BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1861
(661 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1
PE=1 SV=1
Length = 676
Score = 248 bits (634), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 156/200 (78%)
Query: 188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCK 247
+LED++IVSE+QF EN+ GG+SA+G FVS D G GG L +ESR TL N +
Sbjct: 31 VLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGR 90
Query: 248 RNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLI 307
R+I L +QL+LNQHCL+T+FN +KMA+S++LT+GR+ V AAC+Y+ CR EGT H+L+
Sbjct: 91 RHIHHLGSQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 308 DFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRI 367
D S+LLQ+ ++ LG+T+L L++ LCI+ P++DPCLY+ R+++ L+FG K HEV+MTALR+
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRL 210
Query: 368 LQRMKKDMLHSGRRPNGLIG 387
LQRMK+D +H+GRRP+GL G
Sbjct: 211 LQRMKRDWMHTGRRPSGLCG 230
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 12/133 (9%)
Query: 437 PTPAMLGMA-------TNQDAERNDQIVDDAEDDLGDIDDEEINSYILTEGEATNKAKLW 489
PT A LG++ ++ + D D E DL IDD EI+ YIL E EA KA+LW
Sbjct: 415 PTAASLGISDSIRECISSPSGDPKDS-SGDGELDLSGIDDLEIDRYILNESEARVKAELW 473
Query: 490 EVLNREYLTLQAERKAR----EEVEGKKEKKKRKPKANKATSVAKTAGEAIEKMLKEKKI 545
N EYL Q E++AR +E+ KE K +K + +A TAGEAIEKML++KKI
Sbjct: 474 MRENAEYLREQKEKEARIAKEKELGIYKEHKPKKSCKRREPILASTAGEAIEKMLEQKKI 533
Query: 546 STKINYDVLKSLD 558
S+KINY VL+ L+
Sbjct: 534 SSKINYSVLRDLN 546
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1
PE=1 SV=1
Length = 677
Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/200 (55%), Positives = 156/200 (78%)
Query: 188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCK 247
+LED++IVSE+QF E++ GG+SA+G FVS D G GG L +ESR TL N +
Sbjct: 31 VLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGR 90
Query: 248 RNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLI 307
R+I L NQL+LNQHCL+T+FN +KMA+SR+LT+GR+ V AAC+Y+ CR EGT H+L+
Sbjct: 91 RHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 308 DFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRI 367
D S+LLQ+ ++ LG+T+L L++ LCI+ P++DPCLY+ R+++ L+FG K HEV+MTALR+
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRL 210
Query: 368 LQRMKKDMLHSGRRPNGLIG 387
LQRMK+D +H+GRRP+GL G
Sbjct: 211 LQRMKRDWMHTGRRPSGLCG 230
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 12/132 (9%)
Query: 437 PTPAMLGMA-------TNQDAERNDQIVDDAEDDLGDIDDEEINSYILTEGEATNKAKLW 489
PT A LG++ ++Q ++ D D E DL IDD EI+ YIL E EA KA+LW
Sbjct: 416 PTAASLGISDSIRECISSQSSDPKD-ASGDGELDLSGIDDLEIDRYILNESEARVKAELW 474
Query: 490 EVLNREYLTLQAERKAR----EEVEGKKEKKKRKPKANKATSVAKTAGEAIEKMLKEKKI 545
N EYL Q E++AR +E+ KE K +K + A TA EAIEKML++KKI
Sbjct: 475 MRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKI 534
Query: 546 STKINYDVLKSL 557
S+KINY VL+ L
Sbjct: 535 SSKINYSVLRGL 546
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1
Length = 142
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 87/89 (97%)
Query: 1 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDVNDNNL Y
Sbjct: 21 MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIHNFVEVLNEYFHNVCELDLVFNFYK
Sbjct: 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRNFKI+YRRYAGLYFCICVDVNDNNL YLEAIHNFVEVLNEYFHNVCELDLVFNF
Sbjct: 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVLRS 178
YKVYTVVDEMFLAGEIRETSQTKVLK+L +L+S
Sbjct: 108 YKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 87/89 (97%)
Query: 1 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDVNDNNL Y
Sbjct: 21 MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIHNFVEVLNEYFHNVCELDLVFNFYK
Sbjct: 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRNFKI+YRRYAGLYFCICVDVNDNNL YLEAIHNFVEVLNEYFHNVCELDLVFNF
Sbjct: 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVLRS 178
YKVYTVVDEMFLAGEIRETSQTKVLK+L +L+S
Sbjct: 108 YKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 87/89 (97%)
Query: 1 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDVNDNNL Y
Sbjct: 21 MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIHNFVEVLNEYFHNVCELDLVFNFYK
Sbjct: 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRNFKI+YRRYAGLYFCICVDVNDNNL YLEAIHNFVEVLNEYFHNVCELDLVFNF
Sbjct: 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVLRS 178
YKVYTVVDEMFLAGEIRETSQTKVLK+L +L+S
Sbjct: 108 YKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 87/89 (97%)
Query: 1 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDVNDNNL Y
Sbjct: 21 MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIHNFVEVLNEYFHNVCELDLVFNFYK
Sbjct: 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRNFKI+YRRYAGLYFCICVDVNDNNL YLEAIHNFVEVLNEYFHNVCELDLVFNF
Sbjct: 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVLRS 178
YKVYTVVDEMFLAGEIRETSQTKVLK+L +L+S
Sbjct: 108 YKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 87/89 (97%)
Query: 1 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDVNDNNL Y
Sbjct: 21 MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIHNFVEVLNEYFHNVCELDLVFNFYK
Sbjct: 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRNFKI+YRRYAGLYFCICVDVNDNNL YLEAIHNFVEVLNEYFHNVCELDLVFNF
Sbjct: 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVLRS 178
YKVYTVVDEMFLAGEIRETSQTKVLK+L +L+S
Sbjct: 108 YKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2
Length = 492
Score = 176 bits (445), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 130/200 (65%), Gaps = 1/200 (0%)
Query: 188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCK 247
++E IVSE+ F E + G G VS+D + + FGG R + ESRE+T+ N +
Sbjct: 28 VVEQDAIVSEVTFGEASTGAAVVQGSLVSND-QTHARTFGGPYRNQGSVESRELTIANGR 86
Query: 248 RNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLI 307
R IS+L L+LN+ +E + + +A++ N KGRR V A+C+Y+ CR+ TSH+LI
Sbjct: 87 RRISALAIALKLNERHIEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLI 146
Query: 308 DFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRI 367
DFS++LQI +F+LG T+L+L + L ++P +DP LY+ R+++ L+FG +TH V A+R+
Sbjct: 147 DFSDILQINVFKLGSTFLKLCRVLRPNLPLLDPSLYISRFASLLEFGPETHRVANDAIRL 206
Query: 368 LQRMKKDMLHSGRRPNGLIG 387
+ RM +D + GRRP G+ G
Sbjct: 207 VARMNRDWMQIGRRPAGICG 226
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 476 ILTEGEATNKAKLWEVLNREYLTLQAERKAREEVEGKK-------EKKKRKPKANKATSV 528
+L + E K ++W LN++YL + + + + + KK ++++ +P+ + + +
Sbjct: 398 LLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRRYRPRDSTSDGI 457
Query: 529 AKTAGEAIEKMLKEKKISTKINYDVLKSL 557
A TA E+ ++M++++ S KINY+ L L
Sbjct: 458 ADTAAESAKEMMQQRAFSKKINYEALDML 486
>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=TDS4 PE=3 SV=1
Length = 553
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Query: 179 RCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRES 238
RCG +LE++ IVSE+QF E++ G G V +D F G + + ES
Sbjct: 33 RCGT-----VLEENPIVSEVQFGESSSGAAMVQGAMVGADQARAT--FAGGRQNAM--ES 83
Query: 239 REITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCR 298
RE TL N KR I + L++ + E + +++AL+ N +GRR V A C+Y+ CR
Sbjct: 84 REQTLSNGKRKIKRIAAALKIPDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACR 143
Query: 299 LEGTSHLLIDFSELLQICIFELGRTYLRLSQALCI-SIPSMDPCLYVLRYSNRLDFGAKT 357
E T H+LIDFS LQI ++ LG T+L++ +AL I S+P DP L++ + +LDF K
Sbjct: 144 KERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITSLPLADPSLFIQHFVEKLDFKDKA 203
Query: 358 HEVTMTALRILQRMKKDMLHSGRRPNGLIG 387
+V A+++ RM D +H GRRP G+ G
Sbjct: 204 TKVAKDAVKLAHRMAADWIHEGRRPAGIAG 233
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 466 DIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAERKAREEVE-----GKKEKKKRKP 520
D DDE + LTE E K ++W LN +YL Q +++ ++E + K +
Sbjct: 433 DDDDEIVLESKLTEEEVAIKERIWTGLNHDYLVEQEKKRLKQEADELTGNTSKSSSGNRR 492
Query: 521 KANKATSVA-----------------KTAGEAIEKMLKEKKISTKINYDVLKSL 557
K NK++ A ++A ++ + + + +S KINYD LK L
Sbjct: 493 KRNKSSLPAELRKELGDIDLDEDGTPRSAADSAKMYISKTSVSKKINYDSLKGL 546
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1
SV=1
Length = 596
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 117/201 (58%), Gaps = 7/201 (3%)
Query: 188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCK 247
+ ED+ IVSE+ F E + G G F+ + G AL ESRE TL+N +
Sbjct: 31 VSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSAL------ESREATLNNAR 84
Query: 248 RNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLI 307
R + ++ L + ++ + +F YK+AL+ N +GRR V A+C+Y+ CR E T H+LI
Sbjct: 85 RKLRAVSYALHIPEYITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 308 DFSELLQICIFELGRTYLRLSQALCIS-IPSMDPCLYVLRYSNRLDFGAKTHEVTMTALR 366
DFS LQ+ ++ +G T+L++ + L I+ +P DP L++ ++ +LD K +V A++
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQHFAEKLDLADKKIKVVKDAVK 204
Query: 367 ILQRMKKDMLHSGRRPNGLIG 387
+ QRM KD + GRRP G+ G
Sbjct: 205 LAQRMSKDWMFEGRRPAGIAG 225
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 457 VDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAERKAREEVE 510
V D D+L D+DDEE+N+++L E + K ++W LN ++L Q ++ ++E +
Sbjct: 455 VSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEAD 508
>sp|P46070|TF3B_KLULA Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
Length = 556
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
Query: 188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCK 247
+ E++ IVSE+ F E ++G G FVS++ + G SRE TL+N +
Sbjct: 39 VTEENSIVSEVTFGEASNGAAVIQGAFVSANQ---AHPTFMSHSGQNALMSRETTLNNAR 95
Query: 248 RNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLI 307
R + ++ L + ++ + +F Y++ALS N +GR+ V AAC+Y+ CR E T H+LI
Sbjct: 96 RKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 308 DFSELLQICIFELGRTYLRLSQAL-CISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALR 366
DFS LQ+ ++ +G T+L+L++ L + +P DP L++ ++ +L+ G K +V A++
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVK 215
Query: 367 ILQRMKKDMLHSGRRPNGLIG 387
+ Q M +D ++ GRRP G+ G
Sbjct: 216 LAQTMSRDWMYEGRRPAGIAG 236
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 27/128 (21%)
Query: 457 VDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAERKAREEVE------ 510
V D ++L D+DD E++S++L E + K ++W +N +YL Q ++ ++E +
Sbjct: 425 VSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASGNT 484
Query: 511 -GKKEKKKRKPKANKATSVAKTAGE--------------------AIEKMLKEKKISTKI 549
+K++ KR + + S+ K + ++ +L++ S KI
Sbjct: 485 SLRKKRSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKTTFSKKI 544
Query: 550 NYDVLKSL 557
NYD + L
Sbjct: 545 NYDAINGL 552
>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aps-2 PE=3 SV=1
Length = 143
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 73/88 (82%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRN K+VYRRYAGL+FC CVD NDN L YLEAIH FVEVL+ +F NVCELDLVFNF
Sbjct: 49 NFVEFRNHKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNF 108
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
YKVY ++DE+FLAGEI ETS+ VL L
Sbjct: 109 YKVYAILDEVFLAGEIEETSKQVVLTRL 136
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKH-TNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYL 61
+ D+EK KL E+H +V RD K+ +NFVEFRN K+VYRRYAGL+FC CVD NDN L YL
Sbjct: 23 YSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYRRYAGLFFCACVDTNDNELAYL 82
Query: 62 EAIHNFVEVLNEYFHNVCELDLVFNFYK 89
EAIH FVEVL+ +F NVCELDLVFNFYK
Sbjct: 83 EAIHFFVEVLDSFFGNVCELDLVFNFYK 110
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 73/88 (82%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FRN KIVYRRYAGL+FC CVD NDN L +LEAIH FVEVL+ +F NVCELDLVFNF
Sbjct: 49 NFVEFRNNKIVYRRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNF 108
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
YKVY ++DE+FLAGEI ETS+ VL L
Sbjct: 109 YKVYAILDEVFLAGEIEETSKQVVLTRL 136
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKH-TNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYL 61
F D++K KL EVH +V RD K+ +NFVEFRN KIVYRRYAGL+FC CVD NDN L +L
Sbjct: 23 FSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYRRYAGLFFCACVDTNDNELAFL 82
Query: 62 EAIHNFVEVLNEYFHNVCELDLVFNFYK 89
EAIH FVEVL+ +F NVCELDLVFNFYK
Sbjct: 83 EAIHFFVEVLDAFFGNVCELDLVFNFYK 110
>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2 PE=3
SV=1
Length = 145
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Query: 86 NFYKF-RNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFN 144
NF +F R+ KIVYRRYAGL+FC+CVD DN L YLEAIH FVEVL+++F NVCELDLVFN
Sbjct: 50 NFVEFKRSTKIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFN 109
Query: 145 FYKVYTVVDEMFLAGEIRETSQTKVLKEL 173
FYKVY ++DE+FLAGEI ETS+ VL L
Sbjct: 110 FYKVYAILDEVFLAGEIEETSKQVVLTRL 138
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKH-TNFVEF-RNFKIVYRRYAGLYFCICVDVNDNNLCY 60
+ D+EK KL EVH +V RD K+ +NFVEF R+ KIVYRRYAGL+FC+CVD DN L Y
Sbjct: 24 YSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCVCVDATDNELAY 83
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIH FVEVL+++F NVCELDLVFNFYK
Sbjct: 84 LEAIHFFVEVLDQFFGNVCELDLVFNFYK 112
>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2 PE=3
SV=1
Length = 145
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 86 NFYKF-RNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFN 144
NF +F R+ KIVYRRYAGL+FC CVD DN L YLEAIH FVEVL+++F NVCELDLVFN
Sbjct: 50 NFVEFKRSTKIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFN 109
Query: 145 FYKVYTVVDEMFLAGEIRETSQTKVLKEL 173
FYKVY ++DE+FLAGEI ETS+ VL L
Sbjct: 110 FYKVYAILDEVFLAGEIEETSKQVVLTRL 138
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKH-TNFVEF-RNFKIVYRRYAGLYFCICVDVNDNNLCY 60
+ D+EK KL EVH +V RD K+ +NFVEF R+ KIVYRRYAGL+FC CVD DN L Y
Sbjct: 24 YSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCACVDATDNELAY 83
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LEAIH FVEVL+++F NVCELDLVFNFYK
Sbjct: 84 LEAIHFFVEVLDQFFGNVCELDLVFNFYK 112
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2
SV=1
Length = 142
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 72/88 (81%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FR K++YRRYAGL+F +CVD+ DN L YLE+IH FVE+L+ +F NVCELDLVFNF
Sbjct: 48 NFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
+KVY ++DE LAGE++ETS+ +++ +
Sbjct: 108 HKVYLILDEFILAGELQETSKRAIIERM 135
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 4 DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 63
++ EK K+ EVH +V RDAK TNFVEFR K++YRRYAGL+F +CVD+ DN L YLE+
Sbjct: 24 EESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLES 83
Query: 64 IHNFVEVLNEYFHNVCELDLVFNFYK 89
IH FVE+L+ +F NVCELDLVFNF+K
Sbjct: 84 IHLFVEILDHFFSNVCELDLVFNFHK 109
>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1
PE=3 SV=2
Length = 142
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FR +IVYRRYAGL+F +CVD DN L LEAIH FVEVL+ YF NVCELDLVFNF
Sbjct: 48 NFVEFRTHRIVYRRYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
YKVY ++DE+FLAGE+ E S+ +L+ + L
Sbjct: 108 YKVYAIIDEVFLAGELMEPSKHVILQRMEFL 138
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 68/87 (78%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLE 62
++D EK+KL E+H +V R+ K TNFVEFR +IVYRRYAGL+F +CVD DN L LE
Sbjct: 23 YEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYRRYAGLFFSVCVDPTDNELFCLE 82
Query: 63 AIHNFVEVLNEYFHNVCELDLVFNFYK 89
AIH FVEVL+ YF NVCELDLVFNFYK
Sbjct: 83 AIHLFVEVLDAYFGNVCELDLVFNFYK 109
>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1
Length = 132
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 70/93 (75%)
Query: 4 DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 63
+D EK K+ EVH +V RD K TNFVEFR K++YRRYAGL+F ICVD+ DN L YLE
Sbjct: 24 EDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSICVDITDNELAYLEC 83
Query: 64 IHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIV 96
IH FVE+L+ +F NVCELDLVFNF+K + I+
Sbjct: 84 IHLFVEILDHFFSNVCELDLVFNFHKVYRYLIL 116
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +FR K++YRRYAGL+F ICVD+ DN L YLE IH FVE+L+ +F NVCELDLVFNF
Sbjct: 48 NFVEFRTHKVIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNF 107
Query: 146 YKV--YTVVDEMFLAGEIRETSQTK 168
+KV Y ++DE LAGE++ETS+ +
Sbjct: 108 HKVYRYLILDEFILAGELQETSKRQ 132
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF ++ N K+VYRRYAGLYFC CVD DN+L LE IH FVE+L+ +F NVCELDL+FNF
Sbjct: 49 NFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNF 108
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
YKV ++DE+ L GEI E+++ VL+ + L
Sbjct: 109 YKVSAILDEIILGGEIGESNKKSVLERIEAL 139
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYL 61
FDDDEK +L +H +++ R+ K NF+E+ N K+VYRRYAGLYFC CVD DN+L L
Sbjct: 23 FDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAIL 82
Query: 62 EAIHNFVEVLNEYFHNVCELDLVFNFYK 89
E IH FVE+L+ +F NVCELDL+FNFYK
Sbjct: 83 EMIHFFVEILDSFFGNVCELDLIFNFYK 110
>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2
PE=2 SV=1
Length = 162
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 69/86 (80%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF ++R +K+VY+RYA LYFC+C+D DN L LE IH++VE+L+ YF +VCELDL+FNF
Sbjct: 48 NFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLK 171
+K Y ++DE+ +AGE++E+S+ V +
Sbjct: 108 HKAYYILDELLIAGELQESSKKTVAR 133
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 64/87 (73%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLE 62
+ E+ K+I E+ V+ R K NFVE+R +K+VY+RYA LYFC+C+D DN L LE
Sbjct: 23 YAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLE 82
Query: 63 AIHNFVEVLNEYFHNVCELDLVFNFYK 89
IH++VE+L+ YF +VCELDL+FNF+K
Sbjct: 83 IIHHYVEILDRYFGSVCELDLIFNFHK 109
>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1
PE=2 SV=1
Length = 161
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 69/86 (80%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF ++R +K+VY+RYA LYFC+C+D DN L LE IH++VE+L+ YF +VCELDL+FNF
Sbjct: 48 NFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLK 171
+K Y ++DE+ +AGE++E+S+ V +
Sbjct: 108 HKAYYILDELLIAGELQESSKKTVAR 133
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 64/87 (73%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLE 62
+ E+ K+I E+ V+ R K NF+E+R +K+VY+RYA LYFC+C+D DN L LE
Sbjct: 23 YTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLE 82
Query: 63 AIHNFVEVLNEYFHNVCELDLVFNFYK 89
IH++VE+L+ YF +VCELDL+FNF+K
Sbjct: 83 IIHHYVEILDRYFGSVCELDLIFNFHK 109
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 68/86 (79%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +++ +KI+++RYA LYF +C D DN L LE IH+FVE+L+ YF NVCELDL+FNF
Sbjct: 49 NFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNF 108
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLK 171
+K Y ++DE+ +AGE++ETS+ VL+
Sbjct: 109 HKAYYILDELIMAGELQETSKKTVLR 134
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 61/87 (70%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLE 62
F + EK + E+ +V R K NF+E++ +KI+++RYA LYF +C D DN L LE
Sbjct: 24 FTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLE 83
Query: 63 AIHNFVEVLNEYFHNVCELDLVFNFYK 89
IH+FVE+L+ YF NVCELDL+FNF+K
Sbjct: 84 IIHHFVEILDRYFGNVCELDLIFNFHK 110
>sp|Q00381|AP2S_YEAST AP-2 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS2 PE=1 SV=1
Length = 147
Score = 110 bits (274), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Query: 86 NFYKFRN-FKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFN 144
NF +F + K++YRRYAGLYF + VD+ D+ YL IH FVEVL+ +F NVCELD+VFN
Sbjct: 52 NFVEFSDSTKLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFN 111
Query: 145 FYKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
FYKVY ++DEMF+ GEI+E S+ +L+ L +L
Sbjct: 112 FYKVYMIMDEMFIGGEIQEISKDMLLERLSIL 143
Score = 95.5 bits (236), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 4 DDDEKQKLIEEVHAVVTVRDAKH-TNFVEFRN-FKIVYRRYAGLYFCICVDVNDNNLCYL 61
D Q I +++ +++ RD KH +NFVEF + K++YRRYAGLYF + VD+ D+ YL
Sbjct: 27 DPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKLIYRRYAGLYFVMGVDLLDDEPIYL 86
Query: 62 EAIHNFVEVLNEYFHNVCELDLVFNFYK 89
IH FVEVL+ +F NVCELD+VFNFYK
Sbjct: 87 CHIHLFVEVLDAFFGNVCELDIVFNFYK 114
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 65/86 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++R+ KIVY+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF
Sbjct: 47 SFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNF 106
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLK 171
K Y ++DE L GE++ETS+ VLK
Sbjct: 107 EKAYFILDEFLLGGEVQETSKKNVLK 132
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D EK+K+ E+ V R K +F+E+R+ KIVY+RYA LYFC ++ DN L LE I
Sbjct: 24 DKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEII 83
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF +VCELD++FNF K
Sbjct: 84 HRYVELLDKYFGSVCELDIIFNFEK 108
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 65/86 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++R+ KIVY+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF
Sbjct: 47 SFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNF 106
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLK 171
K Y ++DE L GE++ETS+ VLK
Sbjct: 107 EKAYFILDEFLLGGEVQETSKKNVLK 132
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D EK+K+ E+ V R K +F+E+R+ KIVY+RYA LYFC ++ DN L LE I
Sbjct: 24 DKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEII 83
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF +VCELD++FNF K
Sbjct: 84 HRYVELLDKYFGSVCELDIIFNFEK 108
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 65/86 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++R+ KIVY+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF
Sbjct: 47 SFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNF 106
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLK 171
K Y ++DE L GE++ETS+ VLK
Sbjct: 107 EKAYFILDEFLLGGEVQETSKKNVLK 132
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D EK+K+ E+ V R K +F+E+R+ KIVY+RYA LYFC ++ DN L LE I
Sbjct: 24 DKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEII 83
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF +VCELD++FNF K
Sbjct: 84 HRYVELLDKYFGSVCELDIIFNFEK 108
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 65/85 (76%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF +++ KIVYRRYA L+F ++ +DN L LE IH FVE L++YF NVCELDL+FNF
Sbjct: 49 NFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNF 108
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVL 170
K Y V++E+ LAGE++E+S+T VL
Sbjct: 109 EKAYYVMEELLLAGELQESSKTNVL 133
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 59/83 (71%)
Query: 7 EKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHN 66
E+ K+I +V ++V R K NFVE++ KIVYRRYA L+F ++ +DN L LE IH
Sbjct: 28 ERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHK 87
Query: 67 FVEVLNEYFHNVCELDLVFNFYK 89
FVE L++YF NVCELDL+FNF K
Sbjct: 88 FVECLDKYFGNVCELDLIFNFEK 110
>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1
Length = 157
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 66/88 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++R+ K+VY+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF
Sbjct: 47 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNF 106
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
K Y ++DE + G++++TS+ VLK +
Sbjct: 107 EKAYFILDEFLMGGDVQDTSKKSVLKAI 134
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D E++K++ E+ VV R K +F+E+R+ K+VY+RYA LYFC ++ DN L LE I
Sbjct: 24 DKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELI 83
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF +VCELD++FNF K
Sbjct: 84 HRYVELLDKYFGSVCELDIIFNFEK 108
>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1
Length = 158
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 66/88 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++R+ K+VY+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF
Sbjct: 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
K Y ++DE + G++++TS+ VLK +
Sbjct: 108 EKAYFILDEFLMGGDVQDTSKKSVLKAI 135
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D E++K++ E+ VV R K +F+E+R+ K+VY+RYA LYFC ++ DN L LE I
Sbjct: 25 DKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELI 84
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF +VCELD++FNF K
Sbjct: 85 HRYVELLDKYFGSVCELDIIFNFEK 109
>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
Length = 158
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 66/88 (75%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++R+ K+VY+RYA LYFC ++ DN L LE IH +VE+L++YF +VCELD++FNF
Sbjct: 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
K Y ++DE + G++++TS+ VLK +
Sbjct: 108 EKAYFILDEFLMGGDVQDTSKKSVLKAI 135
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D E++K++ E+ VV R K +F+E+R+ K+VY+RYA LYFC ++ DN L LE I
Sbjct: 25 DKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELI 84
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF +VCELD++FNF K
Sbjct: 85 HRYVELLDKYFGSVCELDIIFNFEK 109
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 63/88 (71%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++ K+VY+RYA LYFC ++ DN L LE +H +VE+L++YF NVCELD++FNF
Sbjct: 48 SFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
K Y ++DE + GEI+ETS+ +K +
Sbjct: 108 EKAYFILDEFIIGGEIQETSKKIAVKAI 135
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 62/89 (69%)
Query: 1 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
+ D E++K+ E+ ++ R + ++FV+++ K+VY+RYA LYFC ++ DN L
Sbjct: 21 ITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLT 80
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
LE +H +VE+L++YF NVCELD++FNF K
Sbjct: 81 LEIVHRYVELLDKYFGNVCELDIIFNFEK 109
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 63/88 (71%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++ K+VY+RYA LYFC ++ DN L LE +H +VE+L++YF NVCELD++FNF
Sbjct: 48 SFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
K Y ++DE + GEI+ETS+ +K +
Sbjct: 108 EKAYFILDEFIIGGEIQETSKKTAVKAI 135
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 60/85 (70%)
Query: 5 DDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAI 64
D E++K+ ++ V R + ++F++++ K+VY+RYA LYFC ++ DN L LE +
Sbjct: 25 DKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIV 84
Query: 65 HNFVEVLNEYFHNVCELDLVFNFYK 89
H +VE+L++YF NVCELD++FNF K
Sbjct: 85 HRYVELLDKYFGNVCELDIIFNFEK 109
>sp|Q54WW3|AP1S1_DICDI AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1
PE=3 SV=1
Length = 156
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
NF ++R F IVY+R+A L+F + D DN L LE+I FV VL+ F N+CELDL++ F
Sbjct: 48 NFVQWREFTIVYQRFASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEF 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKEL 173
+ Y V+DE L G ++E+S ++L+ +
Sbjct: 108 QRAYQVLDEFLLTGHLQESSSKEILRAI 135
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 7 EKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHN 66
EK + EV V R K NFV++R F IVY+R+A L+F + D DN L LE+I
Sbjct: 27 EKNRATREVMNQVLSRSPKFCNFVQWREFTIVYQRFASLFFVMVTDSTDNELVTLESIQR 86
Query: 67 FVEVLNEYFHNVCELDLVFNF 87
FV VL+ F N+CELDL++ F
Sbjct: 87 FVVVLDIVFGNICELDLIYEF 107
>sp|P35181|AP1S1_YEAST AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APS1 PE=1 SV=1
Length = 156
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVN-DNNLCYLEAIHNFVEVLNEYFHNVCELDLVFN 144
N ++ + K+VY+RYA LYF + + + DN L LE IH FVE ++ YF NVCELD++FN
Sbjct: 50 NIIEYNDHKVVYKRYASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFN 109
Query: 145 FYKVYTVVDEMFLA-GEIRETSQTKVLKELRVL 176
F KVY +++EM + G I E+S+ +VL + V+
Sbjct: 110 FSKVYDILNEMIMCDGSIAESSRKEVLHHVTVM 142
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 7 EKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVN-DNNLCYLEAIH 65
EK K+++++ + R K N +E+ + K+VY+RYA LYF + + + DN L LE IH
Sbjct: 29 EKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKRYASLYFIVGMTPDVDNELLTLEIIH 88
Query: 66 NFVEVLNEYFHNVCELDLVFNFYK 89
FVE ++ YF NVCELD++FNF K
Sbjct: 89 RFVETMDTYFGNVCELDIIFNFSK 112
>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
Length = 144
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 65/91 (71%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++++FK++YR+YA L+ + V+ +N + E IHNFVEVL+EYF V ELD++FN
Sbjct: 48 SFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNL 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
KV+ ++DEM L G I ET++ ++L L +L
Sbjct: 108 DKVHIILDEMVLNGCIVETNRARILAPLLIL 138
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 5 DDEKQKLIE-EVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 63
D K+ L+E EV R + +F+E+++FK++YR+YA L+ + V+ +N + E
Sbjct: 24 DINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEF 83
Query: 64 IHNFVEVLNEYFHNVCELDLVFNFYK 89
IHNFVEVL+EYF V ELD++FN K
Sbjct: 84 IHNFVEVLDEYFSRVSELDIMFNLDK 109
>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
Length = 144
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 65/91 (71%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++++FK++YR+YA L+ + V+ +N + E IHNFVEVL++YF V ELD++FN
Sbjct: 48 SFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNL 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
KV+ ++DEM L G I ET++ ++L L +L
Sbjct: 108 DKVHIILDEMVLNGCIVETNRARILAPLLIL 138
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 22 RDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCEL 81
R + +F+E+++FK++YR+YA L+ + V+ +N + E IHNFVEVL++YF V EL
Sbjct: 42 RSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSEL 101
Query: 82 DLVFNFYK 89
D++FN K
Sbjct: 102 DIMFNLDK 109
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 65/91 (71%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F + RN+KIVYRRYA L+F + VD ++N L LE IH VE ++++F NVCELD++F+
Sbjct: 49 SFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHL 108
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
K + +++EM + G I ETS+ +L ++++
Sbjct: 109 EKAHFMLEEMVMNGCIVETSKANILSPIQLM 139
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 6 DEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIH 65
+E++ L E+ R+ + +FVE RN+KIVYRRYA L+F + VD ++N L LE IH
Sbjct: 27 EERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIH 86
Query: 66 NFVEVLNEYFHNVCELDLVFNFYK 89
VE ++++F NVCELD++F+ K
Sbjct: 87 LLVETMDKHFGNVCELDIMFHLEK 110
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 64/91 (70%)
Query: 86 NFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNF 145
+F ++++FK++YR+YA L+ + V+ +N + E IHNFVEVL+ YF V ELD++FN
Sbjct: 48 SFIEYKDFKLIYRQYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNL 107
Query: 146 YKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
KV+ ++DEM L G I ET++ ++L L +L
Sbjct: 108 DKVHIILDEMVLNGCIVETNRARILAPLLIL 138
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 5 DDEKQKLIE-EVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 63
D K+ L+E EV R ++ +F+E+++FK++YR+YA L+ + V+ +N + E
Sbjct: 24 DINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQYAALFVVVGVNDTENEMAIYEF 83
Query: 64 IHNFVEVLNEYFHNVCELDLVFNFYK 89
IHNFVEVL+ YF V ELD++FN K
Sbjct: 84 IHNFVEVLDGYFSRVSELDIMFNLDK 109
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 54/78 (69%)
Query: 94 KIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 153
++VY+ YA LYF + D ++N L L+ I VE L++ F NVCELD+VFN+ K++ V+D
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120
Query: 154 EMFLAGEIRETSQTKVLK 171
E+ G++ ETS +V+K
Sbjct: 121 EIVFGGQVLETSSAEVMK 138
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 6 DEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIVYRRYAGLYFCICVDVNDNNLCY 60
+++Q+LI V +V+ R +NF+E + ++VY+ YA LYF + D ++N L
Sbjct: 26 EKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENELAM 85
Query: 61 LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
L+ I VE L++ F NVCELD+VFN+ K
Sbjct: 86 LDLIQVLVETLDKCFSNVCELDIVFNYSK 114
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 91 RNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYT 150
++ KI+YR YA L+F CVD +++ L ++ I FVE L++ F NVCELDL+F+ KV+
Sbjct: 61 KDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHY 120
Query: 151 VVDEMFLAGEIRETSQTKVLKELRV 175
++DEM + G + ET+ T + +
Sbjct: 121 ILDEMVMGGLVLETNPTIIFSNYEI 145
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 2 NFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRN--------FKIVYRRYAGLYFCICVDV 53
++ ++++Q++I E+ +V+ R + NF+E N KI+YR YA L+F CVD
Sbjct: 22 HYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFDKDTKIIYRHYATLFFIFCVDS 81
Query: 54 NDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFN 86
+++ L ++ I FVE L++ F NVCELDL+F+
Sbjct: 82 SESELSIIDLIQTFVESLDKCFENVCELDLIFH 114
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 94 KIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 153
K++YR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121
Query: 154 EMFLAGEIRETSQTKVLKEL 173
EM + G + ET+ +++ ++
Sbjct: 122 EMVMGGMVLETNMNEIVTQI 141
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
+ +D +Q++I E +V+ RD NF+E + K++YR YA LYF CVD +++
Sbjct: 23 YSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRN 92
L L+ I FVE L++ F NVCELDL+F+ K N
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHN 118
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 94 KIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 153
K++YR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121
Query: 154 EMFLAGEIRETSQTKVLKEL 173
EM + G + ET+ +++ ++
Sbjct: 122 EMVMGGMVLETNMNEIVTQI 141
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
+ +D +Q++I E +V+ RD NF+E + K++YR YA LYF CVD +++
Sbjct: 23 YSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRN 92
L L+ I FVE L++ F NVCELDL+F+ K N
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHN 118
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 94 KIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 153
K++YR YA LYF CVD +++ L L+ I FVE L++ F NVCELDL+F+ KV+ ++
Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121
Query: 154 EMFLAGEIRETSQTKVLKEL 173
EM + G + ET+ +++ ++
Sbjct: 122 EMVMGGMVLETNMNEIVTQI 141
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
+ +D +Q++I E +V+ RD NF+E + K++YR YA LYF CVD +++
Sbjct: 23 YSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRN 92
L L+ I FVE L++ F NVCELDL+F+ K N
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHN 118
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 13/133 (9%)
Query: 69 EVLNEYFH-------NVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 121
+++ E FH N+C + ++K++YR YA LYF CVD +++ L L+
Sbjct: 30 QIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDL 89
Query: 122 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKEL----RVLR 177
I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++ ++ R+ +
Sbjct: 90 IQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEK 149
Query: 178 SRCGPS--PWRHI 188
S G S P R +
Sbjct: 150 SEGGLSAAPARAV 162
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
F ++ +Q+++ E +V RD NF+E ++K++YR YA LYF CVD +++
Sbjct: 23 FPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
L L+ I FVE L++ F NVCELDL+F+ K
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHMDK 115
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 13/133 (9%)
Query: 69 EVLNEYFH-------NVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 121
+++ E FH N+C + ++K++YR YA LYF CVD +++ L L+
Sbjct: 30 QIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDL 89
Query: 122 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKEL----RVLR 177
I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++ ++ R+ +
Sbjct: 90 IQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEK 149
Query: 178 SRCGPS--PWRHI 188
S G S P R +
Sbjct: 150 SEGGLSAAPARAV 162
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
F ++ +Q+++ E +V RD NF+E ++K++YR YA LYF CVD +++
Sbjct: 23 FPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
L L+ I FVE L++ F NVCELDL+F+ K
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHMDK 115
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 13/133 (9%)
Query: 69 EVLNEYFH-------NVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 121
+++ E FH N+C + ++K++YR YA LYF CVD +++ L L+
Sbjct: 30 QIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDL 89
Query: 122 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKEL----RVLR 177
I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++ ++ R+ +
Sbjct: 90 IQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEK 149
Query: 178 SRCGPS--PWRHI 188
S G S P R +
Sbjct: 150 SEGGLSAAPARAV 162
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
F ++ +Q+++ E +V RD NF+E ++K++YR YA LYF CVD +++
Sbjct: 23 FPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
L L+ I FVE L++ F NVCELDL+F+ K
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHMDK 115
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 13/133 (9%)
Query: 69 EVLNEYFH-------NVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEA 121
+++ E FH N+C + ++K++YR YA LYF CVD +++ L L+
Sbjct: 30 QIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDL 89
Query: 122 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKEL----RVLR 177
I FVE L++ F NVCELDL+F+ KV+ ++ E+ + G + ET+ +++ ++ R+ +
Sbjct: 90 IQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEK 149
Query: 178 SRCGPS--PWRHI 188
S G S P R +
Sbjct: 150 SEGGLSAAPARAV 162
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDN 56
F ++ +Q+++ E +V RD NF+E ++K++YR YA LYF CVD +++
Sbjct: 23 FPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSES 82
Query: 57 NLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
L L+ I FVE L++ F NVCELDL+F+ K
Sbjct: 83 ELGILDLIQVFVETLDKCFENVCELDLIFHMDK 115
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDF 309
I + + L + + E + +Y+ AL +L +GR V AC+Y CR EG L +
Sbjct: 138 IDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEV 197
Query: 310 SELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQ 369
+E+ +I E+GRTY ++Q L + I DP Y+ R+++ L+ + EV A I+
Sbjct: 198 TEVARIDQKEIGRTYRYVAQELSLEIQPTDPKEYLPRFASDLEL---SEEVIAKAREIID 254
Query: 370 RMKKDMLHSGRRPNGL 385
+ L SG+ P+G
Sbjct: 255 TSAEQGLLSGKSPSGF 270
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 6/89 (6%)
Query: 4 DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIVYRRYAGLYFCICVDVNDNNL 58
D+ +QKLI +++A V+ R NF+E N +I+YR+YA LYF VD ++ L
Sbjct: 24 DESIQQKLIGDIYAAVSTRPPTACNFLE-SNLIAGKNRIIYRQYATLYFVFVVDEGESEL 82
Query: 59 CYLEAIHNFVEVLNEYFHNVCELDLVFNF 87
L+ I FVE L+ F+NVCELDLVF F
Sbjct: 83 GILDLIQVFVEALDRCFNNVCELDLVFKF 111
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 94 KIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVD 153
+I+YR+YA LYF VD ++ L L+ I FVE L+ F+NVCELDLVF F +++ ++
Sbjct: 60 RIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILA 119
Query: 154 EMFLAGEIRETSQTKVL 170
E+ G + ET+ +++
Sbjct: 120 EVVSGGLVLETNLNEIV 136
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)
Query: 238 SREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTC 297
S E L ++ + +QL + + C++ + +YK L L KGR + AAC++M C
Sbjct: 142 SYERNLVQATHELNRIAHQLGVPKSCMDEALAVYKQVLKSGLVKGRSVEAIIAACLHMAC 201
Query: 298 RLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKT 357
R++G L + S+ + E+ R + +++ L I +P DP YV + +L
Sbjct: 202 RMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIRLPLSDPRQYVPKIVEQLKLPG-- 259
Query: 358 HEVTMTALRILQRMKKDMLHSGRRPNGL 385
++ A+R+L+ K L +G+ P GL
Sbjct: 260 -DIAKEAIRVLEEAKDKGLTAGKDPAGL 286
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 234 LNRESR-EITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAAC 292
+ RE R + L + ++ + + QL+L + + + + A + LT G+ + AA
Sbjct: 231 IARELRIRLPLSDPRQYVPKIVEQLKLPGDIAKEAIRVLEEAKDKGLTAGKDPAGLAAAA 290
Query: 293 VYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIP 336
VY+ L+G + ++ Q+ + Y L++ L I IP
Sbjct: 291 VYIASLLKGEVRTQKEIAQAAQVTEVTVRNRYKELAKELNIKIP 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,933,376
Number of Sequences: 539616
Number of extensions: 11031772
Number of successful extensions: 44380
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 428
Number of HSP's that attempted gapping in prelim test: 42694
Number of HSP's gapped (non-prelim): 1482
length of query: 661
length of database: 191,569,459
effective HSP length: 124
effective length of query: 537
effective length of database: 124,657,075
effective search space: 66940849275
effective search space used: 66940849275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)