BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1863
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61371|IFT88_MOUSE Intraflagellar transport protein 88 homolog OS=Mus musculus
GN=Ift88 PE=1 SV=2
Length = 824
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/341 (39%), Positives = 192/341 (56%), Gaps = 22/341 (6%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S + LA DL
Sbjct: 358 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDL 417
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKA+T+LR D +QAVD LK ++ + S+AATNLSF+Y+L+ E QA A+ A
Sbjct: 418 EINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 477
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+D YN +A N GN A DY K E Y AL ND++C EALYN+GL +K LN ++
Sbjct: 478 NSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEA 537
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-LEAVRNDALSQLHREMK 312
L+ F KL AI+ + +VL QIA++YE+ D QA + L+ + + ALS+L
Sbjct: 538 LDSFLKLHAILRNSAQVLCQIANIYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYD 597
Query: 313 HEAEKC-----ILTSAKLIAPSIE-----DNFSNGYNWCVQSIRNSAHSSLAQDLEINK- 361
E +K S + +IE + +C ++I+ +SL Q ++
Sbjct: 598 SEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQ 657
Query: 362 ---AVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
A F R + +A+D K E+ N+ + FLV
Sbjct: 658 LMVASCFRRSGNYQKALDTYK---EIHRKFPENVECLRFLV 695
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 130/228 (57%), Gaps = 34/228 (14%)
Query: 204 VNLGNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFH 258
VN+GN + + +Y K + Y ALD + I+ + N+G+ +YSD++ F
Sbjct: 236 VNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFE 295
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQ------------------------ASDVNENL 294
+ ++ PS+ I S + I GD E+ + D + NL
Sbjct: 296 HIMSMAPSLKAGFNLILSCFAI-GDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNL 354
Query: 295 LLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 354
L+EA++ND L Q+ RE K AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S + LA
Sbjct: 355 LIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELA 414
Query: 355 QDLEINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFL 398
DLEINKA+T+LR D +QAVD LK ++ + S+AATNLSF+Y+L
Sbjct: 415 NDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYL 462
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 4 PEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNI 63
PEEK ++E+++ L++ESCI D K ALEKAK A KERVL++ +EQ ++ N+
Sbjct: 133 PEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENINL 192
Query: 64 ELTFS---NINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSI------EDNF 114
+LT+S N+ + +A + +AL+ +K++ + ++A + ++ + N+
Sbjct: 193 DLTYSVLFNLASQYSANEMYAEALNTYQVIVKNK----MFSNAGRLKVNMGNIYLKQRNY 248
Query: 115 SNG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS--AA 169
S Y + I S H + + N +TF++ S A++ + M S A
Sbjct: 249 SKAIKFYRMALDQI-PSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAG 307
Query: 170 TNLSFIYFLQGEVEQAEK 187
NL F G+ E+ +K
Sbjct: 308 FNLILSCFAIGDREKMKK 325
>sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens
GN=IFT88 PE=2 SV=2
Length = 833
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 145/214 (67%), Gaps = 4/214 (1%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+TSAKLIAP IE +F+ GY+WCV+ ++ S + LA DL
Sbjct: 367 AIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDL 426
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKAVT+LR D +QAV++LK ++ + S+AATNLS +Y++ + QA A+ A
Sbjct: 427 EINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAV 486
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+D YN AA N GN A DY K E Y AL ND++C EALYN+GL ++ LN ++
Sbjct: 487 NSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 546
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
L+CF KL AI+ + EVLYQIA++YE+ + QA
Sbjct: 547 LDCFLKLHAILRNSAEVLYQIANIYELMENPSQA 580
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 129/227 (56%), Gaps = 33/227 (14%)
Query: 204 VNLGNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFH 258
+N+GN + + +Y K + Y ALD N I+ + N+G+ +YSD++ +
Sbjct: 246 MNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYE 305
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQ-----------------------ASDVNENLL 295
+ ++ P++ + Y + Y GD E+ + D + NL+
Sbjct: 306 HIMSMAPNL-KAGYNLTICYFAIGDREKMKKAFQKLITVPLEIDEDKYISPSDDPHTNLV 364
Query: 296 LEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQ 355
EA++ND L Q+ RE K AEK I+TSAKLIAP IE +F+ GY+WCV+ ++ S + LA
Sbjct: 365 TEAIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELAN 424
Query: 356 DLEINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFL 398
DLEINKAVT+LR D +QAV++LK ++ + S+AATNLS +Y++
Sbjct: 425 DLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYM 471
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 4 PEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNI 63
PEEK +++E+E+ L++ESCI D K ALEKAK A KERVL++ +EQ ++ N+
Sbjct: 143 PEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTTPENINL 202
Query: 64 ELTFS---NINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSI------EDNF 114
+LT+S N+ + + + +AL+ +K++ + ++A ++ ++ + N+
Sbjct: 203 DLTYSVLFNLASQYSVNEMYAEALNTYQVIVKNK----MFSNAGILKMNMGNIYLKQRNY 258
Query: 115 SNGYNWCVQSIRNSAHSSLAQDLEI--NKAVTFLRMNDVSQAVDVLKSCDEMTSS--AAT 170
S + ++ + ++I N VTF++ S A++ + M + A
Sbjct: 259 SKAIKFYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKAGY 318
Query: 171 NLSFIYFLQGEVEQAEKMAEEACT 194
NL+ YF G+ E+ +K ++ T
Sbjct: 319 NLTICYFAIGDREKMKKAFQKLIT 342
>sp|O67178|Y1088_AQUAE Uncharacterized protein aq_1088 OS=Aquifex aeolicus (strain VF5)
GN=aq_1088 PE=3 SV=1
Length = 761
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
++ ++L +YF G VE AE++ ++A + A + LG ++ + + +
Sbjct: 68 SAQGLSDLGLLYFFLGRVEDAERVLKKALKFSDVDDALYARLGALYYSQGKLEEAQHYWE 127
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
AL + +E LYNLG+ H + E +L+ F + + P E
Sbjct: 128 RALSLNPNKVEILYNLGVLHLNKGELEKALDLFERALRLKPDFRE 172
>sp|P49525|YCF3_ODOSI Photosystem I assembly protein ycf3 OS=Odontella sinensis GN=ycf3
PE=3 SV=1
Length = 179
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 12/141 (8%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A E+Y + +L D T LYN+GL + + YS +LE +H+ + +
Sbjct: 43 GKYAEALENYYEALQLEEDPYDRSYT----LYNIGLIYGNNGNYSQALEYYHQALELNSN 98
Query: 267 MPEVLYQIASLYEITG-DVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKL 325
+P+ L IA +Y G + Q + ++NL +RND +L +E +A + + KL
Sbjct: 99 LPQALNNIAVIYHSQGLNALQMQNQDKNL---EIRNDEYLELAKEFFDKAAEYWRQALKL 155
Query: 326 IAPSIEDNFSNGYNWCVQSIR 346
AP DN+ NW + R
Sbjct: 156 -AP---DNYPGAQNWLKVTGR 172
>sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans
GN=B0464.2 PE=2 SV=3
Length = 1150
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACT---ADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
A +L+ +F + E+E+A +A A T D+ + AF +G C A+ + + Y
Sbjct: 285 ALIHLANHFFFKKEIERAWTLAWHAATYNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYY 344
Query: 225 HALD-NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
A N+ A Y LG + H NE ++++CF + +P+ + + + SLY
Sbjct: 345 QARQANNGEHTLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNNTDTMKILGSLY 399
>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis
thaliana GN=SPY PE=1 SV=1
Length = 914
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 18/196 (9%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
I K + N + A D D + A T+ ++ +G + +A + ++A A
Sbjct: 81 IGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALMA 140
Query: 196 D-TYNSAA------FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248
D +Y AA +LG + +G + Y AL D A YNLG+ + +
Sbjct: 141 DASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMM 200
Query: 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-----LEAVRND- 302
+Y ++L C+ K P E + +Y+ GD+E A E L E +N+
Sbjct: 201 QYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLEMAITCYERCLAVSPNFEIAKNNM 260
Query: 303 --ALSQLHREMKHEAE 316
AL+ L ++K E +
Sbjct: 261 AIALTDLGTKVKLEGD 276
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 18/187 (9%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSS----------AATNLSFIYFLQGEVEQAEKMA 189
N V + D+ A+ + C ++ + A T+L L+G+V Q
Sbjct: 225 NMGVIYKNRGDLEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYY 284
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
++A + + + A NLG + Y A + C EA NLG+ +K +
Sbjct: 285 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDN 344
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL------EAVRNDA 303
++EC+ +I P+ + L + +Y + G ++ A+ + E +L EA N
Sbjct: 345 LDKAVECYQMALSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNN-- 402
Query: 304 LSQLHRE 310
L L+R+
Sbjct: 403 LGVLYRD 409
>sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS=Dictyostelium
discoideum GN=trfA PE=2 SV=1
Length = 1390
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%)
Query: 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS 251
+ +D+ ++ + LG C M ++ Y K + Y A+ D ++G+ + +N+Y
Sbjct: 412 SIDSDSSDAQTWYLLGRCYMTQQKYKKAYDAYQQAVYRDGRNPTFWCSIGVLYYQINQYR 471
Query: 252 DSLECFHKLQAIVPSMPEVLYQIASLYE 279
D+L+ + + + P + EV Y + +LYE
Sbjct: 472 DALDAYTRAIRLNPFLSEVWYDLGTLYE 499
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP----EVLYQIASLYEITGDVEQAS 288
E + LG+ +KH +Y SLE F L P +P ++ +QI +YE+ + ++
Sbjct: 311 STEIYFRLGVLYKHQGKYDQSLEYFQHL-VKNPPLPLTTSDIWFQIGHVYELQKEYHKSK 369
Query: 289 DVNENLLLE-AVRNDALSQL 307
D E +L + A + L QL
Sbjct: 370 DAYEKVLKDNATHSKVLQQL 389
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 157 VLKSCDEMTSSAATN--LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214
+++S D +S A T L Y Q + ++A ++A D N + ++G
Sbjct: 409 LMRSIDSDSSDAQTWYLLGRCYMTQQKYKKAYDAYQQAVYRDGRNPTFWCSIGVLYYQIN 468
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274
Y + Y A+ + E Y+LG ++ ++++DSL+ + + + P + ++
Sbjct: 469 QYRDALDAYTRAIRLNPFLSEVWYDLGTLYESCHQHTDSLDAYQRAAELDPHNKHIQSRL 528
Query: 275 ASL 277
A+L
Sbjct: 529 ATL 531
>sp|O60184|CYC8_SCHPO General transcriptional corepressor ssn6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1
Length = 1102
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
AD ++ ++ +G C +A++ Y K E Y A+ D ++G+ + +N+Y D+L
Sbjct: 579 ADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDAL 638
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYE 279
+ + + + P + EV Y + +LYE
Sbjct: 639 DAYSRAIRLNPYISEVWYDLGTLYE 663
>sp|P19737|Y425_SYNP2 TPR repeat-containing protein SYNPCC7002_A0425 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A0425 PE=4 SV=2
Length = 387
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEA 192
+L I AVT+ +ND QA+ L+ ++ S+ + IY Q + QA E+A
Sbjct: 234 ELRIKAAVTWFGLNDRDQAIAFLEEARRLSTRDSAMQIRVGKIYETQNLLPQAIAAYEQA 293
Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
D + AF G+ AM EDY+ Y + T A YN +A + +
Sbjct: 294 SFVDPQSREAFALYGSAAMKTEDYINAIIAYRALTELSPTDPAAFYNFAVALQGRRRSRE 353
Query: 253 SLECF 257
+LE
Sbjct: 354 ALEAL 358
>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Solanum
lycopersicum GN=SPY PE=2 SV=1
Length = 931
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAA-- 202
L S+A+ V D + A T+ +Y +G + +A + E+A AD +Y AA
Sbjct: 100 LAFESFSEAIKV----DPQNACALTHCGILYKDEGRLVEAAESYEKALKADPSYTPAAEC 155
Query: 203 ----FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
++G + +G + Y A+ D+ A YNLG+ + + +Y +L C+
Sbjct: 156 LAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-----LEAVRND---ALSQLHRE 310
K P E + +++ GD+E A E L E +N+ AL+ L +
Sbjct: 216 KAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
Query: 311 MKHEAE 316
+K E +
Sbjct: 276 VKLEGD 281
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 10/167 (5%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSS----------AATNLSFIYFLQGEVEQAEKMA 189
N V F D+ A+ + C ++ + A T+L L+G++ Q
Sbjct: 230 NMGVIFKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
++A + + + A NLG + Y A + C EA NLG+ +K +
Sbjct: 290 KKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296
++EC+ +I P+ + L + +Y + G ++ A+ + E ++
Sbjct: 350 LDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAII 396
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
S + NL +Y +QG+++ A M E+A A+ + A+ NLG + E Y
Sbjct: 368 SQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISLAIEAYEQ 427
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSD 252
L D A N LA ++NE +D
Sbjct: 428 CLKIDPDSRNAGQNRLLAMNYINEGTD 454
>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Petunia
hybrida GN=SPY PE=2 SV=1
Length = 932
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAA------FVNLGNCAMARE 214
D + A T+ +Y +G + +A + ++A AD +Y AA ++G
Sbjct: 112 DPQNACALTHCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAG 171
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274
+ +G + Y A+ D+ A YNLG+ + + +Y +L C+ K P E +
Sbjct: 172 NSQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNM 231
Query: 275 ASLYEITGDVEQASDVNENLL-----LEAVRND---ALSQLHREMKHEAE 316
+Y+ GD+E A E L E +N+ AL+ L ++K E +
Sbjct: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 10/167 (5%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSS----------AATNLSFIYFLQGEVEQAEKMA 189
N V + D+ A+ + C ++ + A T+L L+G++ Q
Sbjct: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
++A + + + A NLG + Y A + C EA NLG+ +K +
Sbjct: 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296
++EC+ I P+ + L + +Y + G ++ A+ + E ++
Sbjct: 350 LDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAII 396
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
S + NL +Y +QG+++ A M E+A A+ + A+ NLG + E Y
Sbjct: 368 SQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISLAIEAYEQ 427
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSD 252
L D A N LA ++NE SD
Sbjct: 428 CLKIDPDSRNAGQNRLLAMNYINEGSD 454
>sp|B2J1S7|YCF3_NOSP7 Photosystem I assembly protein ycf3 OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=ycf3 PE=3 SV=1
Length = 173
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 207 GNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A A +Y + E Y AL ND I LYN+GL + +++ +LE +H+
Sbjct: 42 GMSAQAEGEYAEALEYYEEALTLEEDTNDRGYI--LYNMGLIYASNGDHNKALELYHQAI 99
Query: 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNE 292
+ P +P+ L IA +Y G+ E+ + NE
Sbjct: 100 ELNPRLPQALNNIAVIYHYQGEKEKEAGDNE 130
>sp|P14922|CYC8_YEAST General transcriptional corepressor CYC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CYC8 PE=1
SV=2
Length = 966
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
AD ++ + +LG M R DY + + A++ D+ ++G+ + +++Y D+L
Sbjct: 291 ADPSDATTWYHLGRVHMIRTDYTAAYDAFQQAVNRDSRNPIFWCSIGVLYYQISQYRDAL 350
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYE 279
+ + + + P + EV Y + +LYE
Sbjct: 351 DAYTRAIRLNPYISEVWYDLGTLYE 375
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G+ A E + K EL H + E + LG+ +KH ++S +LECF + I+P
Sbjct: 164 GSLDYAEEAFAKVLELDPHFEKAN----EIYFRLGIIYKHQGKWSQALECF---RYILPQ 216
Query: 267 MP------EVLYQIASLYEITGDVEQASDVNENLLLE 297
P ++ +Q+ S+ E G+ + A + E++L +
Sbjct: 217 PPAPLQEWDIWFQLGSVLESMGEWQGAKEAYEHVLAQ 253
>sp|Q10W18|YCF3_TRIEI Photosystem I assembly protein ycf3 OS=Trichodesmium erythraeum
(strain IMS101) GN=ycf3 PE=3 SV=2
Length = 173
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLEC 256
A+ G A A +Y + E Y AL+ ND + I LYN+GL H E+ +LE
Sbjct: 37 AYYRDGMSAQADGEYAEALENYYEALNLEDDPNDRSYI--LYNIGLIHASNGEHDQALEY 94
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGD 283
+H+ P MP+ L IA ++ G+
Sbjct: 95 YHQALENNPRMPQALNNIAVIFHYRGE 121
>sp|Q8DIQ6|YCF3_THEEB Photosystem I assembly protein ycf3 OS=Thermosynechococcus
elongatus (strain BP-1) GN=ycf3 PE=3 SV=1
Length = 173
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLEC 256
A+ G A A +Y + E Y AL+ D + I LYN+GL H E+ +LE
Sbjct: 37 AYYRDGMSAQADGEYAEALENYQAALELEEDPTDRSYI--LYNIGLIHASNGEHEKALEY 94
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITG 282
+H+ + P MP+ L IA +Y G
Sbjct: 95 YHQALELNPRMPQALNNIAVIYHYLG 120
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
+ +E+A+++ +A + A+++ G + +K KE Y+ AL+ D + Y
Sbjct: 547 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWY 606
Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
NL + + L E +++L+ F++ + P L+ A L + +G+V+ + + LL
Sbjct: 607 NLAIVYIELKEPNEALKNFNRALELNPKHKLALFNSAILMQESGEVKLRPEARKRLL 663
>sp|A0T0D3|YCF3_PHATC Photosystem I assembly protein ycf3 OS=Phaeodactylum tricornutum
(strain CCAP 1055/1) GN=ycf3 PE=3 SV=1
Length = 168
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIE---ALYNLGLAHKHLNEYSDSLECFH 258
++ G A ++ Y + + Y AL + + LYN+GL + + +Y+ +LE +H
Sbjct: 31 SYYRAGMSAQSKGRYAEALQNYYEALQVEEDPYDRSYTLYNIGLIYGNTGKYTQALEFYH 90
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKC 318
+ ++ ++P+ L IA +Y ++ L +++ D +L +E+ +A +
Sbjct: 91 QALSLNANLPQALNNIAVIYH-----------SQALRAQSLEEDEYIELSKELFDKAAEY 139
Query: 319 ILTSAKLIAPSIEDNFSNGYNWCVQSIR 346
+ + KL AP DN+ NW + R
Sbjct: 140 WIQALKL-AP---DNYPGARNWLKVTGR 163
>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa
subsp. japonica GN=SPY PE=3 SV=1
Length = 927
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAA------FVNLGNCAMARE 214
D + A T IY +G + +A + ++A AD +Y AA +LG
Sbjct: 98 DPGNACALTYCGMIYKDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAG 157
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274
+ +G + Y AL+ D+ A YNLG+ + + ++ +L C+ K P E +
Sbjct: 158 NTEEGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNM 217
Query: 275 ASLYEITGDVEQASDVNENLL-----LEAVRND---ALSQLHREMKHEAE 316
+Y+ G++E A E L E +N+ AL+ L ++K E +
Sbjct: 218 GVIYKNRGELEAAIACYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGD 267
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A T+L ++G++ Q ++A + + + A NLG ++ Y AL
Sbjct: 254 ALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELAL 313
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ C EA NLG+ +K + ++EC+ +I P+ + L + +Y + G ++ A
Sbjct: 314 HFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 373
Query: 288 SDV 290
S +
Sbjct: 374 SSM 376
>sp|Q8YS98|YCF3_NOSS1 Photosystem I assembly protein ycf3 OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=ycf3 PE=3 SV=1
Length = 173
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 207 GNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A A +Y + E Y AL ND I LYN+GL + ++ +LE +H+
Sbjct: 42 GMSAQAEGEYAEALEYYEEALTLEEDTNDRGYI--LYNMGLIYASNGDHDKALELYHQAI 99
Query: 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKH------EA 315
+ P +P+ L IA +Y G E+A + ++ EA+ + A R ++ EA
Sbjct: 100 ELNPRLPQALNNIAVIYHYQG--EKAKETGDHDGGEALFDQAADYWIRAIRMAPNNYIEA 157
Query: 316 EKCILTSAKL 325
+ + T+ ++
Sbjct: 158 QNWLKTTGRM 167
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SEC OS=Arabidopsis
thaliana GN=SEC PE=2 SV=1
Length = 977
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 14/220 (6%)
Query: 72 RKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWC-VQSIRNSAH 130
R A A N A + + + EA +C + L P + D SN N Q + + A+
Sbjct: 151 RPNFADAWSNLASAYMRKGRLSEATQCCQQALSL-NPLLVDAHSNLGNLMKAQGLIHEAY 209
Query: 131 SSLAQDLEI---------NKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNLSFIYFL 178
S + + I N A F+ D+++A+ K ++ + A NL +Y
Sbjct: 210 SCYLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKA 269
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
G +A + A ++ AF N+ + + Y AL D +EA
Sbjct: 270 LGRPTEAIMCYQHALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYN 329
Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
NLG A K + +++ C+++ A+ P+ P+ + + ++Y
Sbjct: 330 NLGNALKDIGRVDEAVRCYNQCLALQPNHPQAMANLGNIY 369
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N A ++R +S+A + S + + A +NL + QG + +A EA
Sbjct: 160 NLASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQ 219
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
+ A+ NL M D + + Y A+ +A NLG +K L ++++ C
Sbjct: 220 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMC 279
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + P+ IAS+Y G ++ A
Sbjct: 280 YQHALQMRPNSAMAFGNIASIYYEQGQLDLA 310
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N ++ N + A + K+ +T S+ NL+ IY QG A E D
Sbjct: 364 NLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYNEVLRID 423
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
+ A VN GN + + Y+HA++ T EA NL A+K ++
Sbjct: 424 PLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGHVEAAITS 483
Query: 257 FHKLQAIVPSMPE 269
+ + + P PE
Sbjct: 484 YKQALLLRPDFPE 496
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%)
Query: 180 GEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239
G V++A + + + A NLGN M L+ L N
Sbjct: 339 GRVDEAVRCYNQCLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNN 398
Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
L + +K YSD++ C++++ I P + L + Y+ G V +A
Sbjct: 399 LAIIYKQQGNYSDAISCYNEVLRIDPLAADALVNRGNTYKEIGRVTEA 446
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
+ A +NL+ Y +G + +A + ++A + + A NLGN A+ + Y+
Sbjct: 155 ADAWSNLASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLE 214
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285
A+ T A NL + + +L+ + + + P+ P+ + ++Y+ G
Sbjct: 215 AVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPT 274
Query: 286 QA 287
+A
Sbjct: 275 EA 276
>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Hordeum
vulgare GN=SPY PE=2 SV=1
Length = 944
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A T+L ++G++ Q ++A + + + A NLG ++ Y AL
Sbjct: 254 ALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELAL 313
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ C EA NLG+ +K + ++EC+ +I P+ + L + +Y + G ++ A
Sbjct: 314 HFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 373
Query: 288 SDVNENLLL 296
+ + E +L
Sbjct: 374 ASMIEKAIL 382
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 18/196 (9%)
Query: 139 INKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
I K + + QA+D D + A T+ IY +G + +A + ++A +A
Sbjct: 72 IGKGICLQAQSLPRQALDCFTEAVKVDPKNACALTHCGMIYKDEGHLVEAAEAYQKARSA 131
Query: 196 DTYNSAA-------FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248
D AA +LG + G + Y AL+ D+ A YNLG+ + +
Sbjct: 132 DPSYKAASEFLAIVLTDLGTSLKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMM 191
Query: 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-----LEAVRND- 302
++ +L C+ K P E + +Y+ G+++ A + L E +N+
Sbjct: 192 QFDVALTCYEKAALERPLYAEAYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAKNNM 251
Query: 303 --ALSQLHREMKHEAE 316
AL+ L ++K E +
Sbjct: 252 AIALTDLGTKVKIEGD 267
>sp|B1XNN2|YCF3_SYNP2 Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=ycf3 PE=3 SV=1
Length = 173
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHAL-----DNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A+ G A A +Y + E Y AL ND + I LYN+GL + ++ +LE
Sbjct: 37 AYYRDGMSAQADGEYSEALENYEEALRLEDDPNDRSYI--LYNMGLIYASNGDHHKALEL 94
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288
+H+ + P MP+ L IA +Y G+ + S
Sbjct: 95 YHEAIDLNPRMPQALNNIAVVYHYQGEKAKQS 126
>sp|Q8X5M0|BCSC_ECO57 Putative cellulose synthase operon protein C OS=Escherichia coli
O157:H7 GN=bcsC PE=5 SV=3
Length = 1154
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 162 DEMTSSAATNLSFIYFLQGEV-------EQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214
D+ S N ++ QG+ ++AE++ ++A D +S A + LG+ AMAR+
Sbjct: 337 DKWNSLLKVNRYWLAIQQGDAALKANNPDRAERLFQQARNVDNTDSYAVLGLGDVAMARK 396
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
DY + Y L D+ A+ GLA+ + + + E F
Sbjct: 397 DYPAAERYYQQTLRMDSGNTNAVR--GLANIYRQQSPEKAEAF 437
>sp|P37650|BCSC_ECOLI Cellulose synthase operon protein C OS=Escherichia coli (strain
K12) GN=bcsC PE=1 SV=3
Length = 1157
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 162 DEMTSSAATNLSFIYFLQGEV-------EQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214
D+ S N ++ QG+ ++AE++ ++A D +S A + LG+ AMAR+
Sbjct: 340 DKWNSLLKVNRYWLAIQQGDAALKANNPDRAERLFQQARNVDNTDSYAVLGLGDVAMARK 399
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
DY + Y L D+ A+ GLA+ + + + E F
Sbjct: 400 DYPAAERYYQQTLRMDSGNTNAVR--GLANIYRQQSPEKAEAF 440
>sp|Q8BW49|TTC12_MOUSE Tetratricopeptide repeat protein 12 OS=Mus musculus GN=Ttc12 PE=2
SV=1
Length = 704
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
T + AF+ LG DY K AL D C +A +++G AH L YS + EC
Sbjct: 143 TNRAQAFIKLG-------DYQKALVDCDWALKCDENCTKAYFHMGKAHVALKNYSKAKEC 195
Query: 257 FHKLQAIVPSM 267
+ K++ I P +
Sbjct: 196 YQKIEEINPKL 206
>sp|Q19V63|YCF3_CHLAT Photosystem I assembly protein ycf3 OS=Chlorokybus atmophyticus
GN=ycf3 PE=3 SV=2
Length = 167
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L V A D LYN+GL H E++ +LE +++ PS
Sbjct: 49 GEYAEALQNYYEAMRLEVDAYDRSYI----LYNIGLIHTSNGEHAKALEYYYQAIERNPS 104
Query: 267 MPEVLYQIASLYEITGD 283
+P+ L IA +Y G+
Sbjct: 105 LPQALNNIAVIYHYRGE 121
>sp|Q3M690|YCF3_ANAVT Photosystem I assembly protein ycf3 OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=ycf3 PE=3 SV=2
Length = 173
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 207 GNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A A +Y + E Y AL ND I LYN+GL + ++ +LE +H+
Sbjct: 42 GMSAQAEGEYAEALEYYEEALTLEEDTNDRGYI--LYNMGLIYASNGDHDKALELYHQAI 99
Query: 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKH------EA 315
+ P +P+ L IA +Y G E+A + ++ EA+ + A R ++ EA
Sbjct: 100 ELNPRLPQALNNIAVIYHYKG--EKAKEDGDHDGGEALFDQAADYWIRAIRMAPNNYIEA 157
Query: 316 EKCILTSAKL 325
+ + T+ ++
Sbjct: 158 QNWLKTTGRM 167
>sp|Q9TL02|YCF3_NEPOL Photosystem I assembly protein ycf3 OS=Nephroselmis olivacea
GN=ycf3 PE=3 SV=1
Length = 171
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L V A D LYN+GL H E++ +LE +++ P
Sbjct: 49 GEYAEALQNYYEAMRLEVDAYDRSYI----LYNIGLIHTSNGEHAKALEYYYQALERNPY 104
Query: 267 MPEVLYQIASLYEITGD--VEQASDVNENLLLE 297
+P+ L IA +Y G+ +E + NLL +
Sbjct: 105 LPQALNNIAVIYHYRGEQAIESGNSRISNLLFD 137
>sp|P54389|YPIA_BACSU TPR repeat-containing protein YpiA OS=Bacillus subtilis (strain
168) GN=ypiA PE=4 SV=1
Length = 423
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%)
Query: 158 LKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV 217
LK D +S LS Y +G E+A K A+E D YN F+ A+
Sbjct: 230 LKELDPSYTSLYMPLSKSYEAEGMYEEALKTAKEGIRYDEYNKELFLYAAKMALKIGKSE 289
Query: 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
+GK+L AL D +EAL+ L + +Y ++ ++++ P+ + +AS
Sbjct: 290 EGKKLLQEALALDPGFVEALHTLLAVYHKEEDYDQIIDLIQEVRSYGEEDPKYNWYLASA 349
Query: 278 Y 278
Y
Sbjct: 350 Y 350
>sp|B7KKZ8|YCF3_CYAP7 Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain PCC
7424) GN=ycf3 PE=3 SV=1
Length = 173
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 207 GNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A A +Y + + Y AL ND + I LYN+G+ H E+ +LE +H+
Sbjct: 42 GMSAQADGEYKEALDNYYEALKLEDDANDRSYI--LYNIGIIHGSNGEHERALEYYHEAI 99
Query: 262 AIVPSMPEVLYQIASLYEITGD 283
+ P++P L IA +Y G+
Sbjct: 100 ELNPNLPSALNNIAVIYHYQGE 121
>sp|Q4G394|YCF3_EMIHU Photosystem I assembly protein ycf3 OS=Emiliania huxleyi GN=ycf3
PE=3 SV=1
Length = 171
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA---LYNLGLAHKHLNEYSDSLECFH 258
++ G A + DY + E Y AL + + LYN+GL + + +YS SL+ +H
Sbjct: 35 SYYRYGMSAQSSGDYAEALENYYEALKLEEDPFDRSYILYNIGLIYGNNGDYSKSLDYYH 94
Query: 259 KLQAIVPSMPEVLYQIASLYEITG 282
+ + +P+ L IA +Y G
Sbjct: 95 QALDLNSRLPQALNNIAVIYHYQG 118
>sp|A6YG60|YCF3_LEPTE Photosystem I assembly protein ycf3 OS=Leptosira terrestris GN=ycf3
PE=3 SV=1
Length = 167
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L V A D YN+GL H E++ +LE +++ PS
Sbjct: 49 GEYAEALQNYYEAMRLEVDAYDRSYI----FYNIGLIHTSNGEHARALEYYYQALERNPS 104
Query: 267 MPEVLYQIASLYEITGD 283
+P+ L IA +Y G+
Sbjct: 105 LPQALNNIAVIYHYRGE 121
>sp|Q06SJ8|YCF3_STIHE Photosystem I assembly protein ycf3 OS=Stigeoclonium helveticum
GN=ycf3 PE=3 SV=1
Length = 167
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L V A D LYN+GL H E++ +LE +++ PS
Sbjct: 49 GEYAEALQNYYEAMRLEVDAYDRSYI----LYNIGLIHTSNGEHARALEYYYQALERNPS 104
Query: 267 MPEVLYQIASLYEITGD 283
+P L IA +Y G+
Sbjct: 105 LPSALNNIAVIYHYRGE 121
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
+ +E+A+++ +A + A+++ G + +K KE Y+ AL+ D + Y
Sbjct: 542 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWY 601
Query: 239 NLGLAHKHLNEYSDSLEC-FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
NL + H L E +++L+ F++ + P L+ A + + +G+V+ + + LL
Sbjct: 602 NLAIVHIELKEPNEALKKNFNRALELNPKHKLALFNSAIVMQESGEVKLRPEARKRLL 659
>sp|Q1KVR8|YCF3_SCEOB Photosystem I assembly protein ycf3 OS=Scenedesmus obliquus GN=ycf3
PE=3 SV=1
Length = 170
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L V A D LYN+GL H E+ +LE +++ PS
Sbjct: 49 GEYAEALQNYYEAMRLEVDAYDRSYI----LYNIGLIHTSNGEHGRALEYYYQALERNPS 104
Query: 267 MPEVLYQIASLYEITGD 283
+P L IA +Y G+
Sbjct: 105 LPSALNNIAVIYHYRGE 121
>sp|Q9MUT7|YCF3_MESVI Photosystem I assembly protein ycf3 OS=Mesostigma viride GN=ycf3
PE=3 SV=1
Length = 173
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L + D LYN+GL H E+ +LE +++ PS
Sbjct: 49 GEYAEALQNYYEAMRLEIDPYDRSYI----LYNIGLIHTSNGEHGKALEYYYQAIERNPS 104
Query: 267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKL- 325
+P+ L IA +Y G EQA + E + N A S + ++ I L
Sbjct: 105 LPQALNNIAVIYHYRG--EQAIEEGNIATSEILFNQAASYWKQAIRLAPNSYIEAQNWLK 162
Query: 326 IAPSIEDNFS 335
I IEDN +
Sbjct: 163 ITGRIEDNIN 172
>sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Eustoma
exaltatum subsp. russellianum GN=SPY PE=2 SV=1
Length = 918
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 126 RNSAHSSLAQDLEINKAVTFLRMNDVSQAVDV-LKSCDEMTSSAATNLSFIYFLQGEVEQ 184
R + S D N + + D+ AV + A T+L L+G+++Q
Sbjct: 197 RAATESPTYADAYCNTGIIYKNRGDLCLAVSPNFEIAKNNMGIALTDLGTKEKLEGDIDQ 256
Query: 185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH---ALDNDATCIEALYNLG 241
++A + + S A NLG +A + +K + A + C EA NLG
Sbjct: 257 GVAYYKKALYYNWHYSDAMYNLG---VAYGEMLKFDMAIIFDELAFHFNPHCAEACNNLG 313
Query: 242 LAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296
+ +K + ++EC+ K +I P+ + L + ++ + G ++ A+ + E ++
Sbjct: 314 VIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTVQGKMDAAASMIEKAIV 368
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 20/191 (10%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
I K + N + A D D + A T+ +Y +G + +A ++A A
Sbjct: 70 IGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILYKDEGRLVEAASY-QKALQA 128
Query: 196 D-TYNSAA------FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248
D +Y AA +LG +G + Y A+ D A YNLG+ + +
Sbjct: 129 DPSYKPAAECLATVLNDLGTSLKGNTQ--EGIQKYYEAVKIDPHYAPACYNLGVVYSEMM 186
Query: 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND---ALS 305
+Y +L C+ + P+ + +Y+ GD+ A N E +N+ AL+
Sbjct: 187 QYDVALSCYERAATESPTYADAYCNTGIIYKNRGDLCLAVSPN----FEIAKNNMGIALT 242
Query: 306 QLHREMKHEAE 316
L + K E +
Sbjct: 243 DLGTKEKLEGD 253
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N V + +++ +AV+ + S S + NL ++ +QG+++ A M E+A A+
Sbjct: 311 NLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGVVFTVQGKMDAAASMIEKAIVAN 370
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
+ A+ NLG + E Y L D A N LA ++NE +D
Sbjct: 371 PTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGAD 426
>sp|Q0P3N1|YCF3_OSTTA Photosystem I assembly protein ycf3 OS=Ostreococcus tauri GN=ycf3
PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
+F+Y+ G QAE G A A ++Y + L V D
Sbjct: 35 AFVYYRDGMSAQAE--------------------GEYAEALQNYAQAMRLEVDPYDRSFI 74
Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283
YN+GL H E++ +LE +++ PS+P+ L IA +Y G+
Sbjct: 75 ----FYNIGLIHTSNGEHTKALEYYYQALDRNPSLPQALNNIAVIYHYRGE 121
>sp|B0JVY3|YCF3_MICAN Photosystem I assembly protein ycf3 OS=Microcystis aeruginosa
(strain NIES-843) GN=ycf3 PE=3 SV=1
Length = 173
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 207 GNCAMAREDYVKGKELYVHAL-----DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A A +Y + + Y AL ND + I LYN+G+ H E+ +LE + +
Sbjct: 42 GMSAQADGEYAEALDNYYEALTLEEDPNDRSYI--LYNIGIIHASNGEHEKALEYYEEAI 99
Query: 262 AIVPSMPEVLYQIASLYEITGD 283
+ P MP L IA +Y G+
Sbjct: 100 QLNPRMPSALNNIAVIYHFQGE 121
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
SA NL +Y G++ AE+ A A AA++NLG A+ Y K Y A
Sbjct: 479 SALMNLGNLYREHGQLSTAEEYIRLALQAYPAFPAAWMNLGIVQSAQGKYDKALASYEKA 538
Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
L A YN+G + Y+++L + A+ P P+ I ++ + G +
Sbjct: 539 LKYRANFAVCYYNMGNLYLEQKRYAEALHHWQHAVALNPRQPKAWANILTMLDNKGLQDD 598
Query: 287 ASDVNENLLLEAVRND 302
A ++ N L+ + ND
Sbjct: 599 ALRIS-NQALQHLPND 613
>sp|A0T0R5|YCF3_THAPS Photosystem I assembly protein ycf3 OS=Thalassiosira pseudonana
GN=ycf3 PE=3 SV=1
Length = 184
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIE---ALYNLGLAHKHLNEYSDSLECFH 258
A+ G A A DY + E Y +L D + LYN+GL + Y +LE +H
Sbjct: 33 AYYKAGMAAQAEGDYAEALENYYESLYLDEDQYDRSYTLYNIGLIYAKNENYPRALEYYH 92
Query: 259 KLQAIVPSMPEVLYQIASLYEITG 282
+ ++ ++P+ L IA++Y G
Sbjct: 93 QAVSLNSNLPQALNNIAAIYHRQG 116
>sp|Q85FT1|YCF3_CYAME Photosystem I assembly protein ycf3 OS=Cyanidioschyzon merolae
GN=ycf3 PE=3 SV=1
Length = 158
Score = 38.9 bits (89), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIE---ALYNLGLAHKHLNEYSDSLECFHKLQAI 263
G A A +Y + E Y HAL+ + I+ +YN+GL + E +LE +H+ +
Sbjct: 42 GMAAQAEGEYAQALESYYHALEFEEDVIDRSYIIYNIGLIYASNGEDEQALEYYHQALEL 101
Query: 264 VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298
P + + L IA +Y G Q +E LL +A
Sbjct: 102 NPRLVQALNNIAVIYHKQGMTYQ----DEQLLQKA 132
>sp|B1X0Z5|YCF3_CYAA5 Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain ATCC
51142) GN=ycf3 PE=3 SV=1
Length = 173
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 207 GNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A A +Y + + Y AL ND + I LYN+G+ H E++ +L+ + +
Sbjct: 42 GMSAQADGEYAEALDNYYEALKLEEDANDRSYI--LYNIGIIHASNGEHAKALDYYEQAV 99
Query: 262 AIVPSMPEVLYQIASLYEITGD 283
+ P MP L IA +Y G+
Sbjct: 100 DLNPQMPSALNNIAVIYHYQGE 121
>sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STI1 PE=1 SV=1
Length = 589
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY-NLGLAHKHLNEY 250
+ TAD Y GN A +DY K EL+ A++ T LY N + L ++
Sbjct: 2 SLTADEYKQQ-----GNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSACYTSLKKF 56
Query: 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLEA---VRNDALSQ 306
SD+L ++ I PS + ++ + + GD+++A S+ + L L+A + L Q
Sbjct: 57 SDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKAAKEGLDQ 116
Query: 307 LHR 309
+HR
Sbjct: 117 VHR 119
>sp|Q08814|YCF3_GALSU Photosystem I assembly protein ycf3 OS=Galdieria sulphuraria
GN=ycf3 PE=3 SV=1
Length = 167
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 207 GNCAMAREDYVKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
G A + +Y + Y AL+ D + I LYN+GL H EY +L+ +HK
Sbjct: 42 GMSAQSEGEYAEALANYYEALNLEEDPYDKSFI--LYNIGLIHASNGEYVKALDYYHKAL 99
Query: 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILT 321
+P+ L IA +Y +AS++N+ LE + + HEA +
Sbjct: 100 EANNKLPQALNNIAVIYHYQA--VKASEIND---LETA---------QALFHEAAQYWKQ 145
Query: 322 SAKLIAPSIEDNFSNGYNWCVQSIR 346
+ KL APS N+ NW + + R
Sbjct: 146 AIKL-APS---NYIEAQNWLLSTGR 166
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A NL I + E+++AE++ A +AA++NLG + + + ++ Y A+
Sbjct: 518 AMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAI 577
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + YNLG + LN + D+L + + P + L + TG++ QA
Sbjct: 578 KHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILLDNTGNLAQA 637
Query: 288 SDVNENLLLEAVRND 302
V LE + ND
Sbjct: 638 EAVGRE-ALELIPND 651
>sp|Q9H892|TTC12_HUMAN Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=2
SV=2
Length = 705
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262
+ N M EDY K AL D C +A +++G A+ L YS S EC+ K+
Sbjct: 143 YTNRAQAYMKLEDYEKALVDCEWALKCDEKCTKAYFHMGKANLALKNYSVSRECYKKILE 202
Query: 263 IVPSMPEVLYQIASLYEITGDVEQASDVNE---NLLLEAVRNDALS 305
I P + Q+ Y D+++ +D+ E + LL++ +N A++
Sbjct: 203 INPKLQ---TQVKG-YLNQVDLQEKADLQEKEAHELLDSGKNTAVT 244
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A NL I + E+++AE++ A +AA++NLG + + + + ++ Y A+
Sbjct: 518 AMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEEAEQSYRTAI 577
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + YNLG + LN + D+L + + P + L + TG++ QA
Sbjct: 578 KHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILLDNTGNLAQA 637
Query: 288 SDVNENLLLEAVRND 302
V L+ + ND
Sbjct: 638 EAVGRE-ALQLIPND 651
>sp|P17885|BIMA_EMENI Protein bimA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=bimA PE=2 SV=1
Length = 806
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 135 QDLEINKAVTFLRMNDVSQA--VDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEA 192
+D+EI V + NDV A L D ++ A + + Q + +QA K + A
Sbjct: 548 EDMEIYSTVLWHLKNDVELAYLAHELMDVDRLSPEAWCAVGNSFSHQRDHDQALKCFKRA 607
Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
D + + F G+ +A E+Y K + Y ++ D+ A Y LG + + +
Sbjct: 608 TQLDPHFAYGFTLQGHEYVANEEYDKALDAYRSGINADSRHYNAWYGLGTVYDKMGKLDF 667
Query: 253 SLECFHKLQAIVPS 266
+ + F I PS
Sbjct: 668 AEQHFRNAAKINPS 681
>sp|P56311|YCF3_CHLVU Photosystem I assembly protein ycf3 OS=Chlorella vulgaris GN=ycf3
PE=3 SV=1
Length = 167
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G A A ++Y + L A D LYN+GL H +++ +L+ +++ PS
Sbjct: 49 GEYAEALQNYYEALRLETDAYDRSYI----LYNIGLIHTSNGDHARALDYYYQALERNPS 104
Query: 267 MPEVLYQIASLYEITGDVEQA 287
+P+ L IA +Y G EQA
Sbjct: 105 LPQALNNIAVIYHYRG--EQA 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,088,700
Number of Sequences: 539616
Number of extensions: 5085045
Number of successful extensions: 16278
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 15834
Number of HSP's gapped (non-prelim): 548
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)