RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1860
(659 letters)
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 184 bits (467), Expect = 4e-52
Identities = 98/221 (44%), Positives = 134/221 (60%)
Query: 135 HSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARD 194
YP CWR TPL+Y A SWFI+ +L++ N + +WVP +KE R+G WL+ D
Sbjct: 195 LGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVD 254
Query: 195 WAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRP 254
WA+SRNRYWGTP+P+WV + +GS EL + + + +
Sbjct: 255 WALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACA 314
Query: 255 GKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLL 314
+RRVP V D W++SG+MP+A LH+PF++ F + FPADFIAEGIDQTRGWF +L
Sbjct: 315 CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLH 374
Query: 315 VISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ LF F+N+I +GL+L + GQKMSKSK N DP +
Sbjct: 375 QLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWD 415
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 151 bits (382), Expect = 2e-40
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 10/224 (4%)
Query: 135 HSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARD 194
YP WR+ P+I++A P WF + + QD+L +T + + + R N +R+ +
Sbjct: 198 IEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW-GKTRIYNMVRDRGE 256
Query: 195 WAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKD-LHRESVDSVTIPSVR 253
W ISR R WG P+P++ +++GE I+ ++ + L RE+ D +
Sbjct: 257 WVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTH 316
Query: 254 PGKP--PLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFY 311
PG P + ++ D WF+SGS L + FPAD EG DQ RGWF
Sbjct: 317 PGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELS------FPADMYLEGSDQYRGWFN 370
Query: 312 TLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+ + S A +P++ L+++G V+ +G+KMSKS N P +
Sbjct: 371 SSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQ 414
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 131 bits (331), Expect = 8e-34
Identities = 63/222 (28%), Positives = 95/222 (42%), Gaps = 20/222 (9%)
Query: 135 HSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLK-CNSDTYWVPEFVKEKRFGNWLREAR 193
C R TP+ Y P W++R++ + +++LK +K +WL +
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVK 245
Query: 194 DWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVR 253
DW ISR +WG IP W +D + + L +
Sbjct: 246 DWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCE------------------A 287
Query: 254 PGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTL 313
G P L+R +VFD WF S P + L +P + D +P D + G D W +
Sbjct: 288 CGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE-DLKAFYPGDVLVTGYDILFLWVSRM 346
Query: 314 LVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
V + PF+ ++ +GLVL + GQKMSKSK N DP+E
Sbjct: 347 EVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLE 388
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 94.3 bits (233), Expect = 7e-21
Identities = 62/320 (19%), Positives = 98/320 (30%), Gaps = 48/320 (15%)
Query: 109 YVKDADKPIIKHLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLK 168
A + K Q+ L A DTP+ + + W++R+ + LLK
Sbjct: 148 LAYRAKGLVNWCPKCQTVL--ANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLK 205
Query: 169 CNSDTYWVPEFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVC-----VGS 223
W + + W+ RDW ISR RYWGTPIP+ + +
Sbjct: 206 DLEGLNWPEKV--KAMQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVL 263
Query: 224 IAELHRLSGISVEK----DLHRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQ 279
+ +L + I + + H E + T P G P +R + D +F+S
Sbjct: 264 LPDLKDVEDIRPKGKSPLEAHPEFYE-TTCPK--CGGP-AKRDTDTMDTFFDSSWYYLRY 319
Query: 280 LHFPFDN----RRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQ------APFRNL 329
D + P D G++ + L PF+ L
Sbjct: 320 TDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL 379
Query: 330 IANGLVLAQDGQKMSKSKRNYPDPMEP---------------------PFKNLIANGLVL 368
G+VLA + + + EP +G +
Sbjct: 380 FTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLH 439
Query: 369 SSDGQKMSKSKKNYPDPMEV 388
MSKSK N
Sbjct: 440 LWKPAVMSKSKGNGVMVGPF 459
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS)
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 77.8 bits (190), Expect = 3e-17
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 415 LLANDAEEKLSFQYNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLV-LFI 473
+ ++ + MD W+++ + LI+ V + + AY T L +
Sbjct: 12 FVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVV 71
Query: 474 DNLTNWYVRMNRRRLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHL 533
++L+ WYVR NRRR D + A +L + L + + AP+TPFL E L+QNL
Sbjct: 72 EDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 131
Query: 534 TG-RLERSIHFIMMPQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTI 581
+ S+H P+ + + D+ + ++ + VV+L R R + +
Sbjct: 132 VRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARAKSGV 180
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 77.3 bits (189), Expect = 7e-17
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 24 STLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVIT 83
G + + + + V+ +VT ++GTG VH AP GEDDY V +
Sbjct: 86 KEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPV 145
Query: 84 RDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLVSAGSVKHSY 137
P+D G FT F G++ A+K + L E+ L+ + HSY
Sbjct: 146 I-----SPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSY 194
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 67.7 bits (164), Expect = 9e-14
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 15 YEILDSFQGSTLKGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYR 74
+L +F G L+ PY + + + V+ YV++E GTG+VHQAP FG +D
Sbjct: 71 TPVLKTFPGKALE--GLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLE 128
Query: 75 VCLAGGVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLV 128
G ++ VD G F GLY ++A++ I++ L+ + L
Sbjct: 129 TARVYG-----LPLLKTVDEEGKLLVE--PFKGLYFREANRAILRDLRGRGFLF 175
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 62.7 bits (151), Expect = 5e-11
Identities = 34/269 (12%), Positives = 64/269 (23%), Gaps = 63/269 (23%)
Query: 120 HLKEQSRLVSAGSVKHSYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEF 179
K + P+ ++ ++I++Q + L + W P
Sbjct: 118 VKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNV 177
Query: 180 VKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDL 239
+ AI+R+ WG P+PL D +++ V A + +S
Sbjct: 178 KNMVLS-WIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITI----- 231
Query: 240 HRESVDSVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFI 299
+ + E W DN +PA +
Sbjct: 232 --------------EHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLM 277
Query: 300 AEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPMEPPFK 359
A G +
Sbjct: 278 AYGKYKDEEVEAEW------------------------------------------NLPY 295
Query: 360 NLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
++ AN + +G+K S S+ E
Sbjct: 296 DIPANEYLTL-EGKKFSTSRNWAIWVHEF 323
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 53.5 bits (127), Expect = 4e-08
Identities = 36/230 (15%), Positives = 60/230 (26%), Gaps = 13/230 (5%)
Query: 136 SYPFCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRF--GNWLREAR 193
+ + V + Y V +RF L E
Sbjct: 84 LLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGL 143
Query: 194 DWAISRNRYWGTPIPLWVSDDGEEIVCVGSIAEL--------HRLSGISVEKDLHRESVD 245
R + + I E +R +++ + +
Sbjct: 144 CPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSI 203
Query: 246 SVTIPSVRPGKPPLRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQ 305
S V G P V WF++ + L +P I + I +
Sbjct: 204 SRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK 263
Query: 306 TRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
F+ +R+L G +L DG+KMSK+ N DP
Sbjct: 264 PHAVFWP---TMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFA 310
Score = 47.7 bits (112), Expect = 2e-06
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 349 NYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
P +++L G +L DG+KMSK+ N DP +
Sbjct: 272 MLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFAL 311
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 218
Score = 47.8 bits (112), Expect = 1e-06
Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 20/211 (9%)
Query: 428 YNEAEGSTNIMDAWIISFSESLIEFVRKEMAAYRLYTVVPRLV-LFIDNLTNWYVRMNRR 486
+ E + + D ++ S +E + A L + L +WY+ +
Sbjct: 18 FQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKP 77
Query: 487 RLKGEGGPADCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMM 546
A L +L +VL +++++ P PFL LYQ L +
Sbjct: 78 A-----LKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG-------KEELALE 125
Query: 547 PQPNRGIIDQEIERSVKRMQSVVELGRVIRERVTIPIKYPLREAVVIHNDAQCLQE---- 602
P G D+E ER+ + ++ V R ++ +P +R V + + ++E
Sbjct: 126 AWPEPGGRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVR--VYLEGETAPVEENLEV 183
Query: 603 IRTL-ESYILQELNVRTVTFSTDKQKYGVSL 632
R L + +L E + + + + + L
Sbjct: 184 FRFLSRADLLPERPAKALVKAMPRVTARMPL 214
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 273
Score = 43.1 bits (100), Expect = 6e-05
Identities = 13/140 (9%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 438 MDAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTN--WYVRMNRRRLKGEGGPA 495
+D ++++ + + + FI+ + + +
Sbjct: 33 VDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSH 92
Query: 496 DCKVALNSLTKVLFTMVRVMAPYTPFLCEHLYQNLRHLTGRLERSIHFIMMPQPNRGIID 555
+ L ++L M +++AP E ++ + H+ + + ++ ++D
Sbjct: 93 IRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLD 152
Query: 556 --QEIERSVKRMQSVVELGR 573
+ + +E R
Sbjct: 153 KWRTFMNLRDDVNRALETAR 172
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 42.6 bits (99), Expect = 1e-04
Identities = 27/217 (12%), Positives = 51/217 (23%), Gaps = 45/217 (20%)
Query: 139 FCWRSDTPLIYKAVPSWFIRVQHMNQDLLKCNSDTYWVPEFVKEKRFGNWLREARDWAIS 198
S + + +F + ++ L E V K + + W IS
Sbjct: 136 RFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL-QEQVANKMQEWFESGLQQWDIS 194
Query: 199 RNRYWGTPIPLWVSDDGEEIVCVGSIAELHRLSGISVEKDLHRESVDSVTIPSVRPGKPP 258
R+ + + + V + + +K
Sbjct: 195 RDAPY-FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGD------------------ 235
Query: 259 LRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVIST 318
FD +++ S D +PA + F
Sbjct: 236 ----SVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLF-------- 283
Query: 319 ALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
+G V +G KMSKS+ +
Sbjct: 284 ------------VHGYVTV-NGAKMSKSRGTFIKAST 307
Score = 33.7 bits (76), Expect = 0.061
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 356 PPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
NL +G V +G KMSKS+ +
Sbjct: 277 RKPSNLFVHGYVTV-NGAKMSKSRGTFIKASTW 308
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 40.2 bits (93), Expect = 2e-04
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 30 QYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQEIV 89
+L D V ++ GTG + P DY + G+ + V
Sbjct: 43 HLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL-----KPV 97
Query: 90 CPVDASGCFT--APVSHFLGLYVKDADKPIIKHLKEQSRLV 128
++ G GL +A + ++ +E LV
Sbjct: 98 SVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLV 138
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 38.8 bits (89), Expect = 8e-04
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 27 KGLQYQPLFPYFKHVTSAFRVLTDTYVTEESGTGVVHQAPYFGEDDYRVCLAGGVITRDQ 86
K + + + T YV GTG + P + DY G+ +
Sbjct: 77 KTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKV 136
Query: 87 EIVCPVDASGCFTAPVSH---------FLGLYVKDADKPIIKHLKEQ 124
F G ++ + +I L+E+
Sbjct: 137 IERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEK 183
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 34.1 bits (77), Expect = 0.042
Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 11/113 (9%)
Query: 253 RPGKPPLRRVPEVFDCW-----FESGSMPYAQLHFPFDNRRDFDDRF-----PADFIAEG 302
R +R P F W E P + D G
Sbjct: 168 RVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGG 227
Query: 303 IDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDGQKMSKSKRNYPDPME 355
D + ST + +G+V+ D +KMSKS N+ +
Sbjct: 228 SDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRD 279
Score = 32.2 bits (72), Expect = 0.18
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 347 KRNYPDPMEPPFKNLIANGLVLSSDGQKMSKSKKNYPDPMEV 388
++ + +G+V+ D +KMSKS N+ +V
Sbjct: 240 AQSTCAHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDV 280
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 31.3 bits (69), Expect = 0.38
Identities = 12/110 (10%), Positives = 23/110 (20%), Gaps = 1/110 (0%)
Query: 281 HFPFDNRRDFDDRFPADFIAEGIDQTRGWFYTLLVISTALFKQAPFRNLIANGLVLAQDG 340
+ + +D G + + + G G
Sbjct: 183 EIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAG 242
Query: 341 QKMSKSKRNYPDPMEPPFKNLIANGLV-LSSDGQKMSKSKKNYPDPMEVR 389
K + + V + KMS SK N ++
Sbjct: 243 SSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLY 292
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white
birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
Length = 159
Score = 29.1 bits (65), Expect = 1.1
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 15/63 (23%)
Query: 80 GVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQSRLV-------SAGS 132
GV + E + A+ F A ++ D DK + K + V G+
Sbjct: 1 GVFNYETEATSVIPAARMFKA--------FILDGDKLVPKVAPQAISSVENIEGNGGPGT 52
Query: 133 VKH 135
+K
Sbjct: 53 IKK 55
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 27.5 bits (60), Expect = 2.9
Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 439 DAWIISFSESLIEFVRKEMAAYRLYTVVPRLVLFIDNLTNWYVRMNRRRLKGEGGPADCK 498
++ L +R + + + + + ++ N Y+ + + P + +
Sbjct: 29 AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKA-LNRYINEKKPWELFKKEPEEAR 87
Query: 499 VALNSLTKVLFTMVRVMAPYTPFLCEHLYQNL 530
L + + L ++ P P L + L
Sbjct: 88 AVLYRVVEGLRIASILLTPAMPDKMAELRRAL 119
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry
(Prunus avium), pru av 1 [TaxId: 42229]}
Length = 159
Score = 27.2 bits (60), Expect = 4.4
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 80 GVITRDQEIVCPVDASGCFTAPVSHFLGLYVKDADKPIIKHLKEQ 124
GV T + E + F A +V DAD + K +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKA--------FVLDADNLVPKIAPQA 37
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.3 bits (60), Expect = 6.9
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 549 PNRGIIDQEIERSVKRMQSVVELGRVIRERVTIP--IKYPLREAV 591
N ++ E +R+ +G +++++ IP + + A+
Sbjct: 253 QNEDQDEELEEDLEERLALDYSIGEQLKDKL-IPRAVDWFTGAAL 296
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 27.2 bits (59), Expect = 7.0
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 447 ESLIEFVRKEMAAYRLYTVVPRLVLFIDNL 476
E L +F +E+ Y +P + +D +
Sbjct: 469 EQLRQFSSEELPTYM----IPSYFIQLDKM 494
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia
coli [TaxId: 562]}
Length = 86
Score = 25.5 bits (56), Expect = 7.5
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 259 LRRVPEVFDCWFESGSMPYAQLHFPFDNRRDFDDRFPADFIA--EGIDQTRGWFYTLLVI 316
L + EV + ++ +G + + + I + I T TL+V+
Sbjct: 23 LESLDEVTEAYYTTGHYSI-FIKVMCRSIDAL-QHVLINKIQTIDEIQSTE----TLIVL 76
Query: 317 STALFKQAP 325
+ +
Sbjct: 77 QNPIMRTIK 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,558,080
Number of extensions: 125797
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 36
Length of query: 659
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 568
Effective length of database: 1,158,166
Effective search space: 657838288
Effective search space used: 657838288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)