BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1863
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 63/122 (51%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
+ A NL Y+ QG+ ++A + ++A D ++ A+ NLGN + DY + E Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285
AL+ D EA YNLG A+ +Y +++E + K + P E Y + + Y GD +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 286 QA 287
+A
Sbjct: 121 EA 122
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + D +A++ + D ++ A NL Y+ QG+ ++A + ++A D
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
++ A+ NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++E
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 257 FHKLQAIVP 265
+ K + P
Sbjct: 126 YQKALELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
++ A NL Y+ QG+ ++A + ++A D N+ A+ NLGN + DY + E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
AL+ D EA YNLG A+ +Y +++E + K + P+ E
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
D NSA A+ NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
E + K + P+ E Y + + Y GD ++A
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + D +A++ + E+ + A NL Y+ QG+ ++A + ++A D
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
N+ A+ NLGN + DY + E Y AL+ D EA NLG A +
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
++ A NL Y+ QG+ ++A + ++A D N++A+ NLGN + DY K E Y
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
AL+ D +A Y G A+ +Y ++E + K + P+
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
D NSA A+ NLGN + DY K E Y AL+ D A YNLG A+ +Y ++
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
E + K + P+ + Y+ + Y GD ++A
Sbjct: 64 EYYQKALELDPNNAKAWYRRGNAYYKQGDYQKA 96
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + D +A++ + E+ +SA NL Y+ QG+ ++A + ++A D
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
N+ A+ GN + DY K E Y AL+ D +A NLG A +
Sbjct: 74 PNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
++ A NL Y+ QG+ ++A + ++A N+ A+ NLGN + DY + E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
AL+ EA YNLG A+ +Y +++E + K + P+ E
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
D NSA A+ NLGN + DY + E Y AL+ EA YNLG A+ +Y +++
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
E + K + P+ E Y + + Y GD ++A
Sbjct: 64 EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 96
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
++ A NL Y+ QG+ ++A + ++A D N+ A+ NLGN + DY + E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 225 HALDNDATCIEALYNLGLAHK 245
AL+ D EA NLG A +
Sbjct: 68 KALELDPNNAEAKQNLGNAKQ 88
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
D NSA A+ NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 255 ECFHKLQAIVPSMPE 269
E + K + P+ E
Sbjct: 64 EYYQKALELDPNNAE 78
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + D +A++ + E+ + A NL Y+ QG+ ++A + ++A D
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 197 TYNSAAFVNLGN 208
N+ A NLGN
Sbjct: 74 PNNAEAKQNLGN 85
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
++ A+ NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++E +
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 259 KLQAIVP 265
K + P
Sbjct: 62 KALELDP 68
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
++ A NL Y+ QG+ ++A + ++A D ++ A+ NLGN + DY + E Y
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 225 HALDND 230
AL+ D
Sbjct: 62 KALELD 67
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
NL+ I QG +E+A ++ +A +AA NL + + + Y A+
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
T +A N+G K + + +L+C+ + I P+ + +AS+++ +G++ +A
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
++A +NL+ + QG++++A +EA + A+ N+GN +D + Y
Sbjct: 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283
A+ + +A NL HK +++ + + P P+ +A +I D
Sbjct: 103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
+E+ ++++ AAF+NL C + +Y K E AL D+ + LY G A +NE
Sbjct: 307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 366
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIA 275
+ + F K+ + P QI+
Sbjct: 367 FESAKGDFEKVLEVNPQNKAARLQIS 392
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 19/150 (12%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A +NL ++ QGE+ A E+A T D A++NLGN + + Y+ AL
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 228 D---------NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
+ C+ Y GL ++ Y ++E + P P+ +A+
Sbjct: 231 SLSPNHAVVHGNLACV--YYEQGLIDLAIDTYRRAIE-------LQPHFPDAYCNLANAL 281
Query: 279 EITGDVEQASD-VNENLLLEAVRNDALSQL 307
+ G V +A D N L L D+L+ L
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 49/117 (41%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
NL+ +Y+ QG ++ A A + A+ NL N + + ++ Y AL
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
T ++L NL + +++ + K + P +AS+ + G +++A
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
+E+ ++++ AAF+NL C + +Y K E AL D+ + LY G A +NE
Sbjct: 307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 366
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQI 274
+ + F K+ + P QI
Sbjct: 367 FESAKGDFEKVLEVNPQNKAARLQI 391
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 182 VEQAEKMAEEACTADTYNSA--AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239
VE + AE+A A A +N+G C + D+ + + AL+ D + +ALY
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR 312
Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVP 265
+ L EY +L K Q I P
Sbjct: 313 RAQGWQGLKEYDQALADLKKAQEIAP 338
>pdb|4AM9|A Chain A, Crystal Structure Of The Yersinia Enterocolitica Type Iii
Secretion Chaperone Sycd In Complex With A Peptide Of
The Translocator Yopd
Length = 148
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+L+F + G+ E A K+ + C D Y+S F+ LG C A Y +L +H+
Sbjct: 26 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY----DLAIHSYSYG 81
Query: 231 AT 232
A
Sbjct: 82 AV 83
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
+NL C +DY K + L D ++ALY LG+A+ +
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--------------GF 137
Query: 264 VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALS 305
+ E LY+ ASL D+ + ++ N L EA + D L+
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLT 179
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQA------IVPSMPEVLYQIASLYEITGDVEQASDV 290
LYN+GL ++Y D++ F + A I+PS+P+ + I ++ G +++A +
Sbjct: 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286
Query: 291 N 291
+
Sbjct: 287 H 287
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 119 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA--------- 169
NW Q N + L ++ + + +T RM+ VL+ E+ AA
Sbjct: 158 NWIKQ---NPKYKYLVKNKKGSPGLT-RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213
Query: 170 ---TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
T L ++ L GE +A A T + + + LG + + E Y A
Sbjct: 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273
Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
L+ I + YNLG++ +L Y +++ F
Sbjct: 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
>pdb|2VGY|A Chain A, Crystal Structure Of The Yersinia Enterocolitica Type Iii
Secretion Translocator Chaperone Sycd (Alternative
Dimer)
Length = 148
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+L+F + G E A + + C D Y+S F+ LG C A Y +L +H+ +
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----DLAIHSYEEG 81
Query: 231 AT 232
A
Sbjct: 82 AV 83
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
+A Y LGL + + E+ ++E + K +I P I YE G
Sbjct: 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155
>pdb|2VGX|A Chain A, Structure Of The Yersinia Enterocolitica Type Iii
Secretion Translocator Chaperone Sycd
Length = 148
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+L+F + G E A + + C D Y+S F+ LG C A Y +L +H+
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----DLAIHSYSYG 81
Query: 231 AT 232
A
Sbjct: 82 AV 83
>pdb|2VGX|B Chain B, Structure Of The Yersinia Enterocolitica Type Iii
Secretion Translocator Chaperone Sycd
Length = 148
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+L+F + G E A + + C D Y+S F+ LG C A Y +L +H+
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----DLAIHSYSYG 81
Query: 231 AT 232
A
Sbjct: 82 AV 83
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 157 VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209
+L+ E T L F + G+ + A+K+ + C D Y++ F+ LG C
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGAC 61
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A T S + GN AMAR++Y K +LY AL
Sbjct: 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQAL 38
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 134 AQDLEINKAVTFLRMNDVSQA-VDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEE- 191
A+D I + +L+ + QA V + K+ + SSA + + Q E+E K+A+E
Sbjct: 49 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME--PKLADEE 106
Query: 192 ---ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI-----EALYNLGLA 243
A +D+ N+ N G ++ Y +E Y L+ + NLGL
Sbjct: 107 YRKALASDSRNARVLNNYGGFLYEQKRY---EEAYQRLLEASQDTLYPERSRVFENLGLV 163
Query: 244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
+ + + + E F K + + P V ++A L
Sbjct: 164 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 197
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 126 RNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVL-KSCDEMTSSAATNLSFIYFLQG--EV 182
R S +S+ ++ + F D +A + K+ +E A ++F L E+
Sbjct: 17 RGSHMASMTGGQQMGRGSEF---GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
E+A ++A D+ + A+ GN + +E Y + K+++ AL + Y LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,736,742
Number of Sequences: 62578
Number of extensions: 395778
Number of successful extensions: 1049
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 78
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)