RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1860
(659 letters)
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 857 bits (2217), Expect = 0.0
Identities = 360/704 (51%), Positives = 454/704 (64%), Gaps = 85/704 (12%)
Query: 2 QSRLETLF-------------KKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTS-AFRV 47
+SRL L E YE+L GS+L G +Y+PLF YF + AFRV
Sbjct: 260 ESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRV 319
Query: 48 LTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLG 107
+ D YVT++SGTGVVH AP FGEDDYRVCLA G+I + + PVD GCFT V+ F G
Sbjct: 320 VADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSG 379
Query: 108 LYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLL 167
YVKDADK II +K + RLV +GS+ HSYPFCWRSDTPLIY+AVPSWF++V+ + LL
Sbjct: 380 RYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLL 439
Query: 168 KCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAEL 227
+ N TYWVP++VKEKRF NWL ARDWA+SR+R+WGTP+P+W+SDDGEE+V +GSIAEL
Sbjct: 440 ENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAEL 499
Query: 228 HRLSGISVEKDLHRESVDSVTIPSVR-PGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDN 286
+LSG+ V DLHR +D +TIPS R P LRRV +VFDCWFESGSMPYA +H+PF+N
Sbjct: 500 EKLSGVKVT-DLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN 558
Query: 287 RRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKS 346
+ F+ FPADF+AEG+DQTRGWFYTL+V+STALF +
Sbjct: 559 KELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDK----------------------- 595
Query: 347 KRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRG-------RL----CPV 395
P FKNLI NGLVL+ DG+KMSKS KNYPDP EV RL PV
Sbjct: 596 ---------PAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPV 646
Query: 396 HVWEPVH-----VWSVCLILKE---------KVLLAN----DAEEKLSFQYNEAE---GS 434
EP+ V+ V +K+ + L+ N + E F + S
Sbjct: 647 VRAEPLRFKEEGVFGV---VKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNS 703
Query: 435 TNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGP 494
N++D WI S ++SL++FVR+EM AYRLYTVVP LV FIDNLTN YVR NR+RLKG G
Sbjct: 704 ANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGE 763
Query: 495 ADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGII 554
DC+ AL++L VL T +VMAP+TPF E LYQNLR + E SIH+ PQ + G +
Sbjct: 764 EDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGEL 823
Query: 555 DQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIR-TLESYILQE 613
D+ IE+SV RMQ+V+EL R IRER P+K PL+E VV+H DA+ L +I L+ Y+L+E
Sbjct: 824 DERIEQSVSRMQTVIELARNIRERHNKPLKTPLKEMVVVHPDAEFLDDITGKLKEYVLEE 883
Query: 614 LNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIK 657
LNVR++ D KY SLRAEP+ LG RL + + + +K
Sbjct: 884 LNVRSLVPCNDPLKY-ASLRAEPNFSVLGKRLGKSMGLVAKEVK 926
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 718 bits (1857), Expect = 0.0
Identities = 268/643 (41%), Positives = 361/643 (56%), Gaps = 71/643 (11%)
Query: 2 QSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGV 61
++ LE + K E+YE++++F+GS L+GL+Y+P FPYF +AFRV+ +VT E GTG+
Sbjct: 260 EALLEKVLK--EDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGI 317
Query: 62 VHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHL 121
VH AP FGEDD+ V G+ +VCPVD G FT V + G +VKDADK II+ L
Sbjct: 318 VHIAPAFGEDDFEVGKKYGL-----PVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDL 372
Query: 122 KEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVK 181
KE+ L A + +HSYP CWR DTPLIY A SWFIRV + +L+ N W PE +K
Sbjct: 373 KERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIK 432
Query: 182 EKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK-DLH 240
+ RFG WL ARDW ISRNRYWGTP+P+W +D I +GSI EL L G VE DLH
Sbjct: 433 DGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLH 492
Query: 241 RESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIA 300
R VD VT+P P +RRVP+V D WF+SGSMPYAQLH+PF+N+ F+ FPADFI
Sbjct: 493 RPYVDEVTLPC--PDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIV 550
Query: 301 EGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKN 360
EGIDQTRGWFYTLL +STALF + PP+KN
Sbjct: 551 EGIDQTRGWFYTLLALSTALFDR--------------------------------PPYKN 578
Query: 361 LIANGLVLSSDGQKMSKSKKNYPDPMEVRGR----------LCPVHVWEPVHV-WSVCLI 409
++ +G VL DGQKMSKS NY DP EV + L WE +
Sbjct: 579 VLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVRE 638
Query: 410 LKEKVLL------------AN-DAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKE 456
+ K LL AN D + + S N +D WI+S SL++ V +
Sbjct: 639 VVRKFLLTLWNVYSFFVLYANLDGFDYPP--AEDEVDSLNELDRWILSRLNSLVKEVTEA 696
Query: 457 MAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMA 516
+ Y + + F+D+L+NWY+R +RRR E D A +L VL T+ R+ A
Sbjct: 697 LDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAA 756
Query: 517 PYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIR 576
P+TPF+ E +YQNL S+H P+ + +ID+E+E ++ ++ +V LGR R
Sbjct: 757 PFTPFIAEEIYQNLTREDA--PESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSAR 814
Query: 577 ERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTV 619
++ I ++ PL + V ++ + + E I ELNV+ V
Sbjct: 815 KKAGIKVRQPLSKITVAEDEEV-AEALERYEDLIKDELNVKEV 856
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 625 bits (1612), Expect = 0.0
Identities = 302/697 (43%), Positives = 431/697 (61%), Gaps = 55/697 (7%)
Query: 2 QSRLETLFKK----EEEYEILDSFQGSTLKGLQYQPLFPYF--KH--VTSAFRVLTDTYV 53
+ RLE + K+ E+ +I++ F+G LKGL+Y+PLF F K+ A+++L D +V
Sbjct: 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFV 428
Query: 54 TEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEI-VCPVDASGCFTAPVSHFLGLYVKD 112
T+++GTG+VH AP +GEDD+RVC GVI ++ I + P+DA+G FT V LY+K+
Sbjct: 429 TDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKE 488
Query: 113 ADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD 172
AD I K LK ++RL+S ++ HSYPFCWRSDTPLIY+A+P+WFIRV + +L+K N
Sbjct: 489 ADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNET 548
Query: 173 TYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSG 232
TYW+P +KEK+F NW+++A+DW ISRNRYWGTPIP+W + E ++CV SI L LSG
Sbjct: 549 TYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSG 608
Query: 233 ISVEKDLHRESVDSVTIPSVRPGK--PPLRRVPEVFDCWFESGSMPYAQLHFPFDN-RRD 289
+ DLHR +D + I + + GK P L+R+PEVFDCWFESGSMPYA++H+PF + D
Sbjct: 609 VKNINDLHRHFIDHIEIKNPK-GKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKED 667
Query: 290 FDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN 349
F FPADFIAEG+DQTRGWFYTLLVIST LF +APF+NLI NGLVLA DG+KMSK +N
Sbjct: 668 FHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKN 727
Query: 350 YPDPM-------EPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVH 402
YPDP+ + + N + + ++ K + N V+ + P + H
Sbjct: 728 YPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEV----VKSFILPFY-----H 778
Query: 403 VWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRL 462
S +E +++ F + + NIMD WI S +SL + V EM AY+L
Sbjct: 779 --SFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKL 836
Query: 463 YTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFL 522
Y V+P+L+ FI+NLTNWY+R+NR R++G G +C +L + + L +MAP+TPF+
Sbjct: 837 YNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFI 896
Query: 523 CEHLYQNLRHLT---------------------GRLERSIHFIMMPQPNRG-IIDQEIER 560
E++YQ LR + G + +S+HFIM+PQ + IID EI
Sbjct: 897 TEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIE 956
Query: 561 SVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVT 620
+++M+ V+ LGRV+RER + K PL+ ++H + + + +YI +ELNV V
Sbjct: 957 LIEKMKDVILLGRVLRERRKVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVE 1016
Query: 621 FSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIK 657
S D + A P++KTLG +L K + IK
Sbjct: 1017 CSNDTS--CLDFSAIPNYKTLGVKLGYNLKKVQNKIK 1051
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 556 bits (1436), Expect = 0.0
Identities = 234/671 (34%), Positives = 352/671 (52%), Gaps = 81/671 (12%)
Query: 2 QSRLETLFKK--EEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGT 59
++ +E++ KK E+YE+L++F+GS L+GL+Y+ F F + AF V+ +VT + GT
Sbjct: 268 KALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDR-AFPVILGDHVTLDDGT 326
Query: 60 GVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIK 119
G+VH AP GE+DY V G++ E++ PVD +G +T + GL+VKDA+K II+
Sbjct: 327 GLVHTAPGHGEEDYEVGKKYGLL----EVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIE 382
Query: 120 HLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEF 179
LKE+ L+ + ++HSYP CWR+ TPLIY+A P WF+ V + +LK + WVP++
Sbjct: 383 DLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDW 442
Query: 180 VKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK-- 237
K RFGN + DW ISR RYWG PIP+W + EI+ + EL L G VE+
Sbjct: 443 GK-NRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVI--TEELEELVGQLVEEKG 499
Query: 238 --DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFP 295
D HR +D + P GK RRVP+V D WF+SGS PYA LH P +N F F
Sbjct: 500 IDDWHRPDIDELLPPCPEDGK-EYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF- 555
Query: 296 ADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
ADF EG DQTRGWFY+ L+ STALF +AP++N++ +G VL + G+KMSKS N DP +
Sbjct: 556 ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQD 615
Query: 356 PPFKNLIANGL---VLSSD-GQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILK 411
A+ L V SSD + + S + EV ++ +
Sbjct: 616 -VIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKI-----------RNTY---- 659
Query: 412 EKVLLAN----DAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVP 467
+ LL N D ++ +D WI+S SL++ VR+ Y + VV
Sbjct: 660 -RFLLGNLDDFDPKK-----DAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVR 713
Query: 468 RLVLFI-DNLTNWYVRMNRRRLKGEGGPA-DCKVALNSLTKVLFTMVRVMAPYTPFLCEH 525
L+ F+ ++L+NWY+ + + RL E + D + A +L +L +VR++AP PF E
Sbjct: 714 ALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEE 773
Query: 526 LYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKY 585
++QNL R E S+H P+ + +ID VE R + ++
Sbjct: 774 IWQNLPG--ERKEESVHLEDWPEVDEELID-------------VEAALAARWEALLKLRD 818
Query: 586 PLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQKYGVSLRAEPDHKTLGARL 645
P+ +A+ LE I LN + V ++ D + + +P+ LG L
Sbjct: 819 PVNKALEAAR----------LEKVIGSSLNAKVVIYTEDS---ELLYKLKPN---LGKVL 862
Query: 646 KTAFKPITQAI 656
T+ + +A+
Sbjct: 863 ITSAVEVAKAL 873
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 553 bits (1428), Expect = 0.0
Identities = 234/614 (38%), Positives = 335/614 (54%), Gaps = 47/614 (7%)
Query: 3 SRLETLFKKE-EEYEILDSFQGSTLKGLQYQPLFPYFK--HVTSAFRVLTDTYVTEESGT 59
+E L+ K +YEI+ +F+GS L+GL+Y+ F A V+ +VT E GT
Sbjct: 267 KLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGT 326
Query: 60 GVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIK 119
G+VH AP GE+DY + G+ E++ PVD G +T V+ F G +VKDADK IIK
Sbjct: 327 GIVHTAPGHGEEDYEIGKKYGL-----EVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIK 381
Query: 120 -------HLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD 172
LK++ L+ A + HSYP CWR+ TP+IY+A WFI+ + + +L+
Sbjct: 382 ANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKK 441
Query: 173 TYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELH---R 229
WVPE+ E RFGNWL DW ISR RYWG PIP+W +D E + VGSI EL
Sbjct: 442 VNWVPEWG-EGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIE 500
Query: 230 LSGISVEK-DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRR 288
L GI DLHR+ +D +T+ S G+ RRVP+V D WF+SGSMPYA +H+PF+N +
Sbjct: 501 LKGIDAWFEDLHRDFLDKITLKSGDGGE--YRRVPDVLDVWFDSGSMPYASIHYPFENEK 558
Query: 289 DFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKR 348
F + FPADFI EG DQTRGWFY+ L I TALF QAP++N+I +G L + G+KMSKS
Sbjct: 559 -FKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLG 617
Query: 349 NYPDPMEPPFKNLIANGL---VLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVH--V 403
N DP++ A+ L V SSD + + ++ V E
Sbjct: 618 NVVDPLK-VINKYGADILRLYVASSDPWEDLRFSDE-----ILK------QVVEKYRKIR 665
Query: 404 WSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLY 463
W+ + + AN + + A D WI+S SL+E V + + Y +
Sbjct: 666 WNT---YRFLLTYANLDKFD-PLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFH 721
Query: 464 TVVPRLVLFIDN-LTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFL 522
V+ L FI L+NWY+R+ R RL E D + A +L L T+VR++AP+ P
Sbjct: 722 KVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHT 781
Query: 523 CEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIP 582
E +YQNL G E S+H + P+ + ID+ +E ++ ++ +VE +R+
Sbjct: 782 AEEIYQNL--PGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKK 839
Query: 583 IKYPLREAVVIHND 596
++ PL+E V+ +
Sbjct: 840 LRQPLKELVIGKSL 853
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 440 bits (1134), Expect = e-147
Identities = 147/358 (41%), Positives = 207/358 (57%), Gaps = 19/358 (5%)
Query: 1 MQSRLETLFKK-EEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGT 59
++ L++L+KK +E+ EIL+ F+G L G +Y F V ++ D YV E GT
Sbjct: 239 AEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF-----VNREIPIIADDYVDMEFGT 293
Query: 60 GVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIK 119
G VH AP GEDDY V + E + PVD G + F GL A K I++
Sbjct: 294 GAVHIAPAHGEDDYEVGKRHNL-----EFINPVDDDGTYNEEAPEFQGLKRFKARKKIVE 348
Query: 120 HLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEF 179
L E+ L+ ++HSYP CWRS TP+IY+A P WF+R++++ + LK +VP++
Sbjct: 349 LLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVPKW 408
Query: 180 VKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAEL--HRLSGISVEK 237
EKR+GNWL +DW ISR R+WG PIP W S D E+ GS+ EL R +E
Sbjct: 409 -GEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIEA 467
Query: 238 DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPAD 297
LHR++ D + G L + +V D WF SGS P++ L +PF N +F FPAD
Sbjct: 468 WLHRDAKDLL-----GKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKRFFPAD 522
Query: 298 FIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ EG DQTRGWFY ++V+ TAL AP++N++ +GLV + G+KMSKS N DP++
Sbjct: 523 MLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPLD 580
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 295 bits (757), Expect = 9e-95
Identities = 107/210 (50%), Positives = 132/210 (62%), Gaps = 41/210 (19%)
Query: 146 PLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGT 205
PLIY+A P WFIRV + LL+ N W+PE+VK RFGNWL RDW ISR RYWGT
Sbjct: 144 PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKN-RFGNWLENRRDWCISRQRYWGT 202
Query: 206 PIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEV 265
PIP+W +D E++ RRVP+V
Sbjct: 203 PIPVWYCEDCGEVLV---------------------------------------RRVPDV 223
Query: 266 FDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAP 325
D WF+SGSMPYAQLH+PF+N DF++ FPADFI EG DQTRGWFY+LL++STALF +AP
Sbjct: 224 LDVWFDSGSMPYAQLHYPFENE-DFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAP 282
Query: 326 FRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
++N+I +G VL +DG+KMSKS NY DP E
Sbjct: 283 YKNVIVHGFVLDEDGRKMSKSLGNYVDPQE 312
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 259 bits (665), Expect = 1e-75
Identities = 120/366 (32%), Positives = 184/366 (50%), Gaps = 46/366 (12%)
Query: 5 LETLFKKE--EEYEILDSFQGSTLKGLQYQ-PLFPYFKHVTSAFRVLTDTYVTEESGTGV 61
+E++ ++ E+YE+L +F+G L+GL Q P + S V+ +VT ++GTG+
Sbjct: 271 VESVLERFGWEDYEVLATFKGKELEGLVAQHPFY----DRDS--PVILGDHVTLDAGTGL 324
Query: 62 VHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHL 121
VH AP GEDDY V G+ E++ PVD G +T F GL+V A+ II+ L
Sbjct: 325 VHTAPGHGEDDYVVGQKYGL-----EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKL 379
Query: 122 KEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMN--QDLLKCNSDTYWVPEF 179
+E+ L+ + HSYP CWR+ P+I++A P WFI + + LK W+P +
Sbjct: 380 EEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAW 439
Query: 180 VKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVC----VGSIAELHRLSGISV 235
K R + + DW ISR R WG PIP++ + E+ + +A+L GI
Sbjct: 440 GK-NRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDA 498
Query: 236 --EKD----LHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRD 289
E D L E+ + + ++ D WF+SGS A L +
Sbjct: 499 WFELDAKELLPDEADE-------------YEKETDILDVWFDSGSSHAAVL------EQR 539
Query: 290 FDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRN 349
+ +PAD EG DQ RGWF + L+ S A +AP++ ++ +G + G+KMSKS N
Sbjct: 540 PELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGN 599
Query: 350 YPDPME 355
DP +
Sbjct: 600 VIDPQD 605
Score = 36.2 bits (85), Expect = 0.061
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 34/155 (21%)
Query: 439 DAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDN-LTNWYV-----RM-------NR 485
D W + L E + + Y + V +L F L+ +Y+ R+
Sbjct: 675 DRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLA 734
Query: 486 RRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIM 545
RR + AL + + L VR +AP F E ++Q +L G E S+
Sbjct: 735 RR--------SAQTALYHILEAL---VRWLAPILSFTAEEIWQ---YLPGEREESVFLEE 780
Query: 546 MPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVT 580
P+ D+E+ + + +R+ V
Sbjct: 781 WPEVPELADDEELLAKWEEL-------LEVRDEVN 808
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 235 bits (601), Expect = 6e-67
Identities = 142/595 (23%), Positives = 246/595 (41%), Gaps = 77/595 (12%)
Query: 46 RVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGG-----VITRDQEIVCPVDASGCFTA 100
++ D YV E GTG V P +DY V +I D I +A+G
Sbjct: 253 PIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRIN--EEAAG---- 306
Query: 101 PVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQ 160
F GL +A K I++ L+EQ LV KHS C R TP+ WF++V
Sbjct: 307 ---EFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVL 363
Query: 161 HMNQDLLKC--NSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEI 218
+ + L+ + +VPE + EKR+ +W+ RDW ISR +WG IP+W + +
Sbjct: 364 ELAKKALEAVKDGKIKFVPERM-EKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNV 422
Query: 219 VCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYA 278
V E + +++L ++ +V D WF S P++
Sbjct: 423 VVAEEEPEDPAAAEKCPKEELEQD--------------------EDVLDTWFSSSLWPFS 462
Query: 279 QLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQ 338
L +P + D +P D + G D W +++ L + PF+++ +GLV +
Sbjct: 463 TLGWP-EETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDE 521
Query: 339 DGQKMSKSKRNYPDPMEP-------PFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGR 391
G+KMSKSK N DP++ + +A+ D K + Y
Sbjct: 522 QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYR-------N 574
Query: 392 LCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIE 451
+W+ + +L N + A ++ D WI+S ++
Sbjct: 575 FL-------NKLWNAT-----RFVLMNLDDLGPDDLDLLAL---SLADRWILSRLNETVK 619
Query: 452 FVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFT 510
V + + YR L FI ++ +WY+ + + RL G + + A +L VL T
Sbjct: 620 EVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDT 677
Query: 511 MVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVE 570
++R++ P+ PF+ E ++Q L SIH P+ + +ID+E E+ + ++ ++
Sbjct: 678 LLRLLHPFMPFITEEIWQKLPG-----TESIHLASWPEVDEELIDEEAEKEFELLKEIIS 732
Query: 571 LGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDK 625
R +R + + PL+ VV+ + + E I N+ + +
Sbjct: 733 AIRNLRAEMNLSPSAPLK--VVLVGSEELEDRLEANEDDIKGLANLEELEILSPD 785
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 216 bits (552), Expect = 1e-66
Identities = 67/147 (45%), Positives = 98/147 (66%)
Query: 427 QYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRR 486
+ ++A S N++D WI+S SLI+ V +EM AY LYT V L+ FID LTNWY+R NR+
Sbjct: 37 KDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIRRNRK 96
Query: 487 RLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMM 546
R GE G D A +L +VL T+ R+MAP+TPF+ E +YQNLR G S+H +
Sbjct: 97 RFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDW 156
Query: 547 PQPNRGIIDQEIERSVKRMQSVVELGR 573
P+ + +ID+E+E +++ ++ +VELGR
Sbjct: 157 PEVDESLIDEELEEAMELVREIVELGR 183
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 233 bits (596), Expect = 7e-66
Identities = 119/377 (31%), Positives = 178/377 (47%), Gaps = 43/377 (11%)
Query: 3 SRLETLFKKE--EEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRV--LTDTYVTEESG 58
+ E++ KK E +E L +G L+ + P F V L +VT+++G
Sbjct: 286 ALAESVAKKAGVESFERLADVKGEDLEKIVCA--HPLDGLDGYEFEVPVLDGDHVTDDAG 343
Query: 59 TGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFT--AP------VSHFLGLYV 110
TG VH AP G +D+ V + G EI VD G +T AP V G
Sbjct: 344 TGFVHTAPGHGREDFNVWMKYGR----TEIPVTVDEDGFYTENAPGFGGARVIDDEGKKY 399
Query: 111 KDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQH-------MN 163
DA+K +I+ L E L++ G +KHSYP WRS P+I++ P WFI + +
Sbjct: 400 GDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLR 459
Query: 164 QDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIV---C 220
L T +VP + R N + + DW ISR R WG PIP++V++DGE ++
Sbjct: 460 SRALDAIDKTRFVPA-AGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEV 518
Query: 221 VGSIAELHRLSGISV--EKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYA 278
IA+ G + +E + P +V ++ D WF+SGS +A
Sbjct: 519 NARIADAFEEEGADAWFAEGA-KERF----LGGFHPNG-EFTKVTDILDVWFDSGST-HA 571
Query: 279 QLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQ 338
F ++R D +PAD EG DQ RGWF + L+ S +AP++ ++ +G L +
Sbjct: 572 ---FVLEDRPDLK--WPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDE 626
Query: 339 DGQKMSKSKRNYPDPME 355
G+KMSKS N P +
Sbjct: 627 KGEKMSKSLGNTVSPQD 643
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 219 bits (561), Expect = 2e-61
Identities = 152/603 (25%), Positives = 264/603 (43%), Gaps = 79/603 (13%)
Query: 47 VLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQ-EIVCPVDASGCFTAPVSHF 105
++ D YV E GTG V P +DY R E + +D G +
Sbjct: 255 IIADEYVDMEFGTGAVKVTPAHDFNDYEW------GKRHNLEFINILDEDGLLNENAGKY 308
Query: 106 LGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQD 165
GL +A K I++ LKE+ LV H+ CWRS T + WF++V+ +
Sbjct: 309 QGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADK 368
Query: 166 LLKC--NSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLW-VSDDGEEIVCVG 222
L+ + +VP+ + EKR+ NWLR +DW ISR WG IP+W + GE V
Sbjct: 369 ALEAAEEGEIKFVPKRM-EKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYV--- 424
Query: 223 SIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHF 282
+ E+ L + + L + +V D WF S P++ L +
Sbjct: 425 -----------AKEEPLPDD-------KTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGW 466
Query: 283 PFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQK 342
P D +D +P D + G D W ++ S AL Q PF+ + +GLV + G+K
Sbjct: 467 P-DETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRK 525
Query: 343 MSKSKRNYPDPMEPPFK-----------NLIANGLVLSSDGQKMSKSKKNYPDPMEVRGR 391
MSKS N DP++ K +L+ G ++ D +++ +S +N+ +
Sbjct: 526 MSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRV-ESARNFLN------- 577
Query: 392 LCPVHVWEPVHVWSVC-LILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLI 450
+W+ +L L++D E + E ++ D WI+S I
Sbjct: 578 ----------KLWNASRFVLM---NLSDDLE------LSGGEEKLSLADRWILSKLNRTI 618
Query: 451 EFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLF 509
+ VRK + YR L FI ++ +WY+ + + RL G A+ K A ++L VL
Sbjct: 619 KEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYN-GNEAEKKAARDTLYYVLD 677
Query: 510 TMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVV 569
+R++ P+ PF+ E ++Q+ + SI P + +D+E E++ + ++ ++
Sbjct: 678 KALRLLHPFMPFITEEIWQHFKEGA----DSIMLQSYPVVDAEFVDEEAEKAFELLKEII 733
Query: 570 ELGRVIRERVTIPIKYPLREAVVIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQKYG 629
R ++ IP PL + ++I+ +A+ + ++ I +N V +K +
Sbjct: 734 VSIRNLKAESNIPPNAPL-KVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVIEKPEVT 792
Query: 630 VSL 632
++
Sbjct: 793 EAV 795
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 205 bits (522), Expect = 6e-56
Identities = 156/564 (27%), Positives = 243/564 (43%), Gaps = 92/564 (16%)
Query: 3 SRLETLFKKEEEYEILDSFQGSTLKGLQYQ-PLFPYFKHVTSAFRVLTDTYVTEESGTGV 61
LE K + +L +F GS L+G +Y PL+ V V+ Y+T ESGTG+
Sbjct: 288 PALEA--KWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPV-----VIGGDYITTESGTGL 340
Query: 62 VHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYV-KDADKPIIKH 120
VH AP G++DY L G+ ++ PVD +G FT F GL V + + +++
Sbjct: 341 VHTAPGHGQEDYITGLKYGL-----PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEA 395
Query: 121 LKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFV 180
L E L+ + H YP+ WR+ P I++A WF V+ Q L W+P
Sbjct: 396 LDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA-Q 454
Query: 181 KEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIV----CVGSIAELHRLSGISVE 236
E R + DW ISR R WG PIP++ + +E + + + + G
Sbjct: 455 GENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAW 514
Query: 237 KDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPA 296
+ V+ + R + + D WF+SGS L +PA
Sbjct: 515 WYM---DVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL------GSREGLSYPA 565
Query: 297 DFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEP 356
D EG DQ RGWF + L+ S A +AP+++++ +G VL + G KMSKS N DP
Sbjct: 566 DLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPR-- 623
Query: 357 PFKNLIANGLVLSSDGQKMSKSKKNY-PDPMEVRGRLCPVHVWEPVHVWSV--------- 406
LV+ +G K K + Y D + RL W V SV
Sbjct: 624 ---------LVI--EGGKNQKQEPAYGADVL----RL-----W----VASVDYTGDVLIG 659
Query: 407 CLILKE------------KVLLAN--DAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEF 452
ILK+ + LL N D + + Y + +D + + E+++
Sbjct: 660 PQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPS----IDKYALFQLENVVNE 715
Query: 453 VRKEMAAYRLYTVVPRLVLF-IDNLTNWYVRMNRRRLKGEGGPAD-----CKVALNSLTK 506
+ + Y+ + + L F I +L+N+Y+ + + RL GG C+ L +
Sbjct: 716 IEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRL-YVGGTTSFTRRSCQTVLAAH-- 772
Query: 507 VLFTMVRVMAPYTPFLCEHLYQNL 530
L +++R +AP P L E +QNL
Sbjct: 773 -LLSLLRAIAPILPHLAEDAWQNL 795
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 178 bits (453), Expect = 3e-47
Identities = 139/564 (24%), Positives = 227/564 (40%), Gaps = 97/564 (17%)
Query: 92 VDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKA 151
+D G T GL +++A K I++ LK L +KH+ FC R DTPL
Sbjct: 295 IDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILV 354
Query: 152 VPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLRE-ARDWAISRNRYWGTPIPLW 210
WFI+V + ++LL+ + W PE ++ R NW+ DW ISR RY+GTPIP+W
Sbjct: 355 TRQWFIKVLDLKEELLERGKEINWYPEHMR-VRLENWIEGLNWDWCISRQRYFGTPIPVW 413
Query: 211 VSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVD-SVTIPSVRP----GKPPLRRVPEV 265
D + + + E+DL VD + P G P +V
Sbjct: 414 YCKDCGHPI----LPD---------EEDL---PVDPTKDEPPGYKCPQCGSPGFEGETDV 457
Query: 266 FDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGW-FYTLLVISTALFKQA 324
D W S P + D F+ FP D +G D R W FYT+L
Sbjct: 458 MDTWATSSITPLIVTGWERDEDL-FEKVFPMDLRPQGHDIIRTWLFYTIL---------- 506
Query: 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPD 384
R + G + P+KN++ +G+VL DG+KMSKSK N
Sbjct: 507 --RAYLLTG---------------------KLPWKNIMISGMVLDPDGKKMSKSKGNVVT 543
Query: 385 PMEVRGRLCPVHVWEPVHVWSVCLIL------KEKVL---------LANDAEEKLSFQYN 429
P E+ + + + V W+ L EK + L N + L F +
Sbjct: 544 PEELLEK----YGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSAD 599
Query: 430 ---EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-----DNLTNWYV 481
+ +D WI++ ++E + + Y + + F D+ Y+
Sbjct: 600 PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDD----YL 655
Query: 482 RMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSI 541
+ + R GE + K A +L VL T++R++AP+ PF+ E ++ L S+
Sbjct: 656 ELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY------GGSV 709
Query: 542 HFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQ 601
H P+P+ +ID+E E + + ++ R + + + PL++ V L+
Sbjct: 710 HRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEAGLSLNAPLKKVEVYGPAD--LE 767
Query: 602 EIRTLESYILQELNVRTVTFSTDK 625
+ E + N+ +
Sbjct: 768 LLEAAEEDLKAAGNIEELELVEGD 791
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 152 bits (387), Expect = 9e-41
Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 19/218 (8%)
Query: 140 CWRSDTPLIYKAVPSWFIRVQHMNQDLLKC--NSDTYWVPEFVKEKRFGNWLREARDWAI 197
C RS + P WF++V+ + + L+ D +VPE + EKR+ NWL RDW I
Sbjct: 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERM-EKRYENWLENIRDWCI 214
Query: 198 SRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKP 257
SR +WG IP W DG V V + G
Sbjct: 215 SRQLWWGHRIPAWYCKDGGHWV-VAREEDEAIDKAAPEACV--------------PCGGE 259
Query: 258 PLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVIS 317
L++ +V D WF S P++ L +P + +D +P + G D W +++
Sbjct: 260 ELKQDEDVLDTWFSSSLWPFSTLGWP-EETKDLKKFYPTSLLVTGHDIIFFWVARMIMRG 318
Query: 318 TALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
L + PF+ + +GLV +DG+KMSKS N DP++
Sbjct: 319 LKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLD 356
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 137 bits (347), Expect = 4e-36
Identities = 69/215 (32%), Positives = 87/215 (40%), Gaps = 62/215 (28%)
Query: 147 LIYK------AVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRN 200
LIY+ WF + + LLK VPE VK R WL DWAISR
Sbjct: 128 LIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVK-NRMEAWLESLLDWAISRQ 186
Query: 201 RYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLR 260
RYWGTP +P
Sbjct: 187 RYWGTP------------------------------------------LP---------- 194
Query: 261 RVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTAL 320
+VFD WF+SG P L +P + F D +PAD+ G D RGW + + AL
Sbjct: 195 --EDVFDVWFDSGIGPLGSLGYPEEKE-WFKDSYPADWHLIGKDILRGWANFWITMLVAL 251
Query: 321 FKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
F + P +NL+ +G VL + GQKMSKSK N DP +
Sbjct: 252 FGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSD 286
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 133 bits (337), Expect = 2e-32
Identities = 125/542 (23%), Positives = 215/542 (39%), Gaps = 66/542 (12%)
Query: 58 GTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPI 117
GTG V P +D+ V G+ E++ + G TA GL +A K +
Sbjct: 283 GTGAVKVTPAHDFNDFEVGKRHGL-----EMITVIGPDGRMTAEAGPLAGLDRFEARKEV 337
Query: 118 IKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKC--NSDTYW 175
+ L EQ A C RS T L W++R++ + + ++ T +
Sbjct: 338 KRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRF 397
Query: 176 VPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISV 235
+PE W+R DW ISR +WG IP W DG V
Sbjct: 398 IPEQWTNTYMA-WMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVA--------------- 441
Query: 236 EKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFP--FDNRRDFDDR 293
RE+ ++ + GK LR+ +V D WF SG P++ + +P D R F
Sbjct: 442 -----RETPEACST----CGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTF--- 489
Query: 294 FPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDP 353
+P + G D W ++++ + PFR + + +V + GQKMSK+K N DP
Sbjct: 490 YPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDP 549
Query: 354 ME--PPFKNLIANGL-----VLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSV 406
+ + A+ L L++ G+ + +K + +E +W+
Sbjct: 550 LVITEQYG---ADALRFTLAALTAQGRDIKLAK----ERIEGYRAFAN-------KLWNA 595
Query: 407 CLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVV 466
+ L N + + + A + D WI++ + + + + A+R
Sbjct: 596 -----SRFALMNLSGYQER-GEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAA 649
Query: 467 PRLVLFI-DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEH 525
+ F+ L +WY+ + + L E A + L L T R++ P+ PF+ E
Sbjct: 650 NAVYAFVWHELCDWYIELAKEALASEDPEAR-RSVQAVLVHCLQTSYRLLHPFMPFITEE 708
Query: 526 LYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKY 585
L+ LR G + + P +G D+ E + + + +++ R IR + IP K
Sbjct: 709 LWHVLRAQVGASAWADSVLAAEYPRKGEADEAAEAAFRPVLGIIDAVRNIRGEMGIPWKV 768
Query: 586 PL 587
L
Sbjct: 769 KL 770
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 128 bits (324), Expect = 1e-30
Identities = 137/612 (22%), Positives = 224/612 (36%), Gaps = 106/612 (17%)
Query: 47 VLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFL 106
+ D V E GTG V P +DY + + + G F
Sbjct: 301 IADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNL-----PFINIFTLDGKINENGGEFA 355
Query: 107 GLYVKDADKPIIKHLKEQSRLVSAGSVKHSY--PFCWRSDTPLIYKAVPSWFIRVQHMNQ 164
G++ D + I + LKE L V + P C RS + +P W++ + M +
Sbjct: 356 GMHRFDCRRKIEEELKEMGLLR--DKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAK 413
Query: 165 DLLKC--NSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLW--------VSDD 214
++ N + +P E + +WL +DW ISR +WG IP +
Sbjct: 414 RAVEAVRNGELKIIPSS-HENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPS 472
Query: 215 GEEIVCVG-SIAELHRLS---------GISVEKDLHRESVDSVTIPSVRPGKPPLRRVPE 264
EE V S E + +E+D +
Sbjct: 473 DEEPWVVARSEEEALEKAKKKFGLSEEDFELEQD------------------------ED 508
Query: 265 VFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQA 324
V D WF SG P++ L +P D D FP + G D W ++++S L +
Sbjct: 509 VLDTWFSSGLFPFSTLGWP-DQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKL 567
Query: 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLVLSSDGQKMSKS------ 378
PF+ + + +V G+KMSKSK N DP+E + G+ L QK+ +
Sbjct: 568 PFKTVFLHAMVRDSQGEKMSKSKGNVIDPLE------VIEGISLQDLNQKLYEGNLPEKE 621
Query: 379 --------KKNYPDPMEV---------------RGRLCPVHVWEPV-------HVWSVCL 408
KK +P+ + +GR + + V +W+
Sbjct: 622 IKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVK 681
Query: 409 ILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPR 468
K+L + F+ N E S D WI+ I+ V + Y
Sbjct: 682 FALMKLLKDFNLPNSTLFKPNNVE-SLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQA 740
Query: 469 LVLF-IDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLY 527
F + L + Y+ + + RL + + A + L VL +R++ P PF+ E LY
Sbjct: 741 TYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELY 800
Query: 528 QNLRHLTGRLERSIHFIMM---PQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIK 584
Q L L +S I + PQPN G ++ ++ +K + S+V+ R + + IP K
Sbjct: 801 Q---RLPNYLRKSES-ISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNK 856
Query: 585 YPLREAVVIHND 596
V +
Sbjct: 857 TKPDCYVTAKDA 868
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 121 bits (305), Expect = 2e-28
Identities = 131/556 (23%), Positives = 226/556 (40%), Gaps = 85/556 (15%)
Query: 47 VLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGG-----VITRDQEIVCPVDASGCFTAP 101
++ D YV ++ GTGV+ +P +DY + G V+ +D
Sbjct: 311 IIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD--------------GT 356
Query: 102 VSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDT---PLIYKAVPSWFIR 158
++ GLY +A + + L+E V P R PL+ K WF+
Sbjct: 357 LNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK---QWFVT 413
Query: 159 VQHMNQDLLKC--NSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLW--VSDD 214
++ + + LK N + +PE EK + +WL +DW ISR +WG IP+W V D
Sbjct: 414 MEPLAEKALKAVENGELTIIPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKD 472
Query: 215 GEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGS 274
EE V AE + ++ + + V+ + + P+V D WF S
Sbjct: 473 CEEDYIVARSAE----EALEKAREKYGKDVE-------------IYQDPDVLDTWFSSAL 515
Query: 275 MPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGL 334
P++ L +P + DF +P + G D W ++++ PF + +GL
Sbjct: 516 WPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGL 575
Query: 335 VLAQDGQKMSKSKRNYPDPMEPPFKNLIANGL----VLSSDGQKMS------KSKKNYPD 384
+ G+KMSK+ N DP++ K + L L + GQ ++ S K + +
Sbjct: 576 IRDSQGRKMSKTLGNVIDPLD-TIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTN 634
Query: 385 PMEVRGR--LCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWI 442
+ G+ L + W L K F E+ S + + W+
Sbjct: 635 KLWNAGKFVLQNLPSQSDTSAWEHILACK--------------FDKEESLLSLPLPECWV 680
Query: 443 ISFSESLIEFVRKEMAAYRLYTVVPRLV--LFIDNLTNWYVRMNRRRLKGEGGPADCKVA 500
+S LI+ V Y + V R + F + +WY+ ++ RL G + A
Sbjct: 681 VSKLHELIDSVTTSYDKY-FFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRA 739
Query: 501 LNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIER 560
L V +++++ P+ PF+ E L+Q L + R I+ P P + + +
Sbjct: 740 QAVLLYVFENILKLLHPFMPFVTEELWQALPY------RKEALIVSPWPQTSL--PKDLK 791
Query: 561 SVKRMQSVVELGRVIR 576
S+KR +++ L R IR
Sbjct: 792 SIKRFENLQSLTRAIR 807
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 104 bits (262), Expect = 2e-26
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 439 DAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDN-LTNWYVRMNRRRLKGEGGPADC 497
D WI+S LI+ V + YR T L F N L++WY+ +++ RL GE +D
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSD- 59
Query: 498 KVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQE 557
+ A L +VL T++R++AP+ PF+ E L+Q L + SIH P+P+ D+E
Sbjct: 60 RSAQTVLYEVLETLLRLLAPFMPFITEELWQKLGK-----KESIHLAPWPEPDEVEEDEE 114
Query: 558 IERSVKRMQSVVELGRVIRERVTIPIKYPLREAV 591
+E + Q +V+ R +R + I PL +
Sbjct: 115 LEEEFELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 112 bits (284), Expect = 1e-25
Identities = 86/342 (25%), Positives = 128/342 (37%), Gaps = 98/342 (28%)
Query: 47 VLTDTYVTEESGTGVV-----HQAPYFGED--DYRVCLAGG-----VITRDQEIVCPVDA 94
++ D YV E GTG V H D D+ V ++ D
Sbjct: 257 IIADEYVDPEFGTGAVKITPAH-------DPNDFEVGKRHNLPMINIMDED--------- 300
Query: 95 SGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDT---PLIYKA 151
G + GL +A K I+ L+E LV HS RS P +
Sbjct: 301 -GTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSD- 358
Query: 152 VPSWFIRVQHMNQDLLKC--NSDTYWVPE-FVKEKRFGNWLREARDWAISRNRYWGTPIP 208
WF++++ + + L+ N + +VPE + EK + +W+ +DW ISR +WG IP
Sbjct: 359 --QWFVKMKPLAKPALEAVENGEIKFVPERW--EKTYFHWMENIQDWCISRQLWWGHRIP 414
Query: 209 LWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDC 268
W +DGE V VG R K L + +V D
Sbjct: 415 AWYDEDGE--VYVGREEPEAR-------------------------EKALLTQDEDVLDT 447
Query: 269 WFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLV----I-------- 316
WF S P++ L +P + D +P +LV I
Sbjct: 448 WFSSALWPFSTLGWP-EKTEDLKRFYPTS---------------VLVTGFDIIFFWVARM 491
Query: 317 ---STALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
Q PF+++ +GLV + G+KMSKSK N DP++
Sbjct: 492 IMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLD 533
Score = 63.6 bits (156), Expect = 2e-10
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 17/216 (7%)
Query: 416 LANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-D 474
L N + + E S D WI+S + V + + YR L FI +
Sbjct: 582 LMNLEGADVGELPDPEELSL--ADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWN 639
Query: 475 NLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLT 534
+WY+ + + L+ A +L VL ++R++ P+ PF+ E L+Q L L
Sbjct: 640 EFCDWYLELAKPVLQEAAKRA----TRATLAYVLEQILRLLHPFMPFITEELWQKLAPLG 695
Query: 535 GRLERSIHFIM---MPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAV 591
IM P+ + ID+ E + ++ ++ R IR + IP L +
Sbjct: 696 IEES-----IMLAPWPEAD-EAIDEAAEAEFEWLKELITAIRNIRAEMNIPPSKKL-PLL 748
Query: 592 VIHNDAQCLQEIRTLESYILQELNVRTVTFSTDKQK 627
+ DA+ + E+YI + + ++ D ++
Sbjct: 749 LKGADAEDRARLEANEAYIKRLARLESLEILADDEE 784
Score = 50.9 bits (123), Expect = 2e-06
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 355 EPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
+ PFK++ +GLV G+KMSKSK N DP+++
Sbjct: 501 QVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDL 534
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 86.5 bits (214), Expect = 2e-17
Identities = 93/353 (26%), Positives = 148/353 (41%), Gaps = 51/353 (14%)
Query: 58 GTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPI 117
GTG V P +D+ V G + I D + S F G+ A + +
Sbjct: 378 GTGAVKITPAHDPNDFEV----GKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAV 433
Query: 118 IKHLKEQSRLVSAGSVKHSYPFCWRSD---TPLIYKAVPSWFIRVQHMNQDLLKC----- 169
I+ L+++ A + + C R++ P+I P WF+ M + L
Sbjct: 434 IEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIK---PQWFVNCSSMAKQALDAAIDGE 490
Query: 170 NSDTYWVP-EFVKEKRFGNWLREARDWAISRNRYWGTPIPLW---VSDDGEEIVCVGSIA 225
N ++P +++ E + WL RDW ISR +WG IP W + DD + +GS
Sbjct: 491 NKKLEFIPKQYLAEWK--RWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKE--LGSYN 546
Query: 226 ELHRLSGISVEKDLHRESVDSVTIPSVRPGKP-PLRRVPEVFDCWFESGSMPYAQLHFPF 284
+ H + + E D E+ PGK L + P+V D WF SG P + L +P
Sbjct: 547 D-HWVVARN-ESDALLEASQKF------PGKKFELSQDPDVLDTWFSSGLFPLSVLGWP- 597
Query: 285 DNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMS 344
D+ D +P + G D W ++++ L PFR + + ++ G+KMS
Sbjct: 598 DDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMS 657
Query: 345 KSKRNYPDPMEP-------------PFKNLIANGLVLSSDGQKMSKSKKNYPD 384
KS N DP+E NL LV++ +GQ KK++P+
Sbjct: 658 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQ-----KKDFPN 705
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 63.0 bits (154), Expect = 6e-12
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 426 FQYNEAEGSTNIMDAWIIS-FSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRM 483
+ E S ++ D WI+S ++ +E V + + YR L F ++ +WY+ +
Sbjct: 31 DEPEEDPESLSLADRWILSRLNK-TVEEVTEALENYRFSEAATALYEFFWNDFCDWYLEL 89
Query: 484 NRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530
+ RL GE K A +L VL T++R++ P+ PF+ E L+Q L
Sbjct: 90 VKPRLYGEDEEEK-KAARATLYYVLETILRLLHPFMPFITEELWQRL 135
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 66.4 bits (163), Expect = 3e-11
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 47/231 (20%)
Query: 359 KNLIANGLVLSSDGQKMSKSKKN----------Y-PDPMEVRGRLCPVHVWEPVHV--WS 405
+ ++ NG VL +G+KMSKSK N Y D + RL E + W
Sbjct: 563 RGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVV----RLYLTSSAELLQDADWR 617
Query: 406 VCLI------LKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAA 459
+ L+ LA + E E +D W++S +I+ + M +
Sbjct: 618 EKEVESVRRQLERFYELAKELIEI------GGEEELRFIDKWLLSRLNRIIKETTEAMES 671
Query: 460 YRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYT 519
++ V + N WY+R L +VL +R++AP+T
Sbjct: 672 FQTRDAVQEAFYELLNDLRWYLRR------VGEANNK------VLREVLEIWIRLLAPFT 719
Query: 520 PFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVE 570
P L E L+ L E + P+P+ ID+E E + + ++ ++E
Sbjct: 720 PHLAEELWHKLGG-----EGFVSLEKWPEPDESKIDEEAELAEEYVKRLIE 765
Score = 29.5 bits (67), Expect = 7.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 176 VPEFVKEKRFGN---WLREARDWAISRNRYWGTPIP 208
+PE + K F N WL+ D A +R R GT +P
Sbjct: 422 IPEEYR-KEFENTIDWLK---DRACARRRGLGTRLP 453
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 65.4 bits (160), Expect = 6e-11
Identities = 58/212 (27%), Positives = 79/212 (37%), Gaps = 54/212 (25%)
Query: 175 WVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGIS 234
+ + + F N+ R RDW SR RYWG PIP+ + + +V V
Sbjct: 404 GLVKRGLGQWFVNY-RL-RDWLKSRQRYWGEPIPI-IHCEDCGVVPVP------------ 448
Query: 235 VEKDLHRESVDSVTIPSVR---PGKPPLRRVPE----------------VFDCWFESGSM 275
E L V +P PL E D + +S
Sbjct: 449 -EDWL------PVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWY 501
Query: 276 P--YAQLHF----PFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALF------KQ 323
+ F PFD R +F+ +P D GI+ ALF K
Sbjct: 502 YLRFFDPIFLGELPFD-REEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKD 560
Query: 324 APFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
PF+ LI G+VL ++G+KMSKSK N DP E
Sbjct: 561 EPFKKLITQGMVLGEEGEKMSKSKGNVVDPEE 592
Score = 63.1 bits (154), Expect = 3e-10
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 36/190 (18%)
Query: 357 PFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVR-------GRLCPVHV--------WEPV 401
PFK LI G+VL +G+KMSKSK N DP E RL + W
Sbjct: 562 PFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSES 621
Query: 402 HVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYR 461
V L+ L + EKL + + +G D W++ I+ V ++ A +
Sbjct: 622 GVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKE---DRWLLH---RTIKKVTEDFEARQ 675
Query: 462 LY-TVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTP 520
+ T + L+ ++ L Y+R + EG + AL T VR++AP+ P
Sbjct: 676 TFNTAIAALMELLNALR-KYLR------RTEGDRKVLREALE-------TWVRLLAPFAP 721
Query: 521 FLCEHLYQNL 530
+ E L++ L
Sbjct: 722 HIAEELWEEL 731
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 64.8 bits (158), Expect = 9e-11
Identities = 54/229 (23%), Positives = 77/229 (33%), Gaps = 55/229 (24%)
Query: 193 RDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSV 252
RDW SR RYWG PIP+ +DG G + E+DL + V
Sbjct: 413 RDWGFSRQRYWGEPIPIIHCEDG------GVVPVP--------EEDLPVILPEDVVYDGD 458
Query: 253 RPGKPPLRRVPE------------------VFDCWFESG--SMPYAQLHFP--FDNRRDF 290
G PL R+PE D + S + Y ++
Sbjct: 459 --GGSPLSRIPEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKA 516
Query: 291 DDRFPADFIAEGIDQT-------RGW---FYTLLVISTALFKQAPFRNLIANGLVLAQDG 340
+ P D GI+ R + + ++T + PF+ LI G+VL
Sbjct: 517 EYWLPVDLYIGGIEHAILHLLYARFFHKFLRDIGYVNT----KEPFKKLINQGMVLGF-- 570
Query: 341 QKMSKSKRNYPDPM-EPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
K A G ++ +KMSKSK N DP E+
Sbjct: 571 YYPPNGKVPADVLTERDEKGKDKAGGELVYVGYEKMSKSKGNGIDPQEI 619
Score = 34.3 bits (79), Expect = 0.26
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 495 ADCKVALNSLTKV---------LFTMVRVMAPYTPFLCEHLYQNLRHLTG 535
+ LN L K L V V++P+ P L E L++ L
Sbjct: 713 SAMMELLNKLYKAKKEALMLEYLKGFVTVLSPFAPHLAEELWEKLGSEPF 762
Score = 34.0 bits (78), Expect = 0.28
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 140 CWRSDTPLIYKAVPSWFIRVQHMNQDLLK-CNSDTYWVPEFVKEKRFGNWL 189
WR DTP+ K + WF+++ ++LL +W PE VKE + NW+
Sbjct: 173 SWRGDTPVEKKELKQWFLKITAYAEELLNDLEELDHW-PESVKEMQ-RNWI 221
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 59.5 bits (144), Expect = 5e-09
Identities = 100/493 (20%), Positives = 187/493 (37%), Gaps = 84/493 (17%)
Query: 142 RSDTPLIYKAVP-SWFIRV--QHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAIS 198
R T I K V WF++ + + +C +PE VK F + +DWA
Sbjct: 432 RCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNA-FEGKIDWLKDWACC 490
Query: 199 RNRYWGTPIPL---WVSD---DGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSV 252
R GT +P W+ + D + +IA H L+ + E +
Sbjct: 491 RRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIA--HYLN----KDYYGNEQMT------- 537
Query: 253 RPGKPPLRRVPEVFDCWF-ESGSMPYAQLHFPF--DNRRDFDDRFPADFIAEGIDQTRGW 309
E FD F G + + P RR+F+ +P D+ G D
Sbjct: 538 ----------DEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNH 587
Query: 310 FYTLLVISTALFKQAPF-RNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANG--L 366
+ A+F + + R ++ NG V+ +G+KMSKSK N +E + A+ L
Sbjct: 588 LTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVL-TLEQAVEKFGADVARL 645
Query: 367 VLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSF 426
++ + + + W+ V L L+ A + ++ +
Sbjct: 646 YIADAAETVQDAD------------------WKESEVEGTILRLERLYEFAEEITKESNL 687
Query: 427 QYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRR 486
+ E T+ +D W+ S + I+ + M ++ V + + +WY R
Sbjct: 688 ETGE---ETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRR---- 740
Query: 487 RLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMM 546
+G D L + L T ++++AP+ P E +++ + + E +
Sbjct: 741 --RGGVNHKDV------LARYLETWIKLLAPFAPHFAEEMWEEVGN-----EGFVSLAKF 787
Query: 547 PQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHND--AQCLQEIR 604
P+ + +D+E+E + + ++++V R I+E I P R + D +QCL+ +
Sbjct: 788 PEASEPAVDKEVEAAEEYLRNLV---RDIQEIAKIDASKPKRVYLYTSEDWKSQCLKIVA 844
Query: 605 TLESYILQELNVR 617
L E +
Sbjct: 845 ELFGEDTGEDMKK 857
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 51.5 bits (124), Expect = 1e-06
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 125 SRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLL---KCNSDTYWVPEFVK 181
R + + + P C S + +F R+ LL + N D W
Sbjct: 162 GRTLDPTELIN--PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRN 219
Query: 182 EKRFGNWLREA-RDWAISRNR-YWGTPIP 208
E N+L+E +D +I+R WG P+P
Sbjct: 220 EVL--NFLKEGLKDLSITRTDLDWGIPVP 246
Score = 39.6 bits (93), Expect = 0.005
Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 38/205 (18%)
Query: 355 EPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLI----- 409
P + A+G + +GQKMSKS+ N DP E+ + V L
Sbjct: 315 LPLPTRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQY-------GVDALRYYLARELPE 366
Query: 410 ----------LKEKV--LLAND----AEEKLSFQYN-------EAEGSTNIMDAWIISFS 446
E+V LAN A L F A D +++ +
Sbjct: 367 GSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALA 426
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRR-RLKGEGGPADCKVALNSLT 505
+E V + M Y + ++ N Y+ +L E L
Sbjct: 427 REALEAVAEAMEKYEFRKALEEIMALAS-RANKYIDEQAPWKLAKEDKRERLATVLYLAL 485
Query: 506 KVLFTMVRVMAPYTPFLCEHLYQNL 530
+++ + ++ P+ P E ++ L
Sbjct: 486 ELVRVLAILLYPFMPETAEKIWDQL 510
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 48.7 bits (116), Expect = 1e-05
Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 67/248 (27%)
Query: 193 RDWAISRNRYWGTPIPLWVSDDGEEIVCVG------SIAELHRLS-GISVEKDLHRESVD 245
RDW +R RYWG PIP+ +D E V V ++ EL + + E L + +V
Sbjct: 505 RDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAK-AVS 563
Query: 246 SVTIPSVRPGKPPLRRVPEVFDCWFESGSMP--------YAQLHFPFDNRRDFD---DRF 294
V GKP R E+ +MP Y + P ++ D +++
Sbjct: 564 WVNTVDPSSGKPARR----------ETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKY 613
Query: 295 --PADFIAEGIDQ-------TRGW---FYTLLVISTALFKQAPFRNLIANGLVLA----- 337
P D G + R W Y + V+ST + PF+ L+ G++L
Sbjct: 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVST----KEPFQCLVNQGMILGEVEYT 669
Query: 338 ----QDGQKMS---KSKRNYPDPMEPPFKNLIANG--LVLSSD--------GQKMSKSKK 380
DG+ +S + + P + +I +G VL D KMSKS+
Sbjct: 670 AFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRG 729
Query: 381 NYPDPMEV 388
N +P +V
Sbjct: 730 NVVNPDDV 737
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 43.7 bits (104), Expect = 2e-05
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 428 YNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRR 487
+D W++S LI+ + + + + + N +WY R
Sbjct: 26 TEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWY-----RE 80
Query: 488 LKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530
G G D L + + R++AP+ P L E ++ L
Sbjct: 81 RGGAGMNKDL------LRRFIEVWTRLLAPFAPHLAEEIWHEL 117
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 44.8 bits (107), Expect = 3e-05
Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 438 MDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRRRLKGEGGPAD 496
+D + + LI+ VR+ Y + V L F +L+ +Y+ + + RL + D
Sbjct: 45 LDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCD--AKD 102
Query: 497 CKVALNSLT---KVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGI 553
++ T +L +++++AP PF E ++++L + E S+ P+
Sbjct: 103 SLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG--EKKEESVFLEDWPELPEEW 160
Query: 554 IDQEIERSVKRMQSVVELGRVIRERVT 580
D+E+E ++ + + +R+ V
Sbjct: 161 KDEELE---EKWEKL----LALRDEVN 180
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 46.2 bits (111), Expect = 5e-05
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 193 RDWAISRNRYWGTPIP 208
RDW ISR RYWG PIP
Sbjct: 416 RDWGISRQRYWGEPIP 431
Score = 38.5 bits (91), Expect = 0.011
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Query: 357 PFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
PFK L+ G+V KMSKSK N DP ++
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDI 584
Score = 35.1 bits (82), Expect = 0.13
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
PF+ L+ G+V KMSKSK N DP +
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDD 583
Score = 34.7 bits (81), Expect = 0.19
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 17/55 (30%)
Query: 501 LNSLTK------------VLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHF 543
+N+L K L +VR++AP+ P L E L++ L H E SI
Sbjct: 680 VNALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH-----EGSIAN 729
Score = 29.7 bits (68), Expect = 5.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 140 CWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSD-TYWVPEFVKE-KRFGNW 188
CWR P+ K + WF+++ +LL W PE VK +R NW
Sbjct: 175 CWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDW-PEKVKTMQR--NW 222
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 44.2 bits (105), Expect = 1e-04
Identities = 52/216 (24%), Positives = 69/216 (31%), Gaps = 74/216 (34%)
Query: 155 WFIRVQH--MNQDLLKC-NSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWV 211
WF++ + LLK W PE V+ NW+ SR RYWGTPIP W
Sbjct: 132 WFLKYSETEWKEKLLKDLEKLDGW-PEEVR-AMQENWI------GCSRQRYWGTPIP-W- 181
Query: 212 SDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSV------TIP--SVRPGKPPLRRVP 263
D DS T +P + L
Sbjct: 182 -------------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDR 216
Query: 264 EVFDCWF----ESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTA 319
E F+ W+ G +A H + RF + + T
Sbjct: 217 EEFEYWYPVDIYIGGKEHAPNHLLY-------SRFNHKALFDEGLVTDEPP--------- 260
Query: 320 LFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ LI G+VL +G+KMSKSK N P E
Sbjct: 261 -------KGLIVQGMVLL-EGEKMSKSKGNVVTPDE 288
Score = 44.2 bits (105), Expect = 1e-04
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 357 PFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P K LI G+VL +G+KMSKSK N P E
Sbjct: 259 PPKGLIVQGMVLL-EGEKMSKSKGNVVTPDEA 289
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 44.2 bits (105), Expect = 2e-04
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA-RDWA 196
P S + K +F R+ LL+ + P + +WL+E +D +
Sbjct: 167 PRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLS 226
Query: 197 ISRNRYWGTPIP 208
I+R+ WG P+P
Sbjct: 227 ITRDLDWGIPVP 238
Score = 32.2 bits (74), Expect = 0.77
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPME 387
P + A+G + +G KMSKS+ N DP E
Sbjct: 307 PLPTQVFAHGWLTV-EGGKMSKSRGNVVDPDE 337
Score = 31.1 bits (71), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 327 RNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ A+G + +G KMSKS+ N DP E
Sbjct: 310 TQVFAHGWLTV-EGGKMSKSRGNVVDPDE 337
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 42.1 bits (100), Expect = 5e-04
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 153 PSWFIRVQHMNQDL---LKCNSDTYWVPEFVKEKRFGNWLREA-RDWAISR-NRYWGTPI 207
+F R+ L L+ N D W E +WL+E +D +I+R WG P+
Sbjct: 138 EHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVL--SWLKEGLKDLSITRDLFDWGIPV 195
Query: 208 PL 209
PL
Sbjct: 196 PL 197
Score = 32.1 bits (74), Expect = 0.85
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDP 385
P ++A+G + +G+KMSKS+ N DP
Sbjct: 263 PLPTRIVAHGYLTV-EGKKMSKSRGNVVDP 291
Score = 31.3 bits (72), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 327 RNLIANGLVLAQDGQKMSKSKRNYPDP 353
++A+G + +G+KMSKS+ N DP
Sbjct: 266 TRIVAHGYLTV-EGKKMSKSRGNVVDP 291
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 438 MDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADC 497
D +++ + I+ + A T V L F N NWY+ + L+ E
Sbjct: 40 ADRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NELNWYLDELKPALQTEELREAV 98
Query: 498 KVALNSLTKVLFTMVRVMAPYT 519
L + L + +++AP+T
Sbjct: 99 LAVLRA---ALVVLTKLLAPFT 117
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 38.1 bits (89), Expect = 0.016
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRV---QHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA-R 193
P C + +F R+ + ++ ++ N ++ VK K NWL+ +
Sbjct: 167 PRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNK-AQNWLKGGLK 225
Query: 194 DWAISR-NRYWGTPIPL 209
D AI+R YWG P+P
Sbjct: 226 DLAITRDLVYWGIPVPN 242
Score = 28.9 bits (65), Expect = 9.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 326 FRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ ++G + +G KMSKS N DP +
Sbjct: 312 PTQVFSHGYLTV-EGGKMSKSLGNVVDPSD 340
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 37.1 bits (87), Expect = 0.031
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLK-CNSDTYWVPEFVKEKRFGNWLREA-RDW 195
P S + ++ +F+ + + L S W P + NWL+E +
Sbjct: 172 PRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTL--NWLKEGLKPR 229
Query: 196 AISRNRYWGTPIPL 209
AI+R+ WG P+P
Sbjct: 230 AITRDLDWGIPVPW 243
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 35.9 bits (84), Expect = 0.074
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGR 391
P K + A+G L KMSKSK N DP E+ R
Sbjct: 282 PLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVDR 316
Score = 29.8 bits (68), Expect = 5.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ + A+G L KMSKSK N DP E
Sbjct: 283 LPKKVFAHGWWLM-KDGKMSKSKGNVVDPEE 312
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 33.0 bits (76), Expect = 0.11
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 495 ADCKVALNS--LTKVLFTMVRVMAPYTPFLCEHLYQNL 530
K A ++ L + L T+V ++AP+ P + E L++ L
Sbjct: 80 YKKKDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 34.7 bits (81), Expect = 0.16
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLK--CNSDTYWVPEFVKEKRFGNWLREA-RD 194
P S + K +F ++ ++ LK P V K WL E +D
Sbjct: 170 PKSAISGATPVLKESEHFFFKLPRF-EEFLKEWITRSGELQPN-VANK-MKEWLEEGLQD 226
Query: 195 WAISRN-RYWGTPIP 208
W ISR+ Y+G IP
Sbjct: 227 WDISRDAPYFGFEIP 241
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 34.5 bits (80), Expect = 0.21
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 287 RRDFDDRFPAD--FIAEGIDQTRGWFYTLLVISTALFKQAPFR---NLIANG-LVLAQDG 340
F+ +PAD I G D R F+ V A A + A+G L L DG
Sbjct: 246 AELFNKYWPADVHLI--GKDILR--FHA--VYWPAFLMAAGLPLPKRVFAHGFLTL--DG 297
Query: 341 QKMSKSKRNYPDPME 355
+KMSKS N DP +
Sbjct: 298 EKMSKSLGNVIDPFD 312
Score = 34.1 bits (79), Expect = 0.24
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTY-WVPEFVKEKRFGNWLREA---- 192
C + P+ + S+F R+ QD L + Y P+F++ + E
Sbjct: 142 YRCPPTGAPVEWVEEESYFFRLSK-YQDKLL---ELYEANPDFIQPA---SRRNEVISFV 194
Query: 193 ----RDWAISRNRY-WGTPIP 208
+D +ISR + WG P+P
Sbjct: 195 KSGLKDLSISRTNFDWGIPVP 215
Score = 31.4 bits (72), Expect = 1.7
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPME 387
P K + A+G L+ DG+KMSKS N DP +
Sbjct: 282 PLPKRVFAHGF-LTLDGEKMSKSLGNVIDPFD 312
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 33.9 bits (79), Expect = 0.28
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 366 LVLSSDGQKMSKSKKNY 382
L+ DG+KM KS+ N
Sbjct: 224 LLTGLDGKKMGKSEGNA 240
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 33.8 bits (78), Expect = 0.30
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 360 NLIANGLVLSSDGQKMSKSKKNYPDPM--EVRGR--LCPVHVWE---PVHVWSVCLILKE 412
L N L G+ K P P+ EVRGR L + + E W +CL LKE
Sbjct: 307 KLAENAEKL---GEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKE 363
Query: 413 KVLLA 417
K LLA
Sbjct: 364 KGLLA 368
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 33.0 bits (76), Expect = 0.46
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 362 IANGLVLSSDGQKMSKSKKNY 382
+ L+ DG KMSKS+ N
Sbjct: 183 LTTPLLTGLDGGKMSKSEGNA 203
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 31.9 bits (73), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E +IE+ R+ MAAY+ PR++ F+D L
Sbjct: 392 EDIIEWCRERMAAYK----YPRIIEFVDEL 417
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 31.4 bits (72), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E LI + R+ +A Y+ VPR + F+D L
Sbjct: 472 EELIAYCREHLAKYK----VPRSIEFLDEL 497
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 31.2 bits (71), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 373 QKMSKSKKNYPDPMEVRGR--LCPVHV--WEPVHVWSVCLILKEKVLLA 417
+ + K P E+RG+ L + + V+ W +CL LKE LLA
Sbjct: 313 DGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLA 361
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 31.3 bits (72), Expect = 1.8
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E LI F R+ +AAY+ VPR V F D L
Sbjct: 429 EELIAFCRERLAAYK----VPRQVEFRDEL 454
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 30.6 bits (70), Expect = 2.0
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 364 NGLVLSSDGQKMSKSKKNY 382
G + DG+KMSKS N+
Sbjct: 165 TGHLTI-DGEKMSKSLGNF 182
Score = 30.6 bits (70), Expect = 2.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 314 LVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNY 350
+ S A + R + G + DG+KMSKS N+
Sbjct: 147 IAQSEAATGKPFARYWLHTGHLTI-DGEKMSKSLGNF 182
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 31.1 bits (71), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E +I + R+ MAAY+ PR+V F+D+L
Sbjct: 498 EEIIAWAREHMAAYK----YPRIVEFVDSL 523
>gnl|CDD|224270 COG1351, THY1, Predicted alternative thymidylate synthase
[Nucleotide transport and metabolism].
Length = 273
Score = 30.1 bits (68), Expect = 3.2
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 17/121 (14%)
Query: 416 LANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEM-----AAYRLYTV----- 465
L D E + N + + S +E V + +Y LY
Sbjct: 111 LDGDEFYVPFEPLLEDRAAFNDLCRAVDDLYSSKLEKVLDLLEKAYERSYELYKELLRSG 170
Query: 466 ----VPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVAL---NSLTKVLFTMVRVMAPY 518
R VL T V N R L+ + A L + + ++ + P
Sbjct: 171 IAREDARYVLPNATETRIVVTGNARSLQHFLSLRLSEHAQWEIRELAEAILEELKKVVPS 230
Query: 519 T 519
Sbjct: 231 V 231
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 30.2 bits (69), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 446 SESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E LI F R +A ++ VPR V F+D L
Sbjct: 307 EEELIAFCRGRLARFK----VPRYVRFVDEL 333
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 30.1 bits (69), Expect = 3.8
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 12/36 (33%)
Query: 364 NGLVLSSDGQKMSKSKKN----------YPDPMEVR 389
NG V +G+KMSKS N Y DP +R
Sbjct: 257 NGFVTV-NGEKMSKSLGNFFTIRDLLKKY-DPEVLR 290
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 30.3 bits (69), Expect = 3.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 317 STALFKQAPFRNL-IANGLVLAQDGQKMSKSKRN 349
S A PF + NG + DG+KMSKS N
Sbjct: 243 SEAATGVKPFAKYWMHNGFLN-IDGEKMSKSLGN 275
Score = 29.1 bits (66), Expect = 7.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 371 DGQKMSKSKKN---------YPDPMEVR 389
DG+KMSKS N DP +R
Sbjct: 265 DGEKMSKSLGNFITVRDLLKKYDPEVLR 292
>gnl|CDD|128941 smart00701, PGRP, Animal peptidoglycan recognition proteins
homologous to Bacteriophage T3 lysozyme. The
bacteriophage molecule, but not its moth homologue, has
been shown to have N-acetylmuramoyl-L-alanine amidase
activity. One member of this family, Tag7, is a
cytokine.
Length = 142
Score = 29.2 bits (66), Expect = 4.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 580 TIPIKYPLREAVVIH-------NDAQCLQEIRTLESY 609
T + P+R ++ H DAQC Q +R +++Y
Sbjct: 17 TPRLTRPVRYVIIHHTATPNCYTDAQCAQILRNIQAY 53
>gnl|CDD|176662 cd07238, Glo_EDI_BRP_like_5, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping. The structure of this family is a that of a
strand-swapped dimer.
Length = 112
Score = 28.0 bits (63), Expect = 5.4
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 437 IMD-AWIISFSESL-----IEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKG 490
+MD WI +F+ + + A TVVP L + +D++ R
Sbjct: 27 VMDHGWIATFASPQNMTVQVSLATEGGTA----TVVPDLSIEVDDVDAALARAVAAGFAI 82
Query: 491 EGGPAD 496
GP D
Sbjct: 83 VYGPTD 88
>gnl|CDD|235006 PRK02126, PRK02126, ribonuclease Z; Provisional.
Length = 334
Score = 29.5 bits (67), Expect = 5.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 186 GNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAEL 227
G WLRE + A+ R TPI + D G E V + EL
Sbjct: 192 GPWLRELKH-AVLRGEPDDTPIRVLWRDGGGEHERVRPLGEL 232
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 29.5 bits (67), Expect = 5.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 319 ALFKQAPF-RNLIANGLVLAQDGQKMSKSKRN 349
A + F R+ + G++ DG+KMSKS+ N
Sbjct: 238 AATGERRFARHYVHAGMI-GLDGEKMSKSRGN 268
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 29.5 bits (67), Expect = 5.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 366 LVLSSDGQKMSKSKKNY 382
L+ +DG KM KS
Sbjct: 222 LLEGADGTKMGKSAGGA 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,354,022
Number of extensions: 3440221
Number of successful extensions: 2843
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2722
Number of HSP's successfully gapped: 152
Length of query: 659
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 556
Effective length of database: 6,369,140
Effective search space: 3541241840
Effective search space used: 3541241840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)