RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1860
(659 letters)
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 778 bits (2011), Expect = 0.0
Identities = 194/602 (32%), Positives = 295/602 (49%), Gaps = 62/602 (10%)
Query: 1 MQSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTG 60
+ L E ++L +F G L+GL Y P +P + V+ YV++E GTG
Sbjct: 261 EEGLGRKLLG--EGTQVLKTFPGKALEGLPYTPPYPQALE--KGYFVVLADYVSQEDGTG 316
Query: 61 VVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKH 120
+VHQAP FG +D G+ ++ VD G F GLY ++A++ I++
Sbjct: 317 IVHQAPAFGAEDLETARVYGL-----PLLKTVDEEGKLLVE--PFKGLYFREANRAILRD 369
Query: 121 LKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFV 180
L+ + L S HSYP CWR TPL+Y A SWFI+ +L++ N + +WVP +
Sbjct: 370 LRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHI 429
Query: 181 KEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK--D 238
KE R+G WL+ DWA+SRNRYWGTP+P+WV + +GS EL + + + D
Sbjct: 430 KEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFD 489
Query: 239 LHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADF 298
HR VD V + +RRVP V D W++SG+MP+A LH+PF++ F + FPADF
Sbjct: 490 PHRPYVDQVELAC--ACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADF 547
Query: 299 IAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPF 358
IAEGIDQTRGWF +L + LF F+N+I +GL+L + GQKMSKSK N DP +
Sbjct: 548 IAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWD--- 604
Query: 359 KNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRL---CPVHVWEPVHV-WSVCLILKEKV 414
++ G D + R + +++E V
Sbjct: 605 --------IIRKFG----------ADAL----RWYIYVSAPPEADRRFGPN---LVRETV 639
Query: 415 -------------LLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYR 461
+ ++ + MD W+++ + LI+ V + + AY
Sbjct: 640 RDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYD 699
Query: 462 LYTVVPRLVLF-IDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTP 520
T L F +++L+ WYVR NRRR D + A +L + L + + AP+TP
Sbjct: 700 PTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTP 759
Query: 521 FLCEHLYQNLRHLTGR-LERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERV 579
FL E L+QNL + S+H P+ + + D+ + ++ + VV+L R R +
Sbjct: 760 FLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARAKS 819
Query: 580 TI 581
+
Sbjct: 820 GV 821
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 309 bits (792), Expect = 2e-93
Identities = 112/694 (16%), Positives = 217/694 (31%), Gaps = 138/694 (19%)
Query: 8 LFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPY 67
L ++ E E+++ F+G L G + + +L +V ++ TGVV P
Sbjct: 273 LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE-----VIILPAEFVDPDNATGVVMSVPA 327
Query: 68 FGEDDYRVCLAGG---------------VITRDQEIVCPVDASGCFTAPVSH-------- 104
D+ V + ++ G F A
Sbjct: 328 HAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQ 387
Query: 105 ---------------------------FLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSY 137
+ G V++ + I K + E+
Sbjct: 388 KDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKN 447
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMN--QDLLKCNSDTYWVPEFVKEKRFGNWLREARDW 195
+ +I WFI + + K +PE + +F +
Sbjct: 448 VISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR-AQFEAIIDWLDKK 506
Query: 196 AISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEK----------DLHRESVD 245
A +R GTP+P W + E + +I + + K L E D
Sbjct: 507 ACARKIGLGTPLP-WDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFD 565
Query: 246 SVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQ 305
+ + K + +P +H + F+ +P D+ G D
Sbjct: 566 YIFLEEFSEDK---------EKELEKKTGIPAEIIHEMKEE---FEYWYPLDWRCSGKDL 613
Query: 306 TRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANG 365
+ A+F++ + IA +GQKMSKSK N + ++
Sbjct: 614 IPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFID---------- 663
Query: 366 LVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLS 425
+ +G D + RL + + E S +++V +++
Sbjct: 664 -AIEENG----------ADVV----RLYIMSLAEH---DSDFDWRRKEV---GKLRKQIE 702
Query: 426 FQYN----------EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDN 475
Y + +D W++ I+ + +R T V I N
Sbjct: 703 RFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN 762
Query: 476 LTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTG 535
WY+R R D + L + VR+MAP+TP +CE L++ L
Sbjct: 763 DLRWYLRRTEGR--------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG--- 811
Query: 536 RLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHN 595
E + P+P ++ IE + ++SV+E I+E + + + A +
Sbjct: 812 --EGFVSLAKWPEPVEEWWNETIEAEEEFIRSVME---DIKEIIEVAKIENAKRAYIYTA 866
Query: 596 DAQCLQEIRTLESYILQELNVRTVTFSTDKQKYG 629
+ + + + ++ + ++ +K+G
Sbjct: 867 EDWKWKVAEVVSEKRDFKSSMEELMKDSEIRKHG 900
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 279 bits (715), Expect = 8e-83
Identities = 144/624 (23%), Positives = 250/624 (40%), Gaps = 124/624 (19%)
Query: 2 QSRLETLFKK----EEEYEILDSFQGSTLKGLQYQ-PLFPYFKHVTSAFRVLTDTYVTEE 56
++ + + + + ++ + G L+ + Q P V + D +VT +
Sbjct: 265 EALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLV-----INGD-HVTTD 318
Query: 57 SGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKP 116
+GTG VH AP GEDDY V + ++ P+D G FT F G++ A+K
Sbjct: 319 AGTGCVHTAPGHGEDDYIVGQQYEL-----PVISPIDDKGVFTEEGGQFEGMFYDKANKA 373
Query: 117 IIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWV 176
+ L E+ L+ + HSYP WR+ P+I++A P WF + + QD+L +T +
Sbjct: 374 VTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFK 433
Query: 177 PEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIV---CVGSIAELHRLSGI 233
+ K R N +R+ +W ISR R WG P+P++ +++GE I+ V +A+L G
Sbjct: 434 VNWGK-TRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGS 492
Query: 234 SV--EKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFD 291
++ E++ + T P G + ++ D WF+SGS L +
Sbjct: 493 NIWFEREAKDLLPEGFTHPGSPNGT--FTKETDIMDVWFDSGSSHRGVL------ETRPE 544
Query: 292 DRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYP 351
FPAD EG DQ RGWF + + S A +P++ L+++G V+ DG+
Sbjct: 545 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVM--DGE---------- 592
Query: 352 DPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV---RG----RLCPVHVWEPVHVW 404
G+KMSKS N P +V +G RL W V
Sbjct: 593 --------------------GKKMSKSLGNVIVPDQVVKQKGADIARL-----W----VS 623
Query: 405 SV---------CLILKEKV------------LLANDAEEKLS-FQYNEAEGSTNIM---D 439
S ILK+ +L N ++ F + + + D
Sbjct: 624 STDYLADVRISDEILKQTSDDYRKIRNTLRFMLGN-----INDFNPDTDSIPESELLEVD 678
Query: 440 AWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDN-LTNWYVRMNRRRL--KGEGGPAD 496
++++ + + + FI+ L+N+Y+ + L +
Sbjct: 679 RYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIR 738
Query: 497 CKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIIDQ 556
+ L ++L M +++AP E ++ H E S+H MP+ +DQ
Sbjct: 739 -RSMQTVLYQILVDMTKLLAPILVHTAEEVWS---HTPHVKEESVHLADMPKVVE--VDQ 792
Query: 557 EIERSVKRMQSVVELGRVIRERVT 580
+ + +R+ V
Sbjct: 793 ALLDKWRTF-------MNLRDDVN 809
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 251 bits (643), Expect = 2e-73
Identities = 98/595 (16%), Positives = 181/595 (30%), Gaps = 130/595 (21%)
Query: 8 LFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPY 67
L ++ E E+++ F+G L G + + +L +V ++ TGVV P
Sbjct: 273 LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE-----VIILPAEFVDPDNATGVVMSVPA 327
Query: 68 FGEDDYRVCLAGG-------------VITRDQEIV--CPVDASGCFTAP----------- 101
D+ I + + ++ G F A
Sbjct: 328 HAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQ 387
Query: 102 ------------------------VSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSY 137
V + G V++ + I K + E+
Sbjct: 388 KDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKN 447
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMN--QDLLKCNSDTYWVPEFVKEKRFGNWLREARDW 195
+ +I WFI + + K +PE + +F +
Sbjct: 448 VISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR-AQFEAIIDWLDKK 506
Query: 196 AISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPG 255
A +R GTP+P W + E + +I + ++ + +++ +
Sbjct: 507 ACARKIGLGTPLP-WDPEWVIESLSDSTIYMAY----YTISRHINKLRQEG--------K 553
Query: 256 KPPLRRVPEVFDCWFESGSMPYAQLHFPFD----------NRRDFDDRFPADFIAEGIDQ 305
P + PE FD F + + +F+ +P D+ G D
Sbjct: 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDL 613
Query: 306 TRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANG 365
+ A+F++ + IA +GQKMSKSK N + ++ I
Sbjct: 614 IPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFID-----AI--- 665
Query: 366 LVLSSDGQKMSKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLS 425
++N D + RL + + E + K +++
Sbjct: 666 -------------EENGADVV----RLYIMSLAEHDSD----FDWRRKE--VGKLRKQIE 702
Query: 426 FQYN----------EAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDN 475
Y + +D W++ I+ + +R T V I N
Sbjct: 703 RFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN 762
Query: 476 LTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530
WY+R R L + VR+MAP+TP +CE L++ L
Sbjct: 763 DLRWYLRRTEGRDDEAKRYV--------LRTLADVWVRLMAPFTPHICEELWEKL 809
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 182 bits (465), Expect = 3e-54
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 1 MQSRLETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTG 60
+ L E +L +F G L+GL Y P +P + V+ YV++E GTG
Sbjct: 62 EEGLGRKLLG--EGTPVLKTFPGKALEGLPYTPPYPQALE--KGYFVVLADYVSQEDGTG 117
Query: 61 VVHQAPYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKH 120
+VHQAP FG +D G+ ++ VD G F GLY ++A++ I++
Sbjct: 118 IVHQAPAFGAEDLETARVYGL-----PLLKTVDEEGKLLVE--PFKGLYFREANRAILRD 170
Query: 121 LKEQSRLVSAGSVKHS 136
L+ + L S HS
Sbjct: 171 LRGRGLLFKEESYLHS 186
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 118 bits (297), Expect = 1e-27
Identities = 87/315 (27%), Positives = 136/315 (43%), Gaps = 33/315 (10%)
Query: 47 VLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITR-DQEIVCPVDASGCFTAPVS-- 103
+L D V ++ GTG + P DY + R + V ++ G
Sbjct: 254 ILADPAVEKDFGTGALKVTPAHDPLDYEIGE------RHGLKPVSVINLEGRMEGERVPE 307
Query: 104 HFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMN 163
GL +A + ++ +E LV + C R TP+ Y P W++R++ +
Sbjct: 308 ALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLA 367
Query: 164 QDLLKC--NSDTYWVPE-FVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVC 220
+++LK D +VPE + +K +WL +DW ISR +WG IP W +D + +
Sbjct: 368 EEVLKGLRRGDIAFVPERW--KKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVN- 424
Query: 221 VGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQL 280
V + R D + G P L+R +VFD WF S P + L
Sbjct: 425 --------------VPRP-ERYLEDPTSCE--ACGSPRLKRDEDVFDTWFSSALWPLSTL 467
Query: 281 HFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDG 340
+P + D +P D + G D W + V + PF+ ++ +GLVL + G
Sbjct: 468 GWP-EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKG 526
Query: 341 QKMSKSKRNYPDPME 355
QKMSKSK N DP+E
Sbjct: 527 QKMSKSKGNVIDPLE 541
Score = 68.4 bits (168), Expect = 5e-12
Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 20/225 (8%)
Query: 428 YNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI-DNLTNWYVRMNRR 486
+ E + + D ++ S +E + A L + + +WY+ +
Sbjct: 596 FQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKP 655
Query: 487 RLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMM 546
LK L +L +VL +++++ P PFL LYQ L + + +
Sbjct: 656 ALKAGN-----AHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG-----KEEL--ALE 703
Query: 547 PQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQE---- 602
P G D+E ER+ + ++ V R ++ +P +R V + + ++E
Sbjct: 704 AWPEPGGRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVR--VYLEGETAPVEENLEV 761
Query: 603 IRTLESY-ILQELNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLK 646
R L +L E + + + + + L D + R +
Sbjct: 762 FRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQE 806
Score = 53.7 bits (130), Expect = 2e-07
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 355 EPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
E PFK ++ +GLVL GQKMSKSK N DP+E+
Sbjct: 509 ERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEM 542
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 98.5 bits (245), Expect = 4e-23
Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 52/179 (29%)
Query: 8 LFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPY 67
L K Y+ L + G TL G + + K++ RVL V GTGVV P
Sbjct: 85 LTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNL----RVLPMETVLATKGTGVVTCVPS 140
Query: 68 FGEDDYRVCLAGGVITRDQEI-----------VCPVDASGCFTAP--------------- 101
DD+ I + + G A
Sbjct: 141 DSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSV 200
Query: 102 --------------------VSHFLGLYVKDADKPIIKHLKEQSR--LVSAGSVKHSYP 138
+ + G V+DA + + L ++ + + ++H +
Sbjct: 201 QLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHHH 259
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 80.8 bits (199), Expect = 4e-17
Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 15/157 (9%)
Query: 5 LETLFKKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQ 64
+ K ++ G + G +K + VL + E+ GTGVV
Sbjct: 79 YQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVI----YVLPMLTIKEDKGTGVVTS 134
Query: 65 APYFGEDDYRVCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGL--YVKDADKPIIKHLK 122
P DD L + + + + + + I LK
Sbjct: 135 VPSDSPDDI-AALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELK 193
Query: 123 EQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRV 159
QS+ + + + K + V
Sbjct: 194 IQSQ--------NDREKLAEAKEKIYLKGFYEGIMLV 222
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 70.2 bits (171), Expect = 3e-13
Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 18/180 (10%)
Query: 10 KKEEEYEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFG 69
K E + + GS L + ++ + VL + + GTG+V P
Sbjct: 136 KPFGELDFISEISGSDLLLATVRAPLSPYEQI----FVLPLETIKMDKGTGIVTSVPSDA 191
Query: 70 EDDYRVCLAGGVITRDQEIVCPVDASGCFTA----PVSHFLGLYVKDA----DKPIIKHL 121
DDY VD P+ + A ++ + L
Sbjct: 192 PDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSL 251
Query: 122 KEQSRLVSAGSVKHSYPFCWRSDTPLI--YKAVPSWFIRVQHMNQDLLKCN-SDTYWVPE 178
++++L + Y + + + + + Q L++ N Y PE
Sbjct: 252 HDRAKLTQIK--EICYTKGFYTGIMKMGPFAGQSVKDCK-QSCRDLLVQNNQCIVYSEPE 308
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 58.0 bits (141), Expect = 7e-09
Identities = 38/254 (14%), Positives = 69/254 (27%), Gaps = 70/254 (27%)
Query: 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPMEP---------------------PFKNLIA 363
PF+ L G+VLA + + + EP
Sbjct: 567 PFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHE 626
Query: 364 NGLVLSSDGQKMSKSKKNYPDPMEVRG-------RL-----CPVH---VW-----EPVH- 402
+G + MSKSK N R+ P VW +
Sbjct: 627 DGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWR 686
Query: 403 ----VWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMA 458
++ +A D E L + D + ++ V +++
Sbjct: 687 FLNRIYR---------RVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLE 737
Query: 459 AYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPY 518
A R T + L+ F++ L + V + ++++ P+
Sbjct: 738 ALRFNTAIAALMEFLNALY-----------EYRKDRPVTPV----YRTAIRYYLQMLFPF 782
Query: 519 TPFLCEHLYQNLRH 532
P L E L+
Sbjct: 783 APHLAEELWHWFWP 796
Score = 47.2 bits (113), Expect = 2e-05
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 193 RDWAISRNRYWGTPIP 208
RDW ISR RYWGTPIP
Sbjct: 420 RDWLISRQRYWGTPIP 435
Score = 32.9 bits (76), Expect = 0.44
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 140 CWR-SDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKE 182
CWR DTP+ + + W++R+ + LLK W PE VK
Sbjct: 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW-PEKVKA 218
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 1e-07
Identities = 88/542 (16%), Positives = 159/542 (29%), Gaps = 192/542 (35%)
Query: 82 ITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKP--------IIKH-LKE-QSRLVSAG 131
D E P + V FLG YV +P ++ L E ++ +
Sbjct: 48 FAADDEPTTPAEL-------VGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 132 SVKHSY--PFCWRSDTPLIYKA--VPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKR--- 184
+ H+ +DT L+ + ++ + K ++ + V E
Sbjct: 100 DI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF--RAVGEGNAQL 156
Query: 185 ---FG------NWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAE-LHRLSGIS 234
FG ++ E RD Y T L V D + AE L L +
Sbjct: 157 VAIFGGQGNTDDYFEELRD------LY-QTYHVL-VGD------LIKFSAETLSELIRTT 202
Query: 235 VEKD-LHRESVDSV---TIPSVRPGKPPLRRVPEVFDCWFESGSMPY---AQL-HFP-FD 285
++ + + + ++ + PS P K L +P + S P QL H+
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-I--------SCPLIGVIQLAHYVVTA 253
Query: 286 NRRDFDDRFPADFIAEGIDQTRGWFYTLL-----VISTALFKQAP----FRNLIANGL-V 335
F P + R + +++ + F + + V
Sbjct: 254 KLLGFT---PGEL--------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 336 LAQDGQKMSKSKRNYPDPMEPP--FKNLIANGLVLSSDGQKMSKSKKNYPDPM-EVRGRL 392
L G + YP+ PP ++ + N +G P PM + L
Sbjct: 303 LFFIG---VRCYEAYPNTSLPPSILEDSLENN-----EGV---------PSPMLSISN-L 344
Query: 393 CPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQ-YNEAEGSTNIMDAWIIS-FSESLI 450
V + +V L +++ N G+ N+ ++S +SL
Sbjct: 345 TQEQVQD--YVNKTNSHLPA--------GKQVEISLVN---GAKNL----VVSGPPQSL- 386
Query: 451 EFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFT 510
Y + L R+ K G ++ S K+ F+
Sbjct: 387 ------------YGLNLTL----------------RKAKAPSGLDQSRIPF-SERKLKFS 417
Query: 511 MV--RVMAPY-TPFL-------CEHL----------------Y-----QNLRHLTGRLER 539
V +P+ + L + L Y +LR L+G +
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 540 SI 541
I
Sbjct: 478 RI 479
Score = 47.0 bits (111), Expect = 2e-05
Identities = 76/453 (16%), Positives = 130/453 (28%), Gaps = 155/453 (34%)
Query: 8 LFK--KEEEYEILDSF--QGST---LKGLQ-----YQPLFPYFKHVTSAFRVLTDTYVTE 55
LF+ E +++ F QG+T + L+ Y L + + L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL--IKFSAETL------S 196
Query: 56 ESGTGVVHQAPYFGED-DYRVCLAGGVITRDQEIVCPVDASGCFTAPVS----------H 104
E + F + + L T D++ + + P+S H
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL--------SIPISCPLIGVIQLAH 248
Query: 105 F------LGLY---VKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSW 155
+ LG ++ K H + LV+A ++ + W S + KA+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQG---LVTAVAIAETD--SWESFFVSVRKAITVL 303
Query: 156 F---IRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIP-LWV 211
F +R +T P +++ ++ N G P P L +
Sbjct: 304 FFIGVRCYE-------AYPNTSLPPSILED-------------SLENNE--GVPSPMLSI 341
Query: 212 SDDGEEIVCVGSIAELHRLSGISVEKDLH-------RESVDSVTIPSVRPGKPP--LRRV 262
S V + K + + V V+ G PP L
Sbjct: 342 S--NLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLV--VS------G-PPQSLYG- 388
Query: 263 PEVFDCWFESGSMPYA--QLHFPFDNRR-DFDDRFPADFIAEGIDQTRGWFYTLLVISTA 319
+ P Q PF R+ F +RF L ++
Sbjct: 389 ---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-------------------LPVA-- 424
Query: 320 LFKQAPFRNLIANGLVLAQDGQKMSKSKRNYP----DPMEPPFKNLIANGLVLSSDGQKM 375
+PF + + LV A D K N D P + +G SD + +
Sbjct: 425 ----SPFHSHL---LVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDG----SDLRVL 471
Query: 376 SKSKKNYPDPMEVRGRLCPVHVWEPVHVWSVCL 408
S S + R+ + PV W
Sbjct: 472 SGS---------ISERIVDCIIRLPVK-WETTT 494
Score = 36.2 bits (83), Expect = 0.045
Identities = 48/315 (15%), Positives = 91/315 (28%), Gaps = 125/315 (39%)
Query: 225 AELHRLS--GISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHF 282
A+ H G S+ D+ + ++T + G +R+ E + +M +
Sbjct: 1649 ADNHFKDTYGFSI-LDIVINNPVNLT---IHFGGEKGKRIRENYS------AMIFET--- 1695
Query: 283 PFDNRRDFDDRFPA------DFIAEG----IDQTRGWFYT---LLVISTALFKQAPFRNL 329
D + + F + + T+ +T L ++ A F +L
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ---FTQPALTLMEKAAF-----EDL 1747
Query: 330 IANGLVLAQD-------GQKMSKSKRNYPDPMEPPFKNLIANGLVLS-SDGQKMSKSKKN 381
+ GL+ A G E + L + V+S ++
Sbjct: 1748 KSKGLIPADATFAGHSLG--------------E--YAALASLADVMSIESLVEVVF---- 1787
Query: 382 YPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDA- 440
RG A + +E S M A
Sbjct: 1788 ------YRGMT------------------------MQVAVPR-----DELGRSNYGMIAI 1812
Query: 441 ----WIISFSESLIEFVRKEMAAYRLYTVVPRLVLFI--DNLTNW-YVRMNRRRLKGEGG 493
SFS+ +++V + + ++ I N+ N YV G+
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKR------TGWLVEIVNYNVENQQYV------AAGD-- 1858
Query: 494 PADCKVALNSLTKVL 508
AL+++T VL
Sbjct: 1859 ----LRALDTVTNVL 1869
Score = 34.6 bits (79), Expect = 0.12
Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 31/141 (21%)
Query: 28 GLQYQPLF-PYF-KHVTSAF-RVLTDTYVTEESGTGVVHQAP-YFGED--DYRVCLAGGV 81
++ P+ P+ + A + D S Q P Y D D RV L+G +
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-LSGSI 475
Query: 82 ITR--DQEIVCPVDASGCFTAPVSHFL--------GLYVKDADKPIIKHLKEQS--RLVS 129
R D I PV +H L GL + K+ + R++
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL------GVLTHRNKDGTGVRVIV 529
Query: 130 AGSVKHSYPFCWRSDTPLIYK 150
AG++ + D +K
Sbjct: 530 AGTLDIN------PDDDYGFK 544
Score = 30.4 bits (68), Expect = 2.5
Identities = 81/522 (15%), Positives = 149/522 (28%), Gaps = 203/522 (38%)
Query: 251 SVRP-----GKPPLRR---VPEVFDCWFESGSMPYAQLHFPFDNRRDF-------DDRFP 295
S RP G L VP +F +QL + F + F
Sbjct: 5 STRPLTLSHGS--LEHVLLVPT--ASFF-----IASQL------QEQFNKILPEPTEGFA 49
Query: 296 AD---------------FIAEGIDQTR-GWFYTLLVISTALFKQAPFRN-----LIANGL 334
AD +++ ++ ++ G F +L + F+ L A
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK-- 107
Query: 335 VLAQDGQKMSKSK---RNY---PDPMEPPFKNLIANGLVLSSD-----------GQKMSK 377
+L ++ + K+K +NY + PF + L + GQ
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ---- 163
Query: 378 SKKNYPDPMEVRGRLCPVHVWEPVHVWSVCLILKEKVLLANDAEEKLSFQYNEAEGSTNI 437
G + +E L Y +
Sbjct: 164 ------------G---------NTDDY-----FEE-----------LRDLYQT---YHVL 183
Query: 438 MDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPAD- 496
+ I +E+L E +R + A +++T ++ + W L+ D
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQG------LN-ILEW--------LENPSNTPDK 228
Query: 497 -----CKVA--LNSLTK-VLFTMVRVMAPYTPFLCEHLYQNLRHLTGR------------ 536
++ L + + + + + +TP L L+ TG
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAE 285
Query: 537 -------LERSIHFIMM-------PQ---PNRGIIDQEIERSVKR-------MQSVVELG 572
I + PN + +E S++ M S+ L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 573 RV-IRERVTIPIKY-PLREAVVI--HNDAQCL------QEIRTLESYILQELNVRT---- 618
+ +++ V + P + V I N A+ L Q + L L++ +
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-LRKAKAPSGLDQ 404
Query: 619 --VTFSTDKQKYGVSLR----AEPDHKTLGARLKTAFKPITQ 654
+ FS ++K S R A P H L L A I +
Sbjct: 405 SRIPFS--ERKLKFSNRFLPVASPFHSHL---LVPASDLINK 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 3e-07
Identities = 78/629 (12%), Positives = 167/629 (26%), Gaps = 227/629 (36%)
Query: 102 VSHFLGLYVKDAD--------KPIIKH-----------------------LKEQSRLVSA 130
+S F +V + D K I+ L +Q +V
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 131 ---GSVKHSYPFCWRS------DTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVK 181
++ +Y F ++ + R+ + NQ K Y V
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----YNVSRLQP 136
Query: 182 EKRFGNWLRE------------------------ARDWAISRNRYWGTPIPLWVS----D 213
+ L E + + + W++ +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---FWLNLKNCN 193
Query: 214 DGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIP-SVRPGKPPLRRV---------- 262
E + + L +L ++ + S S I + + LRR+
Sbjct: 194 SPETV-----LEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 263 --------PEVFDCWFESGSMPYAQLHFPFDNR-------RD---FDD-------RFPAD 297
+ ++ F+ R D D
Sbjct: 248 LVLLNVQNAKAWN---------------AFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 298 FIAEGI--DQTRGWFYTLLVISTA-LFKQA----PFR-NLIANGLVLAQDGQKMSKSKRN 349
+ + D+ + L L ++ P R ++IA + +DG N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWD---N 346
Query: 350 YPDPMEPPFKNLIANGL-VLSSDGQKMSKSKKNY------PD----PMEVRGRL------ 392
+ +I + L VL +K + P P + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 393 -CPVHVWEPVHVWSVC-------------LILKEKVLLANDAE--EKLSFQYNEAEG--- 433
+ V +H +S+ + L+ KV L N+ + YN +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 434 ---STNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKG 490
+D + S I K + T+ + L + + ++++
Sbjct: 462 DDLIPPYLDQYFYSH----IGHHLKNIEHPERMTLFRMVFL---DF-RFL----EQKIRH 509
Query: 491 EGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEH----------LYQNLRHLTGRLERS 540
+ + ++ + + L Y P++C++ + L + L S
Sbjct: 510 DSTAWNASGSILNTLQQLKF-------YKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 541 -----IHFIMMPQPNRGIIDQEIERSVKR 564
+ +M + I + E + V+R
Sbjct: 563 KYTDLLRIALMA-EDEAIFE-EAHKQVQR 589
Score = 49.1 bits (116), Expect = 4e-06
Identities = 48/357 (13%), Positives = 92/357 (25%), Gaps = 121/357 (33%)
Query: 81 VITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPI--------IKHLKEQSRLVSAGS 132
+ TR +++ + A+ + H D K + + L + +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--- 326
Query: 133 VKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLR-- 190
P +I +++ W + V + +
Sbjct: 327 -----PRR----LSIIAESIRDGLATWD-------------NW--KHVNCDKLTTIIESS 362
Query: 191 -EARDWAISRNRYW-------GTPIP------LW---VSDDGEEIVCVGSIAELHRLSGI 233
+ A R + IP +W + D +V +LH+ S
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-----KLHKYS-- 415
Query: 234 SVEKD------------------------LHRESVDSVTIPSVRPGKPPLRRVPEVFDCW 269
VEK LHR VD IP + P + +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYF 473
Query: 270 FESGSMPYAQLHFPFDNRRDFDDRFPA-----DFIAEGIDQTRGWFYTLLVISTALFKQA 324
+ + H + F F+ + I STA
Sbjct: 474 YS-----HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD----------STAWNASG 518
Query: 325 PFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFKNLIANGLV--LSSDGQKMSKSK 379
N + Q + + Y +P ++ L+ N ++ L + + SK
Sbjct: 519 SILNTL-------QQLKFY----KPYICDNDPKYERLV-NAILDFLPKIEENLICSK 563
Score = 45.6 bits (107), Expect = 6e-05
Identities = 70/490 (14%), Positives = 130/490 (26%), Gaps = 167/490 (34%)
Query: 270 FESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGI-DQTRGWFYTLLVISTALFK---QAP 325
FE+G Q + D F+D F +F + + D + ++S +
Sbjct: 9 FETGEH---QYQYK-DILSVFEDAFVDNFDCKDVQDMPKS------ILSKEEIDHIIMSK 58
Query: 326 FRNLIANGL--VLAQDGQKMSKS------KRNYPDPMEPPFKNLIANGLVLSSDGQKMSK 377
L L ++M + + NY M P + ++ ++ S
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-----------IKTEQRQPSM 107
Query: 378 SKKNYPDPMEVRGRLC-------PVHVWEPVHVWSVCLILKE----------------KV 414
+ Y +E R RL +V + L E K
Sbjct: 108 MTRMY---IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 415 LLANDA------EEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPR 468
+A D + K+ F I W ++ EM LY + P
Sbjct: 165 WVALDVCLSYKVQCKMDF---------KI--FW-LNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 469 LVLFIDNLTNWYVRMN------RRRLKGEGGPA-----D--------------CKV---- 499
D+ +N +R++ RR LK + CK+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 500 -------ALNSLTKVLFTMVRVMAPYT---------------------------PFLCEH 525
L++ T ++ T P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 526 LYQNLRHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSV------VELGRVIRERV 579
+ +++R + N + IE S+ ++ L V
Sbjct: 333 IAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSA 385
Query: 580 TIPIKYPLREAVVIHNDAQCLQEI-RTLESYILQELNVRTVTFSTDKQKYGV--SLRAEP 636
IP L + + + L Y L E + T S + L+ +
Sbjct: 386 HIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLELKVKL 439
Query: 637 D-----HKTL 641
+ H+++
Sbjct: 440 ENEYALHRSI 449
Score = 45.2 bits (106), Expect = 7e-05
Identities = 72/523 (13%), Positives = 144/523 (27%), Gaps = 151/523 (28%)
Query: 159 VQHMNQDLL-------KCNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWV 211
Q+ +D+L N D V + K E +S++ GT W
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSK--EEIDHIIMSKDAVSGTLRLFWT 70
Query: 212 -SDDGEEIVCVGSIAELHRLSGISVEKD-------LHRESVDSVTIPSVRPGKPPLRRVP 263
EE+V + + + + E PS R
Sbjct: 71 LLSKQEEMV--------QKFVEEVLRINYKFLMSPIKTEQRQ----PS-----MMTRMYI 113
Query: 264 EVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQ 323
E D + +A+ + R L + AL +
Sbjct: 114 EQRDRLYNDNQ-VFAKYNVS---RLQ----------------------PYLKLRQALLEL 147
Query: 324 APFRNLIANGL------VLAQDGQKMSKSKRNYPDPM---------EP-----PFKNLIA 363
P +N++ +G+ +A D K + + P + L+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 364 NGLVLSSDGQKMSKSKKNYPDPME-VRGRL-----------CPV---HVWEPVHVWSV-- 406
+ + S N + ++ L C + +V W+
Sbjct: 208 Q---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFN 263
Query: 407 --CLILKEKVLLANDAEEKLSFQYNEAEGSTNIMDAWIISFSES-LIEFVRK--EMAAYR 461
C IL L + ++ + A + +D ++ + + + K +
Sbjct: 264 LSCKIL----LTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 462 L----YTVVPRLV-----LFIDNLTNW--YVRMNRRRLKG--EGG-----PADCKVALNS 503
L T PR + D L W + +N +L E PA+ + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 504 L----------TKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGI 553
L T +L + + + + + + + S I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS------- 430
Query: 554 IDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHND 596
I E++ ++ L R I + IP + + + + D
Sbjct: 431 IYLELKVKLENEY---ALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 47.8 bits (114), Expect = 9e-06
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA-RDWA 196
P C P+ ++ ++I++Q + L + W P +W+ E + A
Sbjct: 171 PRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVL--SWIEEGLEERA 228
Query: 197 ISRNRYWGTPIPLWVSD 213
I+R+ WG P+PL D
Sbjct: 229 ITRDLNWGIPVPLDEED 245
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 47.2 bits (113), Expect = 2e-05
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 193 RDWAISRNRYWGTPIP 208
RDW +SR RYWG PIP
Sbjct: 438 RDWGVSRQRYWGAPIP 453
Score = 39.9 bits (94), Expect = 0.003
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 325 PFRNLIANGLVLAQDGQKMSKS-KRNYPDPME----------PPFKNLIANGLVLSSDGQ 373
P + L+ G+VLA + ++ +RN+ P++ A ++ +
Sbjct: 579 PAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMS 638
Query: 374 KMSKSKKNYPDPMEV 388
KMSKSK N DP +
Sbjct: 639 KMSKSKNNGIDPQVM 653
Score = 37.5 bits (88), Expect = 0.013
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 140 CWRSDTPLIYKAVPSWFIRVQHMNQDLLKC-NSDTYWVPEFVK 181
CWR DT + K +P WFI++ +LL + +W P+ VK
Sbjct: 196 CWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHW-PDTVK 237
Score = 36.8 bits (86), Expect = 0.023
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 504 LTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRG-IIDQEIE 559
+ + L +VR++ P+TP +C L+Q L+ E I P + +++
Sbjct: 770 MQEALLAVVRMLNPFTPHICFTLWQELKG-----EGDIDNAPWPVADEKAMVEDSTL 821
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 40.7 bits (96), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P +++L G +L DG+KMSK+ N DP +
Sbjct: 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFAL 311
Score = 36.1 bits (84), Expect = 0.040
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 327 RNLIANGLVLAQDGQKMSKSKRNYPDPME 355
R+L G +L DG+KMSK+ N DP
Sbjct: 282 RHLNVGGFLLGPDGRKMSKTLGNVVDPFA 310
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 36.9 bits (86), Expect = 0.021
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P K + A+G +L+ G+KMSKS N DP+ +
Sbjct: 293 PLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNL 324
Score = 33.4 bits (77), Expect = 0.26
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 280 LHFPFDNRRDFDDRFPAD--FIAEGIDQTRGWFYTLLVISTALFKQA---PFRNLIANGL 334
+ FP F +PAD I + I F+T V A A + + A+G
Sbjct: 250 VGFPDTESESFRRYWPADLHMIGKDII----RFHT--VYWPAFLMSAGLPLPKRIFAHGW 303
Query: 335 VLAQDGQKMSKSKRNYPDPME 355
+L G+KMSKS N DP+
Sbjct: 304 LLN-RGEKMSKSIGNVVDPVN 323
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 36.9 bits (86), Expect = 0.023
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P K + A+G + + G+KMSKS N DP E+
Sbjct: 304 PLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFEL 335
Score = 32.2 bits (74), Expect = 0.64
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 339 DGQKMSKSKRNYPDPME 355
G+KMSKS N DP E
Sbjct: 318 RGEKMSKSVGNVIDPFE 334
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 36.4 bits (85), Expect = 0.028
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
K + A+G +G+KMSK+ N DP EV
Sbjct: 278 ELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEV 309
Score = 31.4 bits (72), Expect = 1.00
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 327 RNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ + A+G +G+KMSK+ N DP E
Sbjct: 281 KKVFAHGWWT-VEGKKMSKTLGNVVDPYE 308
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 36.1 bits (84), Expect = 0.040
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P + L+++G D +K+SKS N DP+E
Sbjct: 322 PLPERLVSHGWWTK-DHKKISKSLGNAFDPVEK 353
Score = 31.9 bits (73), Expect = 0.83
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 339 DGQKMSKSKRNYPDPME 355
D +K+SKS N DP+E
Sbjct: 336 DHKKISKSLGNAFDPVE 352
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 36.1 bits (84), Expect = 0.041
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREA-RDWA 196
P S + + +F + ++ L + V K W + W
Sbjct: 186 PKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQ-VANK-MQEWFESGLQQWD 243
Query: 197 ISRN-RYWGTPIP 208
ISR+ Y+G IP
Sbjct: 244 ISRDAPYFGFEIP 256
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 34.2 bits (78), Expect = 0.13
Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 60/229 (26%)
Query: 138 PFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGN----WLREA- 192
S + + + ++ R+ + LL+ P + + + +
Sbjct: 157 KVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHAN---PGCIVPEFRRREVIRAVEKGL 213
Query: 193 RDWAISRNRY----WGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVT 248
D ++SR R W P+P + + V V A + L+G + D
Sbjct: 214 PDLSVSRARATLHNWAIPVP----GNPDHXVYVWLDALTNYLTGSRLRVD---------- 259
Query: 249 IPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPAD--FIAEGIDQT 306
+ + + +RFPAD I + I +
Sbjct: 260 ----------------------------ESGKEVSLVDDFNELERFPADVHVIGKDILKF 291
Query: 307 RGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
++ ++S L + ++A+G +D +K+SKS N DP+E
Sbjct: 292 HAIYWPAFLLSAGL---PLPKKIVAHGWWT-KDRKKISKSLGNVFDPVE 336
Score = 30.0 bits (67), Expect = 3.1
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEVRGRLCP----VHVWEPVHVWSVCLILK 411
P K ++A+G D +K+SKS N DP+E +
Sbjct: 306 PLPKKIVAHGWWTK-DRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSD 364
Query: 412 EKVL------LAND---------AEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKE 456
+ ++ LA+ + + + + D +I + L
Sbjct: 365 KNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHY 424
Query: 457 MAAYRLYTVVPRLVLFIDNLTNWYV 481
+ + + + N YV
Sbjct: 425 YLIPDIQKAIIAVFDVL-RAINAYV 448
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 33.3 bits (77), Expect = 0.26
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E L FV+ +A ++ PR ++F+D+L
Sbjct: 488 EELKAFVKDRLAPHK----YPRDIVFVDDL 513
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.29
Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 44/142 (30%)
Query: 201 RYWGTPIPLWVSDDGEEIVCVGSIAELHR---L--SGI-SVEKDL-------HRESVDSV 247
G P WV +E V + + L SGI +E +L +E + V
Sbjct: 867 NLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEV 926
Query: 248 TI-----PSVR------------PGKPPLRRVPEVFDCW--FESGSMPYAQLHFPFDNR- 287
+ P K + +PE + G+ Y FD
Sbjct: 927 IVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLV 986
Query: 288 -----RDFDDRFPADFIAEGID 304
++ + GI
Sbjct: 987 AGQIPTGWN---AKTY---GIS 1002
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 33.3 bits (77), Expect = 0.29
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E +IE+VR+ ++ Y+ R V F++ L
Sbjct: 498 EDIIEWVRERISGYK----RVREVEFVEEL 523
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 31.9 bits (73), Expect = 0.58
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 354 MEPPFKNLIANGLVLSSDGQKMSKSKKNY----PDPMEVRGRL----CPVHVWE 399
P + +++ DGQKMS SK NY P EV ++ CP V E
Sbjct: 196 YSSPV--CLHTPILVGLDGQKMSSSKGNYISVRDPPEEVERKIRKAYCPAGVVE 247
Score = 29.9 bits (68), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 330 IANGLVLAQDGQKMSKSKRNYPDPMEPP 357
+ +++ DGQKMS SK NY +PP
Sbjct: 202 LHTPILVGLDGQKMSSSKGNYISVRDPP 229
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 31.8 bits (73), Expect = 0.63
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 373 QKMSKSKKNYPDPMEVRGR--LCPVHVWEP-VHVWSVCLILKEKVLLANDAEEK------ 423
+ + + K+ +VRG+ LC + V+V +CL LKE L+ D +K
Sbjct: 347 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTP 406
Query: 424 -LSFQYNEAEGSTNIMDAWIISFSESL 449
L + + T I+ + F E
Sbjct: 407 PLCITKEQLDECTEIIVKTVKFFDERF 433
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 31.7 bits (73), Expect = 0.69
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 367 VLSSDGQKMSKSKKNY 382
V+ +DG KMSKS +N
Sbjct: 185 VVGTDGAKMSKSYQNT 200
Score = 29.4 bits (67), Expect = 3.9
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 339 DGQKMSKSKRNYPDPMEPP 357
DG KMSKS +N D
Sbjct: 189 DGAKMSKSYQNTIDIFSSE 207
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 31.8 bits (73), Expect = 0.76
Identities = 6/30 (20%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
++ + ++A ++ +P+ V+F+D+L
Sbjct: 456 AQVLHGLDGQLAKFK----MPKKVIFVDDL 481
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 31.8 bits (73), Expect = 0.83
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
LI ++ K +A Y+ VP+ +D L
Sbjct: 453 AQLIAYLSKHLAKYK----VPKHFEKVDTL 478
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 31.7 bits (73), Expect = 0.88
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
++L EFV +A Y+ P+ V+F++ L
Sbjct: 457 DALAEFVASLIARYK----KPKHVVFVEAL 482
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 31.4 bits (72), Expect = 0.96
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
+ ++E+ +A Y+ +P+ V+F + +
Sbjct: 469 QQIVEYCGTRLARYK----LPKKVIFAEAI 494
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 31.1 bits (71), Expect = 1.2
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
+L + V +A ++ PR+V ++D +
Sbjct: 464 GTLADHVAARLAPHK----RPRVVRYLDAV 489
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 351 PDPMEPPFKNLIANGLVLSSDGQKMSKSKKNY 382
P+ + + +DG+KMSKS N
Sbjct: 188 PEAILSRV------PKLPGTDGRKMSKSYGNI 213
Score = 29.1 bits (66), Expect = 4.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 339 DGQKMSKSKRNY 350
DG+KMSKS N
Sbjct: 202 DGRKMSKSYGNI 213
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 29.8 bits (68), Expect = 2.9
Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
+ + +++ K++ Y+ + V FI+ +
Sbjct: 491 DEIKQYISKQVIFYK----RIKRVFFIEAI 516
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 29.8 bits (68), Expect = 3.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
L + V+ A Y PR++ F+ L
Sbjct: 535 NELQDHVKNVTAPY----KYPRIIEFVPEL 560
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.2
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 33/59 (55%)
Query: 601 QEIRTLESYILQELNVRTVTFSTDKQKYGVSLRAEPDHKTLGARLKTAFKPITQAIKVS 659
Q ++ L++ + + Y D +A P AIK +
Sbjct: 20 QALKKLQASL---------------KLY------ADD---------SA--P-ALAIKAT 45
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 29.9 bits (68), Expect = 3.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 364 NGLVLSSDGQKMSKSKKN----------YPDPMEVR 389
G++ DG KMSKS+ N DP +R
Sbjct: 282 TGMI-GWDGHKMSKSRGNLVLVSQLRAQGVDPSAIR 316
Score = 29.1 bits (66), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 317 STALFKQAPFRNL-IANGLVLAQDGQKMSKSKRN 349
+ ++ + F + G++ DG KMSKS+ N
Sbjct: 266 AESVTGERRFARHYVHTGMI-GWDGHKMSKSRGN 298
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 29.9 bits (68), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
+ L + V+ A Y PR + F+ NL
Sbjct: 518 KELQQHVKSVTAPY----KYPRKIEFVLNL 543
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 29.5 bits (67), Expect = 4.4
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 12/30 (40%)
Query: 371 DGQKMSKS-----------KKNYPDPMEVR 389
D KMSKS +N+ P++ R
Sbjct: 296 DYNKMSKSRGNFITVKDLEDQNF-SPLDFR 324
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 29.0 bits (66), Expect = 4.5
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 531 RHLTGRLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVV 569
H+ RL+ + +M+ ++QE++ Q+ V
Sbjct: 41 AHIQ-RLQDACQRLMISCDFWPQLEQEMKTLAAEQQNGV 78
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus}
SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Length = 361
Score = 29.3 bits (66), Expect = 4.5
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 316 ISTALFKQAPFRNLIANGLV-LAQDGQKMSKSKRNYPDPMEPPFKNLIANGLV 367
+S +Q+P L +G+ A + + Y D NL GL+
Sbjct: 114 VSGPTAEQSPDSELFLDGIFGAAY--PDNTAMEAEYGDTYNTVHVNLYKQGLI 164
>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC
domain, type III, effector, T3SS,
nucleotidyltransferase, virulence; 1.80A {Vibrio
parahaemolyticus}
Length = 314
Score = 28.8 bits (63), Expect = 6.3
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 212 SDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFE 271
+ +G++++ + ++ ELH +VE+D ++ T+PS G+ L++ E F
Sbjct: 198 ATNGKDLLNMDNLKELHARLVPNVERDYRGPNISGGTLPSSIGGEGMLKQHIEGFLKENP 257
Query: 272 SGSMPYAQLHF 282
+ F
Sbjct: 258 VADKDLGKHLF 268
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 7.0
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 18/93 (19%)
Query: 232 GISVEKDLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSM-------------PYA 278
G++++ + E ++ + PPL R+ E P+
Sbjct: 117 GMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSG----LELSDTKQKGKKFLVIAYEPFE 172
Query: 279 QLHFPFDNRR-DFDDRFPADFIAEGIDQTRGWF 310
+ F + D +G+D+
Sbjct: 173 NIAIELPPNEILFSENNDMDNNNDGVDELNKKC 205
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.5 bits (64), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 366 LVLSSDG-QKMSKSKKNY 382
L++ DG +KMSKS NY
Sbjct: 223 LLVGLDGREKMSKSLDNY 240
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 28.3 bits (64), Expect = 8.8
Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 33/135 (24%)
Query: 204 GTPIPLWVSDDGEEIVCVGSI--------------AELHRLSGISVEKDL---------H 240
GTP +V GE IV G+I + L L I V +
Sbjct: 240 GTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSL-NIPVVLSHPYVGQFLHDN 298
Query: 241 RESVDSVTIPSVRPGKPPLRRVP----EVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPA 296
+ + I P +P + V + + C F S F F +
Sbjct: 299 PRNF--INILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGF-FPSSSYPLPNSTF 355
Query: 297 DFIAEGID--QTRGW 309
A + + G
Sbjct: 356 AHFASKVAGPLSYGS 370
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,364,882
Number of extensions: 646823
Number of successful extensions: 1481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1423
Number of HSP's successfully gapped: 91
Length of query: 659
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 559
Effective length of database: 3,909,693
Effective search space: 2185518387
Effective search space used: 2185518387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)