Query psy1861
Match_columns 661
No_of_seqs 425 out of 1363
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:11:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 4.9E-44 1.7E-48 382.2 9.7 238 174-419 42-324 (345)
2 3k7a_M Transcription initiatio 100.0 1.5E-41 5.3E-46 363.0 5.0 235 174-416 42-321 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 1.9E-35 6.6E-40 291.6 19.1 178 236-416 2-194 (200)
4 1c9b_A General transcription f 100.0 2.5E-31 8.4E-36 263.8 19.0 178 239-419 1-191 (207)
5 3tjz_C Coatomer subunit zeta-1 99.9 3.4E-27 1.2E-31 225.2 9.8 112 3-175 36-148 (153)
6 2vgl_S AP-2 complex subunit si 99.9 4.5E-26 1.6E-30 214.5 11.9 118 2-177 22-139 (142)
7 1w63_Q Adapter-related protein 99.9 3.8E-26 1.3E-30 218.9 10.9 117 2-176 22-138 (158)
8 1zp2_A RNA polymerase II holoe 99.8 2E-18 6.9E-23 174.4 16.6 144 243-389 28-180 (235)
9 2vgl_M AP-2 complex subunit MU 99.7 1.6E-18 5.4E-23 190.4 9.2 99 12-168 29-128 (435)
10 1w63_M Adaptor-related protein 99.7 1E-18 3.4E-23 191.3 3.4 104 11-172 29-134 (423)
11 2i53_A Cyclin K; cell cycle, t 99.6 2.2E-15 7.4E-20 153.7 15.0 146 244-389 42-201 (258)
12 2ivx_A Cyclin-T2; transcriptio 99.6 1.5E-14 5.2E-19 147.6 16.8 143 244-389 32-193 (257)
13 2b9r_A Human cyclin B1; cell c 99.6 2.2E-14 7.4E-19 147.9 18.1 170 244-416 39-224 (269)
14 3rgf_B Cyclin-C; protein kinas 99.6 1.8E-14 6.1E-19 149.9 16.3 148 239-389 38-203 (285)
15 1ngm_B Transcription factor II 99.6 5.5E-16 1.9E-20 128.5 2.4 51 455-505 19-69 (72)
16 2cch_B Cyclin A2, cyclin-A; co 99.5 7.3E-14 2.5E-18 143.2 16.9 172 243-416 39-227 (260)
17 2w96_A G1/S-specific cyclin-D1 99.5 1E-13 3.5E-18 142.9 16.5 177 244-420 58-260 (271)
18 1ais_B TFB TFIIB, protein (tra 99.5 9.4E-14 3.2E-18 136.5 14.7 191 114-337 8-199 (200)
19 1jkw_A Cyclin H; cell cycle, c 99.5 1E-13 3.6E-18 146.7 14.8 150 239-389 52-216 (323)
20 2pk2_A Cyclin-T1, protein TAT; 99.5 7.9E-14 2.7E-18 149.7 12.2 143 244-389 39-200 (358)
21 1g3n_C V-cyclin; cyclin-depend 99.4 2.7E-12 9.1E-17 131.3 18.3 172 244-415 52-246 (257)
22 2f2c_A Cyclin homolog, V-cycli 99.4 2.9E-12 9.9E-17 130.8 17.6 172 244-415 53-246 (254)
23 1w98_B Cyclin E, G1/S-specific 99.4 2.7E-12 9.4E-17 133.3 17.0 172 244-415 51-240 (283)
24 3g33_B CCND3 protein; Ser/Thr 99.2 2.7E-10 9.2E-15 119.7 18.9 178 242-419 70-269 (306)
25 1c9b_A General transcription f 99.2 3E-11 1E-15 119.3 11.0 186 116-336 6-192 (207)
26 4bbr_M Transcription initiatio 99.1 5.6E-12 1.9E-16 134.7 -2.9 203 114-347 125-332 (345)
27 3k7a_M Transcription initiatio 98.8 2.8E-10 9.5E-15 121.5 -0.5 189 114-332 125-321 (345)
28 1f5q_B Gamma herpesvirus cycli 98.7 2.1E-07 7.1E-12 95.3 13.9 145 245-389 51-199 (252)
29 3tjz_C Coatomer subunit zeta-1 97.3 2.6E-05 8.9E-10 74.1 -1.4 35 56-90 86-121 (153)
30 1zp2_A RNA polymerase II holoe 97.1 0.00077 2.6E-08 67.5 7.1 189 117-333 30-220 (235)
31 2cch_B Cyclin A2, cyclin-A; co 97.1 0.0012 4E-08 67.2 8.5 87 246-332 139-227 (260)
32 2b9r_A Human cyclin B1; cell c 97.0 0.00067 2.3E-08 69.5 6.5 87 246-332 138-224 (269)
33 1w63_Q Adapter-related protein 97.0 5.6E-05 1.9E-09 72.0 -1.7 34 56-89 76-109 (158)
34 2w96_A G1/S-specific cyclin-D1 96.9 0.0024 8.2E-08 65.3 9.4 90 246-335 157-259 (271)
35 2vgl_S AP-2 complex subunit si 96.9 8.9E-05 3E-09 69.2 -1.2 34 56-89 76-109 (142)
36 2i53_A Cyclin K; cell cycle, t 96.7 0.0034 1.2E-07 63.4 8.8 88 246-333 151-251 (258)
37 3rgf_B Cyclin-C; protein kinas 96.7 0.0037 1.3E-07 64.6 8.3 85 246-332 157-241 (285)
38 2ivx_A Cyclin-T2; transcriptio 96.6 0.0065 2.2E-07 61.4 9.5 87 246-332 146-239 (257)
39 2f2c_A Cyclin homolog, V-cycli 96.4 0.0084 2.9E-07 60.7 8.8 87 246-332 152-247 (254)
40 1g3n_C V-cyclin; cyclin-depend 96.2 0.0096 3.3E-07 60.4 8.2 87 246-332 151-247 (257)
41 1w63_M Adaptor-related protein 95.9 0.0012 4.1E-08 72.0 -0.1 32 58-89 78-109 (423)
42 3m03_A ORC6, origin recognitio 95.8 0.031 1.1E-06 48.9 8.1 80 250-331 6-91 (95)
43 2vgl_M AP-2 complex subunit MU 95.4 0.0018 6.2E-08 70.8 -1.4 32 58-89 76-107 (435)
44 4ell_A Retinoblastoma-associat 95.2 0.03 1E-06 60.9 7.2 70 244-313 280-352 (411)
45 2r7g_A PP110, retinoblastoma-a 95.1 0.042 1.4E-06 58.5 8.1 73 241-313 213-288 (347)
46 3h4c_A Transcription factor TF 94.7 0.13 4.3E-06 50.8 9.6 86 247-333 16-104 (260)
47 3g33_B CCND3 protein; Ser/Thr 94.7 0.065 2.2E-06 55.9 8.3 88 246-333 171-267 (306)
48 2pk2_A Cyclin-T1, protein TAT; 94.7 0.018 6.3E-07 61.5 4.1 87 246-332 153-246 (358)
49 2qdj_A Retinoblastoma-associat 94.7 0.1 3.4E-06 54.7 9.5 77 248-325 4-85 (304)
50 4elj_A Retinoblastoma-associat 94.5 0.06 2.1E-06 61.6 7.7 71 243-313 524-597 (656)
51 1w98_B Cyclin E, G1/S-specific 92.2 0.33 1.1E-05 49.9 8.3 80 246-332 151-241 (283)
52 4elj_A Retinoblastoma-associat 89.5 1.3 4.5E-05 50.7 10.6 79 248-329 6-88 (656)
53 1jkw_A Cyclin H; cell cycle, c 88.9 1 3.5E-05 47.2 8.6 171 145-332 80-260 (323)
54 1dl6_A Transcription factor II 86.6 0.17 5.9E-06 40.2 0.7 22 175-201 31-52 (58)
55 3k1f_M Transcription initiatio 82.8 0.28 9.7E-06 47.3 0.4 37 174-215 42-83 (197)
56 2lnb_A Z-DNA-binding protein 1 76.5 2.8 9.7E-05 35.2 4.4 46 291-336 22-67 (80)
57 2pmi_B PHO85 cyclin PHO80, ami 73.5 56 0.0019 33.9 14.2 102 246-348 77-182 (293)
58 1f5q_B Gamma herpesvirus cycli 70.4 17 0.0006 36.5 9.6 84 246-332 149-241 (252)
59 1pft_A TFIIB, PFTFIIBN; N-term 67.8 1.1 3.7E-05 34.0 0.0 23 174-201 24-46 (50)
60 3lwf_A LIN1550 protein, putati 64.6 8.2 0.00028 36.3 5.4 48 283-330 24-71 (159)
61 3t8r_A Staphylococcus aureus C 58.1 9.6 0.00033 34.9 4.5 46 285-330 10-55 (143)
62 2y75_A HTH-type transcriptiona 57.6 14 0.00047 32.7 5.4 44 287-330 10-53 (129)
63 3lsg_A Two-component response 55.2 33 0.0011 28.7 7.2 40 288-327 4-43 (103)
64 1ylf_A RRF2 family protein; st 51.9 14 0.0005 33.7 4.7 45 284-329 12-56 (149)
65 2k9s_A Arabinose operon regula 51.9 31 0.001 29.2 6.5 40 288-327 5-44 (107)
66 3oou_A LIN2118 protein; protei 51.2 32 0.0011 29.1 6.5 40 287-327 6-45 (108)
67 2heo_A Z-DNA binding protein 1 50.5 25 0.00084 27.9 5.2 32 299-330 21-52 (67)
68 3oou_A LIN2118 protein; protei 50.4 42 0.0014 28.4 7.2 81 250-346 24-106 (108)
69 1x3u_A Transcriptional regulat 48.0 55 0.0019 25.7 7.1 47 303-354 31-77 (79)
70 3mn2_A Probable ARAC family tr 45.3 45 0.0015 28.1 6.5 39 288-327 4-42 (108)
71 3e6c_C CPRK, cyclic nucleotide 42.3 58 0.002 31.2 7.6 48 283-330 147-204 (250)
72 1ug2_A 2610100B20RIK gene prod 41.2 49 0.0017 28.6 5.8 42 292-333 43-86 (95)
73 1j1v_A Chromosomal replication 40.5 33 0.0011 29.3 4.8 51 281-333 24-77 (94)
74 2jt1_A PEFI protein; solution 40.0 42 0.0014 27.7 5.2 31 301-331 22-52 (77)
75 3lsg_A Two-component response 39.8 84 0.0029 26.1 7.3 72 249-328 21-94 (103)
76 2jpc_A SSRB; DNA binding prote 38.7 28 0.00097 26.1 3.7 30 304-333 14-43 (61)
77 1tty_A Sigma-A, RNA polymerase 37.0 40 0.0014 27.7 4.7 33 302-334 37-69 (87)
78 3mkl_A HTH-type transcriptiona 36.3 2E+02 0.0069 24.5 9.8 86 249-352 25-113 (120)
79 3k69_A Putative transcription 36.3 27 0.00091 32.7 3.8 44 286-330 12-55 (162)
80 4ffb_C Protein STU2; tubulin f 36.3 3.1E+02 0.011 26.7 12.7 137 237-373 66-212 (278)
81 1xd7_A YWNA; structural genomi 35.5 38 0.0013 30.7 4.7 45 283-330 6-50 (145)
82 1u8b_A ADA polyprotein; protei 35.4 37 0.0013 29.9 4.5 38 301-346 91-128 (133)
83 3ulq_B Transcriptional regulat 35.0 45 0.0015 27.9 4.7 30 304-333 45-74 (90)
84 3mn2_A Probable ARAC family tr 34.9 2E+02 0.0067 24.0 9.3 81 250-346 21-105 (108)
85 2p7v_B Sigma-70, RNA polymeras 34.9 43 0.0015 26.0 4.3 32 302-333 24-55 (68)
86 3oio_A Transcriptional regulat 34.8 60 0.002 27.6 5.7 40 287-327 8-47 (113)
87 1fse_A GERE; helix-turn-helix 34.7 66 0.0023 24.7 5.5 30 304-333 27-56 (74)
88 3la7_A Global nitrogen regulat 34.4 64 0.0022 30.8 6.4 29 302-330 192-220 (243)
89 3b02_A Transcriptional regulat 33.8 48 0.0016 30.4 5.2 30 302-331 138-167 (195)
90 2fmy_A COOA, carbon monoxide o 33.0 63 0.0022 30.1 6.0 29 302-330 166-194 (220)
91 1zyb_A Transcription regulator 32.1 76 0.0026 30.0 6.5 48 283-330 162-213 (232)
92 3dv8_A Transcriptional regulat 32.0 82 0.0028 29.1 6.6 47 284-330 147-196 (220)
93 2w48_A Sorbitol operon regulat 31.4 75 0.0026 32.4 6.7 31 300-330 18-48 (315)
94 1bl0_A Protein (multiple antib 30.9 77 0.0026 27.7 5.8 42 285-327 10-51 (129)
95 1uxc_A FRUR (1-57), fructose r 30.7 81 0.0028 24.9 5.3 44 305-356 2-50 (65)
96 2nnn_A Probable transcriptiona 30.4 1.5E+02 0.0052 25.2 7.7 29 303-331 52-80 (140)
97 2gau_A Transcriptional regulat 29.9 1.1E+02 0.0037 28.7 7.1 29 302-330 179-207 (232)
98 3pvv_A Chromosomal replication 29.6 63 0.0021 28.0 4.8 52 280-333 27-80 (101)
99 1je8_A Nitrate/nitrite respons 29.3 86 0.0029 25.4 5.4 30 304-333 37-66 (82)
100 3oio_A Transcriptional regulat 29.3 94 0.0032 26.3 6.0 81 250-346 26-108 (113)
101 3bro_A Transcriptional regulat 28.6 91 0.0031 26.8 5.9 39 292-330 39-77 (141)
102 3r0a_A Putative transcriptiona 28.3 74 0.0025 27.9 5.2 38 293-330 31-69 (123)
103 1ku3_A Sigma factor SIGA; heli 28.1 68 0.0023 25.1 4.5 31 302-332 29-59 (73)
104 1qgp_A Protein (double strande 27.7 84 0.0029 25.6 5.1 31 301-331 29-59 (77)
105 2l8n_A Transcriptional repress 27.6 29 0.001 27.7 2.2 48 301-356 7-56 (67)
106 1qbj_A Protein (double-strande 27.1 67 0.0023 26.7 4.4 30 302-331 26-55 (81)
107 2oz6_A Virulence factor regula 27.0 51 0.0018 30.2 4.1 29 302-330 163-191 (207)
108 3c57_A Two component transcrip 26.9 66 0.0023 26.9 4.4 31 304-334 43-73 (95)
109 1u78_A TC3 transposase, transp 26.3 91 0.0031 27.0 5.5 72 249-326 24-102 (141)
110 2o8x_A Probable RNA polymerase 26.2 72 0.0025 24.2 4.2 30 304-333 32-61 (70)
111 3ryp_A Catabolite gene activat 26.0 85 0.0029 28.7 5.5 29 302-330 166-194 (210)
112 2fjr_A Repressor protein CI; g 25.6 77 0.0026 29.3 5.1 41 305-355 22-62 (189)
113 1p4w_A RCSB; solution structur 25.5 72 0.0025 27.2 4.5 30 304-333 50-79 (99)
114 2lr8_A CAsp8-associated protei 31.4 15 0.0005 30.2 0.0 41 292-332 24-65 (70)
115 3fx3_A Cyclic nucleotide-bindi 25.4 66 0.0023 30.3 4.7 30 301-330 176-205 (237)
116 2d1h_A ST1889, 109AA long hypo 25.2 98 0.0034 25.2 5.2 30 301-330 34-63 (109)
117 2k9s_A Arabinose operon regula 24.9 3E+02 0.01 22.8 9.1 79 250-344 23-103 (107)
118 3mkl_A HTH-type transcriptiona 24.7 66 0.0023 27.7 4.2 49 287-345 8-56 (120)
119 3e97_A Transcriptional regulat 24.6 1.2E+02 0.0041 28.3 6.3 29 302-330 174-202 (231)
120 2zcw_A TTHA1359, transcription 24.6 60 0.002 29.9 4.1 29 302-330 145-173 (202)
121 3hug_A RNA polymerase sigma fa 24.6 73 0.0025 26.2 4.2 29 304-332 54-82 (92)
122 1jhg_A Trp operon repressor; c 24.4 69 0.0024 28.0 4.1 30 301-331 56-85 (101)
123 2rnj_A Response regulator prot 23.9 60 0.0021 26.7 3.6 30 304-333 45-74 (91)
124 2htj_A P fimbrial regulatory p 23.8 1.2E+02 0.0042 24.2 5.4 29 302-330 13-41 (81)
125 3dkw_A DNR protein; CRP-FNR, H 23.7 77 0.0026 29.5 4.7 30 301-330 176-205 (227)
126 3nrv_A Putative transcriptiona 23.6 1.8E+02 0.0063 25.1 7.0 28 303-330 54-81 (148)
127 3d0s_A Transcriptional regulat 23.0 1.5E+02 0.0051 27.6 6.6 29 302-330 176-204 (227)
128 3bd1_A CRO protein; transcript 22.8 1.5E+02 0.0051 23.2 5.7 40 305-354 13-54 (79)
129 1bl0_A Protein (multiple antib 22.6 3.4E+02 0.012 23.4 8.5 71 250-328 30-102 (129)
130 2xi8_A Putative transcription 21.7 1.6E+02 0.0055 21.5 5.4 44 303-355 14-57 (66)
131 3kz3_A Repressor protein CI; f 21.6 1.1E+02 0.0037 24.1 4.6 45 303-356 25-69 (80)
132 3eco_A MEPR; mutlidrug efflux 21.4 1.3E+02 0.0044 25.8 5.4 39 292-330 36-74 (139)
133 2pg4_A Uncharacterized protein 21.3 1E+02 0.0036 25.2 4.6 33 299-331 26-59 (95)
134 4ev0_A Transcription regulator 21.1 98 0.0034 28.4 4.9 30 302-331 162-191 (216)
135 2bgc_A PRFA; bacterial infecti 21.0 1.2E+02 0.0042 28.7 5.6 28 303-330 169-197 (238)
136 3kcc_A Catabolite gene activat 20.5 1.4E+02 0.0047 28.9 6.0 29 302-330 216-244 (260)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=4.9e-44 Score=382.24 Aligned_cols=238 Identities=16% Similarity=0.222 Sum_probs=127.0
Q ss_pred hhhhhccCCCCcceeeeccccccccce---eecC--CCCcccccccc----ccCCCCCCcCCC--------C---ccCCC
Q psy1861 174 RVLRSRCGPSPWRHILEDSVIVSEMQF---EENA--HGGTSALGHFV----SSDSKGGCQGFG--------G---ALRGG 233 (661)
Q Consensus 174 ~~lcs~CG~~~~g~VLeE~~Ivse~tF---~e~~--~G~~~~~G~fv----~~~~~~~~~~~g--------~---~~~~~ 233 (661)
..+|..|| .||+|++||.+++| .++. +.+++++|... .+.+.+...+++ . +||.+
T Consensus 42 ~~vC~~CG-----lVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~~~~~~~~~L~r~q~r 116 (345)
T 4bbr_M 42 DVVCALCG-----LVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGK 116 (345)
T ss_dssp EEEETTTC-----BEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred cEEeCCCC-----CCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCCcchhhHHHHHHHHHh
Confidence 36677777 89999999988854 4332 44667777543 222222111111 0 23444
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHh
Q psy1861 234 LNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELL 313 (661)
Q Consensus 234 ~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~ 313 (661)
+.++++|++|..|++.|+++|++|+||++|+++|+.||++++++++++||+.++++|||||+|||++++||||+||++++
T Consensus 117 ~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~ 196 (345)
T 4bbr_M 117 NVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196 (345)
T ss_dssp TCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccc------------CCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCC
Q psy1861 314 QICIFELGRTYLRLSQALCIS------------IPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRR 381 (661)
Q Consensus 314 ~Vsv~~Lgrtyk~L~k~L~i~------------~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRr 381 (661)
+|++++||++|+.|.+.|++. +|+++|++||+|||++|+|++ +|.+.|++|+++|.++|+++||+
T Consensus 197 ~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~---~v~~~A~~i~~~~~~~~i~~GR~ 273 (345)
T 4bbr_M 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM---QVTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp TCCTTHHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHhcccccCCC
Confidence 999999999999999999974 788999999999999999987 58999999999999999999999
Q ss_pred ccceeecc---------cccCHHHHHHHHh----hhhhhhhcchHHHHHhh
Q psy1861 382 PNGLIGKY---------SCDSHVDISRVAG----DDYIKSNELPRVIKECL 419 (661)
Q Consensus 382 P~gIAaAA---------~~rT~~eIa~~ag----tiR~~ykeL~~~~~~~l 419 (661)
|.|||||| +++||+||++++| |||++|+||.+.+++-+
T Consensus 274 P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 274 PITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999 7899999999998 89999999988876544
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=362.97 Aligned_cols=235 Identities=16% Similarity=0.230 Sum_probs=120.8
Q ss_pred hhhhhccCCCCcceeeecccccccc---ceeec--CCCCcccccccccc----CCCCCCcCCC-----------CccCCC
Q psy1861 174 RVLRSRCGPSPWRHILEDSVIVSEM---QFEEN--AHGGTSALGHFVSS----DSKGGCQGFG-----------GALRGG 233 (661)
Q Consensus 174 ~~lcs~CG~~~~g~VLeE~~Ivse~---tF~e~--~~G~~~~~G~fv~~----~~~~~~~~~g-----------~~~~~~ 233 (661)
..+|+.|| +|++|++||.++ +|.++ ++++++++|.+++. .+.+...+++ ++|+.+
T Consensus 42 ~~vC~~CG-----~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~~~~~~~~r~l~~~~~~ 116 (345)
T 3k7a_M 42 DVVCALCG-----LVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGK 116 (345)
T ss_dssp SCCCSSSC-----CCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTTSCCHHHHHHHHHHHHH
T ss_pred CEecCCCC-----eEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCCCCCchhhhhhhhhccc
Confidence 35677777 899999999877 45543 24467788876542 1111111111 123333
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHh
Q psy1861 234 LNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELL 313 (661)
Q Consensus 234 ~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~ 313 (661)
+.++++|++|.+|+..|+++|++|+||++++++|+.||+++++.++++||+.+.++|||||+|||++++|+||+||++++
T Consensus 117 ~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~ 196 (345)
T 3k7a_M 117 NVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI 196 (345)
T ss_dssp HTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhc------------ccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCC
Q psy1861 314 QICIFELGRTYLRLSQALC------------ISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRR 381 (661)
Q Consensus 314 ~Vsv~~Lgrtyk~L~k~L~------------i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRr 381 (661)
++++++|+++|+.|.+.|+ +.+|+++|..||+|||+.|+|+. +|...|++|++.+.++|++.||+
T Consensus 197 ~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~---~v~~~A~~i~~~~~~~~l~~Gr~ 273 (345)
T 3k7a_M 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM---QVTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp SCCSHHHHHHHHHHHHHHTCC-----------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHhchhcCCC
Confidence 9999999999999999999 77889999999999999999986 58999999999999999999999
Q ss_pred ccceeecc---------cccCHHHHHHHHh----hhhhhhhcchHHHH
Q psy1861 382 PNGLIGKY---------SCDSHVDISRVAG----DDYIKSNELPRVIK 416 (661)
Q Consensus 382 P~gIAaAA---------~~rT~~eIa~~ag----tiR~~ykeL~~~~~ 416 (661)
|.+||||| +++|+++|++++| |||++|++|.+...
T Consensus 274 P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 274 PITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999 6789999999998 89999999988764
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=1.9e-35 Score=291.58 Aligned_cols=178 Identities=27% Similarity=0.440 Sum_probs=167.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCC
Q psy1861 236 RESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQI 315 (661)
Q Consensus 236 ~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~V 315 (661)
++++|++|.+|++.|.++|++|+||+.++++|..+|++++++++++||++..++|||||+|||++++|+|++||++++++
T Consensus 2 ~~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v 81 (200)
T 1ais_B 2 SDAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV 81 (200)
T ss_dssp ------CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCCC--CChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCCccceeecc----
Q psy1861 316 CIFELGRTYLRLSQALCISIPS--MDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKY---- 389 (661)
Q Consensus 316 sv~~Lgrtyk~L~k~L~i~~p~--~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA---- 389 (661)
++++|+++|+.|.+.|++++|+ ++|..||+|||+.|++++ ++...|++|++.+.++|++.||+|.+|||||
T Consensus 82 ~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~---~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A 158 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE---KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA 158 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH---HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999986 5899999999999999999999999999999
Q ss_pred -----cccCHHHHHHHHh----hhhhhhhcchHHHH
Q psy1861 390 -----SCDSHVDISRVAG----DDYIKSNELPRVIK 416 (661)
Q Consensus 390 -----~~rT~~eIa~~ag----tiR~~ykeL~~~~~ 416 (661)
.++|++||++++| |+|++|++|.+.+.
T Consensus 159 ~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 159 SLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 6899999999998 89999999998875
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=2.5e-31 Score=263.77 Aligned_cols=178 Identities=20% Similarity=0.345 Sum_probs=170.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHH
Q psy1861 239 REITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIF 318 (661)
Q Consensus 239 rEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~ 318 (661)
+||+|.+|++.|+++|.+|+||+.++++|..+|++++.++.++|+++..++|||||+|||.+++|++++||+.+++++++
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 80 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCCccceeecc---------
Q psy1861 319 ELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKY--------- 389 (661)
Q Consensus 319 ~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA--------- 389 (661)
+|+++|+.|.+.|+.+++..+|..||.|||+.|++++ ++...|..+++.+.++|+..||+|.+|||||
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~---~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~ 157 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK---QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA 157 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999976 5889999999999999999999999999999
Q ss_pred cccCHHHHHHHHh----hhhhhhhcchHHHHHhh
Q psy1861 390 SCDSHVDISRVAG----DDYIKSNELPRVIKECL 419 (661)
Q Consensus 390 ~~rT~~eIa~~ag----tiR~~ykeL~~~~~~~l 419 (661)
.++|+++|++.+| |+|++|++|.+.+...+
T Consensus 158 ~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~ 191 (207)
T 1c9b_A 158 EKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF 191 (207)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHS
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhC
Confidence 6799999999998 79999999998876544
No 5
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.94 E-value=3.4e-27 Score=225.23 Aligned_cols=112 Identities=19% Similarity=0.341 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCcccceecCeEEEeeecceEEEEEEEcCCCchhhHHhhhhhheeecccccccccccc
Q psy1861 3 FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELD 82 (661)
Q Consensus 3 ~~~~~~~~l~~ei~~~~~~R~~~~cnf~e~~~~kivyrryAsL~f~~~vd~~enel~~l~~i~~~ve~ld~~f~~vceld 82 (661)
.+.++|+++++++++++ +|++ |+|++++++++||||||+|||++++|.+
T Consensus 36 ~~~~~~~~~e~~i~~~~-~r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~---------------------------- 84 (153)
T 3tjz_C 36 PSVKEQKAFEKNIFNKT-HRTD--SEIALLEGLTVVYKSSIDLYFYVIGSSY---------------------------- 84 (153)
T ss_dssp CSHHHHHHHHHHHHHHH-SSCC--CCEEEETTEEEEEEECSSCEEEEEEETT----------------------------
T ss_pred CCHHHHHHHHHHHHHHH-hCCC--CCEEEECCEEEEEEEECCEEEEEEEcCC----------------------------
Confidence 36788999999999997 5654 8999999998888888888887777764
Q ss_pred cccccccccceeeeeeccccEEEEEeeeCCCchhHHHHHHHHHHHhhhhhh-cccceeeeeechHHHHHHhhHHhhcceE
Q psy1861 83 LVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKVYTVVDEMFLAGEI 161 (661)
Q Consensus 83 ~~~nf~k~~~~k~vyr~ya~l~f~~~~d~~enel~~l~~i~~~ve~ld~~f-~~vcEld~~f~~~k~~~ildE~i~~G~v 161 (661)
+|||++||+||.|||+||+|| +||||+||+|||+++|.+||||+.+|.+
T Consensus 85 ------------------------------eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~ 134 (153)
T 3tjz_C 85 ------------------------------ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVI 134 (153)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEE
T ss_pred ------------------------------CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 556688888888999999999 9999999999999999999999999999
Q ss_pred eecchHHHHHHHhh
Q psy1861 162 RETSQTKVLKELRV 175 (661)
Q Consensus 162 ~Ets~~~Il~~L~~ 175 (661)
+||+++.|++++..
T Consensus 135 ~eT~~~~I~~~v~~ 148 (153)
T 3tjz_C 135 LESDPQQVVHRVAL 148 (153)
T ss_dssp CCCCHHHHHHTC--
T ss_pred eeCCHHHHHHHHhc
Confidence 99999999988653
No 6
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.93 E-value=4.5e-26 Score=214.46 Aligned_cols=118 Identities=94% Similarity=1.444 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccceecCeEEEeeecceEEEEEEEcCCCchhhHHhhhhhheeeccccccccccc
Q psy1861 2 NFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCEL 81 (661)
Q Consensus 2 ~~~~~~~~~l~~ei~~~~~~R~~~~cnf~e~~~~kivyrryAsL~f~~~vd~~enel~~l~~i~~~ve~ld~~f~~vcel 81 (661)
+++.++++++++++++++++|++++|+|++++++++||+||++|||+++++.+
T Consensus 22 ~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~--------------------------- 74 (142)
T 2vgl_S 22 QFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVN--------------------------- 74 (142)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTT---------------------------
T ss_pred CCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCC---------------------------
Confidence 35688999999999999999988899999999999888888888888877764
Q ss_pred ccccccccccceeeeeeccccEEEEEeeeCCCchhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceE
Q psy1861 82 DLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 161 (661)
Q Consensus 82 d~~~nf~k~~~~k~vyr~ya~l~f~~~~d~~enel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v 161 (661)
+|||.+||+||.|||+||.|||||||+||++||+++|.+||||+.+|.+
T Consensus 75 -------------------------------~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~ 123 (142)
T 2vgl_S 75 -------------------------------DNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123 (142)
T ss_dssp -------------------------------SCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEE
T ss_pred -------------------------------CCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 5566888888889999999999999999999999999999999999999
Q ss_pred eecchHHHHHHHhhhh
Q psy1861 162 RETSQTKVLKELRVLR 177 (661)
Q Consensus 162 ~Ets~~~Il~~L~~lc 177 (661)
+||+..+|++++..++
T Consensus 124 ~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 124 RETSQTKVLKQLLMLQ 139 (142)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHhhh
Confidence 9999999999976554
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.93 E-value=3.8e-26 Score=218.93 Aligned_cols=117 Identities=44% Similarity=0.869 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccceecCeEEEeeecceEEEEEEEcCCCchhhHHhhhhhheeeccccccccccc
Q psy1861 2 NFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCEL 81 (661)
Q Consensus 2 ~~~~~~~~~l~~ei~~~~~~R~~~~cnf~e~~~~kivyrryAsL~f~~~vd~~enel~~l~~i~~~ve~ld~~f~~vcel 81 (661)
+.+.++|+++++++++++.+|++++|+|++++++++||+|||+|||+++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~--------------------------- 74 (158)
T 1w63_Q 22 ATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQ--------------------------- 74 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSS---------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCC---------------------------
Confidence 35788899999999999999998999999999999988888888888877764
Q ss_pred ccccccccccceeeeeeccccEEEEEeeeCCCchhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceE
Q psy1861 82 DLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 161 (661)
Q Consensus 82 d~~~nf~k~~~~k~vyr~ya~l~f~~~~d~~enel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v 161 (661)
+|||.+||+||.|||+||.|||||||+||++||+++|.+||||+.+|.+
T Consensus 75 -------------------------------~Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~ 123 (158)
T 1w63_Q 75 -------------------------------DNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDV 123 (158)
T ss_dssp -------------------------------SCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEE
T ss_pred -------------------------------CCHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEE
Confidence 5566888888889999999999999999999999999999999999999
Q ss_pred eecchHHHHHHHhhh
Q psy1861 162 RETSQTKVLKELRVL 176 (661)
Q Consensus 162 ~Ets~~~Il~~L~~l 176 (661)
+||+++.|.+.+...
T Consensus 124 ~eT~~~~l~~~I~~~ 138 (158)
T 1w63_Q 124 QDTSKKSVLKAIEQA 138 (158)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred EecCHHHHHHHHhcc
Confidence 999999988877643
No 8
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2e-18 Score=174.41 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHHhCCcccHHHHHHHh--------
Q psy1861 243 LDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKG-RRQILVCAACVYMTCRLEGTSHLLIDFSELL-------- 313 (661)
Q Consensus 243 L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rG-R~~~~VaAACLYiACR~~~~PrtLkDIsdv~-------- 313 (661)
...+.+.|.++|..|+||+.+..+|..+|++++..+.+++ +++..+++||||+|||.++.|++++||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 6678999999999999999999999999999999998888 9999999999999999999999999999986
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCCccceeecc
Q psy1861 314 QICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKY 389 (661)
Q Consensus 314 ~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA 389 (661)
..+.++|+++++.|.+.|+.++...+|..|+.||++.++++. ++...|..+++.+..+++..|++|++|||||
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~---~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAa 180 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ---KQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH---HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHcCCchhccCHHHHHHHH
Confidence 578999999999999999999999999999999999998764 6899999999999999999999999999999
No 9
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.74 E-value=1.6e-18 Score=190.39 Aligned_cols=99 Identities=15% Similarity=0.283 Sum_probs=85.1
Q ss_pred HHHHHHHHhc-CCCCCcccceecCeEEEeeecceEEEEEEEcCCCchhhHHhhhhhheeecccccccccccccccccccc
Q psy1861 12 IEEVHAVVTV-RDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKF 90 (661)
Q Consensus 12 ~~ei~~~~~~-R~~~~cnf~e~~~~kivyrryAsL~f~~~vd~~enel~~l~~i~~~ve~ld~~f~~vceld~~~nf~k~ 90 (661)
.....++++. |+..+|+|++++++++||++|++|||+++++.+
T Consensus 29 ~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~------------------------------------ 72 (435)
T 2vgl_M 29 VDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQN------------------------------------ 72 (435)
T ss_dssp HHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSC------------------------------------
T ss_pred HHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCC------------------------------------
Confidence 3445566665 445799999999998888888888888877764
Q ss_pred cceeeeeeccccEEEEEeeeCCCchhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEeecchHH
Q psy1861 91 RNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTK 168 (661)
Q Consensus 91 ~~~k~vyr~ya~l~f~~~~d~~enel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~Ets~~~ 168 (661)
+|||.+||+||.||++||.||++|||+||++||+++|.+||||+.+|.+++|+++.
T Consensus 73 ----------------------~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~ 128 (435)
T 2vgl_M 73 ----------------------VNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGA 128 (435)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHH
Confidence 55668888888899999999999999999999999999999999999999999983
No 10
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.72 E-value=1e-18 Score=191.33 Aligned_cols=104 Identities=16% Similarity=0.267 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCC--CCCcccceecCeEEEeeecceEEEEEEEcCCCchhhHHhhhhhheeecccccccccccccccccc
Q psy1861 11 LIEEVHAVVTVRD--AKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFY 88 (661)
Q Consensus 11 l~~ei~~~~~~R~--~~~cnf~e~~~~kivyrryAsL~f~~~vd~~enel~~l~~i~~~ve~ld~~f~~vceld~~~nf~ 88 (661)
+.+..++++++|. .++|+|++++++++||++|++|||+++++.+
T Consensus 29 ~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~---------------------------------- 74 (423)
T 1w63_M 29 EVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKN---------------------------------- 74 (423)
T ss_dssp THHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSC----------------------------------
T ss_pred HHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCC----------------------------------
Confidence 3456677777663 4789999999999888888888888877764
Q ss_pred cccceeeeeeccccEEEEEeeeCCCchhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEeecchHH
Q psy1861 89 KFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTK 168 (661)
Q Consensus 89 k~~~~k~vyr~ya~l~f~~~~d~~enel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~Ets~~~ 168 (661)
+|||.+||+||.||++||.||++|||+||++||+++|.+||||+.+|.+++|+++.
T Consensus 75 ------------------------~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~ 130 (423)
T 1w63_M 75 ------------------------ACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKI 130 (423)
T ss_dssp ------------------------CCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTT
T ss_pred ------------------------CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHH
Confidence 45668888888899999999999999999999999999999999999999999986
Q ss_pred HHHH
Q psy1861 169 VLKE 172 (661)
Q Consensus 169 Il~~ 172 (661)
|.+.
T Consensus 131 l~~~ 134 (423)
T 1w63_M 131 LQEF 134 (423)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 6543
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.63 E-value=2.2e-15 Score=153.71 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCC--------
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQI-------- 315 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~V-------- 315 (661)
..+.+.|.++|..|+||+.+..+|..+|++.+..+.+++++...+++||||+|||.++.|++++||..+++.
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999976431
Q ss_pred -----CHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcc-cHHHHHHHHHHHHHhhcccccCCCCccceeecc
Q psy1861 316 -----CIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAK-THEVTMTALRILQRMKKDMLHSGRRPNGLIGKY 389 (661)
Q Consensus 316 -----sv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~-~~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA 389 (661)
+..+|.+..+.|.+.|+.++....|..|+.+|++.|+.+.. .+++...|..+++.+..+++..+.+|+.||+||
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAa 201 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHH
Confidence 36799999999999999999999999999999999988652 236899999999999999999999999999999
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.59 E-value=1.5e-14 Score=147.60 Aligned_cols=143 Identities=10% Similarity=0.097 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhC---------
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQ--------- 314 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~--------- 314 (661)
..+.+.|.++|..|+||+.+..+|..+|++.+..+.+++++...+++||||+||+.+++|+++.||+.+++
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred --CC-------HHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhh-cccccCCCCccc
Q psy1861 315 --IC-------IFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMK-KDMLHSGRRPNG 384 (661)
Q Consensus 315 --Vs-------v~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~-~d~i~tGRrP~g 384 (661)
++ ..+|.+..+.|.+.|+.++...+|..|+.+|+..++.+. ++...|..+++... ...+..+.+|+.
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~---~~~~~A~~~~~~sl~~~~~~l~~~Ps~ 188 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK---DLAQTSYFMATNSLHLTTFCLQYKPTV 188 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHHCCGGGTSCHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc---HHHHHHHHHHHhhhhcccHHHcCCHHH
Confidence 22 678999999999999999999999999999999998764 58889999998765 466678999999
Q ss_pred eeecc
Q psy1861 385 LIGKY 389 (661)
Q Consensus 385 IAaAA 389 (661)
||+||
T Consensus 189 IAaAa 193 (257)
T 2ivx_A 189 IACVC 193 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99999
No 13
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.59 E-value=2.2e-14 Score=147.94 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC-cccHHHHHHHhC--CCHHHH
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGT-SHLLIDFSELLQ--ICIFEL 320 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~-PrtLkDIsdv~~--Vsv~~L 320 (661)
....+.|.+++..++|++.+.-.|..++++......+++++...+++||+|+|||.+.. |.++.||..+++ .+.++|
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHH
Confidence 44678999999999999999999999999999998899999999999999999999887 899999999885 799999
Q ss_pred HHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCCccceeecc---------cc
Q psy1861 321 GRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKY---------SC 391 (661)
Q Consensus 321 grtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA---------~~ 391 (661)
.+..+.|.+.|+.++...+|..|+.||++.++++. ++...|..+++....+....|.+|+.||||| .+
T Consensus 119 ~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~---~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 119 RQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV---EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH---HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998765 5778899999998888888999999999999 34
Q ss_pred cCHHHHHHHHh----hhhhhhhcchHHHH
Q psy1861 392 DSHVDISRVAG----DDYIKSNELPRVIK 416 (661)
Q Consensus 392 rT~~eIa~~ag----tiR~~ykeL~~~~~ 416 (661)
..+.+++..+| +++..+++|.+...
T Consensus 196 ~w~~~l~~~tg~~~~~l~~~~~~l~~~~~ 224 (269)
T 2b9r_A 196 EWTPTLQHYLSYTEESLLPVMQHLAKNVV 224 (269)
T ss_dssp CSCTTHHHHSCCCSSTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 56778888888 67887877766543
No 14
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=149.89 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=134.4
Q ss_pred hhHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcc-cHHHHHHHhC--
Q psy1861 239 REITL-DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSH-LLIDFSELLQ-- 314 (661)
Q Consensus 239 rEr~L-~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~Pr-tLkDIsdv~~-- 314 (661)
.++.+ ..+.+.|.++|..|+||+.+..+|..+|++.+..+.++++++..+++||||+||+.+.+|+ ++.||..++.
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~ 117 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 34444 4578999999999999999999999999999999999999999999999999999999997 7889877542
Q ss_pred --------------CCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCC
Q psy1861 315 --------------ICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGR 380 (661)
Q Consensus 315 --------------Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGR 380 (661)
....+|.+..+.|.+.|+.++....|..|+.+|+..|+++. ++...|..+++....+.+..+.
T Consensus 118 ~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~---~~~~~A~~~l~~sl~t~~~l~~ 194 (285)
T 3rgf_B 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQED---MLLPLAWRIVNDTYRTDLCLLY 194 (285)
T ss_dssp HHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHH---HHHHHHHHHHHHHTTSSHHHHS
T ss_pred HcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHccChhhcc
Confidence 46799999999999999999989999999999999999754 6899999999999888889999
Q ss_pred Cccceeecc
Q psy1861 381 RPNGLIGKY 389 (661)
Q Consensus 381 rP~gIAaAA 389 (661)
.|+.||+||
T Consensus 195 ~Ps~IAaAa 203 (285)
T 3rgf_B 195 PPFMIALAC 203 (285)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999999
No 15
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.56 E-value=5.5e-16 Score=128.50 Aligned_cols=51 Identities=35% Similarity=0.609 Sum_probs=46.4
Q ss_pred ccCCCCCCcCCCCChHHHHhhcCCHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy1861 455 QIVDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAERKA 505 (661)
Q Consensus 455 ~~~~~~~~~lsdiDD~Eid~yil~eeE~~~K~~lW~~~N~eyl~eq~~r~~ 505 (661)
.+.++++++|+|+||+|||+|||||+|+++|++||+.+|+|||++|++|++
T Consensus 19 ~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~ 69 (72)
T 1ngm_B 19 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRL 69 (72)
T ss_dssp TTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTT
T ss_pred HhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999998543
No 16
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.55 E-value=7.3e-14 Score=143.16 Aligned_cols=172 Identities=12% Similarity=0.032 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC-cccHHHHHHHhC--CCHHH
Q psy1861 243 LDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGT-SHLLIDFSELLQ--ICIFE 319 (661)
Q Consensus 243 L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~-PrtLkDIsdv~~--Vsv~~ 319 (661)
-..+.+.|.+++..++|++.+.-.|..++.+.....-+..++...+++||+|+|||.+++ |.++.||..+++ .+.++
T Consensus 39 R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 345679999999999999999999999999999988788888999999999999999998 999999999874 88999
Q ss_pred HHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccc-cCCCCccceeecc---------
Q psy1861 320 LGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDML-HSGRRPNGLIGKY--------- 389 (661)
Q Consensus 320 Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i-~tGRrP~gIAaAA--------- 389 (661)
|.+..+.|.+.|+.++....|..|+.+|++.++++. ..+...|..+++....+.- ..|.+|+.|||||
T Consensus 119 i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~--~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~ 196 (260)
T 2cch_B 119 VLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN--CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT 196 (260)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC--HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999865 2578899999988655554 7899999999999
Q ss_pred cccCHHHHHHHHh----hhhhhhhcchHHHH
Q psy1861 390 SCDSHVDISRVAG----DDYIKSNELPRVIK 416 (661)
Q Consensus 390 ~~rT~~eIa~~ag----tiR~~ykeL~~~~~ 416 (661)
.+..+.+++..+| +++..+++|.+...
T Consensus 197 ~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~ 227 (260)
T 2cch_B 197 GQSWPESLIRKTGYTLESLKPCLMDLHQTYL 227 (260)
T ss_dssp SCCSCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 3456788888888 68888888777654
No 17
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.53 E-value=1e-13 Score=142.87 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC-cccHHHHHHHhC--CCHHHH
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGT-SHLLIDFSELLQ--ICIFEL 320 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~-PrtLkDIsdv~~--Vsv~~L 320 (661)
....+.|.+++..+++++.+.-.|..++.+.....-+..++...+++||+|+|||.+++ |+++.||+.+++ .+.++|
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 45678899999999999999999999999999988888899999999999999999998 999999999864 789999
Q ss_pred HHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccH-HHHHHHHHHHHHhhcccccCCCCccceeecc-------cc-
Q psy1861 321 GRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTH-EVTMTALRILQRMKKDMLHSGRRPNGLIGKY-------SC- 391 (661)
Q Consensus 321 grtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~-~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA-------~~- 391 (661)
.+..+.|.+.|+.++....|..|+.+|++.++++.+.. .+...|..+++....+....|.+|+.||||| .+
T Consensus 138 ~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~ 217 (271)
T 2w96_A 138 LQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNL 217 (271)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999876432 2345677888776666666789999999999 11
Q ss_pred ----------cCHHHHHHHHh----hhhhhhhcchHHHHHhhh
Q psy1861 392 ----------DSHVDISRVAG----DDYIKSNELPRVIKECLE 420 (661)
Q Consensus 392 ----------rT~~eIa~~ag----tiR~~ykeL~~~~~~~l~ 420 (661)
.++.++++.+| ++|..+++|.+.+...+.
T Consensus 218 ~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 218 RSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 13678888888 688888888877665443
No 18
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.52 E-value=9.4e-14 Score=136.53 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=144.7
Q ss_pred chhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEeecchHHHHHH-HhhhhhccCCCCcceeeecc
Q psy1861 114 NNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKE-LRVLRSRCGPSPWRHILEDS 192 (661)
Q Consensus 114 nel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~Ets~~~Il~~-L~~lcs~CG~~~~g~VLeE~ 192 (661)
|-...+++|+.+...|.-= .+| .+.+..+++.+...|.+.+.+...|..+ +...|+.+| +|.-+.|-
T Consensus 8 ~l~~a~~~I~~~~~~L~L~-~~v--------~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~---~p~~l~di 75 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLP-RHV--------EEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK---VPRTLDEI 75 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCC-HHH--------HHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT---CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHH--------HHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 4457788888888887532 233 5778889999999999999999988876 789999999 46666664
Q ss_pred ccccccceeecCCCCccccccccccCCCCCCcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy1861 193 VIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYK 272 (661)
Q Consensus 193 ~Ivse~tF~e~~~G~~~~~G~fv~~~~~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk 272 (661)
.-+++++-. ..|.....- ...++ +... . ...+....|.++|+.|+||+.+.+.|..+++
T Consensus 76 ~~~~~v~~~--------~i~~~~~~l----~~~L~--~~~~--~-----~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~ 134 (200)
T 1ais_B 76 ADIARVDKK--------EIGRSYRFI----ARNLN--LTPK--K-----LFVKPTDYVNKFADELGLSEKVRRRAIEILD 134 (200)
T ss_dssp HHHTTSCHH--------HHHHHHHHH----HHHTT--CCTT--T-----TCCCGGGGHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHCCCHH--------HHHHHHHHH----HHHhc--ccCC--c-----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 433332100 011100000 00000 1000 0 0012458899999999999999999999999
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCC
Q psy1861 273 MALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPS 337 (661)
Q Consensus 273 ~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~ 337 (661)
.+.+.++..||++..++|||||+|||.+|.|+|++||+.+++|+..+|+++|+.|.+.|++++|+
T Consensus 135 ~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~~~~~~ 199 (200)
T 1ais_B 135 EAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIKVPI 199 (200)
T ss_dssp HHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987765
No 19
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.51 E-value=1e-13 Score=146.72 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=134.2
Q ss_pred hhHHHH-HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCC
Q psy1861 239 REITLD-NCKRNISSLCNQLR--LNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQI 315 (661)
Q Consensus 239 rEr~L~-~a~~~I~~i~~~L~--Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~V 315 (661)
.|+.+. .+...|.++|..|+ ||+.+..+|..||++.+..+.+++..+..|++||||+||+.+++|+++.||+..+..
T Consensus 52 eE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~ 131 (323)
T 1jkw_A 52 EEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcc
Confidence 455554 56799999999999 999999999999999999999999999999999999999999999999999887765
Q ss_pred C-------HHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhc-----CCCcccHHHHHHHHHHHHHhhcccccCCCCcc
Q psy1861 316 C-------IFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRL-----DFGAKTHEVTMTALRILQRMKKDMLHSGRRPN 383 (661)
Q Consensus 316 s-------v~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L-----~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRrP~ 383 (661)
+ ..+|.+..+.|.+.|+.++....|..|+.+|+..| +++. ...+...|..+++.+..+.+..+..|+
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~-~~~l~~~A~~~l~~sl~t~~~l~~~Ps 210 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN-PEILRKTADDFLNRIALTDAYLLYTPS 210 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHHHHHTTSTHHHHSCHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhccHHHcCCHH
Confidence 5 57899999999999999999999999999999876 3443 246889999999998888888899999
Q ss_pred ceeecc
Q psy1861 384 GLIGKY 389 (661)
Q Consensus 384 gIAaAA 389 (661)
.||+||
T Consensus 211 ~IAaAa 216 (323)
T 1jkw_A 211 QIALTA 216 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 20
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.49 E-value=7.9e-14 Score=149.66 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhC---------
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQ--------- 314 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~--------- 314 (661)
..+.+.|.+++..|+||+.+..+|..||++++..+.+++++...|++||||+||+.+.+|++++||..++.
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999986642
Q ss_pred --C-------CHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhh-cccccCCCCccc
Q psy1861 315 --I-------CIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMK-KDMLHSGRRPNG 384 (661)
Q Consensus 315 --V-------sv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~-~d~i~tGRrP~g 384 (661)
+ ...+|.+..+.|.+.|+.++...+|..||.+|+..|+.+. ++...|+.+++... ...+..+..|+.
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~---~l~~~A~~ll~~sl~~t~l~l~y~Ps~ 195 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK---DLAQTSYFMATNSLHLTTFSLQYTPPV 195 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH---HHHHHHHHHHHHHTTTSCGGGTSCHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHhcCcchhccCHHH
Confidence 1 2567899999999999999999999999999999998754 58899999998765 355578899999
Q ss_pred eeecc
Q psy1861 385 LIGKY 389 (661)
Q Consensus 385 IAaAA 389 (661)
||+||
T Consensus 196 IAaAA 200 (358)
T 2pk2_A 196 VACVC 200 (358)
T ss_dssp HTTTT
T ss_pred HHHHH
Confidence 99999
No 21
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.44 E-value=2.7e-12 Score=131.31 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC-cccHHHHHHHhC--CCHHHH
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGT-SHLLIDFSELLQ--ICIFEL 320 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~-PrtLkDIsdv~~--Vsv~~L 320 (661)
....+.|.+++..+++++.+.-.|..++.+....+.+++++...+++||+|+||+.+.. |.++.||+.+++ .+..+|
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 34678999999999999999999999999999999899999999999999999998875 999999999865 789999
Q ss_pred HHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCccc-HHHHHHHHHHHHHhhcccccCCCCccceeecc-------cc-
Q psy1861 321 GRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKT-HEVTMTALRILQRMKKDMLHSGRRPNGLIGKY-------SC- 391 (661)
Q Consensus 321 grtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~-~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA-------~~- 391 (661)
.+..+.|.+.|+.++..+.|..|+.+|++.++++.+. ..+...|..+++....+....+.+|+.||||| .+
T Consensus 132 ~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 132 IDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999987653 23456688888877777778899999999999 22
Q ss_pred -------cCHHHHHHHHh----hhhhhhhcchHHH
Q psy1861 392 -------DSHVDISRVAG----DDYIKSNELPRVI 415 (661)
Q Consensus 392 -------rT~~eIa~~ag----tiR~~ykeL~~~~ 415 (661)
.....+++.+| +++..++++.+-+
T Consensus 212 ~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 212 PQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 23677777777 4666666665544
No 22
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.42 E-value=2.9e-12 Score=130.82 Aligned_cols=172 Identities=12% Similarity=0.125 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhC-CcccHHHHHHHhC--CCHHHH
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEG-TSHLLIDFSELLQ--ICIFEL 320 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~-~PrtLkDIsdv~~--Vsv~~L 320 (661)
....+.|-+++..+++++.+.-.|..++.+....+.+++++...+++||+|+||+.+. .|.++.||+.+++ .+..+|
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 3567899999999999999999999999999999989999999999999999999977 5999999987754 789999
Q ss_pred HHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccH-HHHHHHHHHHHHhhcccccCCCCccceeecc-------c--
Q psy1861 321 GRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTH-EVTMTALRILQRMKKDMLHSGRRPNGLIGKY-------S-- 390 (661)
Q Consensus 321 grtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~-~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA-------~-- 390 (661)
.+..+.|.+.|+.++..+.|..|+.+|++.++++.+.. .+...|..+++....+....+.+|+.||||| .
T Consensus 133 ~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~ 212 (254)
T 2f2c_A 133 INQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNT 212 (254)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999877532 2456788888877777778899999999999 1
Q ss_pred -ccC----HHHHHHHHh----hhhhhhhcchHHH
Q psy1861 391 -CDS----HVDISRVAG----DDYIKSNELPRVI 415 (661)
Q Consensus 391 -~rT----~~eIa~~ag----tiR~~ykeL~~~~ 415 (661)
..+ +.+++..+| +++..++.|.+-+
T Consensus 213 ~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 213 NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 234 788888888 5777777665554
No 23
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.42 E-value=2.7e-12 Score=133.30 Aligned_cols=172 Identities=11% Similarity=0.065 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHHHHHhCC-cccHHHHHHHhC--CCHHH
Q psy1861 244 DNCKRNISSLCNQLRLNQHCLETSFNLYKMALSR-NLTKGRRQILVCAACVYMTCRLEGT-SHLLIDFSELLQ--ICIFE 319 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~-~l~rGR~~~~VaAACLYiACR~~~~-PrtLkDIsdv~~--Vsv~~ 319 (661)
....+.|.+++..+++++.+.-.|..++.+.... +.++++....+++||+|+||+.+.. |.++.||+.+++ .+..+
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 3467889999999999999999999999999986 6788999999999999999999986 899999998874 78999
Q ss_pred HHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCccc--------HHHHHHHHHHHHHhhcccccCCCCccceeecc--
Q psy1861 320 LGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKT--------HEVTMTALRILQRMKKDMLHSGRRPNGLIGKY-- 389 (661)
Q Consensus 320 Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~--------~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA-- 389 (661)
|.+..+.|.+.|+.++..+.|..|+.+|++.+++++.. ......|..+++....+.-..+.+|+.|||||
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~ 210 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY 210 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999998876431 12233456677766556667899999999999
Q ss_pred cccCHHHHHHHHh----hhhhhhhcchHHH
Q psy1861 390 SCDSHVDISRVAG----DDYIKSNELPRVI 415 (661)
Q Consensus 390 ~~rT~~eIa~~ag----tiR~~ykeL~~~~ 415 (661)
.-+.+..+...+| +++..++.|..-.
T Consensus 211 la~~~~~l~~~tg~~~~~i~~c~~~l~~~~ 240 (283)
T 1w98_B 211 HFSSSELMQKVSGYQWCDIENCVKWMVPFA 240 (283)
T ss_dssp HTSCHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4456888888888 6788887775543
No 24
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.23 E-value=2.7e-10 Score=119.70 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhC-CcccHHHHHHHhC--CCHH
Q psy1861 242 TLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEG-TSHLLIDFSELLQ--ICIF 318 (661)
Q Consensus 242 ~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~-~PrtLkDIsdv~~--Vsv~ 318 (661)
.-....+.|.+++..++|++.+.-.|..++.+......++......+++||+|+||+.+. .|.++.+|..+++ .+..
T Consensus 70 ~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 70 MRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 334578999999999999999999999999999999888999999999999999999855 6889999998875 7899
Q ss_pred HHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcccH-HHHHHHHHHHHHhhcccccCCCCccceeecc-------c
Q psy1861 319 ELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTH-EVTMTALRILQRMKKDMLHSGRRPNGLIGKY-------S 390 (661)
Q Consensus 319 ~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~~-~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA-------~ 390 (661)
+|.+..+.|.+.|+.++....|..|+.+|+..++++.+.. .+...|..+++....+....+.+|+.||||| .
T Consensus 150 ~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l 229 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGL 229 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876532 3556788888877777778899999999999 2
Q ss_pred ccC-------HHHHHHHHh----hhhhhhhcchHHHHHhh
Q psy1861 391 CDS-------HVDISRVAG----DDYIKSNELPRVIKECL 419 (661)
Q Consensus 391 ~rT-------~~eIa~~ag----tiR~~ykeL~~~~~~~l 419 (661)
+.. ...+++.+| .++.-+++|.+.+...+
T Consensus 230 ~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 230 GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp C---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 221 245666777 46666666666655444
No 25
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.23 E-value=3e-11 Score=119.31 Aligned_cols=186 Identities=13% Similarity=0.220 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEeecchHHHHHH-HhhhhhccCCCCcceeeecccc
Q psy1861 116 LCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKE-LRVLRSRCGPSPWRHILEDSVI 194 (661)
Q Consensus 116 l~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~Ets~~~Il~~-L~~lcs~CG~~~~g~VLeE~~I 194 (661)
...+.+|+.+-..|.-- .+| .+.|..+++.+...+.+.+.+.+.|..+ +...|+..| +|.-+.|-.-
T Consensus 6 ~~a~~~I~~~~~~L~L~-~~v--------~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee---~p~~l~di~~ 73 (207)
T 1c9b_A 6 MNAFKEITTMADRINLP-RNI--------VDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEG---VPRTFKEICA 73 (207)
T ss_dssp HHHHHHHHHHHHHTTCC-HHH--------HHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTT---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-HHH--------HHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcC---CCCCHHHHHH
Confidence 34566777777666421 122 5667888888888899999999988777 778899999 3555555433
Q ss_pred ccccceeecCCCCccccccccccCCCCCCcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy1861 195 VSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMA 274 (661)
Q Consensus 195 vse~tF~e~~~G~~~~~G~fv~~~~~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a 274 (661)
+..++-. ..|..... -...++ |.. ...+....|.++|+.|++|+.+.+.|..+++.+
T Consensus 74 ~~~~~~~--------~i~~~~~~----ll~~L~--~~l---------~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~ 130 (207)
T 1c9b_A 74 VSRISKK--------EIGRCFKL----ILKALE--TSV---------DLITTGDFMSRFCSNLCLPKQVQMAATHIARKA 130 (207)
T ss_dssp TSSSCHH--------HHHHHHHH----HHHHTT--CCC---------CCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCHH--------HHHHHHHH----HHHHHC--CCc---------CcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3321100 01100000 000010 110 012357899999999999999999999999999
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCC
Q psy1861 275 LSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIP 336 (661)
Q Consensus 275 ~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p 336 (661)
...++..|+++..+||||||+|||..|.|+++.+|+++++|+..+|+++|+.|.+.++..+|
T Consensus 131 ~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p 192 (207)
T 1c9b_A 131 VELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 192 (207)
T ss_dssp HHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSC
T ss_pred HHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999987654
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.07 E-value=5.6e-12 Score=134.69 Aligned_cols=203 Identities=9% Similarity=0.028 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEeecchHHHHHH-HhhhhhccCCCCcceeeecc
Q psy1861 114 NNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKE-LRVLRSRCGPSPWRHILEDS 192 (661)
Q Consensus 114 nel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~Ets~~~Il~~-L~~lcs~CG~~~~g~VLeE~ 192 (661)
|-...+..|+.+...|.- =.+| .+.|..|+..+...+.+.+.+.+.|+.+ +...|+.+| +|+-+.|-
T Consensus 125 ~L~~a~~~I~~~~~~L~L-p~~v--------~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~---~prtl~eI 192 (345)
T 4bbr_M 125 EVQAAFAKITMLCDAAEL-PKIV--------KDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEI 192 (345)
T ss_dssp STTHHHHHHHHHHHHTTC-CHHH--------HHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC---CBCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CHHH--------HHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC---CCccHHHH
Confidence 556677777777776642 1223 5678889988888999999999999987 779999999 46666664
Q ss_pred ccccccceeecCCCCcccccc----ccccCCCCCCcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy1861 193 VIVSEMQFEENAHGGTSALGH----FVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSF 268 (661)
Q Consensus 193 ~Ivse~tF~e~~~G~~~~~G~----fv~~~~~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~ 268 (661)
.-+..+.= ...|. +...-.... ..+|.. .............+|.++|+.|+|+..+...|.
T Consensus 193 ~~~~~v~~--------keigr~~k~l~~~L~l~~----~~~~~~---~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~ 257 (345)
T 4bbr_M 193 QSLIHVKT--------KEFGKTLNIMKNILRGKS----EDGFLK---IDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAE 257 (345)
T ss_dssp HHHHTCCT--------THHHHHHHHHHHCC--------------------------------------------------
T ss_pred HHHhCCCH--------HHHHHHHHHHHHHhCccc----cccccc---cccccCCCCCHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33332210 01111 000000000 000000 000111223567899999999999999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHH
Q psy1861 269 NLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRY 347 (661)
Q Consensus 269 ~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf 347 (661)
+|.+.+.+.+++.||++..+||||||+||+.++.++|++|||++++|+..+|.+.|+.|.+.++.-+ |..|+..+
T Consensus 258 ~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~----~~~~~~~~ 332 (345)
T 4bbr_M 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV----DPQLIANG 332 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----CHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988522 34566655
No 27
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.8e-10 Score=121.51 Aligned_cols=189 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEeecchHHHHHH-HhhhhhccCCCCcceeeecc
Q psy1861 114 NNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKE-LRVLRSRCGPSPWRHILEDS 192 (661)
Q Consensus 114 nel~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~Ets~~~Il~~-L~~lcs~CG~~~~g~VLeE~ 192 (661)
+-...+..|+.+.+.|.- =.+| .++|..++..+...+.+.+.+.+.|..+ |...|+.+| +|.-+.|-
T Consensus 125 ~l~~a~~~I~~~~~~L~L-p~~v--------~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~---~prtl~ei 192 (345)
T 3k7a_M 125 EVQAAFAKITMLCDAAEL-PKIV--------KDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEI 192 (345)
T ss_dssp THHHHHHHHHHHHHHTTC-CHHH--------HTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB---SSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CHHH--------HHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC---CCccHHHH
Confidence 445677888888887741 1223 5678888888888999999999988877 778899999 36666664
Q ss_pred ccccccceeecCCCCcccccc-------ccccCCCCCCcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHhcCCCHHHHH
Q psy1861 193 VIVSEMQFEENAHGGTSALGH-------FVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLE 265 (661)
Q Consensus 193 ~Ivse~tF~e~~~G~~~~~G~-------fv~~~~~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e 265 (661)
.-++.+.-.+ .|. .+......+ . .....-.........+|.++|+.|+|+..+..
T Consensus 193 ~~~~~v~~ke--------Igr~~~~l~~~L~~~~~~~-------~---~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~ 254 (345)
T 3k7a_M 193 QSLIHVKTKE--------FGKTLNIMKNILRGKSEDG-------F---LKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTT 254 (345)
T ss_dssp HHSSSCCSHH--------HHHHHHHHHHHHTCC-----------------------------------------------
T ss_pred HHHHCCCHHH--------HHHHHHHHHHHHhhhhccc-------c---ccccccccCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 4443321110 110 011000000 0 00000112223466899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q psy1861 266 TSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALC 332 (661)
Q Consensus 266 ~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~ 332 (661)
.|..|.+.+...+++.||+|..+||||||+||+.++.++|.++|+++++|+..+|...|+.|.+.+.
T Consensus 255 ~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 255 SAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
No 28
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.65 E-value=2.1e-07 Score=95.28 Aligned_cols=145 Identities=8% Similarity=-0.036 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhC-CcccHHHHHHHhC--CCHHHHH
Q psy1861 245 NCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEG-TSHLLIDFSELLQ--ICIFELG 321 (661)
Q Consensus 245 ~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~-~PrtLkDIsdv~~--Vsv~~Lg 321 (661)
...+.|-+++..++|++.+.-.|..++.+.....-++......+++||+||||+.+. .|.++.++...++ .+..+|.
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~ 130 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLL 130 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHH
Confidence 456889999999999999999999999999988777777899999999999999876 4889999988764 6899999
Q ss_pred HHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCccc-HHHHHHHHHHHHHhhcccccCCCCccceeecc
Q psy1861 322 RTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKT-HEVTMTALRILQRMKKDMLHSGRRPNGLIGKY 389 (661)
Q Consensus 322 rtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~~-~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA 389 (661)
+.-+.|.+.|+.++..+.|..|+.+|...++.+.+. ..+...|..++.....+.-..+-+|+-|||||
T Consensus 131 ~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa 199 (252)
T 1f5q_B 131 TLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLAC 199 (252)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHH
Confidence 999999999999999999999999999999887542 23555677777766555555678999999999
No 29
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=97.26 E-value=2.6e-05 Score=74.10 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.2
Q ss_pred chhhHHhhhhhheeeccccc-ccccccccccccccc
Q psy1861 56 NNLCYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKF 90 (661)
Q Consensus 56 nel~~l~~i~~~ve~ld~~f-~~vceld~~~nf~k~ 90 (661)
|||.+||+||.||++||.|| ++|||+||+|||++.
T Consensus 86 Nel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~v 121 (153)
T 3tjz_C 86 NELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGL 121 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 04899999999999999999 999999999999973
No 30
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.08 E-value=0.00077 Score=67.52 Aligned_cols=189 Identities=8% Similarity=0.010 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhhhhhcccceeeeeechHHHHHHhhHHhhcceEee-cchHHHHHH-HhhhhhccCCCCcceeeecccc
Q psy1861 117 CYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRE-TSQTKVLKE-LRVLRSRCGPSPWRHILEDSVI 194 (661)
Q Consensus 117 ~~l~~i~~~ve~ld~~f~~vcEld~~f~~~k~~~ildE~i~~G~v~E-ts~~~Il~~-L~~lcs~CG~~~~g~VLeE~~I 194 (661)
...++|+...+.|.-- ..+ +..|..++|.+.....+.+ .+.+.|... +...|+..+ ++.-+.|-+.
T Consensus 30 ~~~~~i~~v~~~l~L~-~~t--------~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee---~~~~l~d~~~ 97 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLR-QRV--------LATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE---CPVHIRTICN 97 (235)
T ss_dssp HHHHHHHHHHHHTTCC-HHH--------HHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-HHH--------HHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc---CcccHHHHHH
Confidence 3446666555554311 111 4567778888888888888 888876655 678888888 2333444322
Q ss_pred ccccceeecCCCCccccccccccCCCCCCcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy1861 195 VSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMA 274 (661)
Q Consensus 195 vse~tF~e~~~G~~~~~G~fv~~~~~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a 274 (661)
++..-|.+.-.-....++ ..... .-..++ |... .......|.+++..++++..+...|..+...+
T Consensus 98 ~~~~~~~~~~~~~~~~I~---~~E~~-iL~~L~--f~l~---------~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s 162 (235)
T 1zp2_A 98 EANDLWSLKVKLSRSNIS---EIEFE-IISVLD--AFLI---------VHHPYTSLEQAFHDGIINQKQLEFAWSIVNDS 162 (235)
T ss_dssp HHHTTCCCSSCCCHHHHH---HHHHH-HHHHTT--TCCC---------CCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHccchhhccHHHHH---HHHHH-HHHHCC--CcEE---------ecChHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 221111000000000000 00000 000011 1110 01246788899999999999999999999999
Q ss_pred HhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 275 LSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 275 ~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
......-|+++..+||||||+|++..+.+.+ .+.+...+++..+|..+++.|.+....
T Consensus 163 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 163 YASSLCLMAHPHQLAYAALLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp TTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HcCCchhccCHHHHHHHHHHHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHHHhh
Confidence 8888888999999999999999999886543 344444488999999999999987653
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.07 E-value=0.0012 Score=67.24 Aligned_cols=87 Identities=7% Similarity=-0.024 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHH
Q psy1861 246 CKRNISSLCNQLRLNQ-HCLETSFNLYKMAL-SRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRT 323 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~-~V~e~A~~iyk~a~-e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrt 323 (661)
....|.+++..++++. .+...|..+...+. +.+..-|.++..+||||||+|++..+.|....+++.++|++..+|..+
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~ 218 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPC 218 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHH
Confidence 6789999999999986 78888988888876 334256789999999999999999888888889999999999999999
Q ss_pred HHHHHHHhc
Q psy1861 324 YLRLSQALC 332 (661)
Q Consensus 324 yk~L~k~L~ 332 (661)
++.|.+.+.
T Consensus 219 ~~~l~~~~~ 227 (260)
T 2cch_B 219 LMDLHQTYL 227 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998774
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.05 E-value=0.00067 Score=69.50 Aligned_cols=87 Identities=6% Similarity=-0.053 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHH
Q psy1861 246 CKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYL 325 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk 325 (661)
....|.+++..++++..+...|..+...+......-|.++..+||||||+|++..+.+....+++..+|++..+|..+++
T Consensus 138 p~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~~ 217 (269)
T 2b9r_A 138 PLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQ 217 (269)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 56788999999999999999999999988876667789999999999999999999887888899999999999999999
Q ss_pred HHHHHhc
Q psy1861 326 RLSQALC 332 (661)
Q Consensus 326 ~L~k~L~ 332 (661)
.|.+.+.
T Consensus 218 ~l~~~~~ 224 (269)
T 2b9r_A 218 HLAKNVV 224 (269)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988664
No 33
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.02 E-value=5.6e-05 Score=71.98 Aligned_cols=34 Identities=59% Similarity=1.071 Sum_probs=31.6
Q ss_pred chhhHHhhhhhheeeccccccccccccccccccc
Q psy1861 56 NNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89 (661)
Q Consensus 56 nel~~l~~i~~~ve~ld~~f~~vceld~~~nf~k 89 (661)
|||.+||+||.||++||.||++|||+||++||++
T Consensus 76 Nel~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~ 109 (158)
T 1w63_Q 76 NELITLELIHRYVELLDKYFGSVCELDIIFNFEK 109 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHH
Confidence 0388999999999999999999999999999996
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.93 E-value=0.0024 Score=65.34 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCCHHHH----HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC---------cccHHHHHHH
Q psy1861 246 CKRNISSLCNQLRLNQHCL----ETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGT---------SHLLIDFSEL 312 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V~----e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~---------PrtLkDIsdv 312 (661)
....|.+++..++++.... ..|..+...+......-+.++..+||||||+|++..+. +.+..+++.+
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~ 236 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRV 236 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHH
Confidence 6788999999999997653 46777777765444345789999999999999987642 2357789999
Q ss_pred hCCCHHHHHHHHHHHHHHhcccC
Q psy1861 313 LQICIFELGRTYLRLSQALCISI 335 (661)
Q Consensus 313 ~~Vsv~~Lgrtyk~L~k~L~i~~ 335 (661)
+|++..+|..+++.|.+.+....
T Consensus 237 ~~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 237 IKCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HTSCHHHHHHHHHHHHHHHTTTT
T ss_pred HCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998654
No 35
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.92 E-value=8.9e-05 Score=69.16 Aligned_cols=34 Identities=97% Similarity=1.571 Sum_probs=31.6
Q ss_pred chhhHHhhhhhheeeccccccccccccccccccc
Q psy1861 56 NNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89 (661)
Q Consensus 56 nel~~l~~i~~~ve~ld~~f~~vceld~~~nf~k 89 (661)
|||.++|+||.||++||.||++|||+||++||++
T Consensus 76 N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~ 109 (142)
T 2vgl_S 76 NNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 109 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 0388999999999999999999999999999996
No 36
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.75 E-value=0.0034 Score=63.35 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHH-------HH--
Q psy1861 246 CKRNISSLCNQLRLNQ----HCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFS-------EL-- 312 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~----~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIs-------dv-- 312 (661)
....|.+++..|+.+. .+...|..+...+......-+.++..+||||||+|++..|.+.+..+.. ..
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~ 230 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFV 230 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTS
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhc
Confidence 5688999999999987 6888999999999887778899999999999999999998765543221 23
Q ss_pred hCCCHHHHHHHHHHHHHHhcc
Q psy1861 313 LQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 313 ~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+++..+|..+++.|.+.+..
T Consensus 231 ~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 231 QDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp SSCCHHHHHHHHHHHHTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 389999999999999987754
No 37
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.66 E-value=0.0037 Score=64.62 Aligned_cols=85 Identities=8% Similarity=0.115 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHH
Q psy1861 246 CKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYL 325 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk 325 (661)
..+.|.+++..|+++..+...|..+...+......-+..+..+||||||+|++..+.+. ......++++..+|..+++
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~ 234 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIR 234 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHH
Confidence 46788999999999999999999999999877777789999999999999999988754 4677788999999999999
Q ss_pred HHHHHhc
Q psy1861 326 RLSQALC 332 (661)
Q Consensus 326 ~L~k~L~ 332 (661)
.|.....
T Consensus 235 ~il~ly~ 241 (285)
T 3rgf_B 235 VILKLYE 241 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988665
No 38
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.59 E-value=0.0065 Score=61.44 Aligned_cols=87 Identities=11% Similarity=0.187 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHhCCcccHH----HHHHHh--CCCHH
Q psy1861 246 CKRNISSLCNQLRLNQHCLETSFNLYKMAL-SRNLTKGRRQILVCAACVYMTCRLEGTSHLLI----DFSELL--QICIF 318 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~-e~~l~rGR~~~~VaAACLYiACR~~~~PrtLk----DIsdv~--~Vsv~ 318 (661)
....|.+++..++.+..+...|..+...+. ...+.-+..+..+||||||+|++..|.+.+.. ...+.+ +++..
T Consensus 146 P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~ 225 (257)
T 2ivx_A 146 PHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLE 225 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHH
T ss_pred cHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHH
Confidence 567889999999999999999999998887 56766789999999999999999988654432 234433 68999
Q ss_pred HHHHHHHHHHHHhc
Q psy1861 319 ELGRTYLRLSQALC 332 (661)
Q Consensus 319 ~Lgrtyk~L~k~L~ 332 (661)
+|...++.|...+.
T Consensus 226 ~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 226 LLDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998775
No 39
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.38 E-value=0.0084 Score=60.69 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHh-CCccc----HHHHHHHhCCC
Q psy1861 246 CKRNISSLCNQLRLNQHC----LETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLE-GTSHL----LIDFSELLQIC 316 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V----~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~-~~Prt----LkDIsdv~~Vs 316 (661)
....+.+++..++++... ...|..+...+......-+.++..+||||+|+|++.. +.|.+ ..+++.++|++
T Consensus 152 p~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~ 231 (254)
T 2f2c_A 152 ATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFS 231 (254)
T ss_dssp GGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcC
Confidence 346777888888887643 4567777776665444567899999999999999986 44555 78999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1861 317 IFELGRTYLRLSQALC 332 (661)
Q Consensus 317 v~~Lgrtyk~L~k~L~ 332 (661)
..+|..+++.|.+.+.
T Consensus 232 ~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 40
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=96.22 E-value=0.0096 Score=60.36 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC------cccHHHHHHHhCC
Q psy1861 246 CKRNISSLCNQLRLNQH----CLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGT------SHLLIDFSELLQI 315 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~----V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~------PrtLkDIsdv~~V 315 (661)
....|.+++..++++.. +...|..+...+......-+.++..+||||||+|++..+. +.....++..+|+
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~ 230 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC 230 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc
Confidence 57888889999988754 3556777777776555556789999999999999998875 4567889999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q psy1861 316 CIFELGRTYLRLSQALC 332 (661)
Q Consensus 316 sv~~Lgrtyk~L~k~L~ 332 (661)
+..+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 231 DVSVLQAAVEQILTSVS 247 (257)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988775
No 41
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.94 E-value=0.0012 Score=72.05 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=31.2
Q ss_pred hhHHhhhhhheeeccccccccccccccccccc
Q psy1861 58 LCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89 (661)
Q Consensus 58 l~~l~~i~~~ve~ld~~f~~vceld~~~nf~k 89 (661)
|.+|||||.|+++||.||+++||+||++||++
T Consensus 78 l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~ 109 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYFKELEEESIRDNFVI 109 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHH
Confidence 89999999999999999999999999999996
No 42
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=95.76 E-value=0.031 Score=48.92 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCC------CchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHH
Q psy1861 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKG------RRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRT 323 (661)
Q Consensus 250 I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rG------R~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrt 323 (661)
|+.+|-+||+++ +++.|.++..+.... +..+ -+....+||++|.+||.++....=.-+.+..++.+.++.+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l 83 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRL 83 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHH
Confidence 789999999998 888888887776632 3211 12457899999999999999999888999999999999988
Q ss_pred HHHHHHHh
Q psy1861 324 YLRLSQAL 331 (661)
Q Consensus 324 yk~L~k~L 331 (661)
...+.+..
T Consensus 84 ~~~~e~~~ 91 (95)
T 3m03_A 84 CKQLEKIG 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 43
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=95.36 E-value=0.0018 Score=70.84 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=31.2
Q ss_pred hhHHhhhhhheeeccccccccccccccccccc
Q psy1861 58 LCYLEAIHNFVEVLNEYFHNVCELDLVFNFYK 89 (661)
Q Consensus 58 l~~l~~i~~~ve~ld~~f~~vceld~~~nf~k 89 (661)
|.+|||||.||++||.||++|||+||++||++
T Consensus 76 l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~ 107 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFGKISEENIKNNFVL 107 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHhHHH
Confidence 89999999999999999999999999999996
No 44
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=95.15 E-value=0.03 Score=60.89 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhC--CCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHh
Q psy1861 244 DNCKRNISSLCNQLRLNQ-HCLETSFNLYKMALSR--NLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELL 313 (661)
Q Consensus 244 ~~a~~~I~~i~~~L~Lp~-~V~e~A~~iyk~a~e~--~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~ 313 (661)
.-|..+|+.+|..|+++. .+.+....+|+....+ .++++|..+.++-+|+|+.||..+..++++||-...
T Consensus 280 ~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 458899999999999875 7888888888887764 689999999999999999999999999999997754
No 45
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=95.11 E-value=0.042 Score=58.50 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhC--CCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHh
Q psy1861 241 ITLDNCKRNISSLCNQLRLNQ-HCLETSFNLYKMALSR--NLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELL 313 (661)
Q Consensus 241 r~L~~a~~~I~~i~~~L~Lp~-~V~e~A~~iyk~a~e~--~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~ 313 (661)
+.+.-|..+|+.+|..|+++. .+.+.+..+|..+..+ .++++|..+.++.+|+|+.||..+...++++|-...
T Consensus 213 Kvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 213 KVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 344458899999999999875 5888888888888863 578999999999999999999999999999998754
No 46
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=94.74 E-value=0.13 Score=50.77 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCC---CchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHH
Q psy1861 247 KRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKG---RRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRT 323 (661)
Q Consensus 247 ~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rG---R~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrt 323 (661)
..-|.++..+-++|+.|.+.|.++.+..+-..--+| .++..|+|||+-+|.-+.+.|+++.|+--. +-+..++--.
T Consensus 16 ~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~l-D~sL~Dvelr 94 (260)
T 3h4c_A 16 LNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCL-DSSLGDVELR 94 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-CTTCCCHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHH-hhhhhHHHHH
Confidence 456688888899999999999999999886433334 467899999999999999999999887543 2222223223
Q ss_pred HHHHHHHhcc
Q psy1861 324 YLRLSQALCI 333 (661)
Q Consensus 324 yk~L~k~L~i 333 (661)
-..|++.|++
T Consensus 95 r~Eiv~~l~l 104 (260)
T 3h4c_A 95 RADIVRELHL 104 (260)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHccC
Confidence 3356666654
No 47
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.74 E-value=0.065 Score=55.92 Aligned_cols=88 Identities=7% Similarity=-0.010 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcc-c----HHHHHHHhCCC
Q psy1861 246 CKRNISSLCNQLRLNQH----CLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSH-L----LIDFSELLQIC 316 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~----V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~Pr-t----LkDIsdv~~Vs 316 (661)
.+..|..+...++++.. +...|..+...+......-+.++..+||||||+|++..+... . ...++.++|++
T Consensus 171 p~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~ 250 (306)
T 3g33_B 171 AHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTE 250 (306)
T ss_dssp GGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCC
Confidence 35677788888887743 556777777766655555678999999999999999877422 2 36778899999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy1861 317 IFELGRTYLRLSQALCI 333 (661)
Q Consensus 317 v~~Lgrtyk~L~k~L~i 333 (661)
..+|..++..|.+.+.-
T Consensus 251 ~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 251 VDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 48
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=94.71 E-value=0.018 Score=61.48 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHhCCcccHH----HHHHHh--CCCHH
Q psy1861 246 CKRNISSLCNQLRLNQHCLETSFNLYKMAL-SRNLTKGRRQILVCAACVYMTCRLEGTSHLLI----DFSELL--QICIF 318 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~-e~~l~rGR~~~~VaAACLYiACR~~~~PrtLk----DIsdv~--~Vsv~ 318 (661)
.+..|.+++..|+++..+...|..+...+. ...+.-+..+..|||||||+|++..+.+.+.. ...+.+ +++..
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~ 232 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLE 232 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHH
Confidence 456888899999999999999999998887 45666678999999999999999988654322 233343 57888
Q ss_pred HHHHHHHHHHHHhc
Q psy1861 319 ELGRTYLRLSQALC 332 (661)
Q Consensus 319 ~Lgrtyk~L~k~L~ 332 (661)
+|...++.|...+.
T Consensus 233 ~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 233 LLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887764
No 49
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=94.67 E-value=0.1 Score=54.71 Aligned_cols=77 Identities=12% Similarity=0.274 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhC-C---CCCCCchHHHHHHHHHHHHHH-hCCcccHHHHHHHhCCCHHHHHH
Q psy1861 248 RNISSLCNQLRLNQHCLETSFNLYKMALSR-N---LTKGRRQILVCAACVYMTCRL-EGTSHLLIDFSELLQICIFELGR 322 (661)
Q Consensus 248 ~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~-~---l~rGR~~~~VaAACLYiACR~-~~~PrtLkDIsdv~~Vsv~~Lgr 322 (661)
.+...+|..|+|++.+.+.|..+|+.+... + .+-|. .+....||||+||.. ++...||-.|-..+++++.+.-+
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~ 82 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFN 82 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHH
Confidence 356789999999999999999999999885 3 34444 455566669999975 56789999999999999877644
Q ss_pred HHH
Q psy1861 323 TYL 325 (661)
Q Consensus 323 tyk 325 (661)
-.+
T Consensus 83 k~~ 85 (304)
T 2qdj_A 83 LLK 85 (304)
T ss_dssp HHT
T ss_pred HHH
Confidence 433
No 50
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.47 E-value=0.06 Score=61.64 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhC--CCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHh
Q psy1861 243 LDNCKRNISSLCNQLRLN-QHCLETSFNLYKMALSR--NLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELL 313 (661)
Q Consensus 243 L~~a~~~I~~i~~~L~Lp-~~V~e~A~~iyk~a~e~--~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~ 313 (661)
+.-|..+|+.+|..|+++ +.+.+.+..+|..+... .++++|..+.++.+|+|..||..+...++++|-...
T Consensus 524 y~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 524 YRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 345889999999999887 47888999988888864 679999999999999999999999999999987743
No 51
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.20 E-value=0.33 Score=49.88 Aligned_cols=80 Identities=6% Similarity=-0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCCHH-----------HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhC
Q psy1861 246 CKRNISSLCNQLRLNQH-----------CLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQ 314 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~-----------V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~ 314 (661)
....|.+++..+++++. ....|..+...+.-....-+.++..+||||||+|+. ...++.++|
T Consensus 151 p~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~-------~~~l~~~tg 223 (283)
T 1w98_B 151 IVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS-------SELMQKVSG 223 (283)
T ss_dssp HHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC-------HHHHHHHSC
T ss_pred HHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC-------hHHHHHHhC
Confidence 56778888887776532 223355566655532234678999999999999973 567889999
Q ss_pred CCHHHHHHHHHHHHHHhc
Q psy1861 315 ICIFELGRTYLRLSQALC 332 (661)
Q Consensus 315 Vsv~~Lgrtyk~L~k~L~ 332 (661)
++..+|..+++.|.....
T Consensus 224 ~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 224 YQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999976554
No 52
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=89.53 E-value=1.3 Score=50.74 Aligned_cols=79 Identities=14% Similarity=0.276 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhC-C---CCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHH
Q psy1861 248 RNISSLCNQLRLNQHCLETSFNLYKMALSR-N---LTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRT 323 (661)
Q Consensus 248 ~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~-~---l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrt 323 (661)
.....+|..|+|++.+.++|.+.|+..... + .+--....++.|+.+|.||+.+|...||-.|-..++++..+.
T Consensus 6 ~~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F--- 82 (656)
T 4elj_A 6 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF--- 82 (656)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH---
Confidence 456789999999999999999999999952 2 222234557777777777888999999999999999997765
Q ss_pred HHHHHH
Q psy1861 324 YLRLSQ 329 (661)
Q Consensus 324 yk~L~k 329 (661)
|++|.+
T Consensus 83 F~kikk 88 (656)
T 4elj_A 83 FNLLKE 88 (656)
T ss_dssp HHHHHH
T ss_pred HHHhHh
Confidence 445555
No 53
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=88.92 E-value=1 Score=47.17 Aligned_cols=171 Identities=7% Similarity=-0.055 Sum_probs=92.0
Q ss_pred hHHHHHHhhHHhhcceEeecchHHHHHH-HhhhhhccCCCCcceeeeccccccccceeecCCCCccc----cccccccCC
Q psy1861 145 FYKVYTVVDEMFLAGEIRETSQTKVLKE-LRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSA----LGHFVSSDS 219 (661)
Q Consensus 145 ~~k~~~ildE~i~~G~v~Ets~~~Il~~-L~~lcs~CG~~~~g~VLeE~~Ivse~tF~e~~~G~~~~----~G~fv~~~~ 219 (661)
+..|-.++|.+.....+.+.+.+.|... +...|+..+. +.-++|-+-+. .+.+.. .-.++....
T Consensus 80 ~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~---~~~l~d~v~~~--------~~~p~~~~~~~~~Il~~E~ 148 (323)
T 1jkw_A 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF---NVSSPQFVGNL--------RESPLGQEKALEQILEYEL 148 (323)
T ss_dssp HHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC---CCCHHHHGGGS--------SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC---CCCHHHHHHHh--------ccChhhhHHHHHHHHHHHH
Confidence 3467778888888888888888877655 6677888872 22233321110 000000 000000000
Q ss_pred CCCCcCCCCccCCCCCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH
Q psy1861 220 KGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRL 299 (661)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~ 299 (661)
. .-..++ |... ....-+-|......+...+..++.+..+...|..+...+....+.-+..+..+||||||+|++.
T Consensus 149 ~-iL~~L~--f~l~--v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~ 223 (323)
T 1jkw_A 149 L-LIQQLN--FHLI--VHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASR 223 (323)
T ss_dssp H-HHHHTT--TCCC--CCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHH
T ss_pred H-HHHHCC--CcEE--cCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHH
Confidence 0 000111 2111 1112222222222222111224455678889999999887766666789999999999999999
Q ss_pred hCCcccHHHHHHH-----hCCCHHHHHHHHHHHHHHhc
Q psy1861 300 EGTSHLLIDFSEL-----LQICIFELGRTYLRLSQALC 332 (661)
Q Consensus 300 ~~~PrtLkDIsdv-----~~Vsv~~Lgrtyk~L~k~L~ 332 (661)
.+.+.+. =+... .+.+...|..+.+.|...+.
T Consensus 224 ~~~~~~~-w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 224 AGITMES-YLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp HSCCCTT-HHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred cCCChHH-HHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 8875431 12222 23466777777777766554
No 54
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=86.56 E-value=0.17 Score=40.17 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.9
Q ss_pred hhhhccCCCCcceeeecccccccccee
Q psy1861 175 VLRSRCGPSPWRHILEDSVIVSEMQFE 201 (661)
Q Consensus 175 ~lcs~CG~~~~g~VLeE~~Ivse~tF~ 201 (661)
.+|..|| .|++|++|+.+++|.
T Consensus 31 ~vC~~CG-----lVl~e~~iD~gpEWR 52 (58)
T 1dl6_A 31 MICPECG-----LVVGDRVIDVGSEWR 52 (58)
T ss_dssp EECTTTC-----CEECCSCCCCCCSCC
T ss_pred EEeCCCC-----CEEeccccccCCccc
Confidence 6788888 899999999999886
No 55
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=82.80 E-value=0.28 Score=47.33 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=25.7
Q ss_pred hhhhhccCCCCcceeeecccccccccee---ecC--CCCcccccccc
Q psy1861 174 RVLRSRCGPSPWRHILEDSVIVSEMQFE---ENA--HGGTSALGHFV 215 (661)
Q Consensus 174 ~~lcs~CG~~~~g~VLeE~~Ivse~tF~---e~~--~G~~~~~G~fv 215 (661)
..+|.+|| .||+|++||.+++|. .+. ..+.+++|.-.
T Consensus 42 E~VCsdCG-----LVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs 83 (197)
T 3k1f_M 42 DVVCALCG-----LVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXX 83 (197)
T ss_dssp EEEETTTC-----BBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCB
T ss_pred EEEEcCCC-----CCcCCceeECCCCCcCcCCccccccccccccccc
Confidence 46788888 899999999999665 322 23455666443
No 56
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=76.50 E-value=2.8 Score=35.24 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCC
Q psy1861 291 ACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIP 336 (661)
Q Consensus 291 ACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p 336 (661)
--|+=+.+..|.|....|||..+|++.++|.++++.|.+.-.+..|
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 3466788899999999999999999999999999999998776443
No 57
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=73.46 E-value=56 Score=33.87 Aligned_cols=102 Identities=10% Similarity=-0.045 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC--CCC-CCCchHHHHHHHHHHHHHH-hCCcccHHHHHHHhCCCHHHHH
Q psy1861 246 CKRNISSLCNQLRLNQHCLETSFNLYKMALSR--NLT-KGRRQILVCAACVYMTCRL-EGTSHLLIDFSELLQICIFELG 321 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~--~l~-rGR~~~~VaAACLYiACR~-~~~PrtLkDIsdv~~Vsv~~Lg 321 (661)
..++|.++...-+++..+.-.|..+..++... ++. .......+..+||-+|.+- .....+-+..|.+.|+++.+|.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN 156 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELN 156 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHH
Confidence 34678888888889999998888888887763 332 3456677888888888885 5577899999999999999999
Q ss_pred HHHHHHHHHhcccCCCCChhhHHHHHH
Q psy1861 322 RTYLRLSQALCISIPSMDPCLYVLRYS 348 (661)
Q Consensus 322 rtyk~L~k~L~i~~p~~dP~~yI~Rf~ 348 (661)
+.-+.++..|+.++- ++++.|...+.
T Consensus 157 ~LE~eFL~lLdf~L~-V~~ee~~~cy~ 182 (293)
T 2pmi_B 157 ILENDFLKRVNYRII-PRDHNITLCSI 182 (293)
T ss_dssp HHHHHHHHTTTTCCS-CCTTHHHHHHH
T ss_pred HHHHHHHHHcCCcee-eCHHHHHHHHH
Confidence 999999999987653 44556654333
No 58
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=70.39 E-value=17 Score=36.45 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHh-CCCCCCCchHHHHHHHHHHHHHHhCCccc----HHHHHHHhCCC
Q psy1861 246 CKRNISSLCNQLRLNQH----CLETSFNLYKMALS-RNLTKGRRQILVCAACVYMTCRLEGTSHL----LIDFSELLQIC 316 (661)
Q Consensus 246 a~~~I~~i~~~L~Lp~~----V~e~A~~iyk~a~e-~~l~rGR~~~~VaAACLYiACR~~~~Prt----LkDIsdv~~Vs 316 (661)
+...+..+...++++.. +...|..+...+.- ..+ -.-++..+||||+..+ ..+.+.. ...++..++++
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~-l~~~PS~iAaaa~~~~--l~~~~~~~~~~~~~L~~~t~~~ 225 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRS-AMKRPVLITLACMHLT--MNQKYDYYENRIDGVCKSLYIT 225 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHH-HTSCHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhh-hccCHHHHHHHHHHHH--hccCCCchhhHHHHHHHHHCcC
Confidence 46777777788888753 34456655555543 233 3467888899995444 3444333 34567789999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1861 317 IFELGRTYLRLSQALC 332 (661)
Q Consensus 317 v~~Lgrtyk~L~k~L~ 332 (661)
...|..+++.|.+.|.
T Consensus 226 ~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 226 KEELHQCCDLVDIAIV 241 (252)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 59
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.84 E-value=1.1 Score=34.02 Aligned_cols=23 Identities=17% Similarity=0.598 Sum_probs=19.9
Q ss_pred hhhhhccCCCCcceeeecccccccccee
Q psy1861 174 RVLRSRCGPSPWRHILEDSVIVSEMQFE 201 (661)
Q Consensus 174 ~~lcs~CG~~~~g~VLeE~~Ivse~tF~ 201 (661)
..+|..|| .|++++.|+.+++|.
T Consensus 24 elvC~~CG-----~v~~e~~id~~~ewr 46 (50)
T 1pft_A 24 EIVCAKCG-----YVIEENIIDMGPEWR 46 (50)
T ss_dssp EEEESSSC-----CBCCCCCCCCCSSSS
T ss_pred eEECcccC-----CcccccccccCCccc
Confidence 36799999 899999999998876
No 60
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=64.56 E-value=8.2 Score=36.28 Aligned_cols=48 Identities=10% Similarity=-0.016 Sum_probs=40.9
Q ss_pred CchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 283 RRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 283 R~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
++.+.-+-+.+|+|.+..+.|.+..+||+.++++...|.+....|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345666788899998766679999999999999999999999999774
No 61
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.08 E-value=9.6 Score=34.88 Aligned_cols=46 Identities=11% Similarity=-0.068 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 285 QILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 285 ~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.+.-+-+.+|+|....+.|.+..+||+.++++...|.+....|.+.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455667788887655679999999999999999999999999774
No 62
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=57.57 E-value=14 Score=32.69 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 287 LVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 287 ~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
..+.+..|++-+..+.|.+..+||+.++++...+.+....|.+.
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34455566665555678999999999999999999999999873
No 63
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=55.25 E-value=33 Score=28.71 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHH
Q psy1861 288 VCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRL 327 (661)
Q Consensus 288 VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L 327 (661)
+..+.-||.-.....+.++.++|+.+++++..|.+.|+..
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445556665555558999999999999999999887664
No 64
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=51.94 E-value=14 Score=33.72 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy1861 284 RQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQ 329 (661)
Q Consensus 284 ~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k 329 (661)
+.+.-+-+.+|+|-+ .+.|.+..+||+.++++...|.+.+..|.+
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445556777888763 456899999999999999999999999988
No 65
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=51.91 E-value=31 Score=29.21 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHH
Q psy1861 288 VCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRL 327 (661)
Q Consensus 288 VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L 327 (661)
+..++-||.......+.++.++|+.++++...|.+.|+..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455566655544478999999999999999999887653
No 66
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=51.17 E-value=32 Score=29.10 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHH
Q psy1861 287 LVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRL 327 (661)
Q Consensus 287 ~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L 327 (661)
.+..++-||.-.... +.++.++|+.+++++..|.+.|++.
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455566677666554 8899999999999999999888754
No 67
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=50.52 E-value=25 Score=27.89 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.5
Q ss_pred HhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 299 LEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 299 ~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.++.|.+..|||+.++++..++++....|.+.
T Consensus 21 ~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 21 DDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46678999999999999999999999988764
No 68
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=50.41 E-value=42 Score=28.36 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=48.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-hCCcccHHHHHHHhCC-CHHHHHHHHHHH
Q psy1861 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRL-EGTSHLLIDFSELLQI-CIFELGRTYLRL 327 (661)
Q Consensus 250 I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~-~~~PrtLkDIsdv~~V-sv~~Lgrtyk~L 327 (661)
|..+|..+|++... -.++|+......+.. .+.-.=+-.|++. .....++.|||..+|. +...+.++|++.
T Consensus 24 ~~~lA~~~~~S~~~---l~r~fk~~~G~s~~~-----~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~ 95 (108)
T 3oou_A 24 LKTLGNDFHINAVY---LGQLFQKEMGEHFTD-----YLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKH 95 (108)
T ss_dssp HHHHHHHHTSCHHH---HHHHHHHHHSSCHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHH---HHHHHHHHHCcCHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHH
Confidence 67788888888643 345566665433321 1122223333332 2346799999999997 678888888764
Q ss_pred HHHhcccCCCCChhhHHHH
Q psy1861 328 SQALCISIPSMDPCLYVLR 346 (661)
Q Consensus 328 ~k~L~i~~p~~dP~~yI~R 346 (661)
.| ..|..|-.+
T Consensus 96 ---~G-----~tP~~yR~~ 106 (108)
T 3oou_A 96 ---TG-----ETPNRYRKI 106 (108)
T ss_dssp ---HS-----SCHHHHHHH
T ss_pred ---hC-----cCHHHHHHH
Confidence 44 357766543
No 69
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.98 E-value=55 Score=25.72 Aligned_cols=47 Identities=11% Similarity=-0.058 Sum_probs=35.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCC
Q psy1861 303 SHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFG 354 (661)
Q Consensus 303 PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~ 354 (661)
..+..|||+.++++..++......+.+.|+.. +...+ ..++..+|++
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~----~~~~l-~~~~~~~g~~ 77 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK----SLPHL-VRMALAGGFG 77 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC----SHHHH-HHHHHHHTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC----CHHHH-HHHHHHhCCC
Confidence 36889999999999999999999999988852 23333 3455556654
No 70
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.27 E-value=45 Score=28.11 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHH
Q psy1861 288 VCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRL 327 (661)
Q Consensus 288 VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L 327 (661)
+..++-||.-.. ..|.++.++|+.+++++..|.+.|++.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 445556665554 457999999999999999999888753
No 71
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=42.28 E-value=58 Score=31.21 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHHHHHhC----------CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 283 RRQILVCAACVYMTCRLEG----------TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 283 R~~~~VaAACLYiACR~~~----------~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.+...-+|..|..-+...+ .|.|..+||+.+|++..++.|+.++|.+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 3444445566555555443 57899999999999999999999999875
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=41.23 E-value=49 Score=28.62 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=36.4
Q ss_pred HHHHHHHHhCC-cccHHHHHHHh-CCCHHHHHHHHHHHHHHhcc
Q psy1861 292 CVYMTCRLEGT-SHLLIDFSELL-QICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 292 CLYiACR~~~~-PrtLkDIsdv~-~Vsv~~Lgrtyk~L~k~L~i 333 (661)
-|..+|++.|. |.|+.-||..+ +-++.++...|..|.+.+.-
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 36678999885 89999999999 59999999999999998753
No 73
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=40.48 E-value=33 Score=29.35 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=38.2
Q ss_pred CCCchHHHHH--HHHHHHHHHhCCcccHHHHHHHh-CCCHHHHHHHHHHHHHHhcc
Q psy1861 281 KGRRQILVCA--ACVYMTCRLEGTSHLLIDFSELL-QICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 281 rGR~~~~VaA--ACLYiACR~~~~PrtLkDIsdv~-~Vsv~~Lgrtyk~L~k~L~i 333 (661)
++|+...+.| .++|++-.. +..+|.+|+..+ |.+-.++..+++++.+.+..
T Consensus 24 ~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 24 KRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4455444433 456775444 468999999999 79999999999999998753
No 74
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=39.98 E-value=42 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
|-|.|..|||+.++++..++.+-...|.+.=
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 7899999999999999999888888887743
No 75
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=39.76 E-value=84 Score=26.11 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHh-CCcccHHHHHHHhCC-CHHHHHHHHHH
Q psy1861 249 NISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLE-GTSHLLIDFSELLQI-CIFELGRTYLR 326 (661)
Q Consensus 249 ~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~-~~PrtLkDIsdv~~V-sv~~Lgrtyk~ 326 (661)
.+..+|..+|++... -.++|+......+.. .+-..=+-.|++.- ....++.|||..+|. +...+.+.|++
T Consensus 21 ~~~~lA~~~~~S~~~---l~r~fk~~~g~s~~~-----~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~ 92 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGY---LSIMFKKNFGIPFQD-----YLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKK 92 (103)
T ss_dssp CHHHHHHHTTCCHHH---HHHHHHHHHSSCHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHH---HHHHHHHHHCcCHHH-----HHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 477889999998743 445666665443321 12222233333322 246799999999997 67888888876
Q ss_pred HH
Q psy1861 327 LS 328 (661)
Q Consensus 327 L~ 328 (661)
..
T Consensus 93 ~~ 94 (103)
T 3lsg_A 93 YY 94 (103)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 76
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.68 E-value=28 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=27.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+.+|||+.++++..++......+.+.|+.
T Consensus 14 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 14 YTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999999999999888886
No 77
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.96 E-value=40 Score=27.70 Aligned_cols=33 Identities=6% Similarity=0.080 Sum_probs=28.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQALCIS 334 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~ 334 (661)
-..|+.|||+.+++++.++........+.|...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888888888753
No 78
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.32 E-value=2e+02 Score=24.49 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHH-HHHHHHHHHHHHhC-CcccHHHHHHHhCC-CHHHHHHHHH
Q psy1861 249 NISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQIL-VCAACVYMTCRLEG-TSHLLIDFSELLQI-CIFELGRTYL 325 (661)
Q Consensus 249 ~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~-VaAACLYiACR~~~-~PrtLkDIsdv~~V-sv~~Lgrtyk 325 (661)
.|..+|..++++.... .++|+. . |.++.. +--.-+-.|++.-. ...++.|||..+|. +...+.+.|+
T Consensus 25 ~~~~lA~~~~~S~~~l---~r~fk~------~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk 94 (120)
T 3mkl_A 25 TLARIASELLMSPSLL---KKKLRE------E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFR 94 (120)
T ss_dssp CHHHHHHHTTCCHHHH---HHHHHH------T-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHH---HHHHHH------c-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 3788999999998533 233443 2 444433 33334555555543 56899999999996 5788888876
Q ss_pred HHHHHhcccCCCCChhhHHHHHHhhcC
Q psy1861 326 RLSQALCISIPSMDPCLYVLRYSNRLD 352 (661)
Q Consensus 326 ~L~k~L~i~~p~~dP~~yI~Rf~~~L~ 352 (661)
+. .| ..|..|-.++...+.
T Consensus 95 ~~---~G-----~tP~~yr~~~~~~~~ 113 (120)
T 3mkl_A 95 NY---YG-----MTPTEYQERSAQRLS 113 (120)
T ss_dssp HH---HS-----SCHHHHHHHC-----
T ss_pred HH---HC-----cCHHHHHHHHHhccC
Confidence 54 44 468888888776654
No 79
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=36.30 E-value=27 Score=32.67 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 286 ILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 286 ~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
..-+-+.+|+|.. .+.|.+..+||+.++++...|++.+..|.+.
T Consensus 12 ~yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445567788764 3678999999999999999999999999884
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=36.27 E-value=3.1e+02 Score=26.67 Aligned_cols=137 Identities=9% Similarity=0.157 Sum_probs=83.4
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHhC-CcccHHHHH
Q psy1861 237 ESREITLDNCKRNISSLCNQLRLN----QHCLETSFNLYKMALSRNLTKGRRQI-LVCAACVYMTCRLEG-TSHLLIDFS 310 (661)
Q Consensus 237 ~srEr~L~~a~~~I~~i~~~L~Lp----~~V~e~A~~iyk~a~e~~l~rGR~~~-~VaAACLYiACR~~~-~PrtLkDIs 310 (661)
++.-.....++..+..++..++.. ......+..+.-..+++++..+|... .-+..|+...+.... ....+.++.
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~ 145 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVI 145 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHG
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 555667778899999999887654 34555667777777887776666332 222333433333333 234445555
Q ss_pred HHh-CCCHHHHHHHHHHHHHHhcc-cCCCCChhhHHHHHHhhc--CCCcccHHHHHHHHHHHHHhhc
Q psy1861 311 ELL-QICIFELGRTYLRLSQALCI-SIPSMDPCLYVLRYSNRL--DFGAKTHEVTMTALRILQRMKK 373 (661)
Q Consensus 311 dv~-~Vsv~~Lgrtyk~L~k~L~i-~~p~~dP~~yI~Rf~~~L--~L~~~~~~V~~~A~~Iv~~m~~ 373 (661)
..+ +-+++....+...|.+.+.. .....+|..+++.++..| .|++....|...|..++-.+.+
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 444 44677777777777665542 233456666666665543 2455556899999999888764
No 81
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=35.55 E-value=38 Score=30.73 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 283 RRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 283 R~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
++...-+-+.+|+|-+ .+ + +..+||+..+++...|.+.+..|.+.
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455667788888854 34 5 99999999999999999999999873
No 82
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=35.44 E-value=37 Score=29.92 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHH
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLR 346 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~R 346 (661)
..+.++.+||..+|++...+.+.|++. +| ..|..|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~---~G-----~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT---TG-----MTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH---TS-----SCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH---HC-----cCHHHHHHH
Confidence 567999999999999999999887654 55 357777764
No 83
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.96 E-value=45 Score=27.93 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=27.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+.+|||+.++++..++......+.+.|+.
T Consensus 45 ~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 45 FTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 578999999999999999988888888875
No 84
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.92 E-value=2e+02 Score=23.95 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhC-Cc--ccHHHHHHHhCC-CHHHHHHHHH
Q psy1861 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEG-TS--HLLIDFSELLQI-CIFELGRTYL 325 (661)
Q Consensus 250 I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~-~P--rtLkDIsdv~~V-sv~~Lgrtyk 325 (661)
+..+|..+|++... -.++|+......+. +.+.-.=+-.|++.-. .+ .++.|||..+|. +...+.+.|+
T Consensus 21 ~~~lA~~~~~s~~~---l~r~fk~~~G~s~~-----~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk 92 (108)
T 3mn2_A 21 IEKLTALTGISSRG---IFKAFQRSRGYSPM-----AFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYR 92 (108)
T ss_dssp HHHHHHHHTCCHHH---HHHHHHHHTSSCHH-----HHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHH---HHHHHHHHhCcCHH-----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 67888888888643 34555655433221 1222223444555433 33 599999999997 5778888876
Q ss_pred HHHHHhcccCCCCChhhHHHH
Q psy1861 326 RLSQALCISIPSMDPCLYVLR 346 (661)
Q Consensus 326 ~L~k~L~i~~p~~dP~~yI~R 346 (661)
+. .| ..|..|-.+
T Consensus 93 ~~---~G-----~tP~~yr~~ 105 (108)
T 3mn2_A 93 DM---FG-----EKPSETLQR 105 (108)
T ss_dssp HH---HS-----SCHHHHHHH
T ss_pred HH---HC-----cChHHHHHh
Confidence 54 34 357776554
No 85
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.90 E-value=43 Score=25.97 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=28.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
...|+.|||+.++++..++........+.|..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999888888875
No 86
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=34.83 E-value=60 Score=27.61 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHH
Q psy1861 287 LVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRL 327 (661)
Q Consensus 287 ~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L 327 (661)
.+..++-||... ...|.++.++|+.++++...|.+.|++.
T Consensus 8 ~i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444555555333 2456999999999999999998887654
No 87
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.67 E-value=66 Score=24.75 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=27.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+..|||+.++++..++.+....+.+.|+.
T Consensus 27 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 27 KTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 589999999999999999999999998885
No 88
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=34.40 E-value=64 Score=30.85 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|+.++|.+.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999874
No 89
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=33.81 E-value=48 Score=30.45 Aligned_cols=30 Identities=3% Similarity=-0.076 Sum_probs=27.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
.|.|..+||+.+|++..++.|+.++|.+.=
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 167 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREG 167 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998743
No 90
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=33.03 E-value=63 Score=30.11 Aligned_cols=29 Identities=3% Similarity=-0.109 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999774
No 91
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=32.05 E-value=76 Score=30.00 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHHHHHHh----CCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 283 RRQILVCAACVYMTCRLE----GTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 283 R~~~~VaAACLYiACR~~----~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.+...-+|..|..-+... ..|.|..+||+.+|++..++.|+.++|.+.
T Consensus 162 ~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 162 LDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 444444555444333222 257899999999999999999999999764
No 92
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=31.99 E-value=82 Score=29.12 Aligned_cols=47 Identities=11% Similarity=-0.061 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHhC---CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 284 RQILVCAACVYMTCRLEG---TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 284 ~~~~VaAACLYiACR~~~---~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
+...-+|..|..-+...+ .|.|..+||+.+|++..++.|..++|.+.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 344445555555555444 48899999999999999999999999874
No 93
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=31.40 E-value=75 Score=32.41 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=26.9
Q ss_pred hCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 300 EGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 300 ~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
..-+.+..|||+.++|+..+|+|-...+.+.
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456999999999999999999999888664
No 94
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=30.94 E-value=77 Score=27.70 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHH
Q psy1861 285 QILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRL 327 (661)
Q Consensus 285 ~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L 327 (661)
...+..++-||... -..+.++.++|+.++++...|.+.|++.
T Consensus 10 ~~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 10 AITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34455555555443 3456899999999999999999888754
No 95
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.65 E-value=81 Score=24.90 Aligned_cols=44 Identities=7% Similarity=-0.023 Sum_probs=31.9
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhcccCC---CCCh--hhHHHHHHhhcCCCcc
Q psy1861 305 LLIDFSELLQICIFELGRTYLRLSQALCISIP---SMDP--CLYVLRYSNRLDFGAK 356 (661)
Q Consensus 305 tLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p---~~dP--~~yI~Rf~~~L~L~~~ 356 (661)
|++|||..+||+..++.+... - .+ .+.| ..-|.+.+..||..++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn-------g-~~~~~~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN-------G-KAKQYRVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH-------T-CTTTTTCTTHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHc-------C-CCCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 789999999999999988753 1 12 2333 4567777888887664
No 96
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=30.42 E-value=1.5e+02 Score=25.19 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=26.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 303 SHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 303 PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
|.++.+||+.++++..++.+..+.|.+.=
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~g 80 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRG 80 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 89999999999999999999999998753
No 97
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=29.90 E-value=1.1e+02 Score=28.67 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999774
No 98
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=29.62 E-value=63 Score=28.04 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCCCchHHHHH--HHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 280 TKGRRQILVCA--ACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 280 ~rGR~~~~VaA--ACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.++|+...+.| .++|++... +..+|.+|+..+|-+-.++..+++++.+.+..
T Consensus 27 s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 27 GPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 34555544433 567775554 56899999999999999999999999998864
No 99
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.34 E-value=86 Score=25.40 Aligned_cols=30 Identities=7% Similarity=-0.095 Sum_probs=27.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+.+|||+.++++..++......+.+.|+.
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 689999999999999999999988888875
No 100
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=29.31 E-value=94 Score=26.34 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHh-CCcccHHHHHHHhCC-CHHHHHHHHHHH
Q psy1861 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLE-GTSHLLIDFSELLQI-CIFELGRTYLRL 327 (661)
Q Consensus 250 I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~-~~PrtLkDIsdv~~V-sv~~Lgrtyk~L 327 (661)
|..+|..++++... -.++|+......+.. .+--.=+-.|++.- ....++.|||..+|. +...+.+.|++.
T Consensus 26 ~~~lA~~~~~S~~~---l~r~fk~~~G~s~~~-----~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~ 97 (113)
T 3oio_A 26 TDDIAYYVGVSRRQ---LERLFKQYLGTVPSK-----YYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNH 97 (113)
T ss_dssp HHHHHHHHTSCHHH---HHHHHHHHTSSCHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHH---HHHHHHHHHCcCHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 57788888888643 344555554333211 11112233333332 246899999999996 577888877665
Q ss_pred HHHhcccCCCCChhhHHHH
Q psy1861 328 SQALCISIPSMDPCLYVLR 346 (661)
Q Consensus 328 ~k~L~i~~p~~dP~~yI~R 346 (661)
. | ..|..|-.+
T Consensus 98 ~---G-----~tP~~yR~~ 108 (113)
T 3oio_A 98 F---N-----ITPREERAQ 108 (113)
T ss_dssp H---S-----SCHHHHHHT
T ss_pred H---C-----cCHHHHHHh
Confidence 4 3 346666443
No 101
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=28.64 E-value=91 Score=26.78 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 292 CVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 292 CLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
+|++..+..+.|.++.+||+.++++...+.+..+.|.+.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 444444544458999999999999999999999999874
No 102
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=28.34 E-value=74 Score=27.87 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=30.5
Q ss_pred HHHHHHHhCCc-ccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 293 VYMTCRLEGTS-HLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 293 LYiACR~~~~P-rtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
+|.+-..++-| .|..|||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444455667 899999999999999999999998763
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.13 E-value=68 Score=25.13 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=26.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQALC 332 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~ 332 (661)
.+.|..|||+.++++..++.+......+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999887777777665
No 104
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=27.69 E-value=84 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
+-+.|..|||..++++..++.+....|.+.=
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3478999999999999999999999987744
No 105
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=27.59 E-value=29 Score=27.72 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCCh--hhHHHHHHhhcCCCcc
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDP--CLYVLRYSNRLDFGAK 356 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP--~~yI~Rf~~~L~L~~~ 356 (661)
....|+.|||..+||+..++.+++ +- .+.+.| ..-|...+..||..+.
T Consensus 7 ~~~~t~~diA~~aGVS~sTVSr~l-------n~-~~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 7 ETAATMKDVALKAKVSTATVSRAL-------MN-PDKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp --CCCHHHHHHHTTCCHHHHHHTT-------TC-CCCSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH-------cC-CCCCCHHHHHHHHHHHHHhCCCcc
Confidence 335699999999999999998753 32 234555 3457788888888653
No 106
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=27.10 E-value=67 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
.+.|..+||..++++..++.+...+|.+.=
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 478999999999999999999999997743
No 107
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=27.00 E-value=51 Score=30.22 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=26.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999873
No 108
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.89 E-value=66 Score=26.87 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=27.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCIS 334 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~ 334 (661)
.+.+|||+.++++..++......+.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999988863
No 109
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.34 E-value=91 Score=26.96 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC--CCCCch---HHHHHHHHHHHHHHhCCcccHHHHHHHhC--CCHHHHH
Q psy1861 249 NISSLCNQLRLNQHCLETSFNLYKMALSRNL--TKGRRQ---ILVCAACVYMTCRLEGTSHLLIDFSELLQ--ICIFELG 321 (661)
Q Consensus 249 ~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l--~rGR~~---~~VaAACLYiACR~~~~PrtLkDIsdv~~--Vsv~~Lg 321 (661)
.+..+|..||++...+..-.. .....|. ..|+.. .......+-+ + ..-..+..+|+..++ ++..+|.
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~---~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~--~~~~~s~~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLK---DPVSYGTSKRAPRRKALSVRDERNVIRA-A--SNSCKTARDIRNELQLSASKRTIL 97 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH---SGGGTTCCCCCCCCCSSCHHHHHHHHHH-H--HHCCCCHHHHHHHTTCCSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH---cccccCCcCCCCCCCcCCHHHHHHHHHH-H--hCCCCCHHHHHHHHCCCccHHHHH
Confidence 377899999999876654433 3333332 235432 1112222211 2 222378899999988 6788887
Q ss_pred HHHHH
Q psy1861 322 RTYLR 326 (661)
Q Consensus 322 rtyk~ 326 (661)
+..+.
T Consensus 98 r~l~~ 102 (141)
T 1u78_A 98 NVIKR 102 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.15 E-value=72 Score=24.24 Aligned_cols=30 Identities=13% Similarity=-0.009 Sum_probs=25.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+..|||+.++++..++.+......+.|.-
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 688999999999999998888887777753
No 111
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=26.04 E-value=85 Score=28.75 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=26.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|+.++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 37899999999999999999999999874
No 112
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=25.57 E-value=77 Score=29.26 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=32.1
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCc
Q psy1861 305 LLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGA 355 (661)
Q Consensus 305 tLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~ 355 (661)
|+.++|+.+|++..+|.+..+ +. ..|...+.++|..|+++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~------g~----~~p~~~l~~ia~~~~v~~ 62 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT------RG----AISYDFAAHCALETGANL 62 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH------SS----SCCHHHHHHHHHHHCCCH
T ss_pred CHHHHHHHhCcCHHHHHHHHh------CC----CCCHHHHHHHHHHHCCCH
Confidence 999999999999988877654 22 224678899999998864
No 113
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.50 E-value=72 Score=27.23 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=26.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+.+|||+.+++++.++......+.+.|+.
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 477999999999999999888888888876
No 114
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.40 E-value=15 Score=30.17 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHhCC-cccHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q psy1861 292 CVYMTCRLEGT-SHLLIDFSELLQICIFELGRTYLRLSQALC 332 (661)
Q Consensus 292 CLYiACR~~~~-PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~ 332 (661)
.|..+|++.|. |-|+.-||..++-++..+...|+.|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46789999885 899999999999999999999999988664
No 115
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=25.37 E-value=66 Score=30.30 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
..|.|..+||+.+|++..++.|..++|.+.
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 368889999999999999999999998764
No 116
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=25.21 E-value=98 Score=25.21 Aligned_cols=30 Identities=3% Similarity=0.122 Sum_probs=26.8
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
+-|.+..|||+.++++..++.+..+.|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567899999999999999999999888663
No 117
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=24.92 E-value=3e+02 Score=22.82 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHh-CCcccHHHHHHHhCC-CHHHHHHHHHHH
Q psy1861 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLE-GTSHLLIDFSELLQI-CIFELGRTYLRL 327 (661)
Q Consensus 250 I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~-~~PrtLkDIsdv~~V-sv~~Lgrtyk~L 327 (661)
|..+|..+|++.... .++|+......+.. .+...=+-.|++.- ....++.|||..+|- +...+.++|++.
T Consensus 23 ~~~lA~~~~~S~~~l---~r~fk~~~G~s~~~-----~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~ 94 (107)
T 2k9s_A 23 IASVAQHVCLSPSRL---SHLFRQQLGISVLS-----WREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKC 94 (107)
T ss_dssp HHHHHHHTTSCHHHH---HHHHHHHHSSCHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHH---HHHHHHHHCcCHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 677888999987533 45666665433321 11222233333332 256899999999997 578888887654
Q ss_pred HHHhcccCCCCChhhHH
Q psy1861 328 SQALCISIPSMDPCLYV 344 (661)
Q Consensus 328 ~k~L~i~~p~~dP~~yI 344 (661)
.| ..|..|-
T Consensus 95 ---~G-----~tP~~yr 103 (107)
T 2k9s_A 95 ---TG-----ASPSEFR 103 (107)
T ss_dssp ---HS-----SCHHHHH
T ss_pred ---HC-----cCHHHHH
Confidence 44 3466664
No 118
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=24.66 E-value=66 Score=27.69 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHH
Q psy1861 287 LVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVL 345 (661)
Q Consensus 287 ~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~ 345 (661)
.+..++-||.-... .+.++.++|+.++++...|.+.|++ . | ..|..|+.
T Consensus 8 ~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~---~-G-----~s~~~~~~ 56 (120)
T 3mkl_A 8 MRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLRE---E-E-----TSYSQLLT 56 (120)
T ss_dssp HHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHH---T-T-----CCHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHH---c-C-----CCHHHHHH
Confidence 44455555544433 3889999999999999999888764 2 4 34666654
No 119
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.65 E-value=1.2e+02 Score=28.31 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|+.++|.+.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999999874
No 120
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=24.63 E-value=60 Score=29.90 Aligned_cols=29 Identities=3% Similarity=-0.072 Sum_probs=26.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999774
No 121
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.55 E-value=73 Score=26.17 Aligned_cols=29 Identities=14% Similarity=-0.072 Sum_probs=22.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALC 332 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~ 332 (661)
.+..|||..++++..++.....+..+.|.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47899999999999887776666555543
No 122
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=24.35 E-value=69 Score=27.98 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=24.0
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
+-++|.+|||..+|++..+|.|. ++..+.+
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~l 85 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKAA 85 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHHS
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHHc
Confidence 34699999999999999999999 4444444
No 123
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.88 E-value=60 Score=26.70 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=27.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Q psy1861 304 HLLIDFSELLQICIFELGRTYLRLSQALCI 333 (661)
Q Consensus 304 rtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i 333 (661)
.+.+|||+.++++..++......+.+.|+.
T Consensus 45 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 45 YSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp CCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 678999999999999999999888888875
No 124
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=23.81 E-value=1.2e+02 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
-|.+..|||+.++++..++.+....|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998774
No 125
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=23.68 E-value=77 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 301 GTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 301 ~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
..|.|..+||+.+|++..++.|..++|.+.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999875
No 126
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=23.58 E-value=1.8e+02 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=26.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 303 SHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 303 PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
|.++.|+|+.++++...+.+..+.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999999885
No 127
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=23.00 E-value=1.5e+02 Score=27.57 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=26.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999874
No 128
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.79 E-value=1.5e+02 Score=23.24 Aligned_cols=40 Identities=8% Similarity=-0.062 Sum_probs=30.9
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcC--CC
Q psy1861 305 LLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLD--FG 354 (661)
Q Consensus 305 tLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~--L~ 354 (661)
|..++|..+||+...|.+..+- .. .|...+.++|..|+ ++
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g------~~----~p~~~l~~ia~~l~~~v~ 54 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR------GR----VPAERCIDIERVTNGAVI 54 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH------TC----CCGGGHHHHHHHTTTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHC------CC----CCHHHHHHHHHHHCCCCc
Confidence 8899999999999988876542 11 23578899999998 54
No 129
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=22.56 E-value=3.4e+02 Score=23.39 Aligned_cols=71 Identities=8% Similarity=0.105 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHh-CCcccHHHHHHHhCC-CHHHHHHHHHHH
Q psy1861 250 ISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLE-GTSHLLIDFSELLQI-CIFELGRTYLRL 327 (661)
Q Consensus 250 I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~-~~PrtLkDIsdv~~V-sv~~Lgrtyk~L 327 (661)
|..+|..+|++.. +-.++|++.....+.. .+...=+-.|++.- ....++.|||..+|. +...+.++|++.
T Consensus 30 l~~lA~~~~~S~~---~l~r~fk~~~G~s~~~-----~l~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~ 101 (129)
T 1bl0_A 30 LEKVSERSGYSKW---HLQRMFKKETGHSLGQ-----YIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNY 101 (129)
T ss_dssp CHHHHHHSSSCHH---HHHHHHHHHHSSCHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHH---HHHHHHHHHHCcCHHH-----HHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4567888888864 3345666665433321 12222233333332 246799999999996 478888887765
Q ss_pred H
Q psy1861 328 S 328 (661)
Q Consensus 328 ~ 328 (661)
.
T Consensus 102 ~ 102 (129)
T 1bl0_A 102 F 102 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 130
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.68 E-value=1.6e+02 Score=21.54 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=32.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCc
Q psy1861 303 SHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGA 355 (661)
Q Consensus 303 PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~ 355 (661)
..|..++|..++++...|.+... +...| +...+.++|..|+++.
T Consensus 14 g~s~~~lA~~~gis~~~i~~~e~------g~~~~---~~~~l~~i~~~l~~~~ 57 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTINGIEK------NKYNP---SLQLALKIAYYLNTPL 57 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT------TSCCC---CHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCCC---CHHHHHHHHHHHCcCH
Confidence 46899999999999988876542 21111 3467889999998864
No 131
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.62 E-value=1.1e+02 Score=24.08 Aligned_cols=45 Identities=4% Similarity=-0.023 Sum_probs=32.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCChhhHHHHHHhhcCCCcc
Q psy1861 303 SHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAK 356 (661)
Q Consensus 303 PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~i~~p~~dP~~yI~Rf~~~L~L~~~ 356 (661)
..|..++|+.+||+...|.+..+ |...| +...+.++|..|+++..
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~------g~~~~---~~~~~~~ia~~l~v~~~ 69 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFN------GINAL---NAYNAALLAKILKVSVE 69 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT------TSSCC---CHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc------CCCCC---CHHHHHHHHHHhCCCHH
Confidence 46899999999999888876532 21111 23788899999988753
No 132
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=21.45 E-value=1.3e+02 Score=25.85 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 292 CVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 292 CLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
+|.+.++..+-|.++.|||+.++++...+.+..+.|.+.
T Consensus 36 vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 36 TLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 333334433368999999999999999999999999874
No 133
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=21.34 E-value=1e+02 Score=25.21 Aligned_cols=33 Identities=15% Similarity=-0.026 Sum_probs=28.6
Q ss_pred HhCCcccHHHHHHHhCCCHHH-HHHHHHHHHHHh
Q psy1861 299 LEGTSHLLIDFSELLQICIFE-LGRTYLRLSQAL 331 (661)
Q Consensus 299 ~~~~PrtLkDIsdv~~Vsv~~-Lgrtyk~L~k~L 331 (661)
.++-+.++.|||+.++++... +.+..+.|.+.=
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~G 59 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAG 59 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCC
Confidence 345578999999999999999 999999998753
No 134
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=21.14 E-value=98 Score=28.45 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=27.1
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHh
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQAL 331 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L 331 (661)
.|.|..+||+.+|++..++.|..++|.+.=
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 191 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEG 191 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998743
No 135
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=21.00 E-value=1.2e+02 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=25.9
Q ss_pred cccHHHHHHHhCCCH-HHHHHHHHHHHHH
Q psy1861 303 SHLLIDFSELLQICI-FELGRTYLRLSQA 330 (661)
Q Consensus 303 PrtLkDIsdv~~Vsv-~~Lgrtyk~L~k~ 330 (661)
|.|..+||+.+|++. .++.|+.++|.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 789999999999999 7999999999774
No 136
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=20.54 E-value=1.4e+02 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=26.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH
Q psy1861 302 TSHLLIDFSELLQICIFELGRTYLRLSQA 330 (661)
Q Consensus 302 ~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~ 330 (661)
.|.|..+||+.+|++..++.|+.++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999999874
Done!