------ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAI 310 (564)
T ss_dssp ----------------------EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHT
T ss_pred ----------------------CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHH
Confidence 235889999999999999998 754332 27 8999999999999999998
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCcccc
Q psy1860 310 FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVR 389 (659)
Q Consensus 310 ~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~ 389 (659)
||+++|+++++ .||++|++||||. .+|+|||||+||||+|.+++++| |+|++|||+ ++.+++
T Consensus 311 ~wpa~L~a~g~---~~~~~v~~hg~v~-~~G~KMSKS~GNvV~p~d~i~~~-G~DalR~~l---------l~~~~~---- 372 (564)
T 3kfl_A 311 YWPAFLMSAEL---PLPERLVSHGWWT-KDHKKISKSLGNAFDPVEKAKEF-GIDALKYFL---------MRESNF---- 372 (564)
T ss_dssp HHHHHHHHTTC---CCCSCEEEECCEE-ETTEECCTTTTCCCCHHHHHHHH-CHHHHHHHH---------HHHCCS----
T ss_pred HHHHHHHhCCC---CCCcEEEEcccEe-eCCccccccCCCCCCHHHHHHHc-CcHHHHHHH---------HHcCCc----
Confidence 79899888754 7889999999995 69999999999999999999999 999999999 764445
Q ss_pred CcccccccCchhhhHHH--HHHHHHHHHHhccchhhcccc--cc---cccCCCChhhHHHHHHHHHHHHHHHHHHHhcch
Q psy1860 390 GRLCPVHVWEPVHVWSV--CLILKEKVLLANDAEEKLSFQ--YN---EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRL 462 (659)
Q Consensus 390 ~~d~~f~lw~~~~~~~~--~~~~~~l~~l~n~~~~~~~~~--~~---~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~ 462 (659)
++|++|+ . +.+... .++++++ +|+..+...+. .. +........|+|++++++++++.+.++|++|+|
T Consensus 373 ~~D~~fs--~-~~~~~~~n~~l~~~l---~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~ 446 (564)
T 3kfl_A 373 QDDGDYS--D-KNMVARLNGELADTL---GNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDI 446 (564)
T ss_dssp SCCEECC--H-HHHHHHHHHTTTTTH---HHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccCCCCC--H-HHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 8999999 3 222221 1233333 33222211110 00 012345688999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcccc-ccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 463 YTVVPRLVLFIDNLTNWYVRMNRRR-LKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 463 ~~a~~~l~~f~~~~~~~Yle~~K~~-l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
+.|++.+++|++ ++|+|++..|+| +.. .+.+++.+++.+++++++.+++||+|||||+||+||+.|+.
T Consensus 447 ~~a~~~i~~l~~-~~n~Y~~~~kpW~l~~-~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 447 QHALIAIFDVLR-SLNAYVTENAPWKLVK-MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH-HHHHHHHhcCChhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 999999999975 699999999985 544 34456778899999999999999999999999999999973
No 10
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=5.4e-58 Score=524.20 Aligned_cols=348 Identities=16% Similarity=0.199 Sum_probs=273.4
Q ss_pred ccCchHHHHHHHhcCCEeEeec-------------------------------------------ccccCCccccCCCcE
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGS-------------------------------------------VKHSYPFCWRSDTPL 147 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~-------------------------------------------~~h~~p~~~r~g~~v 147 (659)
.++.+.++..|.++|+++.... .++.+|+|||||+|+
T Consensus 101 ~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v 180 (722)
T 1rqg_A 101 YKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPI 180 (722)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBC
T ss_pred HHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEe
Confidence 3566789999999999986321 134468999999999
Q ss_pred EEcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhh-cCCCceEeeeccCCCccccEEEeCCCCeEEEeccHHH
Q psy1860 148 IYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWL-REARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAE 226 (659)
Q Consensus 148 ~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l-~~l~Dw~ISRqr~WG~piP~~~~~~~~~~i~~~~~~~ 226 (659)
+++.++||||+++++++++++++++..| |++. ++++.+|| ++++|||||||++||+|||+|++...
T Consensus 181 ~~~~~~qwF~~l~~~~~~l~~~~~~~~w-p~~~-~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~----------- 247 (722)
T 1rqg_A 181 SFRDSAHYYIKMQDFAERLKRWIEKQPW-KPNV-KNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMK----------- 247 (722)
T ss_dssp EEEEEEEEEECGGGTHHHHHHHHHSSCC-CHHH-HHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSST-----------
T ss_pred EEEEeccEEEEhHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHCCCcccceeccccCccccCccccCCC-----------
Confidence 9999999999999999999999987774 7776 48999999 69999999999999999997432111
Q ss_pred HHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCCCCcccccc-CCCC--CcccccccCCc-c-----
Q psy1860 227 LHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLH-FPFD--NRRDFDDRFPA-D----- 297 (659)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~-~~~~--~~~~~~~~~p~-d----- 297 (659)
.+++|||||+.+.|++..+ |+.. ..+.|+.|||+ |
T Consensus 248 ------------------------------------~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~ 291 (722)
T 1rqg_A 248 ------------------------------------GKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRV 291 (722)
T ss_dssp ------------------------------------TCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEE
T ss_pred ------------------------------------CCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCee
Confidence 2467788888777665443 3211 12357777763 2
Q ss_pred eEeeccccchhH--HHHHHHHHhhh-------cC-CCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhh
Q psy1860 298 FIAEGIDQTRGW--FYTLLVISTAL-------FK-QAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLV 367 (659)
Q Consensus 298 ~~~~G~D~~~~w--~~~~ll~~~~~-------~~-~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR 367 (659)
+|++|+|+++|| +|++++++.+. .+ ..| ++|++||||++ +|+|||||+||+|+|.+++++| |+|++|
T Consensus 292 ~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~y-gaDalR 368 (722)
T 1rqg_A 292 IHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVF-PADYLR 368 (722)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTS-CHHHHH
T ss_pred EEEccccccccchhhhHHHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhc-CchHHH
Confidence 899999999999 68998887652 12 466 99999999999 9999999999999999999999 999999
Q ss_pred hhcccccccccccCCCCCccccCcccccccCchhhhHH---------HHHHHHHHHHHhccchhhcccccccc-cCCCCh
Q psy1860 368 LSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWS---------VCLILKEKVLLANDAEEKLSFQYNEA-EGSTNI 437 (659)
Q Consensus 368 ~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~---------~~~~~~~l~~l~n~~~~~~~~~~~~~-~~~~~~ 437 (659)
||+ ++.+++ ++|.+|+ . +.+.. +.+++++...+.+. .+..... ......
T Consensus 369 ~~l---------l~~~~~----~~D~~fs--~-~~~~~~~n~~l~~~l~N~~~R~~~~~~k-----~~~~~~~~~~~~~~ 427 (722)
T 1rqg_A 369 YYL---------TTIMPE----TRDSDFS--F-SDFKVRINEELVNNLGNFVHRALTFVNR-----YFDGVVPERGELDE 427 (722)
T ss_dssp HHH---------HHTCCS----SSCEEEC--H-HHHHHHHHHTTTTTHHHHHHHHHHHHHH-----HSTTBCCCCCCCCH
T ss_pred HHH---------HhcCCC----CCCCccC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCCCCcccCCH
Confidence 999 776555 9999999 3 22221 22333332111100 0110000 123467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhcc
Q psy1860 438 MDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAP 517 (659)
Q Consensus 438 ~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P 517 (659)
.|+|++++++++++.+.++|++|+|+.|++.+++|+ +++|+|++.+|+|.+...+.+++.+++++++++++.+++||+|
T Consensus 428 ~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~-~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P 506 (722)
T 1rqg_A 428 LDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA-SFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEP 506 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999997 5799999999999765544455677888999999999999999
Q ss_pred chhHHHHHHHHHhhh
Q psy1860 518 YTPFLCEHLYQNLRH 532 (659)
Q Consensus 518 ~~P~~aEeiw~~L~~ 532 (659)
||||+||+||++|+.
T Consensus 507 ~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 507 FLPDASEKIWHLLNL 521 (722)
T ss_dssp TCHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHcCC
Confidence 999999999999973
No 11
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=5.5e-57 Score=505.58 Aligned_cols=353 Identities=17% Similarity=0.161 Sum_probs=267.9
Q ss_pred ccCchHHHHHHHhcCCEeEeec-----------------------ccccCCccccCCCcEEEcccCceeeechHhHHHHH
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGS-----------------------VKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLL 167 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~-----------------------~~h~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~ 167 (659)
.++...++..|.++|+++.... .-+.+++|+|||+|++++.++|||+++++++++++
T Consensus 107 ~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~ 186 (542)
T 3u1f_A 107 KAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLL 186 (542)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHH
T ss_pred HHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHH
Confidence 3567789999999999987321 12345889999999999999999999999999999
Q ss_pred HhcC--CceEecCcccchhhhhhhc-CCCceEeeeccC----CCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccc
Q psy1860 168 KCNS--DTYWVPEFVKEKRFGNWLR-EARDWAISRNRY----WGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLH 240 (659)
Q Consensus 168 ~~~~--~~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr~----WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 240 (659)
++++ ...+.|+.. ++.+.+|++ +++||||||||+ ||+|||. +.++++|+|.++...+..+....
T Consensus 187 ~~~~~~~~~~~P~~~-~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~----~~~~~~~vw~da~~~~~~~~~~~---- 257 (542)
T 3u1f_A 187 EWYHANPGCIVPEFR-RREVIRAVEKGLPDLSVSRARATLHNWAIPVPG----NPDHXVYVWLDALTNYLTGSRLR---- 257 (542)
T ss_dssp HHHHHCTTSEESHHH-HHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----EEEEEECHHHHHHTHHHHHHTEE----
T ss_pred HHHhhcccccCCchh-hHhHhhhhhccccccCccccccCcCCCCCccCC----CcCeeeeeeeccchhhhhhhhcc----
Confidence 9864 578999987 477888988 689999999997 9999994 44567777666554433221100
Q ss_pred cccccccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhH--HHHHHHHHh
Q psy1860 241 RESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVIST 318 (659)
Q Consensus 241 ~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~ 318 (659)
....| .+.+..|.| .....||+|+|++|+||++|| +|++++++.
T Consensus 258 ----------~~~~g-----~~~~~~d~~-------------------~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~ 303 (542)
T 3u1f_A 258 ----------VDESG-----KEVSLVDDF-------------------NELERFPADVHVIGKDILKFHAIYWPAFLLSA 303 (542)
T ss_dssp ----------ECTTS-----CEEEECSSG-------------------GGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ----------ccccC-----Ccccccchh-------------------hhhcCCcceEEEecccccccccchhHHHHHhh
Confidence 00001 011111111 112358999999999999999 688877776
Q ss_pred hhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccC
Q psy1860 319 ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVW 398 (659)
Q Consensus 319 ~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw 398 (659)
++ +|++.|++|||+.. +|+|||||+||||+|.+++++| |||+||||+ ++.+++ ++|++|+
T Consensus 304 g~---~~~~~v~~hg~l~~-~G~KMSKSlGNvi~p~~~i~~y-gaD~lR~~l---------~~~~~~----~~d~~fs-- 363 (542)
T 3u1f_A 304 GL---PLPKKIVAHGWWTK-DRKKISKSLGNVFDPVEKAEEF-GYDALKYFL---------LRESGF----SDDGDYS-- 363 (542)
T ss_dssp TC---CCCSCEEEECCCEE-TTBCCBTTTTBCCCHHHHHHHH-CHHHHHHHH---------HHHCCT----TSCCEEC--
T ss_pred cc---cccceeccccceec-CCceeccccCCCCChhHHHhhc-CchHHHHHH---------HhcCcc----ccccccc--
Confidence 54 67799999999876 9999999999999999999999 999999999 665445 8999999
Q ss_pred chhhhHHH-H-HHHHHHHHHhccchhhccc--ccc---cccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q psy1860 399 EPVHVWSV-C-LILKEKVLLANDAEEKLSF--QYN---EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVL 471 (659)
Q Consensus 399 ~~~~~~~~-~-~~~~~l~~l~n~~~~~~~~--~~~---~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~ 471 (659)
. +.+... + ++.+++ +|+..+...+ ... +........|+|+++++++++++++++|++|+|++|++.+++
T Consensus 364 ~-~~~~~~~n~~l~n~l---~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~ 439 (542)
T 3u1f_A 364 D-KNMIARLNGELADTL---GNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFD 439 (542)
T ss_dssp H-HHHHHHHHHTTTTTH---HHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-HHHHHHhhhHHHHHH---HHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333222 1 133344 3322221111 111 113456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy1860 472 FIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLR 531 (659)
Q Consensus 472 f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 531 (659)
|++ ++|+|++..|||....++.+++++++++++++++.+++||+|||||+||+||++|+
T Consensus 440 ~~~-~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg 498 (542)
T 3u1f_A 440 VLR-AINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLG 498 (542)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCC
Confidence 974 69999999998633333456678889999999999999999999999999999996
No 12
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=5.7e-56 Score=494.74 Aligned_cols=345 Identities=19% Similarity=0.255 Sum_probs=273.7
Q ss_pred cccCchHHHHHHHhcCCEeEeecccccC-------------------Cccc-cCCCcEEEcccCceeeechHhHHHHHHh
Q psy1860 110 VKDADKPIIKHLKEQSRLVSAGSVKHSY-------------------PFCW-RSDTPLIYKAVPSWFIRVQHMNQDLLKC 169 (659)
Q Consensus 110 v~~a~~~ii~~L~~~g~l~~~~~~~h~~-------------------p~~~-r~g~~v~~~~~~qwFi~~~~~k~~~~~~ 169 (659)
..++...+++.|.++|+++..+. ...| +.|+ |||+|++++.++|||+++++++++++++
T Consensus 109 ~~~~v~~~~~~L~~~G~iY~~~~-~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~ 187 (524)
T 2x1l_A 109 HYEASKAIWKRMADAGDIYLDAY-KGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLAL 187 (524)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE-EEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEeeee-eeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHH
Confidence 34566789999999999986321 1111 2477 9999999999999999999999999999
Q ss_pred cCC--ceEecCcccchhhhhhhc-CCCceEeeecc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCcccccccccccc
Q psy1860 170 NSD--TYWVPEFVKEKRFGNWLR-EARDWAISRNR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVD 245 (659)
Q Consensus 170 ~~~--~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d 245 (659)
+++ ..+.|+.. ++++.+|++ +++|||||||| +||+|||. +
T Consensus 188 ~~~~~~~i~p~~~-~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~----~------------------------------- 231 (524)
T 2x1l_A 188 YEEHPEFIGPDAR-RNEIVSFVSGGLKDLSISRTTFDWGVPVPD----H------------------------------- 231 (524)
T ss_dssp HHHCGGGEESHHH-HHHHHHHHTTCCCCEECEESSCCSSCEETT----E-------------------------------
T ss_pred HHhCCCeeCCHHH-HHHHHHHHHcCCcccceECCCCCcCccCCC----C-------------------------------
Confidence 863 45789987 588999995 89999999998 69999992 1
Q ss_pred ccccCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhH--HHHHHHHHhhhcCC
Q psy1860 246 SVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQ 323 (659)
Q Consensus 246 ~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~ 323 (659)
+.+++||||||+++|++.++||.++...|.++||+|+|++|+||++|| ++++++.+++ .
T Consensus 232 ----------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g---~ 292 (524)
T 2x1l_A 232 ----------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG---L 292 (524)
T ss_dssp ----------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHT---C
T ss_pred ----------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCC---C
Confidence 124788999999999989999865555788999999999999999998 6777777764 4
Q ss_pred CCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhh
Q psy1860 324 APFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHV 403 (659)
Q Consensus 324 ~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~ 403 (659)
.||+++++||||++ +|+|||||+||+|+|.+++++| |+|++|||+ ++.+++ ++|.+|+ .+.+
T Consensus 293 ~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~-g~DalR~~l---------l~~~~~----~~d~~fs---~~~l 354 (524)
T 2x1l_A 293 PLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTF-GLDQVRYFL---------LREVPF----GQDGSYN---EDAI 354 (524)
T ss_dssp CCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHH-CHHHHHHHH---------HHHSCT----TSCEEEC---HHHH
T ss_pred CCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHc-ChHHHHHHH---------HhcCCC----CCCCCcC---HHHH
Confidence 78899999999998 9999999999999999999999 999999999 764445 8999999 3444
Q ss_pred HHHHH--HHHHHHHHhccchhhc-----ccccc-cccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q psy1860 404 WSVCL--ILKEKVLLANDAEEKL-----SFQYN-EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDN 475 (659)
Q Consensus 404 ~~~~~--~~~~l~~l~n~~~~~~-----~~~~~-~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~ 475 (659)
.+..+ +.+++ +|+..+.. .+... +........|+|++++++++++.+.++|++|+|+.|++.+++|++
T Consensus 355 ~~~~~~~l~n~l---~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~- 430 (524)
T 2x1l_A 355 IGRVNADLANEL---GNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG- 430 (524)
T ss_dssp HHHHHHCCCCCC---HHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 33321 11111 11111000 01000 001234678999999999999999999999999999999999986
Q ss_pred HHHHHHHHcccc-ccCCC---ChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 476 LTNWYVRMNRRR-LKGEG---GPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 476 ~~~~Yle~~K~~-l~~~~---~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
.+|+|++.+|+| ++.+. +.+++++++++++++++.+++||+|||||+||+||+.|+.
T Consensus 431 ~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~ 491 (524)
T 2x1l_A 431 AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQ 491 (524)
T ss_dssp HHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 589999999985 44432 2234567788999999999999999999999999999963
No 13
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.7e-56 Score=495.20 Aligned_cols=385 Identities=19% Similarity=0.220 Sum_probs=287.8
Q ss_pred ecCCCCChhhHHHHHhCCCCCCCCccccccCCCc-cccC-------CCccc-cCc--ccccCchHHHHHHHhcCCEeEee
Q psy1860 63 HQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASG-CFTA-------PVSHF-LGL--YVKDADKPIIKHLKEQSRLVSAG 131 (659)
Q Consensus 63 ~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G-~~~~-------~~~~~-~g~--~v~~a~~~ii~~L~~~g~l~~~~ 131 (659)
..+..||......+++.|+ +....++... .+.+ ..+.| .=. ...++...+++.|.++|+++..+
T Consensus 47 ~g~D~~G~~i~~~a~~~g~-----~~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~ 121 (500)
T 2d5b_A 47 TGTDEHGETVYRAAQAAGE-----DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGE 121 (500)
T ss_dssp EEEECCSHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCchHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecc
Confidence 3456788888888888776 3222222210 0100 00111 001 13456688999999999998742
Q ss_pred cccc---------------cCCccccCCCcEEEcccCceeeechHhHHHHHHhcCC--ceEecCcccchhhhhhhc-CCC
Q psy1860 132 SVKH---------------SYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD--TYWVPEFVKEKRFGNWLR-EAR 193 (659)
Q Consensus 132 ~~~h---------------~~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~--~~~~P~~~~~~~~~~~l~-~l~ 193 (659)
+.. ..++|+|||+|++++.++||||+++++++++++++++ ..+.|+.. ++++.+|++ +++
T Consensus 122 -~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~~l~~~l~ 199 (500)
T 2d5b_A 122 -YEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGY-RNEVLAMLAEPIG 199 (500)
T ss_dssp -EEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHH-HHHHHHHHTSCCC
T ss_pred -eEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHH-HHHHHHHHhcCCC
Confidence 111 1267999999999999999999999999999999875 35679887 478899996 789
Q ss_pred ceEeee--cc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccccCCCCCCCCCccccccccceec
Q psy1860 194 DWAISR--NR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWF 270 (659)
Q Consensus 194 Dw~ISR--qr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWf 270 (659)
|||||| || +||+|||. + +++|+||||
T Consensus 200 Dw~iSRp~~~~~WG~piP~----~-----------------------------------------------~~~v~~vWf 228 (500)
T 2d5b_A 200 DLSISRPKSRVPWGIPLPW----D-----------------------------------------------ENHVTFVWF 228 (500)
T ss_dssp CEECEEETTTCCSSCEETT----E-----------------------------------------------EEEEECHHH
T ss_pred CeecccccccccCccccCC----C-----------------------------------------------CCCeeEEcc
Confidence 999999 77 79999993 1 124788999
Q ss_pred cCCCCccccccCCCCCcccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCC
Q psy1860 271 ESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKR 348 (659)
Q Consensus 271 dS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~G 348 (659)
||+++|++.++|+.+ . +|+++||+|+|++|+||++|| ++++++.++ |..||+++++||||++++|+|||||+|
T Consensus 229 ds~~~y~~~~g~~~~-~-~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~---g~~~~~~v~~~G~v~~~~G~KMSKS~G 303 (500)
T 2d5b_A 229 DALLNYVSALDYPEG-E-AYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA---GIPMYRHLNVGGFLLGPDGRKMSKTLG 303 (500)
T ss_dssp HHHTHHHHTTTTTTC-H-HHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH---TCCCCSEEEEECCEECTTSSCCCTTTT
T ss_pred ccchhhHHHcCCCCC-c-hHHHcCCCeEEEEeechhhhHHHHHHHHHHHc---CCCCCcEEEECceEEeCCCCcccccCC
Confidence 999999999999853 2 378889999999999999999 677777665 347889999999999989999999999
Q ss_pred CCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHH-HHHhccchhhccc-
Q psy1860 349 NYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEK-VLLANDAEEKLSF- 426 (659)
Q Consensus 349 N~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l-~~l~n~~~~~~~~- 426 (659)
|+|+|.+++++| |+|++|||+ ++.+++ ++|.+|+ . +.+.+..+ +++ ..++|+..+...+
T Consensus 304 N~i~p~d~i~~~-g~DalR~~l---------l~~~~~----~~d~~fs--~-~~~~~~~~--~~l~~~l~n~~~r~~~~~ 364 (500)
T 2d5b_A 304 NVVDPFALLEKY-GRDALRYYL---------LREIPY----GQDTPVS--E-EALRTRYE--ADLADDLGNLVQRTRAML 364 (500)
T ss_dssp CCCCHHHHHHHH-CHHHHHHHH---------HHHSCT----TSCEECC--H-HHHHHHHH--HHCCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHhc-CcHHHHHHH---------HhcCCc----ccCCCCC--H-HHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999 664445 8999999 3 33333221 111 1122221110000
Q ss_pred -c-cccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHH
Q psy1860 427 -Q-YNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSL 504 (659)
Q Consensus 427 -~-~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l 504 (659)
. ....... ..++|++++++++++.+.++|++|+|+.|++.+++|++ .+++|++.+|+|....++.+++++++.++
T Consensus 365 ~~~~~~~~~~--~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~-~~n~y~~~~k~w~~~~~~~~~~~~~~~~l 441 (500)
T 2d5b_A 365 FRFAEGRIPE--PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVK-ALNRYINEKKPWELFKKEPEEARAVLYRV 441 (500)
T ss_dssp HHHSTTBCCC--CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHCHHHHHHHHHHH
T ss_pred HHhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHHhcCchhhccCcHHHHHHHHHHH
Confidence 0 0000111 11478999999999999999999999999999999985 58999999998743322223456788899
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 505 TKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 505 ~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
+++++.+++||+|||||+||+||+.|+.
T Consensus 442 ~~~l~~~~~ll~P~~P~~aeei~~~l~~ 469 (500)
T 2d5b_A 442 VEGLRIASILLTPAMPDKMAELRRALGL 469 (500)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHcCC
Confidence 9999999999999999999999999963
No 14
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1.8e-55 Score=493.46 Aligned_cols=342 Identities=18% Similarity=0.241 Sum_probs=268.5
Q ss_pred cCchHHHHHHHhcCCEeEeec-------------------------------------------ccccCCccccCCCcEE
Q psy1860 112 DADKPIIKHLKEQSRLVSAGS-------------------------------------------VKHSYPFCWRSDTPLI 148 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~-------------------------------------------~~h~~p~~~r~g~~v~ 148 (659)
+..+.+++.|.++|+++.... .+...|+|+|||++++
T Consensus 117 ~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~ 196 (560)
T 3h99_A 117 QLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPV 196 (560)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCE
T ss_pred HHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCce
Confidence 455788999999999985321 0112378999999999
Q ss_pred EcccCceeeechHhHHHHHHhcCCceEecCcccchhhhhhhc-CCCceEeeecc-CCCccccEEEeCCCCeEEEeccHHH
Q psy1860 149 YKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLR-EARDWAISRNR-YWGTPIPLWVSDDGEEIVCVGSIAE 226 (659)
Q Consensus 149 ~~~~~qwFi~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~~l~-~l~Dw~ISRqr-~WG~piP~~~~~~~~~~i~~~~~~~ 226 (659)
++.++||||+++++++++++++++.. +|+.. ++.+.+|++ +++|||||||+ +||+|||. +++
T Consensus 197 ~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~-~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~----~~~---------- 260 (560)
T 3h99_A 197 MRDSEHFFFDLPSFSEMLQAWTRSGA-LQEQV-ANKMQEWFESGLQQWDISRDAPYFGFEIPN----APG---------- 260 (560)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHTSC-SCHHH-HHHHHHHHHHCCCCEECEEESSCSSCBCTT----CTT----------
T ss_pred EEecceEEEEHHHHHHHHHHHHHhCC-CCHHH-HHHHHHHHhcCCCCCCccccCCcCCeeCCC----CCC----------
Confidence 99999999999999999999988755 45555 588999998 89999999999 99999993 222
Q ss_pred HHHhhCCccccccccccccccccCCCCCCCCCccccccccceeccCCCCccccc-cCCCCC--cccccccCCcc-----e
Q psy1860 227 LHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQL-HFPFDN--RRDFDDRFPAD-----F 298 (659)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~-~~~~~~--~~~~~~~~p~d-----~ 298 (659)
.|+|||||++++|++.+ +|+.+. ..+|+.|||.| +
T Consensus 261 -------------------------------------~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~ 303 (560)
T 3h99_A 261 -------------------------------------KYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELY 303 (560)
T ss_dssp -------------------------------------EEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEE
T ss_pred -------------------------------------ceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeE
Confidence 46779999988887766 454221 25788999999 9
Q ss_pred EeeccccchhH--HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhccccccc
Q psy1860 299 IAEGIDQTRGW--FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMS 376 (659)
Q Consensus 299 ~~~G~D~~~~w--~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~ms 376 (659)
++.|+||++|| ||+++++++++ ..| ++|++||||++ +|+|||||+||||+|.+++++| |+|++|||+
T Consensus 304 ~~~G~D~~~fh~~~~~a~l~~~g~--~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~-GaDalR~~l------ 372 (560)
T 3h99_A 304 HFIGKDIVYFLSLFWPAMLEGSNF--RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHF-DADSLRYYY------ 372 (560)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHTTB--CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHS-CHHHHHHHH------
T ss_pred EEeccccchhHHHHHHHHHHhCCC--CCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHc-CcHHHHHHH------
Confidence 99999999998 89999999876 556 99999999998 9999999999999999999999 999999999
Q ss_pred ccccCCCCCccccC-cccccccCchhhhHHH-HHHHHHHHHHhccchhhcccc---cccccCCCChhhHHHHHHHHHHHH
Q psy1860 377 KSKKNYPDPMEVRG-RLCPVHVWEPVHVWSV-CLILKEKVLLANDAEEKLSFQ---YNEAEGSTNIMDAWIISFSESLIE 451 (659)
Q Consensus 377 k~~~~~~~~~~~~~-~d~~f~lw~~~~~~~~-~~~~~~l~~l~n~~~~~~~~~---~~~~~~~~~~~d~~il~~l~~~~~ 451 (659)
++.+++ + +|++|+ .+..+... ++++++ ++|+..+...+. +.. .......|+|++++++++++
T Consensus 373 ---l~~~~~----~~~d~~f~--~~~~~~~~~~~l~~~---l~n~~~R~~~~~~~~~~~-~~~~~~~d~~ll~~l~~~~~ 439 (560)
T 3h99_A 373 ---TAKLSS----RIDDIDLN--LEDFVQRVNADIVNK---VVNLASRNAGFINKRFDG-VLASELADPQLYKTFTDAAE 439 (560)
T ss_dssp ---HHHCCS----SCCCEEEC--HHHHHHHHHHHCCCC---CTHHHHTTHHHHHHHSTT-BCCSSCSCHHHHHHHHHTHH
T ss_pred ---HHhCCC----CCCCCCcC--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHHHHHHH
Confidence 655333 5 899999 31111111 122222 233222211110 000 11123579999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCC--CChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy1860 452 FVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGE--GGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQN 529 (659)
Q Consensus 452 ~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~--~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~ 529 (659)
.+.++|++|+|+.|++.+++|+ +++|+|++..|+|.... ...+++..++.+++++++.+++||+|||||+||+||++
T Consensus 440 ~v~~~~e~~~~~~a~~~l~~l~-~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~ 518 (560)
T 3h99_A 440 VIGEAWESREFGKAVREIMALA-DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAF 518 (560)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH-HHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9999999999999999999997 66999999999874332 23445667788899999999999999999999999999
Q ss_pred hh
Q psy1860 530 LR 531 (659)
Q Consensus 530 L~ 531 (659)
|+
T Consensus 519 L~ 520 (560)
T 3h99_A 519 LN 520 (560)
T ss_dssp HT
T ss_pred cC
Confidence 96
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.4e-53 Score=472.47 Aligned_cols=335 Identities=18% Similarity=0.261 Sum_probs=248.9
Q ss_pred ccCchHHHHHHHhcCCEeEeecccccC----------------CccccCCCcEEEcccCceeeechHhHHHHHHhcCC--
Q psy1860 111 KDADKPIIKHLKEQSRLVSAGSVKHSY----------------PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD-- 172 (659)
Q Consensus 111 ~~a~~~ii~~L~~~g~l~~~~~~~h~~----------------p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~-- 172 (659)
.+....+++.|.++|+++..+ +...| ++|+|||+|++++.++||||+++++++++++++++
T Consensus 103 ~~~~~~~~~~L~~~G~iY~~~-~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~ 181 (497)
T 2csx_A 103 VKFVQKVFEECYKRGDIYLGE-YEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNP 181 (497)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-C---------------------------------CCEEEEECTTSSHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCEEecc-eeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCC
Confidence 356678999999999998742 22211 78999999999999999999999999999999864
Q ss_pred ceEecCcccchhhhhhhc-CCCceEeee--cc-CCCccccEEEeCCCCeEEEeccHHHHHHhhCCccccccccccccccc
Q psy1860 173 TYWVPEFVKEKRFGNWLR-EARDWAISR--NR-YWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVT 248 (659)
Q Consensus 173 ~~~~P~~~~~~~~~~~l~-~l~Dw~ISR--qr-~WG~piP~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 248 (659)
..+.|+.. ++.+.+|++ +++|||||| |+ +||+|+|. +
T Consensus 182 ~~~~p~~~-~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~----~---------------------------------- 222 (497)
T 2csx_A 182 EFIQPDYR-RNEIISFVKQGLKDLSVTRPRSRVKWGIPVPF----D---------------------------------- 222 (497)
T ss_dssp TSBCSHHH-HHHHHHHHHHCCCCEECEEETTTCCSSEEETT----E----------------------------------
T ss_pred CeeCcHHH-HHHHHHHHhcCCccccccccCCCCCCceecCC----C----------------------------------
Confidence 35678776 478889997 799999999 77 79999993 1
Q ss_pred cCCCCCCCCCccccccccceeccCCCCccccccCCCCCcccccccCCcceEeeccccchhH--HHHHHHHHhhhcCCCCC
Q psy1860 249 IPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW--FYTLLVISTALFKQAPF 326 (659)
Q Consensus 249 ~~~~~~g~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~w--~~~~ll~~~~~~~~~p~ 326 (659)
..+++||||||++.|.+++ + + ..+ .+||+|+|++|+||++|| +|++++.++ |..||
T Consensus 223 -------------~~~~i~vW~ds~~~~~s~~--~-~-~~~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~---g~~~~ 280 (497)
T 2csx_A 223 -------------PEHTIYVWFDALFNYISAL--E-D-KVE--IYWPADLHLVGKDILRFHTVYWPAFLMSL---GYELP 280 (497)
T ss_dssp -------------EEEEECSHHHHHTHHHHTT--T-T-THH--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH---TCCCC
T ss_pred -------------CCceEEEecccchhhcccC--C-C-cch--hhCCceEEEeecchhHhHHHHHHHHHHHc---CCCCC
Confidence 1246779999998877765 2 1 111 567999999999999998 677777665 45788
Q ss_pred CeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHH
Q psy1860 327 RNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSV 406 (659)
Q Consensus 327 k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~ 406 (659)
+++++||||++ +|+|||||+||+|+|.+++++| |+|++|||+ ++.+++ ++|.+|+ . +.+.+.
T Consensus 281 ~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~-g~DalR~~l---------l~~~~~----~~d~~fs--~-~~l~~~ 342 (497)
T 2csx_A 281 KKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEY-GLDEVRYFL---------LREVPF----GQDGDFS--K-KAILNR 342 (497)
T ss_dssp SCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHH-CHHHHHHHH---------HHSSCT----TSCEECC--H-HHHHHH
T ss_pred cEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHC-CcHHHHHHH---------HhcCCc----ccCCCCC--h-HHHHHH
Confidence 99999999998 9999999999999999999999 999999999 765455 8999999 3 333332
Q ss_pred HHHHHH-H-HHHhccchhhc----ccccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Q psy1860 407 CLILKE-K-VLLANDAEEKL----SFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWY 480 (659)
Q Consensus 407 ~~~~~~-l-~~l~n~~~~~~----~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Y 480 (659)
.+. + +.++|+..+.. ... .... . ...|+|++++++++++.+.++|++|+|+.|++.+++|++ .+++|
T Consensus 343 ---~~~~l~~~l~n~~~R~~~~~~~~~-~~~~-~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~-~~n~y 415 (497)
T 2csx_A 343 ---INGELANEIGNLYSRVVNMAHKFL-GGEV-S-GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTS-YLNKY 415 (497)
T ss_dssp ---HHHTCCCCCHHHHHHHHHHHHHHS-TTCB-C-CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhc-CCCC-C-chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHH
Confidence 111 1 11111111100 000 0001 1 346899999999999999999999999999999999985 58999
Q ss_pred HHHccccccCC-CChHhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhh
Q psy1860 481 VRMNRRRLKGE-GGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRH 532 (659)
Q Consensus 481 le~~K~~l~~~-~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 532 (659)
++..|+|.... .+.+++++++.+++++++.+++||+|||||+||+||+.|+.
T Consensus 416 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~ 468 (497)
T 2csx_A 416 VDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGE 468 (497)
T ss_dssp HHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCC
Confidence 99999874322 33345667889999999999999999999999999999963
No 16
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=99.94 E-value=2.4e-27 Score=225.38 Aligned_cols=124 Identities=32% Similarity=0.596 Sum_probs=109.2
Q ss_pred cchHHHHhhcCCceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCC
Q psy1860 2 QSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGV 81 (659)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l 81 (659)
+++++++.++ +++++.+++|++|.|.+|.||++.+. ++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 63 ~~~~~~~~~~--~~~~~~~~~G~~l~g~~~~~P~~~~~--~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L 138 (186)
T 1wny_A 63 EGLGRKLLGE--GTPVLKTFPGKALEGLPYTPPYPQAL--EKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL 138 (186)
T ss_dssp HHHHHHHHCT--TSCEEEEEEHHHHTTCBBCCSSCCCC--SSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTC
T ss_pred HHHHHHHhhc--CcEEEEEEEcccccCcEEECCccccC--CCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCC
Confidence 4677777663 67889999999999999999995210 3579999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCccccCCCccccCcccccCchHHHHHHHhcCCEeEeeccccc
Q psy1860 82 ITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHS 136 (659)
Q Consensus 82 ~~~~~~~~~~vd~~G~~~~~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~h~ 136 (659)
++++++|++|+|++. + |.|+++++|+++|+++|+++|.+.+.++|+|+
T Consensus 139 -----~i~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 139 -----PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp -----CCCCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred -----ceEeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 899999999999987 6 99999999999999999999999999999985
No 17
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.90 E-value=3.2e-24 Score=195.26 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=92.0
Q ss_pred cCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccCCCccccCCC
Q psy1860 23 GSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPV 102 (659)
Q Consensus 23 G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~ 102 (659)
.++|+|++|.||+. ++.+||+.++||++++|||+||+|||||++||++|++||| ++++++|++|+| ++
T Consensus 44 ~~~l~g~~~~~P~~-----~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L-----~~~~~id~~G~~--~~ 111 (147)
T 1wka_A 44 YRHLLGKRARIPLT-----EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL-----KPVSVINLEGRM--EG 111 (147)
T ss_dssp TGGGTTCEEECTTS-----SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC-----CCCCSBCTTSBB--CS
T ss_pred HHHhcCCEEECCCC-----CCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCC-----CcceEECCCCEE--cC
Confidence 46899999999996 4689999999999999999999999999999999999999 899999999999 56
Q ss_pred cc----ccCcccccCchHHHHHHHhcCCEeEeecc
Q psy1860 103 SH----FLGLYVKDADKPIIKHLKEQSRLVSAGSV 133 (659)
Q Consensus 103 ~~----~~g~~v~~a~~~ii~~L~~~g~l~~~~~~ 133 (659)
++ |.|+++++|+++|+++|+++|.+.+.++|
T Consensus 112 ~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 112 ERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp TTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 66 99999999999999999999999986654
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.89 E-value=5.2e-24 Score=228.78 Aligned_cols=144 Identities=13% Similarity=-0.023 Sum_probs=105.3
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEe-ceeecCCCCccccCCCCCCCCCCCCCc-CCCchhhhhhccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIAN-GLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGLVLSSDG 372 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~h-G~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~lR~~l~~ 372 (659)
|.|+|++|+|++++|+.....++.++++..||+++++| |||+. +|+|||||+||+|+|.+++++ | |+|++|||+
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~~ll~~g~-g~D~lR~~l-- 319 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGW-DGHKMSKSRGNLVLVSQLRAQGV-DPSAIRLGL-- 319 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTC-CHHHHHHHH--
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEec-CCeEcccccCCcCCHHHHhhccC-CcchheeEE--
Confidence 89999999999999987777777777787899999999 89997 999999999999999999999 9 999999999
Q ss_pred ccccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHH
Q psy1860 373 QKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEF 452 (659)
Q Consensus 373 ~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~ 452 (659)
++ +++ .+|.+|+ .+.+....+++++++++.+.. . . . .+++++++
T Consensus 320 -------l~-~~~----~~d~~fs---~~~l~~~~~~l~~l~n~~~~~--------~--~-~----------~~~~~~~~ 363 (414)
T 3c8z_A 320 -------FS-GHY----REDRFWS---NEVLDEANARLARWRSATALP--------E--A-P----------DATDVIAR 363 (414)
T ss_dssp -------HT-SCT----TSCBCCC---HHHHHHHHHHHHHHHHHHTSS--------C--B-S----------CCHHHHHH
T ss_pred -------Ee-cCc----CCCCCcC---HHHHHHHHHHHHHHHHHHHhc--------c--c-h----------hHHHHHHH
Confidence 76 455 8999999 566677777777664432211 0 0 0 12466788
Q ss_pred HHHHH-HhcchhhHHHHHHHHHHHHHH
Q psy1860 453 VRKEM-AAYRLYTVVPRLVLFIDNLTN 478 (659)
Q Consensus 453 ~~~~~-e~~~~~~a~~~l~~f~~~~~~ 478 (659)
+.++| ++|+|+.|+..+++|++.+.+
T Consensus 364 v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 364 VRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 99999 799999999999999877543
No 19
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.88 E-value=3.4e-24 Score=207.81 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=98.0
Q ss_pred chHHHHhhcCC-ceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCC
Q psy1860 3 SRLETLFKKEE-EYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGV 81 (659)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l 81 (659)
++++++.+..+ +..++.+++|. |.|.+|.|||. ++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~~~Pl~-----~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L 158 (219)
T 3o0a_A 85 NFVEKMKKMSTRERTMEEDKEGV-FLGVYATNPAN-----GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL 158 (219)
T ss_dssp HHHHHHHTCCHHHHHSCSSCCEE-EEEEEEECTTT-----CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC
T ss_pred HHHHHHHhhccccceeEEEeeeE-EcCCEEECCCC-----CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC
Confidence 45555544211 12223789998 99999999996 4689999999999999999999999999999999999999
Q ss_pred CCCCCccccccCC-------CccccCC-----CccccCcccccCchHHHHHHHhcCCEeEeecc
Q psy1860 82 ITRDQEIVCPVDA-------SGCFTAP-----VSHFLGLYVKDADKPIIKHLKEQSRLVSAGSV 133 (659)
Q Consensus 82 ~~~~~~~~~~vd~-------~G~~~~~-----~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~ 133 (659)
++++++|+ +|.|++. +++|.||++++|+++|+++|+++|++.+...|
T Consensus 159 -----pi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 159 -----PIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp -----CCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred -----CceeeeCCccccccccccccccceEecCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 78888876 5666654 47999999999999999999999999875443
No 20
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.88 E-value=9.7e-24 Score=210.45 Aligned_cols=122 Identities=23% Similarity=0.293 Sum_probs=98.0
Q ss_pred CceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHh-------CCCCCC-
Q psy1860 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLA-------GGVITR- 84 (659)
Q Consensus 13 ~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~-------~~l~~~- 84 (659)
++++++.+++|++|+|.+|.||+.. .+.+||++++||++++|||+||+|||||++||++|++ |||..+
T Consensus 90 ~~~~~~~~~~G~~L~G~~~~~Pl~~----~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~ 165 (261)
T 2wfg_A 90 GYYKPLFTINGKTLIGSRIDAPYAV----NKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDW 165 (261)
T ss_dssp TCCCCSEEEEHHHHTTCEEECTTCS----SCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGG
T ss_pred cccEEEEEEecccccCCEEECCCCC----CceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCcccc
Confidence 4578889999999999999999962 2469999999999999999999999999999999999 993110
Q ss_pred -CCccccccCC--Cc---------------------------------cccCC--CccccCcccccCchHHHHHHHhcCC
Q psy1860 85 -DQEIVCPVDA--SG---------------------------------CFTAP--VSHFLGLYVKDADKPIIKHLKEQSR 126 (659)
Q Consensus 85 -~~~~~~~vd~--~G---------------------------------~~~~~--~~~~~g~~v~~a~~~ii~~L~~~g~ 126 (659)
+.+++++||. +| +|+.. +++|+|+++++|++.|+++|+++|.
T Consensus 166 ~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~ 245 (261)
T 2wfg_A 166 VQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGL 245 (261)
T ss_dssp CCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTS
T ss_pred ccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCC
Confidence 0167778866 33 33322 6789999999999999999999999
Q ss_pred EeEeecccccCC
Q psy1860 127 LVSAGSVKHSYP 138 (659)
Q Consensus 127 l~~~~~~~h~~p 138 (659)
+.+.++++|+--
T Consensus 246 ~~~~~~~~h~~~ 257 (261)
T 2wfg_A 246 AFVYNEPELEHH 257 (261)
T ss_dssp EEEECC------
T ss_pred eeeeeeeeeccc
Confidence 999999998743
No 21
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.86 E-value=7.4e-23 Score=196.15 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=93.1
Q ss_pred ceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHHHHHhCCCCCCCCccccccC
Q psy1860 14 EYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVD 93 (659)
Q Consensus 14 ~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~~~~~~vd 93 (659)
+++++...+|.+|.|.+|.||+. ++.+||+.++||++++|||+||+|||||++||++|++||| +++++||
T Consensus 75 ~~~~~~~~k~g~l~G~~~~~P~~-----~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L-----~i~~vI~ 144 (196)
T 2ajg_A 75 EAEMATMEKKGVDTGFKAVHPLT-----GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL-----NIKPVIL 144 (196)
T ss_dssp GGGGGGSCCCEEEEEEEEECTTT-----CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTC-----CCCCCBC
T ss_pred ceEEEeeeeCCEEcCCEEECCCC-----CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCC-----CceeEEe
Confidence 34555545556999999999996 4689999999999999999999999999999999999999 7888886
Q ss_pred ---------CCccccCCC-----ccccCcccccCchHHHHHHHhcCCEeE
Q psy1860 94 ---------ASGCFTAPV-----SHFLGLYVKDADKPIIKHLKEQSRLVS 129 (659)
Q Consensus 94 ---------~~G~~~~~~-----~~~~g~~v~~a~~~ii~~L~~~g~l~~ 129 (659)
++|+|++.. ++|+|+++++|+++|+++|+++|++.+
T Consensus 145 ~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 145 AADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp CTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 477887653 789999999999999999999999865
No 22
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.84 E-value=8.8e-22 Score=195.69 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=93.1
Q ss_pred CceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHH----------HHHhCCCC
Q psy1860 13 EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYR----------VCLAGGVI 82 (659)
Q Consensus 13 ~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~----------~~~~~~l~ 82 (659)
++++++.+++|++|+|.+|.||+.. .+.+||++++||++++|||+||+|||||++||+ +|++|||+
T Consensus 87 ~~~~~~~~~~G~~l~G~~~~~Pl~~----~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~ 162 (252)
T 2wfd_A 87 GVVPVVKELMGEEILGASLSAPLTS----YKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIR 162 (252)
T ss_dssp TCCCEEEECCHHHHTTCEEECSSCS----SSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCC
T ss_pred cccEEEEEEEcccccCCEEEcCCCC----CceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCC
Confidence 5688999999999999999999962 146999999999999999999999999999999 48899985
Q ss_pred CC---CCcccccc----------------------CC-----------------CccccCCCccccCcccccCchHHHHH
Q psy1860 83 TR---DQEIVCPV----------------------DA-----------------SGCFTAPVSHFLGLYVKDADKPIIKH 120 (659)
Q Consensus 83 ~~---~~~~~~~v----------------------d~-----------------~G~~~~~~~~~~g~~v~~a~~~ii~~ 120 (659)
.+ +.+++.++ ++ +|+|+ +++|+|+++++|+++|+++
T Consensus 163 ~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~ 240 (252)
T 2wfd_A 163 DDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKK 240 (252)
T ss_dssp GGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHH
T ss_pred chhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHH
Confidence 20 00122222 11 58877 6899999999999999999
Q ss_pred HHhcCCEeEee
Q psy1860 121 LKEQSRLVSAG 131 (659)
Q Consensus 121 L~~~g~l~~~~ 131 (659)
|+++|.+...+
T Consensus 241 L~~~g~~~~~~ 251 (252)
T 2wfd_A 241 MIDAGDALIYM 251 (252)
T ss_dssp HHHTTSEEEEE
T ss_pred HHHCCCCcccc
Confidence 99999987754
No 23
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.83 E-value=3.6e-21 Score=208.76 Aligned_cols=150 Identities=14% Similarity=0.009 Sum_probs=116.3
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEe-ceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIAN-GLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~h-G~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
|.|+|++|+|+++||....+.++.+++|. ||.++++| |||+. +|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~~~-g~dalR~~l--- 293 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKYY-DAETVRYFL--- 293 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHTTS-CHHHHHHHH---
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEEE-CCeEccccCCCccChhHHhhhC-CHHHHHHHH---
Confidence 68999999999999976666666666665 66555555 99998 9999999999999999999999 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFV 453 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~ 453 (659)
++. ++ .+|.+|+ .+.+..+.+.+++++.+.+.... . .. . | .++.+...+
T Consensus 294 ------l~~-~~----~~~~~fs---~~~l~~~~~~l~rl~n~~~~~~~----~----~~---~-d-----~l~~~~~~~ 342 (461)
T 1li5_A 294 ------MSG-HY----RSQLNYS---EENLKQARAALERLYTALRGTDK----T----VA---P-A-----GGEAFEARF 342 (461)
T ss_dssp ------HSS-CT----TSCEEEC---HHHHHHHHHHHHHHHHHHTTCCT----T----SC---C-C-----SCHHHHHHH
T ss_pred ------HcC-Cc----CCCCCCC---HHHHHHHHHHHHHHHHHHHHhhc----C----CC---H-H-----HHHHHHHHH
Confidence 763 45 8999999 46666777777776433221110 0 00 1 2 356677889
Q ss_pred HHHH-HhcchhhHHHHHHHHHHHHHHHHHH
Q psy1860 454 RKEM-AAYRLYTVVPRLVLFIDNLTNWYVR 482 (659)
Q Consensus 454 ~~~~-e~~~~~~a~~~l~~f~~~~~~~Yle 482 (659)
.++| ++|+++.|+..+++|++. .|.|++
T Consensus 343 ~~am~dd~n~~~Al~~l~~l~~~-~N~~~~ 371 (461)
T 1li5_A 343 IEAMDDDFNTPEAYSVLFDMARE-VNRLKA 371 (461)
T ss_dssp HHHHHBTSCHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH-HHHHHh
Confidence 9999 899999999999999876 577775
No 24
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.80 E-value=7.2e-20 Score=181.13 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=98.0
Q ss_pred cchHHHHhhcC-------CceEEEEeeecCCccCCccccCcccccccCceeEEEeCCCcCCCCCCceeecCCCCChhhHH
Q psy1860 2 QSRLETLFKKE-------EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYR 74 (659)
Q Consensus 2 ~~~~~~~~~~~-------~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~ 74 (659)
+++++.+..+. ++++++.+++|++|+|.+|.|||.. .+.+||++++||++++|||+||+|||||++||.
T Consensus 121 e~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~----~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~ 196 (311)
T 3pz6_A 121 EHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSP----YEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYA 196 (311)
T ss_dssp HHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCS----SSCEEEEECTTCCTTSTTSEEEECTTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCC----CCeeEEEecCcCccCCCcceEEeCCCCCHHHHH
Confidence 35666654432 4689999999999999999999962 137999999999999999999999999999999
Q ss_pred HHHh-----------CCCC-------CCCCcccc--------------------ccCC----------------CccccC
Q psy1860 75 VCLA-----------GGVI-------TRDQEIVC--------------------PVDA----------------SGCFTA 100 (659)
Q Consensus 75 ~~~~-----------~~l~-------~~~~~~~~--------------------~vd~----------------~G~~~~ 100 (659)
++++ |||. .+..+++. ..|. +|.+.
T Consensus 197 ~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~- 275 (311)
T 3pz6_A 197 CYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK- 275 (311)
T ss_dssp HHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC-
T ss_pred HHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe-
Confidence 6665 7761 11112221 1120 46665
Q ss_pred CCccccCcccccCchHHHHHHHhcCCEeEeeccc
Q psy1860 101 PVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVK 134 (659)
Q Consensus 101 ~~~~~~g~~v~~a~~~ii~~L~~~g~l~~~~~~~ 134 (659)
.|+|.|++|.+|+++|+++|.++|..+..++.+
T Consensus 276 -~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyEpe 308 (311)
T 3pz6_A 276 -MGPFAGQSVKDCKQSCRDLLVQNNQCIVYSEPE 308 (311)
T ss_dssp -SSTTTTSBHHHHHHHHHHHHHHTTCEEEEECC-
T ss_pred -eeccCCeEHHHHHHHHHHHHHHCCCceEEcccc
Confidence 589999999999999999999999998866544
No 25
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.78 E-value=9.4e-20 Score=196.01 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=108.9
Q ss_pred cccC--CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEe-ceeecCCCCccccCCCCCCCCCCCCCc-CCCchhh
Q psy1860 291 DDRF--PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIAN-GLVLAQDGQKMSKSKRNYPDPMEPPFK-NLIANGL 366 (659)
Q Consensus 291 ~~~~--p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~h-G~v~~~~G~KMSKS~GN~i~p~~~i~~-y~gaD~l 366 (659)
..+| |.|+|++|+|++++|....+.++.+++++ ||.++++| |||+. +|+|||||+||+|+|.+++++ | |+|++
T Consensus 247 ~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~~-~G~KMSKSlGN~it~~dll~~gy-g~d~l 323 (501)
T 3sp1_A 247 LEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLIM-DYNKMSKSRGNFITVKDLEDQNF-SPLDF 323 (501)
T ss_dssp HHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEEC-C----------CCCHHHHHHTTC-CHHHH
T ss_pred HHHcCCCceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEee-CCeEccccCCCcCCHHHHHhcCC-CHHHH
Confidence 4556 46999999999999998889999888875 88999999 99986 999999999999999999999 9 99999
Q ss_pred hhhcccccccccccCCCCCccccCcccccccCchhhhHHHHHH----HHHHHHHh-ccchhhcccccccccCCCChhhHH
Q psy1860 367 VLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLI----LKEKVLLA-NDAEEKLSFQYNEAEGSTNIMDAW 441 (659)
Q Consensus 367 R~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~----~~~l~~l~-n~~~~~~~~~~~~~~~~~~~~d~~ 441 (659)
|||+ ++. ++ .+|++|+ .+.++.+++. +++++... ++......-.... .....
T Consensus 324 R~~l---------ls~-~y----r~~l~fs---~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~-~~~~~----- 380 (501)
T 3sp1_A 324 RYLC---------LTS-HY----RNQLKFS---LDNLQASKIARENLINKLSYFYESLDPVDLNTLNKD-LKNFG----- 380 (501)
T ss_dssp HHHH---------HTS-CT----TSCEECC---HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSC-TTSCS-----
T ss_pred HHHH---------Hhc-cC----CCCCccC---HHHHHHHHHhhHHHHHHHHHHHHHHHhhhccccccc-ccchh-----
Confidence 9999 765 45 8999999 6778888777 77774332 2211000000000 00000
Q ss_pred HHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHH
Q psy1860 442 IISFSESLIEFVRKEMA-AYRLYTVVPRLVLFIDN 475 (659)
Q Consensus 442 il~~l~~~~~~~~~~~e-~~~~~~a~~~l~~f~~~ 475 (659)
...+..+...+.++|+ ++++..|+..+++++..
T Consensus 381 -~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~ 414 (501)
T 3sp1_A 381 -FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKS 414 (501)
T ss_dssp -SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHC
T ss_pred -hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 1224456677888997 89999999999998754
No 26
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.75 E-value=1.1e-18 Score=187.05 Aligned_cols=149 Identities=17% Similarity=0.069 Sum_probs=120.6
Q ss_pred CcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhccccc
Q psy1860 295 PADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQK 374 (659)
Q Consensus 295 p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~~ 374 (659)
+.|+|.+|.|++++|+..++.++.+++++ ||.++++|+.+++.+|+|||||+||+|+|.+++++| |+|++|||+
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~-g~dalR~~l---- 296 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKES-DVEVLRYFL---- 296 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHS-CHHHHHHHH----
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhc-ChHHhhhhh----
Confidence 68999999999999999999999999987 999999997777789999999999999999999999 999999999
Q ss_pred ccccccCCCCCccccCcccccccCchhhhHHHHHHHHHHHHHhccchhhcccccccccCCCChhhHHHHHHHHHHHHHHH
Q psy1860 375 MSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVR 454 (659)
Q Consensus 375 msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~ 454 (659)
++. ++ .++++|+ .+.++.+++++++++........ . . .+ .+..+...+.
T Consensus 297 -----ls~-~y----r~~l~fs---~~~l~~a~~~l~rl~~~~~~~~~---------~---~-~~-----~~~~~~~~~~ 345 (462)
T 3tqo_A 297 -----LSG-HY----RNPLSYS---KENLENGRLALERFYLALRGLPV---------V---N-HE-----KTSSYTDRFY 345 (462)
T ss_dssp -----HHS-CT----TSCEEEC---HHHHHHHHHHHHHHHHHHTTCCC------------------------CHHHHHHH
T ss_pred -----ccC-CC----CCCcCcC---HHHHHHHHHHHHHHHHHHHHhhh---------c---c-ch-----hHHHHHHHHH
Confidence 654 44 7899999 67888888888888544322110 0 0 00 1234567788
Q ss_pred HHHH-hcchhhHHHHHHHHHHHHHHHHH
Q psy1860 455 KEMA-AYRLYTVVPRLVLFIDNLTNWYV 481 (659)
Q Consensus 455 ~~~e-~~~~~~a~~~l~~f~~~~~~~Yl 481 (659)
++|+ ++++..|+..+++++... |-++
T Consensus 346 ~a~~dD~nt~~a~~~l~~~~~~~-n~~~ 372 (462)
T 3tqo_A 346 EAMDDDFNTPIAFALLFEMVREI-NRFR 372 (462)
T ss_dssp HHHTBTCCHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHhccChHHHHHHHHHHHHHH-hhhh
Confidence 8897 899999999999998663 4344
No 27
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.62 E-value=1.7e-15 Score=163.20 Aligned_cols=198 Identities=13% Similarity=0.017 Sum_probs=125.0
Q ss_pred eEeeccccchhHHHHHHHHHhhhcCCCCCC-eEEEecee-ecCCCC--ccccCCCCCCCCCCCCCcCCCchhhhhhcccc
Q psy1860 298 FIAEGIDQTRGWFYTLLVISTALFKQAPFR-NLIANGLV-LAQDGQ--KMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQ 373 (659)
Q Consensus 298 ~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k-~v~~hG~v-~~~~G~--KMSKS~GN~i~p~~~i~~y~gaD~lR~~l~~~ 373 (659)
+|+.|.||+ +||.. ++..+...|..|.+ .++.|||| ++++|+ |||||+||+|+|.++++++ |+|++|||+
T Consensus 239 Iyv~G~dq~-~~f~~-l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~-g~dalRy~~--- 312 (464)
T 3fnr_A 239 INIWGADHH-GYIPR-MKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEI-GSDALRYIF--- 312 (464)
T ss_dssp EEEEEGGGG-GGHHH-HHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHH-CHHHHHHHT---
T ss_pred EEEecCcHH-HHHHH-HHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhc-cHHHHHHHH---
Confidence 789999998 68776 34444444555555 77899999 666775 9999999999999999999 999999999
Q ss_pred cccccccCCCCCccccCcccccccCchhhhHHHHH-----H----HHHHH-HHhccchhhccccccc-ccCCCChhhHHH
Q psy1860 374 KMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCL-----I----LKEKV-LLANDAEEKLSFQYNE-AEGSTNIMDAWI 442 (659)
Q Consensus 374 ~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~~~-----~----~~~l~-~l~n~~~~~~~~~~~~-~~~~~~~~d~~i 442 (659)
++. ++ .+|.+|+ |+ .... ..+ + ..++. ++.+.... .+.... ....+...|+++
T Consensus 313 ------l~~-~~----~~d~~Fd-~~-~~~~-~~n~npv~YlqYa~aRi~silrk~~~~--~~~~~~~~~~~L~~~e~~L 376 (464)
T 3fnr_A 313 ------LSK-KC----DTHLEFD-IS-DLQK-EDSSNPVYYINYAHARIHQVFAKAGKK--IDDVMKADLQSLNQDGVNL 376 (464)
T ss_dssp ------TSS-CT----TSCEEEE-GG-GGGC-CSTTSHHHHHHHHHHHHHHHHHHTTCC--TTTSTTCCCTTCCHHHHHH
T ss_pred ------Hhc-CC----CCCCccC-HH-HHHH-HhCCCHHHHHHHHHHHHHHHHHHhhcc--CCCccccChhhCChHHHHH
Confidence 655 33 7888888 32 2211 111 1 12221 11111000 111110 122344459999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCChHhHHHHHHHHHHHHHHHHHHhccchh
Q psy1860 443 ISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTP 520 (659)
Q Consensus 443 l~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P 520 (659)
+.++.++.+.+.+++++++++.+++.+++|...+++||-+. +.+..+......+-++.... +|...+.||.-=.|
T Consensus 377 l~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~--~vl~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 377 LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNEN--KVVGSANENDLLKLFSLVAL-SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHC--CCTTSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--cCCCCCHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Confidence 99999999999999999999999999999998888888652 22222211111122222222 66666666654444
No 28
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.11 E-value=4.1e-11 Score=134.15 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=101.0
Q ss_pred eEEEeceeecCCCCccccCCCCCCCCCCCCCc-------------------------CCCchhhhhhcccccccccccCC
Q psy1860 328 NLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK-------------------------NLIANGLVLSSDGQKMSKSKKNY 382 (659)
Q Consensus 328 ~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~-------------------------y~gaD~lR~~l~~~~msk~~~~~ 382 (659)
.++.||||+. +|+|||||+||+|+|.+++++ + |.|++||++ ++.
T Consensus 381 ~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~v-g~~aiRyf~---------L~~ 449 (592)
T 1iq0_A 381 HHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMV-ALGAIRFSM---------VKT 449 (592)
T ss_dssp EEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHH-HHHHHHHHH---------HHS
T ss_pred EEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhh-cHHHHHHHH---------Hhc
Confidence 4678899997 899999999999999999999 9 999999999 654
Q ss_pred CCCccccCcccccccCchhhhHHHHH----H----HHHHHH-HhccchhhcccccccccCCCChhhHHHHHHHHHHHHHH
Q psy1860 383 PDPMEVRGRLCPVHVWEPVHVWSVCL----I----LKEKVL-LANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFV 453 (659)
Q Consensus 383 ~~~~~~~~~d~~f~lw~~~~~~~~~~----~----~~~l~~-l~n~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~ 453 (659)
.+ .+|.+|+ |+ .. ..... . ..++.. +.+....+ . +........+..++..+..+.+.+
T Consensus 450 -~~----~~~~~Fd-~d-~~-~~~~~~~~~ylqya~aR~~sil~k~~~~~--~---~~~~l~~~~e~~L~~~l~~~~~~v 516 (592)
T 1iq0_A 450 -EP----KKQIDFR-YQ-EA-LSFEGDTGPYVQYAHARAHSILRKAGEWG--A---PDLSQATPYERALALDLLDFEEAV 516 (592)
T ss_dssp -CT----TSCEEEC-HH-HH-HCSSSSSHHHHHHHHHHHHHHHHHHCCCC--C---CCGGGCCHHHHHHHHHHTTHHHHH
T ss_pred -CC----CCCCeec-HH-HH-HHHhccchHHHHHHHHHHHHHHHhhcccC--C---CccCCCCHHHHHHHHHHHHHHHHH
Confidence 23 7888998 32 21 11111 1 111111 11100000 0 001112345677888888999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHccc-----cccCCCCh--HhHHHHHHHHHHHHHHHHHHhcc
Q psy1860 454 RKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRR-----RLKGEGGP--ADCKVALNSLTKVLFTMVRVMAP 517 (659)
Q Consensus 454 ~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~-----~l~~~~~~--~~~~~~~~~l~~~l~~~~~lL~P 517 (659)
.+++++++++.++..++++...+..+| +..++ +...++.. ..+.........+|...+.+|.-
T Consensus 517 ~~a~~~~~p~~~~~yl~~La~~fn~fy-~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi 586 (592)
T 1iq0_A 517 LEAAEERTPHVLAQYLLDLAASWNAYY-NARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586 (592)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHH-HCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHH-HhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987766655 44432 33222221 11222234455666666666653
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.04 E-value=1.1e-09 Score=123.06 Aligned_cols=198 Identities=13% Similarity=0.019 Sum_probs=120.2
Q ss_pred eEeeccccchhHHHHHHHHHhhhcCCCC---CCeEEEeceeecCCCCccccCCC--CCCCCCCCCCc-------------
Q psy1860 298 FIAEGIDQTRGWFYTLLVISTALFKQAP---FRNLIANGLVLAQDGQKMSKSKR--NYPDPMEPPFK------------- 359 (659)
Q Consensus 298 ~~~~G~D~~~~w~~~~ll~~~~~~~~~p---~k~v~~hG~v~~~~G~KMSKS~G--N~i~p~~~i~~------------- 359 (659)
+||.|.||. +||..+.....++ |..+ .-.++.||||+. +|+|||||+| |+|++.|++++
T Consensus 380 IyV~g~~q~-~~~~~l~~~l~~l-G~~~~~~~~~h~~~g~V~~-~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~ 456 (629)
T 2zue_A 380 INVIGAEQK-HPQLAIKYALQLL-GFEDAAANLYHLAYEHVER-PEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN 456 (629)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHT-TCHHHHHTEEEEEECCEEB-TTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCcHh-hHHHHHHHHHHHc-CCCCCCCeEEEEEeeeEEc-CCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcC
Confidence 778887774 5554432222222 2222 124788999997 8999999999 99999999999
Q ss_pred --------------CCCchhhhhhcccccccccccCCCCCccccCcccccccCchhhhH-------HHHHHHHHHH-HHh
Q psy1860 360 --------------NLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVW-------SVCLILKEKV-LLA 417 (659)
Q Consensus 360 --------------y~gaD~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~-------~~~~~~~~l~-~l~ 417 (659)
+ |.|++||++ ++. .+ .+|.+|+ |+ ..++ -+.-...++. ++.
T Consensus 457 ~~~~~~~~~~~a~~v-g~~AvRy~~---------L~~-~~----~~~~~Fd-~d-~~~~~~~~t~~ylqYa~aRi~Silr 519 (629)
T 2zue_A 457 PALSDEEKAEVAEKV-GIGAIRYNL---------IKY-SP----DKKIIFR-WE-DVLNFEGESAPYIQYAHARCSSILR 519 (629)
T ss_dssp TTSCHHHHHHHHHHH-HHHHHHHHH---------HSS-CT----TSCEECC-HH-HHSCCSSSSHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhc-ChhHhhHHH---------Hhc-CC----CCCCeec-HH-HHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9 999999999 665 33 7888998 32 2220 0011112221 111
Q ss_pred ccchhhccc-----ccccccCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCC
Q psy1860 418 NDAEEKLSF-----QYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEG 492 (659)
Q Consensus 418 n~~~~~~~~-----~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~ 492 (659)
+....+... ............+..++..+..+.+.+.+++++++++.++..++++...+..+|-+. +.+..+.
T Consensus 520 ka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~--~vl~~~~ 597 (629)
T 2zue_A 520 KAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDH--PVLKAEE 597 (629)
T ss_dssp HHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHC--CSTTSCT
T ss_pred hhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhc--cccCCCh
Confidence 110000000 000001122456778888999999999999999999999999999988888877542 2233222
Q ss_pred Ch-HhHHHHHHHHHHHHHHHHHHhcc
Q psy1860 493 GP-ADCKVALNSLTKVLFTMVRVMAP 517 (659)
Q Consensus 493 ~~-~~~~~~~~~l~~~l~~~~~lL~P 517 (659)
.. ..+.....+...+|...+.||.-
T Consensus 598 ~~~~~RL~L~~a~~~vL~~gL~lLGI 623 (629)
T 2zue_A 598 GVREARLLLVMAVEQVLKNALYLMGI 623 (629)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 21 12222234456666666776654
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.00 E-value=7.3e-11 Score=130.42 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=63.6
Q ss_pred CCcceEeeccccchhH----HHHHHHHHhhhcCCCCCCeEEEeceeecC-CCCccccCCCCCCCCCCCCCcCCCchhhhh
Q psy1860 294 FPADFIAEGIDQTRGW----FYTLLVISTALFKQAPFRNLIANGLVLAQ-DGQKMSKSKRNYPDPMEPPFKNLIANGLVL 368 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w----~~~~ll~~~~~~~~~p~k~v~~hG~v~~~-~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~ 368 (659)
+..++.+.|+|++.+| ....+.+. ..|..|+ .++.||||+++ +|+|||||+||+|+|.++++.| |+|++|+
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~--alG~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~-~pdalR~ 304 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE--VYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVL-EPGLVRF 304 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH--HHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTTS-CHHHHHH
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH--HhCCCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHc-CHHHHHH
Confidence 4456668899999876 33333322 2344444 67888999996 6999999999999999999999 9999999
Q ss_pred hcccccccccccCCCCCccccCcccccccCchh-hhHHHHHHHHHH
Q psy1860 369 SSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPV-HVWSVCLILKEK 413 (659)
Q Consensus 369 ~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~-~~~~~~~~~~~l 413 (659)
|+ +.. .+ .++.+|+ .+ .+..+.+.++++
T Consensus 305 ~l---------~~~-~~----~~~~~fs---~~~~l~~~~~~~~~~ 333 (523)
T 1irx_A 305 IY---------ARH-RP----NKEIKID---LGLGILNLYDEFEKV 333 (523)
T ss_dssp HH---------HSS-CT----TSCEEEC---CSTTHHHHHHHHHHH
T ss_pred HH---------Hhc-CC----CCCceeC---cchhHHHHHHHHHHH
Confidence 99 654 34 7889998 33 455555444554
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=97.47 E-value=0.00017 Score=80.31 Aligned_cols=187 Identities=10% Similarity=0.046 Sum_probs=106.4
Q ss_pred eEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEe-ceeecCCCCccccCCCCCCCCCCCCCcCCCc-------------
Q psy1860 298 FIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIAN-GLVLAQDGQKMSKSKRNYPDPMEPPFKNLIA------------- 363 (659)
Q Consensus 298 ~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~h-G~v~~~~G~KMSKS~GN~i~p~~~i~~y~ga------------- 363 (659)
+++.|.||. .||..+.. .+...|. |+...+.| +|.+. + |||||+||+|++.|+++++ +.
T Consensus 368 IyV~g~~q~-~~f~q~~~-~~~~lG~-~~~~~~~Hv~fg~v-~--kMSkR~G~~v~L~dLlde~-~~~a~~~~~~~~~~~ 440 (607)
T 1f7u_A 368 IYVIASQQD-LHAAQFFE-ILKQMGF-EWAKDLQHVNFGMV-Q--GMSTRKGTVVFLDNILEET-KEKMHEVMKKNENKY 440 (607)
T ss_dssp EEECCGGGH-HHHHHHHH-HHHHTTC-GGGGGEEEECCCCE-E--SCCGGGTCCCBHHHHHHHH-HHHHHHHHHTCHHHH
T ss_pred EEEEcChHh-hHHHHHHH-HHHHcCC-CcCcEEEEeccccc-c--cccCCCCCcccHHHHHHHH-HHHHHHHHHhCcccc
Confidence 677888773 34433322 2222233 44333444 55332 2 7999999999999999987 65
Q ss_pred ---------------hhhhhhcccccccccccCCCCCccccCcccccccCchhhhHHH--------HHHHHHHH-HHhcc
Q psy1860 364 ---------------NGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSV--------CLILKEKV-LLAND 419 (659)
Q Consensus 364 ---------------D~lR~~l~~~~msk~~~~~~~~~~~~~~d~~f~lw~~~~~~~~--------~~~~~~l~-~l~n~ 419 (659)
.++||+. ++. .+ .++.+|+ |+ . +..+ .-...++- ++.+.
T Consensus 441 ~~~~e~~~~a~~vgi~avry~~---------Ls~-~~----~s~~~Fd-~d-~-~~~~~g~t~pylqYa~aRi~SIlrka 503 (607)
T 1f7u_A 441 AQIEHPEEVADLVGISAVMIQD---------MQG-KR----INNYEFK-WE-R-MLSFEGDTGPYLQYAHSRLRSVERNA 503 (607)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHH---------HSS-CT----TCCEECC-HH-H-HHCCSSSSHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHH---------hcc-CC----CCCcccC-HH-H-HHHHhccchHHHHHHHHHHHHHHHHh
Confidence 3689988 554 23 6788888 32 1 1111 01111111 11111
Q ss_pred chhhcccccc----cccC-CCChhhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHccccccCCCCh
Q psy1860 420 AEEKLSFQYN----EAEG-STNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGP 494 (659)
Q Consensus 420 ~~~~~~~~~~----~~~~-~~~~~d~~il~~l~~~~~~~~~~~e~~~~~~a~~~l~~f~~~~~~~Yle~~K~~l~~~~~~ 494 (659)
. ..... .... ..+..++.++..+.++.+.+.+++++++.+.++.-++++...+..+|=+. +.+ .++ .
T Consensus 504 ~----~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~--~Vl-~~~-~ 575 (607)
T 1f7u_A 504 S----GITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVL--WVA-GQT-E 575 (607)
T ss_dssp T----TSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC--CST-TSC-H
T ss_pred c----CCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC--CCC-CCC-H
Confidence 0 01000 0001 12455677888888899999999999999999999999988889988642 223 222 2
Q ss_pred Hh---HHHHHHHHHHHHHHHHHHhc
Q psy1860 495 AD---CKVALNSLTKVLFTMVRVMA 516 (659)
Q Consensus 495 ~~---~~~~~~~l~~~l~~~~~lL~ 516 (659)
+. +.........+|...+.||.
T Consensus 576 ~~~~aRL~L~~a~~~vL~~gL~LLG 600 (607)
T 1f7u_A 576 ELATARLALYGAARQVLYNGMRLLG 600 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 22222334556666666664
No 32
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.35 E-value=0.00015 Score=74.70 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=51.4
Q ss_pred cCCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 293 RFPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 293 ~~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+.+|+.+.|.||.+.. +.+-+....+ ...| ..+.|+++.+.+|+|||||.||+|++.+ .+|.+|..+
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l~rdla~~~~--~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki 236 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHMLARENLPRLG--YSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKI 236 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHGGGGT--CCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHH
T ss_pred hcCCCEEEechhhHHHHHHHHHHHHhcC--CCCc--eEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHH
Confidence 35789999999997643 3333333322 2344 4778999999999999999999999886 589999888
No 33
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.27 E-value=7.4e-05 Score=86.50 Aligned_cols=78 Identities=23% Similarity=0.440 Sum_probs=49.6
Q ss_pred cCchHHHHHHHhcCCEeEeeccccc--------------CCccccCCCcEEEcccCceeeechHhHHHHHHhcCCceEec
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKHS--------------YPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVP 177 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h~--------------~p~~~r~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~P 177 (659)
++.+.++..|.++|+++......+. .++|||||.||+++.++||||+++++++++++.++...-+|
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp 233 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWP 233 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhccccc
Confidence 3567899999999999874432221 15799999999999999999999999999999988764467
Q ss_pred Ccccchhhhhhhc
Q psy1860 178 EFVKEKRFGNWLR 190 (659)
Q Consensus 178 ~~~~~~~~~~~l~ 190 (659)
+.. +....+||-
T Consensus 234 ~~v-~~~~~~wig 245 (880)
T 4arc_A 234 DTV-KTMQRNWIG 245 (880)
T ss_dssp HHH-HHHHHHHHC
T ss_pred HHH-HHHHHhhhc
Confidence 776 356678885
No 34
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.58 E-value=0.0015 Score=66.86 Aligned_cols=69 Identities=14% Similarity=-0.094 Sum_probs=52.2
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
++|+.+.|.||.... +.+-+...... ..| ..+.+.++...+|+|||||.||.|+..+ ++. .++.++-.+
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r~n~--~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~t-sp~~~~~ki 260 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRRLHQ--NQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKT-SPYKFYQFW 260 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHC--CCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTS-CHHHHHHHH
T ss_pred CceEEecCchhHHHHHHHHHHHHHhCC--CCc--eeeccCccCCCCcccccCCCCCeeeccC--CCC-CHHHHHHHH
Confidence 789999999997665 45555544432 333 4567888888899999999999999887 566 777777666
No 35
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=96.57 E-value=0.0017 Score=75.71 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=62.4
Q ss_pred cCchHHHHHHHhcCCEeEeecccc--------------cCCcccc-CCCcEEEcccCceeeechHhHHHHHHhcCCceEe
Q psy1860 112 DADKPIIKHLKEQSRLVSAGSVKH--------------SYPFCWR-SDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWV 176 (659)
Q Consensus 112 ~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~r-~g~~v~~~~~~qwFi~~~~~k~~~~~~~~~~~~~ 176 (659)
++...++..|.++|+++......+ .+++|+| ||.+++.+.++||||+++++++++++.++... .
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~-~ 212 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN-W 212 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB-S
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcC-C
Confidence 455789999999999987322111 2468999 99999999999999999999999999998776 7
Q ss_pred cCcccchhhhhhhc
Q psy1860 177 PEFVKEKRFGNWLR 190 (659)
Q Consensus 177 P~~~~~~~~~~~l~ 190 (659)
|+..+ +...+|+.
T Consensus 213 p~~~~-~~~~~wi~ 225 (878)
T 2v0c_A 213 PEKVK-AMQRAWIG 225 (878)
T ss_dssp CHHHH-HHHHHHHC
T ss_pred CHHHH-HHHHHHhc
Confidence 87763 66678885
No 36
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=96.35 E-value=0.0028 Score=64.83 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=47.6
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cC---CCCCCeEE--EeceeecCCCCccccCCCCCCCCCCCCCcCCCchhh
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FK---QAPFRNLI--ANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGL 366 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~---~~p~k~v~--~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~l 366 (659)
|-+|+...|.||.... +.+-+...... ++ ..| +.++ ++.++.+-+|+|||||.||.|+..| .++.+
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i 210 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTL 210 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHH
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC------CHHHH
Confidence 5689999999997655 45555544432 11 233 4454 4778888899999999999988765 34555
Q ss_pred hhhc
Q psy1860 367 VLSS 370 (659)
Q Consensus 367 R~~l 370 (659)
+-.+
T Consensus 211 ~~KI 214 (322)
T 3tzl_A 211 KKQI 214 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 37
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=96.34 E-value=0.0033 Score=64.76 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cC---CCCCCeEEE-eceeecCCCCccccCCCCCCCCCCCCCcCCCchhhh
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FK---QAPFRNLIA-NGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLV 367 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~---~~p~k~v~~-hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR 367 (659)
|-+|+...|.||.... +.+-+...... ++ ..| ..++. +.++.+.+|+|||||.||.|+..| .++.++
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~ 224 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELE 224 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHH
Confidence 6789999999998765 45555544432 12 234 34444 678888899999999999998876 455555
Q ss_pred hhc
Q psy1860 368 LSS 370 (659)
Q Consensus 368 ~~l 370 (659)
-.+
T Consensus 225 ~Ki 227 (340)
T 2g36_A 225 QTI 227 (340)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 38
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.28 E-value=0.0033 Score=66.45 Aligned_cols=69 Identities=17% Similarity=0.003 Sum_probs=48.6
Q ss_pred CcceEeeccccchhH-HHHHHHHHh-hhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVIST-ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~-~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+|+.+.|.||.... +.+-+.... . +..| -.+++.++...+|+|||||.||.|+..+- +- .++.++=++
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~--~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d~--~t-sp~~i~qki 255 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKG--EARA--FGLTIPLVTKADGTKFGKTESGTIWLDKE--KT-SPYEFYQFW 255 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC----CC--EEEEECCCCCTTSCCTTCCSSCCCBSSTT--TS-CHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcC--CCCe--eecccccccCCCcccccCCCCCeEecCCC--CC-CHHHHHHHH
Confidence 799999999997665 344444443 2 2333 56778899989999999999999987752 33 555665444
No 39
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=96.26 E-value=0.0031 Score=65.91 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=40.5
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCC-CCCCCCCCCcCCCchhhhhhc
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN-YPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN-~i~p~~~i~~y~gaD~lR~~l 370 (659)
+.+|+.+.|.||.... +.+-+....+. ..| ..+.+.++...+|+|||||.|| .|+..|- ++.++-.+
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~~r~~~--~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d~------p~~i~kKi 245 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYLPALGY--SKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLDR------KEDVKKKL 245 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGGTC--CCC--EEEEECCCCCSSCC-------CCSCBTTCC------HHHHHHHH
T ss_pred hcCCEEEcChhHHHHHHHHHHHHHHcCC--CCC--EEEecCccCCCCcccccCCCCCCeEeccCC------HHHHHHHH
Confidence 5688999999997665 44455444432 344 4667899999999999999999 6877653 45555444
No 40
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.21 E-value=0.0038 Score=66.13 Aligned_cols=69 Identities=17% Similarity=0.008 Sum_probs=49.1
Q ss_pred CcceEeeccccchhH-HHHHHHHHh-hhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVIST-ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~-~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+|+.+.|.||.... +.+-+.... . +..| -.+++.++...+|+|||||.||.|+..+- +- .++.++=++
T Consensus 186 ~~~i~~gG~DQ~~ni~~grdla~r~~~--~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~--~t-sp~~i~~ki 256 (420)
T 1jil_A 186 NCKIQVGGSDQWGNITSGIELMRRMYG--QTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDAE--KT-SPYEFYQFW 256 (420)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCCC--EEEEECCCBCTTSCBTTBCSSSBCBSSTT--TS-CHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcC--CCCe--eEeecccccCCccccccCCCCCeEecCCC--CC-CHHHHHHHH
Confidence 799999999997665 344444444 2 2333 56778899999999999999999987752 33 555555444
No 41
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.19 E-value=0.003 Score=65.49 Aligned_cols=69 Identities=17% Similarity=-0.066 Sum_probs=38.3
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+|+...|.||.... +.+-+...... ..| -.+.+.++...+|+|||||.||.|+..+ ++- .++.++-.+
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~--~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~t-sp~~i~~ki 279 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTG--EDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKT-SPFELYQFF 279 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSS--CCC--EEEEECCCC-------------CCBSST--TTS-CHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC--CCc--cccccccccCCCcccccCCCCCeeeccC--CCC-CHHHHHHHH
Confidence 799999999997655 45555544432 334 4677888888899999999999998886 344 667776665
No 42
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.14 E-value=0.0046 Score=65.45 Aligned_cols=69 Identities=19% Similarity=-0.023 Sum_probs=48.9
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCC-CCCCCCCCCcCCCchhhhhhc
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN-YPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN-~i~p~~~i~~y~gaD~lR~~l 370 (659)
.+|+.+.|.||.... +.+-+...... ..| -.+++.++...+|+|||||.|| .|+..+ ++. .++.++=++
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~--~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~t-sp~~i~qki 257 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG--ATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMT-SPYAWYQYF 257 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC--CCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTS-CHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC--CCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCC-CHHHHHHHH
Confidence 899999999997655 34444444432 333 5677889988899999999999 888775 234 556665544
No 43
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.02 E-value=0.0051 Score=64.53 Aligned_cols=73 Identities=14% Similarity=-0.118 Sum_probs=46.8
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhh-----------cCCCC--CCeEEEeceeecCCCCccccCCCCCCCCCCCCCcC
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTAL-----------FKQAP--FRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKN 360 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~-----------~~~~p--~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~~y 360 (659)
.+|+...|.||.... +.+-+.....- ..+.+ -.-.+.+.++...+|+|||||.||.|+..+-. -
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~--t 309 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQ--T 309 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTTT--S
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCCC--C
Confidence 799999999995443 22223222110 11111 13566888999999999999999999877633 3
Q ss_pred CCchhhhhhc
Q psy1860 361 LIANGLVLSS 370 (659)
Q Consensus 361 ~gaD~lR~~l 370 (659)
+++.++=++
T Consensus 310 -sp~~i~qki 318 (392)
T 1y42_X 310 -SVFDFYGYF 318 (392)
T ss_dssp -CHHHHHHHH
T ss_pred -CHHHHHHHH
Confidence 556665554
No 44
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0046 Score=65.16 Aligned_cols=67 Identities=22% Similarity=0.185 Sum_probs=38.2
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCC-CCccccCCCCC-CCCCCCCCcCCCchhhhhhc
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQD-GQKMSKSKRNY-PDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~-G~KMSKS~GN~-i~p~~~i~~y~gaD~lR~~l 370 (659)
+.+|+.+.|.||.... +.+-+....+. ..| ..+.|.++.+.+ |+|||||.||. |+..| .++.+|--+
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~~r~~~--~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D------~p~~i~kKI 250 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENLPSLGY--KKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLE------EPKQVKKKI 250 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGGTC--CCC--EEEEECCCCCCC----------CCSCBTTC------CHHHHHHHH
T ss_pred hCCCEEecCccHHHHHHHHHHHHHHcCC--CCC--EEEecccccCCCCCCcCCCCCCCCEEeccC------CHHHHHHHH
Confidence 6789999999997655 44444444432 334 566688998888 99999999996 87765 345555444
No 45
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.91 E-value=0.0074 Score=64.06 Aligned_cols=57 Identities=32% Similarity=0.282 Sum_probs=42.8
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC-ccccCCCCCCCCCC
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ-KMSKSKRNYPDPME 355 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~-KMSKS~GN~i~p~~ 355 (659)
.+|+...|.||.... +.+-+.... +..| ..++++.++...+|. |||||.||.|+..+
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdlarr~---~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQRAY---GQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHHHHT---TCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEEEechHHHHHHHHHHHHHHHh---CCCC-ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 489999999997544 344444443 2333 457788999988996 99999999998887
No 46
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=95.91 E-value=0.0066 Score=62.82 Aligned_cols=70 Identities=26% Similarity=0.218 Sum_probs=46.5
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhh-hcC---CCCCCeEEE-eceeecCCCC-ccccCCCCCCCCCCCCCcCCCchhh
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTA-LFK---QAPFRNLIA-NGLVLAQDGQ-KMSKSKRNYPDPMEPPFKNLIANGL 366 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~-~~~---~~p~k~v~~-hG~v~~~~G~-KMSKS~GN~i~p~~~i~~y~gaD~l 366 (659)
|-+|+...|.||.... +.+-+..... .+| ..| ..++. +.++.+.+|+ |||||.||.|+..+- ++.+
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~------p~~i 233 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS------ADEV 233 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC------HHHH
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC------HHHH
Confidence 5689999999997755 4444444332 112 244 44554 5788888997 999999998877653 4555
Q ss_pred hhhc
Q psy1860 367 VLSS 370 (659)
Q Consensus 367 R~~l 370 (659)
+-.+
T Consensus 234 ~~Ki 237 (351)
T 1yi8_B 234 ARKV 237 (351)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 47
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.68 E-value=0.0052 Score=66.46 Aligned_cols=69 Identities=22% Similarity=0.149 Sum_probs=47.6
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
.+..+-|.|++-+- .+..++.+++. ..| ....++++++.+|+|||||.||+ ...++.+ .| .++++|.|+
T Consensus 204 IthviRG~D~~~~t~~q~~l~~alg~--~~P--~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~-~peal~~~l 274 (492)
T 2cfo_A 204 ITDVIRGEDHIGNTPKQILLYEALGA--TPP--NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGY-LAPALANYM 274 (492)
T ss_dssp CSEEEEEGGGTTHHHHHHHHHHHTTC--CCC--EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTC-CHHHHHHHH
T ss_pred CCeEEEchhhhhCHHHHHHHHHHcCC--CCc--eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCC-CHHHHHHHH
Confidence 34445566666444 34445454433 233 66677999999999999999997 5555554 48 899999999
No 48
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=95.62 E-value=0.0099 Score=61.14 Aligned_cols=70 Identities=27% Similarity=0.276 Sum_probs=45.6
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhh-hcC---CCCCCeEEEe--ceeecCCC-CccccCCCCCCCCCCCCCcCCCchh
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTA-LFK---QAPFRNLIAN--GLVLAQDG-QKMSKSKRNYPDPMEPPFKNLIANG 365 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~-~~~---~~p~k~v~~h--G~v~~~~G-~KMSKS~GN~i~p~~~i~~y~gaD~ 365 (659)
|-+|+...|.||.... +.+-+..... .++ ..| ..++.- .++.+.+| +|||||.||.|+..+ .++.
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P-~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~ 212 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP-QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEES 212 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC-EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHH
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC-eeecccccccccCCCCccccCCCCCCeeeCcC------CHHH
Confidence 6789999999998765 4444443321 112 234 333332 58888899 999999999888765 3455
Q ss_pred hhhhc
Q psy1860 366 LVLSS 370 (659)
Q Consensus 366 lR~~l 370 (659)
++-.+
T Consensus 213 i~~Ki 217 (337)
T 2el7_A 213 IWQKI 217 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 49
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=95.17 E-value=0.023 Score=59.14 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=41.5
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCC-eEEEeceeecC-CCC-ccccCC-CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFR-NLIANGLVLAQ-DGQ-KMSKSK-RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k-~v~~hG~v~~~-~G~-KMSKS~-GN~i~p~~ 355 (659)
+-+|+...|.||-... +.+-+....+. . |+ .++.+.++.+- +|. |||||. ||.|+..|
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~~~---~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIKKI---K-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHHTC---S-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHhCC---C-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC
Confidence 4689999999997655 55555555432 2 22 46778888884 885 999999 57888764
No 50
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=95.15 E-value=0.017 Score=59.71 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=41.9
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhh-hcC---CCCCCeEEE--eceeecCCC--CccccCCCC---CCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTA-LFK---QAPFRNLIA--NGLVLAQDG--QKMSKSKRN---YPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~-~~~---~~p~k~v~~--hG~v~~~~G--~KMSKS~GN---~i~p~~ 355 (659)
|-+|+...|.||.... +.+-+..... .++ ..| ..++. +.++.+-+| +|||||.|| .|...|
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 6789999999998765 4544544432 112 234 34443 577777788 999999999 888775
No 51
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=95.14 E-value=0.016 Score=61.54 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=38.1
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCC-CCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRN-YPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN-~i~p~~ 355 (659)
|-+++...|.||-... +.+-+....++ ..| .++.+.++...+| +|||||.|| .|+..+
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r~~~--~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADKLKY--SKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHHHTS--CCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHhCC--CCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 5578888999997665 55555555443 355 3578899999999 999999999 787765
No 52
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=95.13 E-value=0.015 Score=59.26 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=39.4
Q ss_pred CCcceEeeccccchhHHHHHHHHHhhhcCCCCCCeEEEeceeecCCC-CccccCCCCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDG-QKMSKSKRNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G-~KMSKS~GN~i~p~~ 355 (659)
+-+|+.+.|.||.... .+...++ ...| .++.+.++.+.+| +|||||.||.|+..+
T Consensus 162 ~~~~~v~~G~DQ~~~~---~l~R~i~--~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH---MLARELL--PKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp HTCSEEEEEGGGHHHH---HHHHHHS--SSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred hCCCEEEcChhHHHHH---HHHHHhc--CCCc--EEeeccccccCCcccccCCCCcceecCCC
Confidence 3578999999997633 2222222 2233 4577889999899 799999999998775
No 53
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.05 E-value=0.0041 Score=67.51 Aligned_cols=43 Identities=12% Similarity=-0.062 Sum_probs=26.1
Q ss_pred CCeEEEeceeecCCCCccccCCCC---------------CCCCCCCCC-cCCCchhhhhhc
Q psy1860 326 FRNLIANGLVLAQDGQKMSKSKRN---------------YPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 326 ~k~v~~hG~v~~~~G~KMSKS~GN---------------~i~p~~~i~-~y~gaD~lR~~l 370 (659)
+-+..-+|++.. +|+|||||+|| ..+..++.+ .| .++++|.|+
T Consensus 314 ~P~y~H~~~L~~-~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~-~PeaIr~fl 372 (553)
T 3aii_A 314 PPEFIHYGRLKM-DDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGI-RPEAIRKLM 372 (553)
T ss_dssp CCEEECCCCBC--------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTC-CHHHHHHHH
T ss_pred CCeEEEeeEEec-CCceechhhhhhhccccccccccCcchHHHHHHHHcCC-CHHHHHHHH
Confidence 345678888865 99999999997 333344444 48 999999999
No 54
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=94.96 E-value=0.021 Score=58.54 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=41.5
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cC---CCCCCeEEE--eceeecCCC--CccccCCCC-C--CCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FK---QAPFRNLIA--NGLVLAQDG--QKMSKSKRN-Y--PDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~---~~p~k~v~~--hG~v~~~~G--~KMSKS~GN-~--i~p~~ 355 (659)
|-+|+...|.||.... +.+-+....+. ++ ..| .-++. +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 6789999999998755 44444444331 11 234 34443 577778788 999999999 6 87665
No 55
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=94.77 E-value=0.022 Score=59.27 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=45.9
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCC-----------------CCccccC-CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQD-----------------GQKMSKS-KRNYPDPM 354 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~-----------------G~KMSKS-~GN~i~p~ 354 (659)
|-+|+...|.||...+ +.+-+....+. ..| .++.|.++.+.+ |+||||| .||.|+..
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla~r~~~--~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVAEKLGR--KKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHHTTTTC--CCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHHHHHcCC--CCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 5689999999997655 45555444332 344 357788888877 7999999 78989877
Q ss_pred CCCCcCCCchhhhhhc
Q psy1860 355 EPPFKNLIANGLVLSS 370 (659)
Q Consensus 355 ~~i~~y~gaD~lR~~l 370 (659)
|- ++.++-.+
T Consensus 252 d~------p~~i~~Ki 261 (364)
T 2cya_A 252 DS------DDDIRRKI 261 (364)
T ss_dssp CC------HHHHHHHH
T ss_pred CC------HHHHHHHH
Confidence 63 45555444
No 56
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=94.50 E-value=0.026 Score=59.12 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=31.4
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCCCCCCCC
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRNYPDPME 355 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN~i~p~~ 355 (659)
+|+...|.||-... +.+-+....+. ..| .++.+.++..-+| +|||||.||.|+..|
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~--~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGY--LKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTC--CCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCC--CCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 77999999997655 45555554432 344 4677889988899 799999999998775
No 57
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=94.48 E-value=0.044 Score=57.13 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=41.7
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC-ccccC-CCCCCCCCC
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ-KMSKS-KRNYPDPME 355 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~-KMSKS-~GN~i~p~~ 355 (659)
+++...|.||-... +.+-+....+. ..| .++.+.++.+-+|. ||||| .||.|...|
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r~n~--~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATTLNF--IQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHTC--CCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHHHHHHHHHHHHHcCC--CCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 55555699997665 56666665543 345 56788899888895 99999 899998765
No 58
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=94.36 E-value=0.041 Score=57.73 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=42.8
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCC-CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSK-RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~-GN~i~p~~ 355 (659)
+-+++...|.||-... +.+-+....+. ..| .++.+.++..-+| .|||||. ||.|...|
T Consensus 242 ~~a~lvpvG~DQ~~~i~l~Rdla~r~~~--~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 242 GAMCLVPAAVDQDPFFRLARDKAKALGE--KKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TCEEEEEEEGGGHHHHHHHHHHHHHHTC--CCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCCeEEeeccchHHHHHHHHHHHHHcCC--CCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 4577888999997655 55556555543 344 4568889998899 6999999 78898765
No 59
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=94.35 E-value=0.029 Score=58.59 Aligned_cols=56 Identities=21% Similarity=0.167 Sum_probs=40.2
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCC-CCCCCC
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRN-YPDPME 355 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN-~i~p~~ 355 (659)
+|+...|.||.... +.+-+....+. ..| ..+.+.++..-+| +|||||.+| .|...|
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~r~n~--~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAESLGY--YKT--AALHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGGGTS--CCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHHHHHHHHHHHHHcCC--CCC--eeeecccccCCCCCccccccCCCCCeeeCCC
Confidence 67889999997654 45555444432 344 4566889888888 599999998 887654
No 60
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=94.26 E-value=0.039 Score=56.94 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=39.9
Q ss_pred CcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecC-CC-CccccCC-CCCCCCCC
Q psy1860 295 PADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQ-DG-QKMSKSK-RNYPDPME 355 (659)
Q Consensus 295 p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~-~G-~KMSKS~-GN~i~p~~ 355 (659)
-+|+...|.||.... +.+-+....+. ..| .++.+.++..- +| .|||||. ||.|+..|
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia~r~~~--~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYANDRGL--KIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHHHHTTC--CCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHHHHHHHHHHHHHhCC--CCc--eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 578999999997655 44555444322 223 46777888877 57 7999999 58887765
No 61
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=93.75 E-value=0.043 Score=58.11 Aligned_cols=59 Identities=22% Similarity=0.139 Sum_probs=40.4
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCC-CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRN-YPDPMEP 356 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN-~i~p~~~ 356 (659)
|-+++...|.||-... +.+-+....++ ..| .++++.++...+| +|||||.|| .|+..+-
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla~r~~~--~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~ 317 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVAPRIGY--PKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 317 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGTC--CCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTCC
T ss_pred CCceEEEeehhhHHHHHHHHHHHHHhCC--CCc--eEeecccccCCCCCccccCCCCCCCeeeccCC
Confidence 4445556799996654 34444333332 345 4578899999999 899999999 7877653
No 62
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=93.61 E-value=0.043 Score=58.99 Aligned_cols=59 Identities=22% Similarity=0.139 Sum_probs=40.5
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCC-CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRN-YPDPMEP 356 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN-~i~p~~~ 356 (659)
|-+++...|.||.... +.+-+....++ ..| .++.+.++...+| .|||||.|| .|+..+-
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~~--~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPRIGY--PKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGTC--CCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHHHHHHHHHHHHHhCC--CCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 3445666799996654 44444333332 345 3578899999999 899999999 7876653
No 63
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=93.59 E-value=0.034 Score=59.93 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=48.9
Q ss_pred cceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 296 ADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 296 ~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
.+-.+-|.|++-.- -+..++.+++. ..| ....++++++.+|+||||++||+ ...++.+ .| -++++|.|+
T Consensus 219 ithvirG~D~~~~t~~q~~l~~aLG~--~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~-~peal~~~l 289 (481)
T 2o5r_A 219 ITHVIRGDDHLSNTLRQLALYEAFEK--APP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGY-LPEALVNYL 289 (481)
T ss_dssp CSEEEEEGGGHHHHHHHHHHHHHTTC--CCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTC-CHHHHHHHH
T ss_pred CCeEEEChhHHHhHHHHHHHHHHcCC--CCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCC-CHHHHHHHH
Confidence 34557899987433 34444444443 233 56667888889999999999998 6666665 57 899999888
No 64
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=93.43 E-value=0.071 Score=55.77 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=27.8
Q ss_pred ceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCC--CccccCCCC-CCCCCC
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDG--QKMSKSKRN-YPDPME 355 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G--~KMSKS~GN-~i~p~~ 355 (659)
.+...|.||-... +.+-+....+. ..| .++.+.++..-+| .|||||.+| .|+..|
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~~--~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLGY--LKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGTC--CCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHHHHHHHHHHHHHcCC--CCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 3568999996554 34444443332 334 4678899988899 799999998 787665
No 65
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=92.66 E-value=0.099 Score=58.76 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCC-eEEEeceeecC-CC-CccccCCC-CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFR-NLIANGLVLAQ-DG-QKMSKSKR-NYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k-~v~~hG~v~~~-~G-~KMSKS~G-N~i~p~~ 355 (659)
+-+|+...|.||-... +.+-+....+. . ++ .++.+.++.+- +| +|||||.+ |.|...|
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r~n~---~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D 244 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDLIGR---K-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 244 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHTTC---C-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTC
T ss_pred hCCCEEeccccHHHHHHHHHHHHHHhCC---C-CCceEeecCeeecCCCCCcCCCCCCCCCeeeccC
Confidence 4689999999997654 45555544432 2 22 46678888887 78 49999998 6887654
No 66
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=92.61 E-value=0.062 Score=57.65 Aligned_cols=68 Identities=16% Similarity=0.005 Sum_probs=48.1
Q ss_pred ceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
+-.+-|.|++-.- .+..++.+++. ..| ....++++++.+|+||||++||. ...++.+ .| -++++|-|+
T Consensus 201 thvirG~D~~~~t~~q~~l~~alg~--~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~-~peal~~~l 270 (468)
T 1j09_A 201 TDVIRAEEWLVSTPIHVLLYRAFGW--EAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGF-LPEALRNYL 270 (468)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHHTC--CCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTC-CHHHHHHHH
T ss_pred CeEEEChhhhhhHHHHHHHHHHcCC--CCC--eEEEeeeeeCCCCCccccccchh-hHHHHHHCCC-CHHHHHHHH
Confidence 3345688887554 45555555544 233 56667898999999999999998 4455544 47 899999988
No 67
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=92.52 E-value=0.099 Score=52.62 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=21.2
Q ss_pred EeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCC
Q psy1860 299 IAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNY 350 (659)
Q Consensus 299 ~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~ 350 (659)
.+-|.|++-.- -+..++.+++. |.-.+..++++++.+|+|||||+||+
T Consensus 188 vIrG~D~l~~t~~q~~l~~alG~----~~p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 188 IVRGADLIEPTVRQISLYQLFGW----KVPDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHTC----CCCEEEEECBCCC-------------
T ss_pred EEeCccccccHHHHHHHHHHcCC----CCCeEEEeeeeECCCCCcccccCCcc
Confidence 33499987543 34444444432 33477888999899999999999998
No 68
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=92.15 E-value=0.085 Score=56.84 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=48.3
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
-.+-|.|++-.- .+..++.+++. ..| ....++++++.+|+||||+.|++ ...++.+ .| -++++|-|+
T Consensus 214 hViRG~D~l~~tp~q~~l~~aLG~--~~P--~f~H~pli~~~~g~KLSKR~g~~-~l~~~r~~G~-~peal~n~l 282 (488)
T 3afh_A 214 HVFRGEDHLSNTPKQLMIYEAFGW--EAP--VFMHIPLILGSDRTPLSKRHGAT-SVEHFRREGI-LSRALMNYL 282 (488)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHHTC--CCC--EEEEECCEECTTSSBCCTTTSCC-BHHHHHHHTC-CHHHHHHHH
T ss_pred EEEEchhhhhCHHHHHHHHHHcCC--CCC--eEEEEeeeeCCCCCcccCcCCcc-cHHHHHHCCC-CHHHHHHHH
Confidence 345688887554 45555555554 233 66677899999999999999994 5555555 47 899999988
No 69
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=91.79 E-value=0.091 Score=54.74 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh----c-C-C-CCCCeEEEeceeecCCC------------------CccccCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL----F-K-Q-APFRNLIANGLVLAQDG------------------QKMSKSK 347 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~----~-~-~-~p~k~v~~hG~v~~~~G------------------~KMSKS~ 347 (659)
|-+|+...|.||...+ +.+-+....+. + + . .| -++.|.++...+| +|||||.
T Consensus 179 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~ 256 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSK 256 (375)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSC
T ss_pred hCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhcccCCC
Confidence 5689999999997654 44444433322 0 1 1 33 3567888888888 8999998
Q ss_pred -CCCCCCCCCCCcCCCchhhhhhc
Q psy1860 348 -RNYPDPMEPPFKNLIANGLVLSS 370 (659)
Q Consensus 348 -GN~i~p~~~i~~y~gaD~lR~~l 370 (659)
+|.|+..|- ++.+|-.+
T Consensus 257 ~~~~I~L~d~------p~~i~~KI 274 (375)
T 2cyc_A 257 PYSAVFIHDS------PEEIRQKL 274 (375)
T ss_dssp GGGSCBTTCC------HHHHHHHH
T ss_pred CCCeeccCCC------HHHHHHHH
Confidence 788887753 45555444
No 70
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=91.52 E-value=0.085 Score=55.89 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=36.4
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCC--ccccCCCC-CCCCC
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQ--KMSKSKRN-YPDPM 354 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~--KMSKS~GN-~i~p~ 354 (659)
+...|.||.+.. +.+-+....+. ..| .++.+.++.+-+|. |||||.+| .|...
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~rfn~--~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~ 346 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGH--PKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYLT 346 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTS--CCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBTT
T ss_pred eeeeecchHHHHHHHHHHHHHhCC--CCC--eeecCCcccCCCCCCCccCCCCCCCeeeec
Confidence 566799997755 45555544432 233 46778888887885 99999997 66654
No 71
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=91.35 E-value=0.045 Score=59.44 Aligned_cols=70 Identities=16% Similarity=0.043 Sum_probs=43.7
Q ss_pred cceEeeccccch---hH-----HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCC---------------CCC
Q psy1860 296 ADFIAEGIDQTR---GW-----FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN---------------YPD 352 (659)
Q Consensus 296 ~d~~~~G~D~~~---~w-----~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN---------------~i~ 352 (659)
.|-+.+|.+++. -| .+..++.+++ ..++-+.+.+|++. .+|+|||||+|| .++
T Consensus 217 vDDh~~GITHviRg~e~~~n~~~q~~l~~alg---~~~~P~~~~f~hLn-~~g~KLSKR~~~~~v~~g~v~gWDDPr~~T 292 (553)
T 1qtq_A 217 ISDALEGITHSLCTLEFQDNRRLYDWVLDNIT---IPVHPRQYEFSRLN-LEYTVMSKRKLNLLVTDKHVEGWDDPRMPT 292 (553)
T ss_dssp HHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSC---CSCCCEEEEECCCC-BTTSCCCHHHHHHHHHTTSSSCTTCTTSCB
T ss_pred EEeccCCcceEeeccchhhhHHHHHHHHHHcC---CCCCCCeEEEEeec-CCCccccccccccccccCcccCCCCcchhh
Confidence 455555555542 23 3444444443 22123555888875 599999999987 334
Q ss_pred CCCCCC-cCCCchhhhhhc
Q psy1860 353 PMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 353 p~~~i~-~y~gaD~lR~~l 370 (659)
..++.+ .| .++++|.|+
T Consensus 293 i~~lr~rGy-~PeAirnfl 310 (553)
T 1qtq_A 293 ISGLRRRGY-TAASIREFC 310 (553)
T ss_dssp HHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHH
Confidence 445554 48 999999998
No 72
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=91.34 E-value=0.19 Score=52.34 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=37.4
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCC--CeEEEe---ceeecC-CC-CccccCC---CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPF--RNLIAN---GLVLAQ-DG-QKMSKSK---RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~--k~v~~h---G~v~~~-~G-~KMSKS~---GN~i~p~~ 355 (659)
|-+|+...|.||.... +.+-+....+..-..+| ..-+++ ..+.+- +| +|||||. ||.|...|
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 5689999999998655 56666555442211222 122222 233322 44 7999999 89997765
No 73
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=91.15 E-value=0.082 Score=54.21 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cCC--CCC---CeEEE--eceeecC-CC-CccccCC---CCCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FKQ--APF---RNLIA--NGLVLAQ-DG-QKMSKSK---RNYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~~--~p~---k~v~~--hG~v~~~-~G-~KMSKS~---GN~i~p~~ 355 (659)
|-+|+...|.||.... +.+-+....+. ++. .+| ..++. +.++.+- +| +|||||. ||.|...|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 4688999999998766 56666665542 221 222 23333 3455544 57 6999999 78997764
No 74
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=91.10 E-value=0.21 Score=51.27 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhh-cCCCCC--CeEEEe---ceeecC-CC-CccccCCC---CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTAL-FKQAPF--RNLIAN---GLVLAQ-DG-QKMSKSKR---NYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~-~~~~p~--k~v~~h---G~v~~~-~G-~KMSKS~G---N~i~p~~ 355 (659)
|-+|+...|.||...+ +.+-+....+. ++ .+| ...+++ .++.+- +| +|||||.+ |.|...|
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYG-DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHS-SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccC-CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 4688999999998765 56666655542 12 122 122232 344443 67 59999997 6787654
No 75
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=90.52 E-value=0.12 Score=55.80 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=47.3
Q ss_pred ceEeeccccchhH-HHHHHHHHh---hhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 297 DFIAEGIDQTRGW-FYTLLVIST---ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 297 d~~~~G~D~~~~w-~~~~ll~~~---~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
+-.+-|.|++..- .+..++..+ ++ |..+ -.+..+.++++.+|+||||+.|++ ...++.+ .| .++++|.|+
T Consensus 210 thviRG~D~~~~t~~q~~l~~aL~~~g~-g~~~-P~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~-~peAl~~~l 284 (498)
T 2ja2_A 210 THVLRGEDLLPSTPRQLALHQALIRIGV-AERI-PKFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGF-IPEGLLNYL 284 (498)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHHHHTTS-CCCC-CEEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTC-CHHHHHHHH
T ss_pred CEEEEChhhhhccHHHHHHHHHHHhhcC-CCCC-CeEEEeeeeECCCCCcccccCCcc-cHHHHHhCCC-CHHHHHHHH
Confidence 4456788887654 234444444 11 2223 267777999999999999999995 4444444 47 899999998
No 76
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=90.40 E-value=0.063 Score=59.31 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=45.3
Q ss_pred eeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCCC-cCCCchhhhhhc
Q psy1860 300 AEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 300 ~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i~-~y~gaD~lR~~l 370 (659)
+-|.|++-.- .+..++.+++. ..| ....++++++.+|+||||+.|+ +...++.+ .| -++++|-|+
T Consensus 320 irG~D~~~~t~~q~~l~~alg~--~~P--~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~-~peal~~~l 386 (592)
T 3al0_C 320 FRGEDHLSNTPKQLMIYEAFGW--EAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGI-LSRALMNYL 386 (592)
T ss_dssp CEEGGGGGGHHHHHHHHTTTTC--CCC--BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTC-CHHHHHHHH
T ss_pred EEchhhHhCHHHHHHHHHHhCC--CCC--eEEEeeeeeCCCCCcccccCCc-ccHHHHHHCCC-CHHHHHHHH
Confidence 4477776544 34444444433 223 5667788999999999999999 46666665 47 899999999
No 77
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=88.02 E-value=0.66 Score=48.12 Aligned_cols=62 Identities=19% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCcceEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCC-CCCCCCC
Q psy1860 294 FPADFIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKR-NYPDPME 355 (659)
Q Consensus 294 ~p~d~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~G-N~i~p~~ 355 (659)
|.+.+.--|.||.... +.+-+....+-.-..|-...+.|-++-.-+|+|||||.. |.|...|
T Consensus 207 y~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 207 YRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred ccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccccCC
Confidence 3445667799998654 666666554321123334677788888889999999985 4665543
No 78
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=86.84 E-value=0.21 Score=56.85 Aligned_cols=41 Identities=12% Similarity=-0.087 Sum_probs=30.0
Q ss_pred eEEEeceeecCCCCccccCCCC---------------CCCCCCCCC-cCCCchhhhhhc
Q psy1860 328 NLIANGLVLAQDGQKMSKSKRN---------------YPDPMEPPF-KNLIANGLVLSS 370 (659)
Q Consensus 328 ~v~~hG~v~~~~G~KMSKS~GN---------------~i~p~~~i~-~y~gaD~lR~~l 370 (659)
+.+.+|++.. +|+|||||+|| .++..++.+ .| .++++|.|+
T Consensus 294 ~~~~fahLn~-~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy-~PeAIr~fl 350 (851)
T 2hz7_A 294 HQYEFGRRGL-EYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV-TPEAVRAFA 350 (851)
T ss_dssp EEEEECCEEE-TTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTC-CHHHHHHHH
T ss_pred CceEEEEecC-CCccccccccccccccCcccCCCCcchhHHHHHHHcCC-CHHHHHHHH
Confidence 4557788765 99999999986 222233443 48 999999998
No 79
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=83.14 E-value=1.2 Score=25.67 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHHHHHHHhhC
Q psy1860 638 HKTLGARLKTAFKPITQAIKVS 659 (659)
Q Consensus 638 ~~~~~~rl~k~~~~~~~~~~~~ 659 (659)
+.+-.+||+|+.+|++.+++++
T Consensus 6 ldanvkrlekevgklegevarl 27 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccHHHHHHHHhhhhhhhhhc
Confidence 4566799999999999998874
No 80
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=71.84 E-value=2.5 Score=45.23 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=46.6
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCC-CcCCCchhhhhhc
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPP-FKNLIANGLVLSS 370 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i-~~y~gaD~lR~~l 370 (659)
-.+-|.|++-+= -+..++.+++. ..| ....+.++++.+|+||||+.|. ++..++. ..| .+++++-|+
T Consensus 223 hViRG~D~l~~tprq~~l~~aLG~--~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~-~peal~n~l 291 (490)
T 4g6z_A 223 HVIRGDDHVNNTPRQINILRALGG--EVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGY-LPEAVLNYL 291 (490)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHTTC--CCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTC-CHHHHHHHH
T ss_pred EEEeccccccChHHHHHHHHHcCC--CCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCC-CHHHHHHHH
Confidence 345588877553 45555566654 334 6777889999999999999986 3333333 357 899999888
No 81
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=50.99 E-value=18 Score=39.06 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=46.1
Q ss_pred eEeeccccchhH-HHHHHHHHhhhcCCCCCCeEEEeceeecCCCCccccCCCCCCCCCCCC-CcCCCchhhhhhc
Q psy1860 298 FIAEGIDQTRGW-FYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPP-FKNLIANGLVLSS 370 (659)
Q Consensus 298 ~~~~G~D~~~~w-~~~~ll~~~~~~~~~p~k~v~~hG~v~~~~G~KMSKS~GN~i~p~~~i-~~y~gaD~lR~~l 370 (659)
-.+-|.|++-+= .+..+..+++. .. .....|.++++.+|+|+||+.|.. ...+.. +.| -++++.=|+
T Consensus 232 HViRG~D~l~sTp~q~~l~~alg~--~~--P~y~H~pli~~~~g~kLSKR~~~~-~v~~~~~~G~-lPeAl~NyL 300 (512)
T 4gri_A 232 HVLRAQEWVSSGPLHVLLYKAFKW--KP--PIYCHLPMVMGNDGQKLSKRHGST-ALRQFIEDGY-LPEAIINYV 300 (512)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHHTC--CC--CEEEEECCCBCTTSSBCCTTTSCC-BHHHHHHHTC-CHHHHHHHH
T ss_pred eeccccccccccHHHHHHHHHcCC--CC--CeEEecchhccccccccCcccccc-cHHHHHHcCC-ChHHHHHHH
Confidence 456688876543 55556666654 23 378899999999999999998764 222222 247 788888776
No 82
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.88 E-value=3e+02 Score=22.58 Aligned_cols=88 Identities=13% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCce-----eEEEEcCCHHHHHHHHHHHHHHHhHhCc-ccEEEEeCCceeEEEecccCCHHH
Q psy1860 567 SVVELGRVIRERVTIPIKYPLR-----EAVVIHNDAQCLQEIRTLESYILQELNV-RTVTFSTDKQKYGVSLRAEPDHKT 640 (659)
Q Consensus 567 ~~i~~~r~~r~~~~i~~~~pl~-----~~~~~~~d~~~~~~l~~l~~~I~~l~nv-~~v~~~~~~~~~~v~l~~~~d~~~ 640 (659)
++......++++.+|...+.+- ..++....++..+.-.++.+.|+..+.. ..+++.-++..+.+.+.+.+ +.
T Consensus 57 elakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvp--eq 134 (170)
T 4hhu_A 57 ELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVP--EQ 134 (170)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEESCC--HH
T ss_pred HHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCc--HH
Confidence 3344556677787775443321 2222332333334445667778777764 57777777776655555554 34
Q ss_pred HHHHHHhhHHHHHHHH
Q psy1860 641 LGARLKTAFKPITQAI 656 (659)
Q Consensus 641 ~~~rl~k~~~~~~~~~ 656 (659)
.++.|.|+..++.+++
T Consensus 135 vrkelakeaerl~~ef 150 (170)
T 4hhu_A 135 VRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4555666666655553
Done!