Query psy1863
Match_columns 425
No_of_seqs 669 out of 4805
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2003|consensus 100.0 6.5E-45 1.4E-49 321.5 33.5 414 1-419 135-720 (840)
2 KOG4626|consensus 100.0 2.5E-33 5.5E-38 256.5 24.6 350 8-391 109-492 (966)
3 KOG4626|consensus 100.0 4.3E-32 9.4E-37 248.5 26.4 387 17-423 50-487 (966)
4 TIGR00990 3a0801s09 mitochondr 100.0 9.3E-27 2E-31 233.0 36.6 245 148-393 307-580 (615)
5 TIGR02917 PEP_TPR_lipo putativ 99.9 1.6E-23 3.4E-28 220.0 38.3 382 15-421 22-426 (899)
6 TIGR02917 PEP_TPR_lipo putativ 99.9 1.9E-23 4.1E-28 219.4 38.6 202 135-337 465-676 (899)
7 PRK15174 Vi polysaccharide exp 99.9 1.5E-23 3.2E-28 209.5 33.9 319 16-388 43-385 (656)
8 PRK11447 cellulose synthase su 99.9 2.1E-23 4.4E-28 222.0 36.7 360 22-420 276-739 (1157)
9 TIGR00990 3a0801s09 mitochondr 99.9 5E-23 1.1E-27 206.2 34.6 284 136-423 161-573 (615)
10 PRK11447 cellulose synthase su 99.9 7.6E-23 1.7E-27 217.6 37.7 278 140-421 274-666 (1157)
11 KOG0547|consensus 99.9 1E-23 2.2E-28 189.0 25.7 237 135-397 326-579 (606)
12 PRK15174 Vi polysaccharide exp 99.9 1.8E-22 4E-27 201.7 33.6 319 11-398 72-417 (656)
13 KOG1126|consensus 99.9 9.6E-24 2.1E-28 196.4 21.9 229 136-390 354-626 (638)
14 KOG2002|consensus 99.9 1.1E-21 2.3E-26 189.4 30.5 403 11-423 160-747 (1018)
15 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.5E-25 179.5 35.0 220 139-385 73-312 (389)
16 KOG1126|consensus 99.9 1.4E-21 3E-26 182.2 22.6 288 13-331 317-626 (638)
17 PRK09782 bacteriophage N4 rece 99.9 2.3E-19 4.9E-24 183.8 35.2 198 138-337 512-718 (987)
18 PRK11788 tetratricopeptide rep 99.9 1.8E-19 3.9E-24 171.3 29.8 256 139-423 39-313 (389)
19 KOG1155|consensus 99.9 3.8E-19 8.3E-24 159.0 27.9 224 139-381 266-533 (559)
20 PRK09782 bacteriophage N4 rece 99.9 3.3E-19 7.1E-24 182.7 28.9 197 138-337 545-751 (987)
21 KOG2002|consensus 99.9 3E-18 6.6E-23 165.8 31.8 285 138-423 167-527 (1018)
22 COG3063 PilF Tfp pilus assembl 99.8 6.3E-19 1.4E-23 144.5 23.0 201 131-332 31-243 (250)
23 KOG1173|consensus 99.8 3.7E-18 7.9E-23 156.4 28.5 192 134-327 243-445 (611)
24 TIGR02521 type_IV_pilW type IV 99.8 2.4E-18 5.3E-23 151.0 26.7 194 132-326 28-233 (234)
25 PRK11189 lipoprotein NlpI; Pro 99.8 2.8E-18 6E-23 155.5 27.1 218 148-386 39-267 (296)
26 PRK10049 pgaA outer membrane p 99.8 9.9E-18 2.1E-22 171.3 34.1 349 18-424 18-459 (765)
27 PRK12370 invasion protein regu 99.8 4.4E-18 9.6E-23 167.6 28.0 195 138-333 261-478 (553)
28 KOG0547|consensus 99.8 1.7E-18 3.8E-23 155.7 21.4 380 12-421 112-566 (606)
29 KOG1173|consensus 99.8 4.6E-18 9.9E-23 155.8 23.4 280 4-337 233-530 (611)
30 COG3063 PilF Tfp pilus assembl 99.8 9.2E-18 2E-22 137.7 22.5 197 166-388 35-240 (250)
31 PRK10049 pgaA outer membrane p 99.8 5.2E-17 1.1E-21 166.0 33.1 323 17-393 51-465 (765)
32 KOG1155|consensus 99.8 1.1E-17 2.4E-22 149.7 24.0 157 141-298 336-495 (559)
33 TIGR02521 type_IV_pilW type IV 99.8 2.7E-17 5.9E-22 144.3 26.1 195 163-383 28-231 (234)
34 PF13429 TPR_15: Tetratricopep 99.8 7.6E-19 1.6E-23 158.9 14.2 253 139-422 12-278 (280)
35 KOG1129|consensus 99.8 8.7E-18 1.9E-22 144.1 19.1 225 138-388 226-462 (478)
36 PRK12370 invasion protein regu 99.8 1.2E-16 2.7E-21 157.5 29.8 190 135-325 295-502 (553)
37 KOG1125|consensus 99.8 1.3E-17 2.9E-22 153.4 18.7 223 139-387 289-530 (579)
38 KOG1840|consensus 99.8 5.2E-17 1.1E-21 153.2 22.7 233 132-383 196-478 (508)
39 PRK11189 lipoprotein NlpI; Pro 99.8 3E-16 6.4E-21 142.3 24.8 193 134-330 63-270 (296)
40 KOG1174|consensus 99.8 7E-16 1.5E-20 136.4 25.6 267 135-402 232-518 (564)
41 PF13429 TPR_15: Tetratricopep 99.8 7.9E-18 1.7E-22 152.2 13.8 152 142-293 117-273 (280)
42 KOG0624|consensus 99.8 3E-15 6.5E-20 129.5 28.6 247 140-387 77-373 (504)
43 KOG0550|consensus 99.8 3.1E-16 6.8E-21 138.7 22.2 278 15-301 49-353 (486)
44 KOG2003|consensus 99.7 6.5E-16 1.4E-20 138.2 21.7 196 138-334 493-698 (840)
45 KOG0624|consensus 99.7 7.4E-15 1.6E-19 127.1 27.2 286 134-423 37-372 (504)
46 KOG0495|consensus 99.7 9E-15 1.9E-19 136.3 28.9 281 133-418 582-877 (913)
47 TIGR03302 OM_YfiO outer membra 99.7 6.9E-16 1.5E-20 135.9 21.0 169 131-300 29-234 (235)
48 KOG0548|consensus 99.7 3.5E-15 7.6E-20 136.5 25.7 328 15-396 2-467 (539)
49 TIGR00540 hemY_coli hemY prote 99.7 3E-14 6.5E-19 135.5 33.1 256 139-422 122-400 (409)
50 KOG2076|consensus 99.7 4.6E-15 9.9E-20 143.2 27.2 294 11-382 135-510 (895)
51 PRK15359 type III secretion sy 99.7 4.2E-16 9.2E-21 125.2 16.5 125 156-280 14-138 (144)
52 KOG1129|consensus 99.7 1.2E-15 2.7E-20 131.1 19.5 255 143-424 187-461 (478)
53 KOG2076|consensus 99.7 1.3E-14 2.8E-19 140.1 28.5 189 135-324 139-344 (895)
54 PLN02789 farnesyltranstransfer 99.7 8.7E-15 1.9E-19 132.5 25.8 189 144-333 46-258 (320)
55 KOG1174|consensus 99.7 2.5E-15 5.4E-20 133.0 21.1 270 13-335 230-510 (564)
56 KOG1840|consensus 99.7 1.2E-15 2.5E-20 144.1 20.3 249 12-297 196-478 (508)
57 PRK10747 putative protoheme IX 99.7 2.4E-14 5.2E-19 135.5 29.5 254 139-422 88-391 (398)
58 PRK15359 type III secretion sy 99.7 7.3E-16 1.6E-20 123.8 14.9 121 186-310 13-135 (144)
59 KOG1125|consensus 99.7 1.8E-15 3.8E-20 139.6 17.9 230 19-301 289-530 (579)
60 PRK14574 hmsH outer membrane p 99.7 1.6E-13 3.4E-18 138.6 33.6 277 142-423 75-398 (822)
61 PLN02789 farnesyltranstransfer 99.7 1.7E-14 3.6E-19 130.6 23.9 171 166-337 37-224 (320)
62 TIGR00540 hemY_coli hemY prote 99.7 1.1E-13 2.4E-18 131.6 30.3 259 138-421 87-366 (409)
63 TIGR03302 OM_YfiO outer membra 99.7 9E-15 1.9E-19 128.8 20.1 164 163-327 30-234 (235)
64 PRK10370 formate-dependent nit 99.7 1.1E-14 2.4E-19 123.3 19.1 153 141-303 22-178 (198)
65 PRK10747 putative protoheme IX 99.7 5.2E-13 1.1E-17 126.4 32.1 216 139-384 157-390 (398)
66 KOG0548|consensus 99.7 2.2E-14 4.7E-19 131.4 21.3 237 13-303 222-460 (539)
67 KOG4162|consensus 99.7 3.1E-13 6.8E-18 128.6 29.4 311 17-389 395-788 (799)
68 COG2956 Predicted N-acetylgluc 99.7 1.5E-12 3.2E-17 112.3 30.4 209 117-329 54-282 (389)
69 cd05804 StaR_like StaR_like; a 99.6 4.2E-13 9.1E-18 126.0 28.4 163 136-300 44-217 (355)
70 COG2956 Predicted N-acetylgluc 99.6 1.9E-13 4.1E-18 117.7 22.6 264 19-332 39-318 (389)
71 PRK14574 hmsH outer membrane p 99.6 5.1E-13 1.1E-17 134.9 29.5 279 134-420 33-355 (822)
72 PLN03081 pentatricopeptide (PP 99.6 5E-13 1.1E-17 136.2 29.4 276 137-420 261-556 (697)
73 PLN03218 maturation of RBCL 1; 99.6 1.5E-11 3.2E-16 127.8 35.6 282 135-420 472-782 (1060)
74 TIGR02552 LcrH_SycD type III s 99.6 5.7E-14 1.2E-18 112.3 14.1 116 187-303 4-119 (135)
75 PRK10370 formate-dependent nit 99.6 1.2E-13 2.5E-18 117.1 16.6 122 148-269 52-179 (198)
76 PRK15179 Vi polysaccharide bio 99.6 2E-13 4.4E-18 135.3 20.9 154 148-303 69-222 (694)
77 KOG3060|consensus 99.6 1.5E-12 3.3E-17 108.5 22.0 173 163-336 49-231 (289)
78 KOG0495|consensus 99.6 9.3E-12 2E-16 116.6 29.1 252 134-386 617-882 (913)
79 KOG0550|consensus 99.6 1.2E-13 2.6E-18 122.5 15.6 249 138-387 52-353 (486)
80 COG5010 TadD Flp pilus assembl 99.5 9.5E-13 2.1E-17 110.8 19.1 155 139-293 70-227 (257)
81 KOG3060|consensus 99.5 7.2E-12 1.6E-16 104.6 24.0 168 135-303 52-225 (289)
82 KOG0553|consensus 99.5 2.1E-13 4.7E-18 116.8 14.3 119 167-285 82-200 (304)
83 cd05804 StaR_like StaR_like; a 99.5 2.4E-11 5.3E-16 114.0 29.1 283 138-422 9-337 (355)
84 KOG4162|consensus 99.5 1.9E-12 4.2E-17 123.4 21.3 265 18-303 481-788 (799)
85 COG5010 TadD Flp pilus assembl 99.5 2.6E-12 5.7E-17 108.2 19.8 166 153-320 52-226 (257)
86 TIGR02552 LcrH_SycD type III s 99.5 6.3E-13 1.4E-17 106.2 15.7 115 157-271 5-122 (135)
87 PRK15363 pathogenicity island 99.5 6E-13 1.3E-17 104.8 14.3 102 163-264 32-133 (157)
88 PRK15363 pathogenicity island 99.5 9.3E-13 2E-17 103.7 15.1 111 192-303 26-137 (157)
89 KOG1156|consensus 99.5 5.7E-12 1.2E-16 118.0 22.5 239 138-400 10-261 (700)
90 KOG0553|consensus 99.5 2.9E-13 6.3E-18 116.0 12.8 109 201-310 82-192 (304)
91 PLN03081 pentatricopeptide (PP 99.5 5.9E-11 1.3E-15 121.1 31.7 278 136-419 159-453 (697)
92 PLN03077 Protein ECB2; Provisi 99.5 2.9E-11 6.3E-16 126.3 29.3 279 135-420 323-617 (857)
93 PLN03077 Protein ECB2; Provisi 99.5 6.2E-11 1.3E-15 123.9 31.5 241 135-382 424-718 (857)
94 PRK14720 transcript cleavage f 99.5 2.1E-11 4.5E-16 122.1 25.0 229 130-389 26-257 (906)
95 PLN03218 maturation of RBCL 1; 99.5 4.9E-10 1.1E-14 116.7 35.5 279 136-420 438-747 (1060)
96 PF12569 NARP1: NMDA receptor- 99.5 1.3E-10 2.8E-15 111.5 29.0 232 135-385 4-335 (517)
97 KOG1127|consensus 99.5 7.7E-11 1.7E-15 115.3 26.9 246 134-381 561-949 (1238)
98 KOG1156|consensus 99.4 1.4E-11 2.9E-16 115.5 20.1 235 166-424 7-251 (700)
99 KOG1130|consensus 99.4 3.4E-12 7.4E-17 113.4 14.0 268 12-325 14-344 (639)
100 PRK14720 transcript cleavage f 99.4 4.9E-11 1.1E-15 119.5 23.8 234 112-383 45-305 (906)
101 PRK15179 Vi polysaccharide bio 99.4 1E-11 2.2E-16 123.4 19.0 138 135-272 86-226 (694)
102 PLN03088 SGT1, suppressor of 99.4 8.7E-12 1.9E-16 115.7 16.3 113 169-281 5-117 (356)
103 KOG1128|consensus 99.4 1.4E-10 3.1E-15 110.3 21.3 212 136-385 399-617 (777)
104 KOG3785|consensus 99.4 8E-11 1.7E-15 102.9 18.0 236 147-390 34-317 (557)
105 KOG1130|consensus 99.4 5.5E-12 1.2E-16 112.1 11.0 251 112-382 31-342 (639)
106 COG4783 Putative Zn-dependent 99.3 1.6E-10 3.5E-15 105.5 20.1 156 163-329 303-458 (484)
107 PF13525 YfiO: Outer membrane 99.3 2.2E-10 4.8E-15 97.9 19.9 155 134-288 4-198 (203)
108 KOG1127|consensus 99.3 1.3E-10 2.9E-15 113.7 19.5 181 149-330 472-664 (1238)
109 PLN03088 SGT1, suppressor of 99.3 5.5E-11 1.2E-15 110.4 15.2 107 203-310 5-113 (356)
110 TIGR02795 tol_pal_ybgF tol-pal 99.3 8.9E-11 1.9E-15 91.4 14.2 105 166-270 2-112 (119)
111 COG4783 Putative Zn-dependent 99.3 5.2E-10 1.1E-14 102.3 20.8 156 134-307 305-465 (484)
112 PRK10866 outer membrane biogen 99.3 9.1E-10 2E-14 96.3 20.6 160 134-293 31-237 (243)
113 PF04733 Coatomer_E: Coatomer 99.3 6.9E-11 1.5E-15 105.9 13.9 168 137-307 104-275 (290)
114 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.7E-10 3.6E-15 89.8 13.6 103 200-303 2-110 (119)
115 KOG2376|consensus 99.3 3.2E-08 7E-13 92.4 30.3 130 139-268 83-258 (652)
116 COG3071 HemY Uncharacterized e 99.3 4.4E-08 9.5E-13 87.5 29.9 128 136-263 85-216 (400)
117 cd00189 TPR Tetratricopeptide 99.3 1.6E-10 3.5E-15 85.5 12.4 98 168-265 2-99 (100)
118 COG4785 NlpI Lipoprotein NlpI, 99.2 6.1E-10 1.3E-14 91.0 16.2 179 203-382 68-264 (297)
119 KOG1128|consensus 99.2 1.5E-10 3.1E-15 110.2 14.5 183 137-326 426-617 (777)
120 PRK02603 photosystem I assembl 99.2 3.2E-10 6.9E-15 94.4 15.2 120 163-303 32-154 (172)
121 PF13414 TPR_11: TPR repeat; P 99.2 5E-11 1.1E-15 82.8 8.6 66 200-265 3-69 (69)
122 CHL00033 ycf3 photosystem I as 99.2 3.6E-10 7.8E-15 93.8 14.9 83 163-245 32-117 (168)
123 cd00189 TPR Tetratricopeptide 99.2 2.3E-10 5E-15 84.6 12.2 99 202-301 2-100 (100)
124 KOG1915|consensus 99.2 2.4E-07 5.2E-12 84.5 32.8 277 82-390 49-357 (677)
125 PF14938 SNAP: Soluble NSF att 99.2 2.9E-10 6.4E-15 102.4 14.6 169 133-303 33-230 (282)
126 CHL00033 ycf3 photosystem I as 99.2 3.6E-10 7.9E-15 93.7 14.0 115 179-293 12-138 (168)
127 PF13414 TPR_11: TPR repeat; P 99.2 5.7E-11 1.2E-15 82.5 7.7 67 165-231 2-69 (69)
128 PRK02603 photosystem I assembl 99.2 4.5E-10 9.8E-15 93.5 13.1 120 197-330 32-154 (172)
129 PRK10866 outer membrane biogen 99.2 7.4E-09 1.6E-13 90.6 21.2 140 163-303 29-209 (243)
130 COG3071 HemY Uncharacterized e 99.2 1.3E-07 2.9E-12 84.5 28.9 185 138-326 156-391 (400)
131 PF09976 TPR_21: Tetratricopep 99.2 2.6E-09 5.7E-14 86.1 16.8 116 178-295 23-144 (145)
132 COG4235 Cytochrome c biogenesi 99.2 1.1E-09 2.5E-14 94.9 15.2 122 181-303 137-261 (287)
133 PF13525 YfiO: Outer membrane 99.2 2.6E-09 5.6E-14 91.3 16.9 138 165-303 4-175 (203)
134 KOG3785|consensus 99.2 1.9E-08 4.1E-13 88.3 22.0 147 135-281 57-232 (557)
135 PF12895 Apc3: Anaphase-promot 99.2 1.6E-10 3.4E-15 83.7 7.7 80 179-259 2-83 (84)
136 PF04733 Coatomer_E: Coatomer 99.1 2.1E-09 4.5E-14 96.4 16.2 185 140-330 71-270 (290)
137 PRK15331 chaperone protein Sic 99.1 2.6E-09 5.6E-14 84.8 14.7 103 163-266 34-136 (165)
138 KOG2376|consensus 99.1 2E-08 4.4E-13 93.7 22.8 230 142-390 19-259 (652)
139 KOG1941|consensus 99.1 2.7E-08 5.9E-13 87.6 22.2 164 135-299 83-276 (518)
140 KOG0543|consensus 99.1 1.5E-09 3.3E-14 97.4 14.6 123 171-293 213-351 (397)
141 PRK10153 DNA-binding transcrip 99.1 6.5E-09 1.4E-13 100.6 20.2 139 163-303 334-487 (517)
142 KOG0543|consensus 99.1 1.6E-09 3.5E-14 97.2 14.7 128 138-265 211-357 (397)
143 PRK15331 chaperone protein Sic 99.1 1.2E-09 2.6E-14 86.6 12.3 107 195-303 32-138 (165)
144 PF14938 SNAP: Soluble NSF att 99.1 1.1E-08 2.3E-13 92.4 19.9 164 134-299 74-267 (282)
145 PF12569 NARP1: NMDA receptor- 99.1 4.3E-08 9.4E-13 94.3 25.0 221 165-385 3-292 (517)
146 PF09976 TPR_21: Tetratricopep 99.1 4.5E-09 9.8E-14 84.7 15.6 121 140-261 16-145 (145)
147 PF13432 TPR_16: Tetratricopep 99.1 5E-10 1.1E-14 76.7 8.3 62 206-267 3-64 (65)
148 PF12895 Apc3: Anaphase-promot 99.1 3E-10 6.5E-15 82.2 7.4 80 213-293 2-83 (84)
149 KOG2047|consensus 99.1 8E-07 1.7E-11 84.1 31.0 195 143-338 355-592 (835)
150 COG4235 Cytochrome c biogenesi 99.1 4.2E-09 9.2E-14 91.4 15.0 106 163-268 153-261 (287)
151 PF13432 TPR_16: Tetratricopep 99.1 5.9E-10 1.3E-14 76.3 7.7 65 170-234 1-65 (65)
152 PRK10803 tol-pal system protei 99.1 8.9E-09 1.9E-13 90.7 16.3 105 166-270 142-253 (263)
153 PRK04841 transcriptional regul 99.1 1.9E-07 4.2E-12 98.8 29.3 286 137-423 411-762 (903)
154 PRK10803 tol-pal system protei 99.0 1.1E-08 2.4E-13 90.1 15.6 104 199-303 141-251 (263)
155 PF12688 TPR_5: Tetratrico pep 99.0 1.2E-08 2.7E-13 78.0 13.8 96 167-262 2-103 (120)
156 PRK11906 transcriptional regul 99.0 2.2E-08 4.7E-13 92.3 17.5 134 169-303 258-406 (458)
157 PRK11906 transcriptional regul 99.0 3.9E-08 8.3E-13 90.7 18.8 155 139-293 259-432 (458)
158 PRK10153 DNA-binding transcrip 99.0 2.9E-08 6.2E-13 96.2 18.6 132 137-269 341-488 (517)
159 KOG4340|consensus 99.0 1.9E-08 4.2E-13 86.3 15.1 152 146-298 21-207 (459)
160 PRK04841 transcriptional regul 99.0 1.4E-06 3E-11 92.3 31.9 31 356-386 732-762 (903)
161 COG4105 ComL DNA uptake lipopr 99.0 2.1E-07 4.5E-12 79.3 19.9 171 132-303 31-238 (254)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 2.8E-08 6.1E-13 92.1 15.4 120 171-293 174-293 (395)
163 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 7.3E-08 1.6E-12 89.3 16.6 120 141-260 175-294 (395)
164 KOG4340|consensus 98.9 5.2E-07 1.1E-11 77.7 20.1 207 138-348 47-328 (459)
165 PF12688 TPR_5: Tetratrico pep 98.9 4.5E-08 9.6E-13 74.9 12.3 92 137-228 3-103 (120)
166 KOG1915|consensus 98.9 6.5E-05 1.4E-09 69.1 36.6 283 138-422 177-537 (677)
167 KOG4234|consensus 98.9 4.6E-08 1E-12 79.1 12.2 109 168-276 97-210 (271)
168 PF14559 TPR_19: Tetratricopep 98.9 1.1E-08 2.3E-13 70.8 7.3 64 178-241 3-66 (68)
169 PF14559 TPR_19: Tetratricopep 98.8 1.1E-08 2.3E-13 70.8 6.9 66 211-276 2-67 (68)
170 PF13512 TPR_18: Tetratricopep 98.8 1.8E-07 3.9E-12 72.7 13.6 65 168-232 12-79 (142)
171 PF13371 TPR_9: Tetratricopept 98.8 2.9E-08 6.2E-13 69.7 8.5 64 208-271 3-66 (73)
172 PF13512 TPR_18: Tetratricopep 98.8 1.4E-07 3.1E-12 73.3 12.8 84 132-215 7-99 (142)
173 KOG4234|consensus 98.8 6.2E-08 1.3E-12 78.4 10.6 100 203-303 98-202 (271)
174 PF13371 TPR_9: Tetratricopept 98.8 4.1E-08 8.9E-13 68.9 8.5 70 172-241 1-70 (73)
175 KOG2047|consensus 98.8 1.2E-05 2.7E-10 76.3 26.7 251 132-386 384-689 (835)
176 KOG4648|consensus 98.8 4.2E-08 9.1E-13 85.8 9.3 102 140-241 102-206 (536)
177 COG1729 Uncharacterized protei 98.8 3.6E-07 7.7E-12 78.6 14.7 103 169-271 144-252 (262)
178 KOG1941|consensus 98.8 9.2E-07 2E-11 78.2 17.2 235 139-393 10-284 (518)
179 COG4785 NlpI Lipoprotein NlpI, 98.7 7.2E-07 1.6E-11 73.3 15.3 136 163-299 62-197 (297)
180 COG0457 NrfG FOG: TPR repeat [ 98.7 9.7E-06 2.1E-10 70.4 24.2 192 136-328 60-268 (291)
181 KOG4648|consensus 98.7 3.9E-08 8.6E-13 86.0 8.0 100 170-269 101-200 (536)
182 KOG4555|consensus 98.7 6.3E-07 1.4E-11 67.4 12.9 93 172-264 49-145 (175)
183 COG1729 Uncharacterized protei 98.7 3.3E-07 7.2E-12 78.8 13.0 100 203-303 144-249 (262)
184 PF13424 TPR_12: Tetratricopep 98.7 2.7E-08 5.8E-13 70.9 5.2 61 202-262 7-74 (78)
185 KOG3081|consensus 98.7 8.3E-06 1.8E-10 69.4 20.2 160 139-303 112-276 (299)
186 COG0457 NrfG FOG: TPR repeat [ 98.7 3.3E-05 7.2E-10 67.0 25.6 214 148-387 36-268 (291)
187 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.2E-07 2.6E-12 87.5 9.8 67 163-229 72-141 (453)
188 KOG3081|consensus 98.7 1.4E-05 2.9E-10 68.2 20.9 156 167-330 109-276 (299)
189 KOG2796|consensus 98.7 3E-06 6.4E-11 71.9 16.9 137 166-303 177-320 (366)
190 PF13424 TPR_12: Tetratricopep 98.6 7.2E-08 1.6E-12 68.6 5.9 67 163-229 2-75 (78)
191 KOG4555|consensus 98.6 2.7E-06 5.9E-11 64.1 13.9 90 141-230 49-145 (175)
192 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.2E-07 4.7E-12 85.7 9.9 70 195-264 70-142 (453)
193 KOG1586|consensus 98.6 1.5E-05 3.2E-10 66.5 18.5 168 134-303 33-229 (288)
194 KOG3617|consensus 98.6 4.1E-05 8.8E-10 74.8 24.1 27 355-381 1145-1171(1416)
195 KOG1586|consensus 98.6 2.8E-05 6.1E-10 64.9 19.5 126 249-393 88-233 (288)
196 PF06552 TOM20_plant: Plant sp 98.6 1.6E-06 3.4E-11 69.7 11.9 86 217-303 8-114 (186)
197 PF06552 TOM20_plant: Plant sp 98.5 1.4E-06 3.1E-11 70.0 11.4 94 182-275 7-121 (186)
198 COG4700 Uncharacterized protei 98.5 2.5E-05 5.4E-10 62.9 18.3 128 165-293 88-218 (251)
199 KOG2053|consensus 98.5 2.9E-05 6.3E-10 76.5 22.5 124 178-303 21-144 (932)
200 COG4105 ComL DNA uptake lipopr 98.5 3.2E-05 6.9E-10 66.2 19.9 81 199-279 33-119 (254)
201 KOG1070|consensus 98.5 3.4E-05 7.3E-10 79.4 21.1 189 136-326 1459-1664(1710)
202 COG4700 Uncharacterized protei 98.4 0.00016 3.4E-09 58.4 19.8 130 172-303 62-194 (251)
203 KOG2796|consensus 98.4 1.2E-05 2.5E-10 68.3 13.4 143 136-278 178-333 (366)
204 KOG3617|consensus 98.4 0.00016 3.4E-09 70.9 22.6 235 139-381 804-1106(1416)
205 KOG2471|consensus 98.4 2.5E-05 5.4E-10 71.9 16.4 111 135-245 240-380 (696)
206 KOG4642|consensus 98.4 7.7E-07 1.7E-11 74.2 6.2 87 207-293 17-103 (284)
207 KOG4642|consensus 98.4 1.2E-06 2.6E-11 73.1 7.0 93 171-263 15-107 (284)
208 KOG1070|consensus 98.3 0.00016 3.4E-09 74.8 20.8 176 123-299 1483-1664(1710)
209 PF05843 Suf: Suppressor of fo 98.2 4.5E-05 9.8E-10 68.6 14.3 135 168-303 3-141 (280)
210 KOG1585|consensus 98.2 0.00037 8E-09 58.8 18.3 165 133-298 29-219 (308)
211 PF13428 TPR_14: Tetratricopep 98.2 4.7E-06 1E-10 51.6 5.3 40 168-207 3-42 (44)
212 PF13428 TPR_14: Tetratricopep 98.2 5E-06 1.1E-10 51.5 5.2 40 236-275 3-42 (44)
213 KOG2053|consensus 98.2 0.0018 3.9E-08 64.4 24.7 215 111-329 22-259 (932)
214 KOG0545|consensus 98.1 3.4E-05 7.5E-10 64.8 10.8 103 167-269 179-299 (329)
215 KOG0376|consensus 98.1 4.1E-06 8.8E-11 77.3 5.9 107 171-277 9-115 (476)
216 KOG2610|consensus 98.1 0.00084 1.8E-08 59.4 19.4 152 142-293 110-272 (491)
217 PF04184 ST7: ST7 protein; In 98.1 0.00033 7.2E-09 65.3 17.5 162 168-332 170-382 (539)
218 KOG0545|consensus 98.1 4.3E-05 9.4E-10 64.3 10.6 102 135-236 178-300 (329)
219 PF13431 TPR_17: Tetratricopep 98.1 3.4E-06 7.3E-11 48.7 3.0 30 224-253 3-32 (34)
220 PF05843 Suf: Suppressor of fo 98.1 0.00014 3.1E-09 65.3 15.0 131 138-268 4-141 (280)
221 KOG0376|consensus 98.1 8.8E-06 1.9E-10 75.1 6.5 121 204-325 8-130 (476)
222 KOG1585|consensus 98.0 0.0032 7E-08 53.3 20.5 153 140-293 76-252 (308)
223 PF13431 TPR_17: Tetratricopep 98.0 5.9E-06 1.3E-10 47.7 3.0 33 188-220 1-33 (34)
224 KOG2471|consensus 97.9 7E-05 1.5E-09 69.1 9.9 141 140-280 211-381 (696)
225 KOG2610|consensus 97.9 0.00041 8.9E-09 61.3 13.8 121 173-293 110-234 (491)
226 COG3898 Uncharacterized membra 97.9 0.018 3.8E-07 52.4 26.6 244 137-382 122-390 (531)
227 PF00515 TPR_1: Tetratricopept 97.9 2.9E-05 6.4E-10 44.9 4.4 30 236-265 3-32 (34)
228 PF00515 TPR_1: Tetratricopept 97.9 2.7E-05 5.8E-10 45.1 4.2 31 168-198 3-33 (34)
229 PF10300 DUF3808: Protein of u 97.9 0.0012 2.5E-08 63.9 17.5 104 181-284 248-356 (468)
230 PF13281 DUF4071: Domain of un 97.9 0.013 2.8E-07 54.1 23.1 167 164-331 139-340 (374)
231 PF07719 TPR_2: Tetratricopept 97.8 4.5E-05 9.8E-10 44.1 4.9 32 167-198 2-33 (34)
232 PF07719 TPR_2: Tetratricopept 97.8 5.3E-05 1.1E-09 43.8 5.1 31 236-266 3-33 (34)
233 KOG0551|consensus 97.8 0.00014 3.1E-09 64.0 9.6 100 166-265 81-184 (390)
234 PF13281 DUF4071: Domain of un 97.8 0.0026 5.6E-08 58.5 18.0 170 132-303 138-339 (374)
235 COG3898 Uncharacterized membra 97.8 0.014 3E-07 53.0 21.7 246 139-386 88-360 (531)
236 COG3118 Thioredoxin domain-con 97.8 0.0022 4.7E-08 56.1 16.3 156 136-292 135-296 (304)
237 KOG0551|consensus 97.7 0.00049 1.1E-08 60.7 11.4 101 202-303 83-187 (390)
238 PF03704 BTAD: Bacterial trans 97.7 0.0018 3.9E-08 52.1 14.0 111 173-297 13-124 (146)
239 KOG1550|consensus 97.7 0.018 3.9E-07 57.2 23.4 145 151-300 228-395 (552)
240 PF03704 BTAD: Bacterial trans 97.7 0.0022 4.7E-08 51.6 13.8 106 139-262 10-124 (146)
241 COG2976 Uncharacterized protei 97.6 0.0076 1.6E-07 49.5 15.9 117 184-303 70-193 (207)
242 PF04184 ST7: ST7 protein; In 97.6 0.0085 1.8E-07 56.3 18.0 158 143-303 176-380 (539)
243 KOG3616|consensus 97.6 0.051 1.1E-06 53.4 23.3 139 137-293 767-907 (1636)
244 COG3118 Thioredoxin domain-con 97.6 0.0047 1E-07 54.1 14.9 142 157-300 125-267 (304)
245 PF08631 SPO22: Meiosis protei 97.6 0.056 1.2E-06 48.6 23.3 23 359-381 250-272 (278)
246 PF02259 FAT: FAT domain; Int 97.5 0.081 1.8E-06 49.4 24.9 165 133-303 144-343 (352)
247 PF10300 DUF3808: Protein of u 97.5 0.0017 3.7E-08 62.8 12.5 115 148-262 246-375 (468)
248 COG2976 Uncharacterized protei 97.5 0.015 3.2E-07 47.8 15.7 95 170-265 93-190 (207)
249 KOG1308|consensus 97.5 0.00012 2.6E-09 64.8 4.0 93 173-265 121-213 (377)
250 COG0790 FOG: TPR repeat, SEL1 97.4 0.029 6.2E-07 51.0 19.0 139 139-282 77-236 (292)
251 PF13181 TPR_8: Tetratricopept 97.3 0.00039 8.4E-09 40.1 4.0 30 168-197 3-32 (34)
252 KOG1914|consensus 97.3 0.16 3.5E-06 48.4 27.2 302 8-327 178-503 (656)
253 KOG1308|consensus 97.3 9.4E-05 2E-09 65.4 1.6 94 209-303 123-216 (377)
254 PF13181 TPR_8: Tetratricopept 97.3 0.00053 1.2E-08 39.5 4.3 29 237-265 4-32 (34)
255 PF04910 Tcf25: Transcriptiona 97.1 0.052 1.1E-06 50.6 17.7 154 148-303 23-227 (360)
256 KOG1258|consensus 97.1 0.14 3E-06 49.4 20.2 190 144-334 264-479 (577)
257 PF08424 NRDE-2: NRDE-2, neces 97.1 0.045 9.7E-07 50.4 16.5 131 251-389 48-188 (321)
258 KOG4507|consensus 97.0 0.0029 6.2E-08 60.1 7.9 92 211-303 618-710 (886)
259 PF13174 TPR_6: Tetratricopept 97.0 0.0016 3.4E-08 37.1 4.1 25 206-230 6-30 (33)
260 PF13174 TPR_6: Tetratricopept 97.0 0.0015 3.2E-08 37.2 3.9 33 167-199 1-33 (33)
261 COG0790 FOG: TPR repeat, SEL1 97.0 0.29 6.2E-06 44.4 22.4 161 143-308 49-230 (292)
262 PF13176 TPR_7: Tetratricopept 96.9 0.002 4.4E-08 37.6 4.3 26 237-262 2-27 (36)
263 KOG0985|consensus 96.9 0.45 9.8E-06 48.9 22.6 176 135-321 1104-1337(1666)
264 PF13176 TPR_7: Tetratricopept 96.9 0.0017 3.7E-08 37.9 3.9 28 202-229 1-28 (36)
265 KOG0985|consensus 96.9 0.42 9E-06 49.2 22.1 84 141-229 1054-1162(1666)
266 COG2909 MalT ATP-dependent tra 96.9 0.64 1.4E-05 47.2 25.5 162 132-298 344-526 (894)
267 KOG0530|consensus 96.9 0.12 2.6E-06 44.6 15.8 159 177-336 54-227 (318)
268 COG2909 MalT ATP-dependent tra 96.8 0.49 1.1E-05 48.0 22.1 194 135-329 415-651 (894)
269 PF09613 HrpB1_HrpK: Bacterial 96.8 0.033 7.2E-07 44.5 11.5 73 177-249 21-93 (160)
270 PF04781 DUF627: Protein of un 96.8 0.021 4.5E-07 42.4 9.5 91 173-263 3-107 (111)
271 KOG2300|consensus 96.8 0.48 1E-05 44.7 21.6 178 146-327 286-516 (629)
272 KOG1839|consensus 96.8 0.015 3.2E-07 60.8 11.7 162 136-298 933-1128(1236)
273 KOG2300|consensus 96.7 0.12 2.5E-06 48.6 15.9 125 166-293 367-510 (629)
274 PF02259 FAT: FAT domain; Int 96.7 0.1 2.2E-06 48.8 16.5 161 163-329 143-342 (352)
275 PF09613 HrpB1_HrpK: Bacterial 96.7 0.041 8.9E-07 44.0 11.4 85 201-285 11-95 (160)
276 KOG1550|consensus 96.7 0.1 2.2E-06 51.9 16.9 142 181-327 227-395 (552)
277 PF04910 Tcf25: Transcriptiona 96.7 0.14 3E-06 47.8 16.7 137 132-268 37-227 (360)
278 KOG3824|consensus 96.7 0.0085 1.8E-07 52.6 7.7 73 171-243 121-193 (472)
279 PF14561 TPR_20: Tetratricopep 96.7 0.025 5.4E-07 41.0 9.0 66 220-285 8-75 (90)
280 PRK10941 hypothetical protein; 96.6 0.03 6.4E-07 49.7 11.2 70 203-272 184-253 (269)
281 KOG3824|consensus 96.6 0.0089 1.9E-07 52.5 7.6 71 206-276 122-192 (472)
282 KOG4507|consensus 96.6 0.0043 9.3E-08 59.0 6.0 101 178-278 619-720 (886)
283 PF08424 NRDE-2: NRDE-2, neces 96.6 0.2 4.4E-06 46.0 17.0 136 163-299 16-184 (321)
284 KOG2396|consensus 96.5 0.04 8.7E-07 51.8 11.7 84 155-238 91-178 (568)
285 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.022 4.8E-07 36.3 6.9 35 237-271 4-38 (53)
286 COG4649 Uncharacterized protei 96.4 0.4 8.7E-06 38.8 15.4 140 139-279 62-211 (221)
287 PRK10941 hypothetical protein; 96.4 0.029 6.3E-07 49.7 9.5 68 235-303 182-249 (269)
288 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.022 4.9E-07 36.3 6.4 36 168-203 3-38 (53)
289 KOG2396|consensus 96.3 0.14 3.1E-06 48.2 13.7 93 183-275 88-181 (568)
290 PF14561 TPR_20: Tetratricopep 96.3 0.064 1.4E-06 38.8 9.1 67 185-251 7-75 (90)
291 PF08631 SPO22: Meiosis protei 96.2 0.69 1.5E-05 41.6 17.8 91 203-293 38-146 (278)
292 PF04781 DUF627: Protein of un 96.2 0.064 1.4E-06 39.9 8.9 91 206-297 2-106 (111)
293 smart00028 TPR Tetratricopepti 96.2 0.01 2.2E-07 32.9 3.9 30 168-197 3-32 (34)
294 smart00028 TPR Tetratricopepti 96.2 0.0096 2.1E-07 33.0 3.7 26 238-263 5-30 (34)
295 KOG3364|consensus 96.1 0.11 2.3E-06 40.1 10.0 72 132-203 29-108 (149)
296 PF10602 RPN7: 26S proteasome 96.0 0.44 9.5E-06 39.6 14.1 101 164-264 34-143 (177)
297 PF09986 DUF2225: Uncharacteri 95.9 0.14 3.1E-06 43.8 11.3 43 148-190 90-142 (214)
298 PF12968 DUF3856: Domain of Un 95.9 0.19 4.1E-06 37.8 10.1 86 212-298 21-129 (144)
299 COG5159 RPN6 26S proteasome re 95.8 0.88 1.9E-05 40.0 15.5 95 135-229 125-235 (421)
300 TIGR02561 HrpB1_HrpK type III 95.8 0.16 3.5E-06 40.0 10.1 71 179-249 23-93 (153)
301 KOG4814|consensus 95.8 0.95 2E-05 44.3 17.1 90 204-293 358-453 (872)
302 PF12968 DUF3856: Domain of Un 95.8 0.57 1.2E-05 35.3 13.3 96 140-262 14-128 (144)
303 KOG1258|consensus 95.8 2.1 4.5E-05 41.7 22.3 162 141-303 303-475 (577)
304 PF09986 DUF2225: Uncharacteri 95.8 0.16 3.5E-06 43.5 11.1 87 179-265 90-196 (214)
305 TIGR02561 HrpB1_HrpK type III 95.7 0.21 4.5E-06 39.4 10.3 84 202-285 12-95 (153)
306 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.8 4E-05 40.6 23.7 169 132-301 299-498 (660)
307 PF10602 RPN7: 26S proteasome 95.6 0.31 6.8E-06 40.4 11.9 97 135-231 36-144 (177)
308 PRK15180 Vi polysaccharide bio 95.6 0.19 4.2E-06 47.1 11.3 126 177-303 300-425 (831)
309 KOG1310|consensus 95.5 0.055 1.2E-06 51.2 7.7 93 210-303 384-479 (758)
310 KOG3364|consensus 95.5 0.57 1.2E-05 36.2 11.6 74 199-272 31-109 (149)
311 KOG0530|consensus 95.4 0.3 6.6E-06 42.3 11.1 164 146-310 54-230 (318)
312 PF15015 NYD-SP12_N: Spermatog 95.2 0.43 9.2E-06 44.2 12.1 85 142-226 183-288 (569)
313 PF13374 TPR_10: Tetratricopep 95.2 0.054 1.2E-06 32.4 4.7 29 235-263 3-31 (42)
314 PF13374 TPR_10: Tetratricopep 95.2 0.042 9E-07 32.9 4.1 36 15-50 2-37 (42)
315 KOG1310|consensus 95.1 0.11 2.3E-06 49.4 8.1 104 163-266 371-477 (758)
316 KOG2422|consensus 95.1 3.3 7.1E-05 40.2 17.8 152 179-331 251-454 (665)
317 COG5191 Uncharacterized conser 95.0 0.067 1.5E-06 47.2 6.0 78 195-272 102-180 (435)
318 KOG1464|consensus 95.0 2.3 5E-05 37.2 16.1 112 118-229 128-260 (440)
319 COG4976 Predicted methyltransf 95.0 0.047 1E-06 46.1 4.9 55 178-232 7-61 (287)
320 KOG4014|consensus 94.9 1.5 3.2E-05 35.9 13.0 179 131-326 30-234 (248)
321 PRK15180 Vi polysaccharide bio 94.9 0.11 2.4E-06 48.7 7.5 122 145-266 299-423 (831)
322 COG4976 Predicted methyltransf 94.8 0.054 1.2E-06 45.7 4.9 58 210-267 5-62 (287)
323 COG3914 Spy Predicted O-linked 94.8 0.68 1.5E-05 44.8 12.6 139 146-284 41-192 (620)
324 PF10345 Cohesin_load: Cohesin 94.7 5.6 0.00012 40.4 29.4 161 132-293 56-250 (608)
325 KOG4814|consensus 94.7 1.2 2.5E-05 43.7 13.8 95 170-264 358-458 (872)
326 KOG3807|consensus 94.5 3.5 7.5E-05 37.2 16.3 122 168-291 186-334 (556)
327 COG3914 Spy Predicted O-linked 94.4 2.4 5.2E-05 41.2 15.3 100 143-242 75-184 (620)
328 KOG2581|consensus 94.4 0.95 2.1E-05 41.8 12.0 129 140-268 131-281 (493)
329 KOG2041|consensus 94.4 6.1 0.00013 39.4 18.0 137 140-293 739-877 (1189)
330 KOG2041|consensus 94.2 6.8 0.00015 39.1 22.1 140 135-293 796-935 (1189)
331 KOG1463|consensus 94.1 4.3 9.4E-05 36.8 19.1 26 18-43 7-32 (411)
332 PRK13184 pknD serine/threonine 94.1 0.79 1.7E-05 48.0 12.4 127 205-333 480-628 (932)
333 PF04053 Coatomer_WDAD: Coatom 94.0 3.4 7.4E-05 39.8 15.7 132 142-298 268-402 (443)
334 KOG2422|consensus 93.9 5.2 0.00011 38.9 16.3 152 149-302 252-452 (665)
335 COG4649 Uncharacterized protei 93.7 3.2 7E-05 33.8 14.0 111 134-245 93-211 (221)
336 COG5107 RNA14 Pre-mRNA 3'-end 93.7 6.5 0.00014 37.2 19.4 165 158-326 291-496 (660)
337 KOG0890|consensus 93.4 19 0.0004 41.5 24.9 107 199-308 1669-1796(2382)
338 KOG1839|consensus 93.3 1 2.2E-05 47.9 11.5 130 134-263 972-1128(1236)
339 COG5191 Uncharacterized conser 93.2 0.19 4.1E-06 44.5 5.3 80 223-303 96-176 (435)
340 PF15015 NYD-SP12_N: Spermatog 93.2 0.58 1.3E-05 43.3 8.5 92 169-260 179-288 (569)
341 KOG1914|consensus 93.2 8.8 0.00019 37.2 24.7 66 163-229 17-82 (656)
342 COG3629 DnrI DNA-binding trans 93.2 0.95 2.1E-05 40.2 9.7 79 151-229 137-216 (280)
343 KOG3783|consensus 93.2 8.8 0.00019 37.2 18.3 70 138-207 270-344 (546)
344 PF12862 Apc5: Anaphase-promot 93.1 0.53 1.2E-05 34.4 7.0 53 177-229 9-70 (94)
345 COG2912 Uncharacterized conser 93.1 0.94 2E-05 39.7 9.3 64 207-270 188-251 (269)
346 PF12862 Apc5: Anaphase-promot 93.0 0.47 1E-05 34.6 6.6 56 210-265 8-72 (94)
347 COG5159 RPN6 26S proteasome re 92.9 6.3 0.00014 34.9 15.8 188 139-327 7-237 (421)
348 PF07720 TPR_3: Tetratricopept 92.9 0.42 9E-06 27.7 4.8 21 168-188 3-23 (36)
349 KOG3616|consensus 92.7 12 0.00026 37.7 26.8 57 342-400 1312-1368(1636)
350 PRK13184 pknD serine/threonine 92.7 1.5 3.2E-05 46.1 11.8 98 172-270 481-588 (932)
351 PF07721 TPR_4: Tetratricopept 92.7 0.19 4E-06 26.7 3.0 20 169-188 4-23 (26)
352 PF11207 DUF2989: Protein of u 92.6 5.5 0.00012 33.4 13.7 54 199-253 140-197 (203)
353 PF07079 DUF1347: Protein of u 92.1 11 0.00024 35.8 18.7 125 139-263 10-157 (549)
354 PF07720 TPR_3: Tetratricopept 91.9 0.63 1.4E-05 27.0 4.7 20 203-222 4-23 (36)
355 cd02681 MIT_calpain7_1 MIT: do 91.5 0.44 9.5E-06 33.1 4.4 35 11-45 2-36 (76)
356 PF10373 EST1_DNA_bind: Est1 D 91.4 0.82 1.8E-05 41.0 7.6 62 185-246 1-62 (278)
357 COG3629 DnrI DNA-binding trans 91.4 1.4 3.1E-05 39.1 8.6 63 234-297 153-215 (280)
358 COG2912 Uncharacterized conser 91.3 1.7 3.8E-05 38.1 8.9 74 167-240 182-255 (269)
359 PF10579 Rapsyn_N: Rapsyn N-te 91.1 2.7 5.8E-05 29.2 7.9 54 240-293 12-68 (80)
360 PF10373 EST1_DNA_bind: Est1 D 91.0 0.98 2.1E-05 40.5 7.7 62 219-280 1-62 (278)
361 PF07721 TPR_4: Tetratricopept 90.7 0.47 1E-05 25.1 3.2 22 236-257 3-24 (26)
362 PF07079 DUF1347: Protein of u 90.7 16 0.00034 34.8 23.1 31 163-193 76-106 (549)
363 KOG1538|consensus 90.7 8.5 0.00018 38.1 13.5 51 207-260 780-830 (1081)
364 PF11207 DUF2989: Protein of u 90.6 4.1 8.9E-05 34.2 10.1 55 232-287 139-197 (203)
365 PF04190 DUF410: Protein of un 90.6 12 0.00026 33.3 17.2 34 264-298 136-170 (260)
366 KOG1464|consensus 90.4 12 0.00026 32.9 16.7 180 148-328 40-263 (440)
367 KOG4014|consensus 90.2 9.4 0.0002 31.5 15.7 147 135-298 68-233 (248)
368 PF10255 Paf67: RNA polymerase 90.1 4.1 8.8E-05 38.4 10.8 55 139-193 126-191 (404)
369 PF10516 SHNi-TPR: SHNi-TPR; 90.1 0.62 1.4E-05 27.3 3.6 28 236-263 3-30 (38)
370 PF10516 SHNi-TPR: SHNi-TPR; 90.1 0.61 1.3E-05 27.4 3.5 27 168-194 3-29 (38)
371 PF04053 Coatomer_WDAD: Coatom 89.8 20 0.00043 34.7 17.5 101 139-260 299-399 (443)
372 PF10579 Rapsyn_N: Rapsyn N-te 89.6 1.9 4.2E-05 29.9 6.1 53 139-191 10-68 (80)
373 cd02682 MIT_AAA_Arch MIT: doma 88.9 1.6 3.5E-05 30.1 5.4 40 11-50 2-41 (75)
374 KOG2581|consensus 88.5 22 0.00047 33.3 16.1 101 133-233 167-280 (493)
375 KOG0890|consensus 88.5 13 0.00029 42.5 14.5 136 129-264 1664-1834(2382)
376 KOG0529|consensus 88.4 22 0.00047 33.3 15.4 96 183-278 92-193 (421)
377 PF09670 Cas_Cas02710: CRISPR- 88.1 12 0.00027 35.2 12.7 60 136-195 132-198 (379)
378 cd02683 MIT_1 MIT: domain cont 87.9 0.97 2.1E-05 31.5 4.0 34 12-45 3-36 (77)
379 COG3947 Response regulator con 87.9 2.7 5.8E-05 37.2 7.4 58 236-293 281-338 (361)
380 PF04190 DUF410: Protein of un 87.7 20 0.00043 31.9 18.3 140 129-283 84-243 (260)
381 KOG0529|consensus 87.0 13 0.00028 34.8 11.5 96 150-245 90-194 (421)
382 PF10345 Cohesin_load: Cohesin 86.9 38 0.00083 34.4 23.9 28 22-49 308-335 (608)
383 PF04212 MIT: MIT (microtubule 86.3 1.6 3.4E-05 29.7 4.3 33 13-45 3-35 (69)
384 cd02680 MIT_calpain7_2 MIT: do 86.3 1.3 2.7E-05 30.7 3.7 33 13-45 4-36 (75)
385 COG3947 Response regulator con 86.3 3.6 7.9E-05 36.4 7.3 57 204-260 283-339 (361)
386 PF12854 PPR_1: PPR repeat 85.8 2.2 4.9E-05 24.2 4.1 24 201-224 8-31 (34)
387 PF12739 TRAPPC-Trs85: ER-Golg 85.6 35 0.00076 32.8 14.6 148 138-300 211-401 (414)
388 KOG1538|consensus 85.6 42 0.0009 33.6 15.8 218 139-382 589-844 (1081)
389 cd02684 MIT_2 MIT: domain cont 85.2 1.7 3.6E-05 30.2 4.0 33 13-45 4-36 (75)
390 TIGR03504 FimV_Cterm FimV C-te 85.1 2 4.4E-05 26.2 3.8 25 358-382 2-26 (44)
391 PF13041 PPR_2: PPR repeat fam 85.1 5.7 0.00012 24.7 6.2 29 201-229 4-32 (50)
392 KOG0546|consensus 85.1 1.5 3.1E-05 39.9 4.5 70 204-273 279-348 (372)
393 smart00386 HAT HAT (Half-A-TPR 84.8 2.4 5.2E-05 23.1 4.0 20 218-237 5-24 (33)
394 PF11817 Foie-gras_1: Foie gra 84.6 11 0.00023 33.3 9.8 60 202-261 180-245 (247)
395 PF09205 DUF1955: Domain of un 84.4 17 0.00038 28.3 13.0 49 213-261 99-147 (161)
396 COG1747 Uncharacterized N-term 84.1 43 0.00093 32.5 20.4 173 197-386 63-236 (711)
397 PF11817 Foie-gras_1: Foie gra 83.9 11 0.00024 33.2 9.6 77 151-227 161-245 (247)
398 TIGR03504 FimV_Cterm FimV C-te 83.8 2.3 4.9E-05 25.9 3.6 24 139-162 3-26 (44)
399 cd02678 MIT_VPS4 MIT: domain c 83.8 2.2 4.9E-05 29.5 4.2 33 13-45 4-36 (75)
400 PF12854 PPR_1: PPR repeat 83.6 3.5 7.5E-05 23.4 4.2 27 267-293 6-32 (34)
401 PF13041 PPR_2: PPR repeat fam 83.0 8.2 0.00018 23.9 6.3 28 236-263 5-32 (50)
402 smart00386 HAT HAT (Half-A-TPR 82.8 4 8.7E-05 22.2 4.4 30 248-277 1-30 (33)
403 COG4455 ImpE Protein of avirul 82.8 9.6 0.00021 32.4 8.0 62 207-268 8-69 (273)
404 KOG0546|consensus 82.3 2 4.3E-05 39.1 4.2 108 140-247 227-356 (372)
405 PF10255 Paf67: RNA polymerase 82.3 2.5 5.4E-05 39.8 5.0 56 171-227 127-191 (404)
406 PF00244 14-3-3: 14-3-3 protei 81.0 37 0.00081 29.6 13.5 26 357-382 170-196 (236)
407 cd02656 MIT MIT: domain contai 80.7 3.9 8.4E-05 28.3 4.5 33 13-45 4-36 (75)
408 KOG0686|consensus 80.4 16 0.00035 34.2 9.2 96 166-261 150-256 (466)
409 COG4455 ImpE Protein of avirul 80.1 18 0.00039 30.9 8.7 60 174-233 9-68 (273)
410 KOG3807|consensus 78.7 29 0.00063 31.6 10.1 25 360-384 280-304 (556)
411 cd02677 MIT_SNX15 MIT: domain 78.6 3.8 8.2E-05 28.4 3.8 33 13-45 4-36 (75)
412 KOG0686|consensus 78.6 22 0.00047 33.3 9.5 152 137-293 152-329 (466)
413 KOG3783|consensus 78.2 71 0.0015 31.2 19.8 67 236-303 451-525 (546)
414 smart00745 MIT Microtubule Int 77.8 4.7 0.0001 28.0 4.2 33 13-45 6-38 (77)
415 COG3783 CybC Soluble cytochrom 76.1 19 0.0004 26.0 6.6 47 1-47 47-94 (100)
416 PF09670 Cas_Cas02710: CRISPR- 75.6 74 0.0016 30.1 12.8 60 170-229 135-198 (379)
417 KOG1497|consensus 74.6 59 0.0013 29.5 10.8 94 134-227 102-211 (399)
418 KOG2114|consensus 74.4 1.1E+02 0.0025 31.7 18.4 28 135-162 368-395 (933)
419 PF01535 PPR: PPR repeat; Int 74.2 5.9 0.00013 21.2 3.3 18 208-225 8-25 (31)
420 PF01535 PPR: PPR repeat; Int 74.1 5.9 0.00013 21.2 3.2 25 237-261 3-27 (31)
421 KOG0276|consensus 73.9 40 0.00087 33.4 10.3 73 177-254 648-728 (794)
422 KOG0276|consensus 72.5 78 0.0017 31.6 11.8 131 144-293 595-746 (794)
423 PF09797 NatB_MDM20: N-acetylt 72.0 24 0.00052 33.1 8.7 42 183-224 200-241 (365)
424 KOG0687|consensus 71.3 83 0.0018 28.8 12.1 116 150-265 86-212 (393)
425 PF11846 DUF3366: Domain of un 71.1 18 0.00039 30.4 6.9 43 256-300 133-175 (193)
426 TIGR00756 PPR pentatricopeptid 69.6 11 0.00023 20.7 3.7 24 204-227 4-27 (35)
427 PF14863 Alkyl_sulf_dimr: Alky 69.4 21 0.00046 28.3 6.4 49 166-214 70-118 (141)
428 PF14863 Alkyl_sulf_dimr: Alky 68.2 27 0.00059 27.6 6.8 45 205-249 75-119 (141)
429 TIGR00756 PPR pentatricopeptid 68.0 14 0.0003 20.2 4.0 26 237-262 3-28 (35)
430 cd02680 MIT_calpain7_2 MIT: do 67.9 12 0.00027 25.8 4.2 18 212-229 18-35 (75)
431 PF00244 14-3-3: 14-3-3 protei 67.0 87 0.0019 27.3 13.9 24 139-162 5-28 (236)
432 COG5187 RPN7 26S proteasome re 66.8 98 0.0021 27.8 14.0 103 163-265 112-223 (412)
433 KOG4151|consensus 66.1 16 0.00034 37.1 6.1 109 169-277 56-170 (748)
434 PF10952 DUF2753: Protein of u 65.6 43 0.00094 25.7 6.9 57 204-260 5-76 (140)
435 KOG2114|consensus 65.4 1.8E+02 0.0039 30.4 14.2 54 142-195 341-397 (933)
436 PHA02537 M terminase endonucle 65.2 15 0.00033 31.7 5.2 20 247-266 191-210 (230)
437 PF11846 DUF3366: Domain of un 65.0 29 0.00062 29.1 6.9 48 217-265 128-175 (193)
438 KOG2561|consensus 64.7 69 0.0015 30.5 9.5 28 236-263 269-296 (568)
439 COG3014 Uncharacterized protei 64.4 1.2E+02 0.0026 28.0 12.9 102 185-298 40-154 (449)
440 PF13812 PPR_3: Pentatricopept 64.4 22 0.00047 19.4 4.4 25 237-261 4-28 (34)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 63.5 67 0.0015 24.8 11.1 44 252-296 81-126 (126)
442 smart00299 CLH Clathrin heavy 63.0 59 0.0013 25.4 8.1 35 178-212 19-53 (140)
443 cd02682 MIT_AAA_Arch MIT: doma 63.0 48 0.001 22.9 7.5 7 228-234 41-47 (75)
444 KOG4279|consensus 62.9 55 0.0012 33.4 9.0 20 311-330 381-400 (1226)
445 smart00299 CLH Clathrin heavy 62.7 72 0.0016 24.9 10.3 118 143-279 15-136 (140)
446 KOG1463|consensus 61.0 1.4E+02 0.003 27.6 19.5 30 5-37 41-70 (411)
447 COG4941 Predicted RNA polymera 60.7 1.4E+02 0.003 27.5 14.5 150 152-303 213-399 (415)
448 PF10938 YfdX: YfdX protein; 60.3 90 0.0019 25.2 12.4 56 139-194 79-145 (155)
449 KOG4322|consensus 59.8 38 0.00083 32.0 7.0 33 11-43 269-301 (482)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 59.1 82 0.0018 24.3 8.9 43 218-260 81-125 (126)
451 PF10952 DUF2753: Protein of u 58.9 73 0.0016 24.5 7.1 25 202-226 52-76 (140)
452 KOG0687|consensus 58.8 1.5E+02 0.0032 27.2 14.7 99 134-232 103-213 (393)
453 PF04348 LppC: LppC putative l 58.0 3.3 7.2E-05 41.1 0.0 96 134-229 23-127 (536)
454 PF13226 DUF4034: Domain of un 57.7 1.4E+02 0.0031 26.8 10.0 132 142-285 7-150 (277)
455 KOG0292|consensus 56.2 1.5E+02 0.0033 31.1 10.8 25 138-162 994-1018(1202)
456 PRK12798 chemotaxis protein; R 55.5 1.9E+02 0.0042 27.5 20.9 162 138-301 115-289 (421)
457 KOG4521|consensus 55.3 3.2E+02 0.0068 30.0 13.3 75 207-285 990-1071(1480)
458 KOG4151|consensus 55.1 49 0.0011 33.8 7.4 105 139-243 57-170 (748)
459 cd02679 MIT_spastin MIT: domai 54.5 26 0.00057 24.5 4.0 17 280-297 20-36 (79)
460 PF03194 LUC7: LUC7 N_terminus 54.3 56 0.0012 28.9 7.0 48 5-52 122-169 (254)
461 PF02184 HAT: HAT (Half-A-TPR) 53.2 32 0.0007 19.3 3.4 17 216-232 3-19 (32)
462 PF06957 COPI_C: Coatomer (COP 53.1 2.2E+02 0.0047 27.4 11.4 31 15-45 204-234 (422)
463 KOG2561|consensus 53.0 2.2E+02 0.0047 27.4 12.2 127 15-162 163-294 (568)
464 smart00671 SEL1 Sel1-like repe 52.3 39 0.00085 18.7 4.0 26 168-193 3-32 (36)
465 COG3014 Uncharacterized protei 51.9 2E+02 0.0043 26.6 12.6 36 267-303 212-247 (449)
466 KOG0796|consensus 51.5 40 0.00087 30.5 5.5 42 5-46 121-162 (319)
467 TIGR02710 CRISPR-associated pr 50.3 2.3E+02 0.0049 26.8 13.1 54 138-191 133-196 (380)
468 KOG0889|consensus 50.1 6.1E+02 0.013 31.7 16.0 102 234-336 2812-2926(3550)
469 PF02064 MAS20: MAS20 protein 49.8 52 0.0011 25.3 5.3 28 171-198 68-95 (121)
470 PF08238 Sel1: Sel1 repeat; I 49.2 47 0.001 18.8 4.1 12 182-193 24-35 (39)
471 PF04840 Vps16_C: Vps16, C-ter 48.7 2.2E+02 0.0048 26.2 16.9 100 177-293 188-287 (319)
472 PF07219 HemY_N: HemY protein 48.3 1.1E+02 0.0023 22.9 6.8 45 170-214 63-107 (108)
473 KOG4521|consensus 47.8 4.2E+02 0.009 29.1 13.6 159 136-299 921-1133(1480)
474 PF04212 MIT: MIT (microtubule 47.3 48 0.001 22.2 4.4 13 179-191 18-30 (69)
475 KOG1920|consensus 45.8 4.5E+02 0.0097 28.9 14.4 24 360-383 1189-1212(1265)
476 PF09477 Type_III_YscG: Bacter 44.9 1.3E+02 0.0029 22.5 10.5 83 213-300 19-101 (116)
477 PRK09591 celC cellobiose phosp 44.7 36 0.00079 25.3 3.7 31 15-45 20-50 (104)
478 COG2178 Predicted RNA-binding 44.6 1.9E+02 0.0041 24.3 13.5 46 6-51 20-65 (204)
479 PF13226 DUF4034: Domain of un 44.3 2.4E+02 0.0052 25.4 10.9 71 163-251 74-150 (277)
480 PF09797 NatB_MDM20: N-acetylt 44.2 54 0.0012 30.8 5.8 46 214-259 197-242 (365)
481 cd00215 PTS_IIA_lac PTS_IIA, P 43.4 40 0.00086 24.7 3.7 31 15-45 15-45 (97)
482 PF12739 TRAPPC-Trs85: ER-Golg 42.2 3.2E+02 0.0069 26.2 14.6 26 361-386 376-401 (414)
483 PF03357 Snf7: Snf7; InterPro 42.2 97 0.0021 25.1 6.4 47 5-51 14-60 (171)
484 TIGR00823 EIIA-LAC phosphotran 41.8 43 0.00093 24.7 3.7 31 15-45 17-47 (99)
485 PF02064 MAS20: MAS20 protein 41.3 73 0.0016 24.5 4.9 27 206-232 69-95 (121)
486 smart00777 Mad3_BUB1_I Mad3/BU 40.8 1.4E+02 0.0029 23.2 6.4 58 230-293 65-124 (125)
487 cd02681 MIT_calpain7_1 MIT: do 40.4 67 0.0015 22.3 4.2 15 213-227 19-33 (76)
488 PRK15490 Vi polysaccharide bio 40.2 3.6E+02 0.0079 27.1 10.7 77 146-224 19-98 (578)
489 cd02683 MIT_1 MIT: domain cont 39.5 74 0.0016 22.1 4.4 16 212-227 18-33 (77)
490 COG4259 Uncharacterized protei 39.5 1.4E+02 0.003 22.0 5.7 40 163-202 69-108 (121)
491 PRK15490 Vi polysaccharide bio 39.4 2.8E+02 0.006 27.9 9.7 79 178-258 20-98 (578)
492 PF02255 PTS_IIA: PTS system, 38.9 53 0.0012 24.0 3.8 31 15-45 14-44 (96)
493 KOG1497|consensus 38.8 3.1E+02 0.0068 25.2 15.5 95 166-261 103-211 (399)
494 PF05053 Menin: Menin; InterP 38.3 1E+02 0.0023 30.4 6.5 24 270-293 320-343 (618)
495 PRK10454 PTS system N,N'-diace 38.3 50 0.0011 25.1 3.6 30 16-45 32-61 (115)
496 PHA02537 M terminase endonucle 38.2 33 0.00072 29.7 3.0 23 280-303 190-212 (230)
497 PF12753 Nro1: Nuclear pore co 37.6 64 0.0014 30.3 4.8 46 216-263 334-391 (404)
498 KOG2280|consensus 37.1 5E+02 0.011 27.0 15.6 101 143-257 692-793 (829)
499 COG5187 RPN7 26S proteasome re 36.9 3.2E+02 0.007 24.7 12.5 119 181-300 90-223 (412)
500 PF07219 HemY_N: HemY protein 36.5 1.8E+02 0.0039 21.7 7.0 43 206-248 65-107 (108)
No 1
>KOG2003|consensus
Probab=100.00 E-value=6.5e-45 Score=321.45 Aligned_cols=414 Identities=38% Similarity=0.552 Sum_probs=366.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcc------------
Q psy1863 1 MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFS------------ 68 (425)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~------------ 68 (425)
|++|++|+++||.+|++|++.++.....|+|++|++++++|...+|.+.++|++.+++...|+++||.
T Consensus 135 ed~peek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~n 214 (840)
T KOG2003|consen 135 EDGPEEKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEAN 214 (840)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------------------hhhhhc-c----------------------------------------------------
Q psy1863 69 --------------------NINRKK-N---------------------------------------------------- 75 (425)
Q Consensus 69 --------------------~~~~~~-~---------------------------------------------------- 75 (425)
+.|.++ |
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 222222 0
Q ss_pred -----------------------------------------------------------------hhhcccchhHHHHHH
Q psy1863 76 -----------------------------------------------------------------ARAVRNDALSQLHRE 90 (425)
Q Consensus 76 -----------------------------------------------------------------~~~~~~d~l~~~~~~ 90 (425)
.+++.+|-|++++++
T Consensus 295 ainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 677889999999999
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc----cchH
Q psy1863 91 MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD----EMTS 166 (425)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~ 166 (425)
+...++++|.+++++|+|.|.++|..|++||.+.++.+.+.+++.++.++++..++++|+++.|+++++-+- ....
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776 2334
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 167 SAATNLSFIYFLQG--EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 167 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
.+-.+|..+++.+| ++.+|..+...++.++..++.++.+.|++.+..|++++|...|+.++..+.++.++++++|..+
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA 534 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence 55677888887754 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHH
Q psy1863 245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEK 317 (425)
Q Consensus 245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~ 317 (425)
..+|+.++|+++|-+...+--++..+++.++.+|..+.+..+|++++.+ +..+-|++| +..|+.+ +..+|.+
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q-~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ-ANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH-hcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 9999999999999999888889999999999999999999999999999 999999999 8999998 8899999
Q ss_pred HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh---------hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL---------AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 388 (425)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 388 (425)
++-...+.+|.+++...+++..++.......+...+ .....+.++.|+.+.|+|++|.+.|+.. ....
T Consensus 614 ~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~---hrkf 690 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI---HRKF 690 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH---HHhC
Confidence 999999999999999888875555544444444433 2234456899999999999999999998 6677
Q ss_pred ccchhHHHHHhhhccCcCCCCcHHHHHHhHh
Q psy1863 389 ATNLSFIYFLVSSEFQYLPTSEVPIYLENLL 419 (425)
Q Consensus 389 ~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l 419 (425)
|+++.++.||++- -+.+--.++.+|..++-
T Consensus 691 pedldclkflvri-~~dlgl~d~key~~kle 720 (840)
T KOG2003|consen 691 PEDLDCLKFLVRI-AGDLGLKDAKEYADKLE 720 (840)
T ss_pred ccchHHHHHHHHH-hccccchhHHHHHHHHH
Confidence 8888888887542 22233556667766553
No 2
>KOG4626|consensus
Probab=100.00 E-value=2.5e-33 Score=256.50 Aligned_cols=350 Identities=14% Similarity=0.120 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcc-----hhhcccc
Q psy1863 8 FERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKN-----ARAVRND 82 (425)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~d 82 (425)
+|+-.+-.+.+.+.|-.+..+|+++.|+..++.++++. |....++.+++..+...|++.. .+++..+
T Consensus 109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--------p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK--------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 33444445667778888999999999999999999988 7777788888888888887661 1111100
Q ss_pred --------hhHHH--HHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHH
Q psy1863 83 --------ALSQL--HREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVS 152 (425)
Q Consensus 83 --------~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 152 (425)
.+..+ ...+..++..+.+.+... .+ .-+-.+-++|-++..+|+..
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~----------------------qp---~fAiawsnLg~~f~~~Gei~ 235 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET----------------------QP---CFAIAWSNLGCVFNAQGEIW 235 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhh----------------------CC---ceeeeehhcchHHhhcchHH
Confidence 01111 112222333333322211 00 11122356677777777777
Q ss_pred HHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 153 QAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 153 ~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
.|+..|++++ |..+++|.+||.+|-..+.|+.|+.+|.+|+...|+++.++-++|.+|..+|..+-|+.+|++++++
T Consensus 236 ~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 7777777776 7777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHH
Q psy1863 230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQL 307 (425)
Q Consensus 230 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l 307 (425)
.|+.+.++.|+|.++...|+..+|..+|.+++.+.|+.+++.++||.+|..+|.++.|..+|.+ +++..|+.. ..+|
T Consensus 316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~-al~v~p~~aaa~nNL 394 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK-ALEVFPEFAAAHNNL 394 (966)
T ss_pred CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH-HHhhChhhhhhhhhH
Confidence 7777777777777777777777777777777777777777777777777777777777777777 777777766 6666
Q ss_pred HHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHH---------hhchhhhcHHHHHHHHHHHhcCCHHH
Q psy1863 308 HRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN---------SAHSSLAQDLEINKAVTFLRMNDVSQ 373 (425)
Q Consensus 308 ~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~ 373 (425)
+.+ ++++|+.+|++++++.|...+...+.|-.+-..+.-. ....|-..+++.++|.+|...|+..+
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence 666 6777777777777777777766666663332222211 22233345778889999999999999
Q ss_pred HHHHHHHHHhhccCCccc
Q psy1863 374 AVDVLKSCDEMTSSAATN 391 (425)
Q Consensus 374 A~~~~~~~~~~~~~~~~~ 391 (425)
||..|+.+.++.|+.|+.
T Consensus 475 AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHHHHccCCCCchh
Confidence 999999999999998873
No 3
>KOG4626|consensus
Probab=100.00 E-value=4.3e-32 Score=248.49 Aligned_cols=387 Identities=17% Similarity=0.155 Sum_probs=298.8
Q ss_pred HHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhc-----chhhc-----ccchhHH
Q psy1863 17 GLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKK-----NARAV-----RNDALSQ 86 (425)
Q Consensus 17 ~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~-----~~d~l~~ 86 (425)
..++-|...++.|+|++|++.+......+ |.+.+...-++-.+.+..++. +..++ ..|.+..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d--------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn 121 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED--------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSN 121 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC--------CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHH
Confidence 37788999999999999999987655433 666666667777777666654 11111 1122221
Q ss_pred H-----HHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcch--------------hhHHHHHHHHHHHH
Q psy1863 87 L-----HREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL--------------AQDLEINKAVTFLR 147 (425)
Q Consensus 87 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~ 147 (425)
+ +++....+......+ ..+.++|..+|--+...+...+..+. .....-.+|..+-.
T Consensus 122 ~aN~~kerg~~~~al~~y~~a-----iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAA-----IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHH-----HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 1 111112222222211 13344555544433333333222222 22334467888889
Q ss_pred cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (425)
.|+..+|..+|.+++ |..+.+|.+||.++..+|+...|+.+|++|++++|...++|++||++|-..+.+++|+.+|.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 999999999999999 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-
Q psy1863 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA- 303 (425)
Q Consensus 225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~- 303 (425)
+++.+.|+++.++.|+|.+|..+|..+-|+.+|+++++..|+.++++.++|.++...|+..+|..+|.+ ++.+.|+++
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk-aL~l~p~had 355 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK-ALRLCPNHAD 355 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH-HHHhCCccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred -HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHH---------hhchhhhcHHHHHHHHHHHhc
Q psy1863 304 -LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN---------SAHSSLAQDLEINKAVTFLRM 368 (425)
Q Consensus 304 -~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~ 368 (425)
+.+||.+ ..++|...|.+++..+|.......+++..+-.++... ....|...+.+.++|..|..+
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 8999988 8899999999999999998888777764333222222 334455678888999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCcc---chhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 369 NDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 369 g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
|+.+.|+..|.++....|...+ |+..+|- +.| -..+|+.-++++|++=|
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k----DsG--ni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYK----DSG--NIPEAIQSYRTALKLKP 487 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh----ccC--CcHHHHHHHHHHHccCC
Confidence 9999999999999887776543 4554444 445 57788888888887644
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=9.3e-27 Score=232.96 Aligned_cols=245 Identities=12% Similarity=0.056 Sum_probs=200.8
Q ss_pred cCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE 221 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 221 (425)
.+++++|+..|++++ |..+.++..+|.++..+|++++|+..|++++..+|.+..+++.+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 468999999999887 45677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863 222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~ 301 (425)
+|+++++.+|+++.+++++|.++...|++++|+.+|++++.++|++..++.++|.++..+|++++|+..|++ ++...|+
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~-al~~~P~ 465 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR-CKKNFPE 465 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc------hHHHH---------HHHhHH-hhchhhhcHHH
Q psy1863 302 DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN------GYNWC---------VQSIRN-SAHSSLAQDLE 358 (425)
Q Consensus 302 ~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~---------~~~~~~-~~~~~~~~~~~ 358 (425)
++ +..+|.+ ++++|+..|++++.+.|......... +.... ...+.. ....+.....+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 88 6677777 88999999999999988653322211 10000 011111 11223334567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS 393 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 393 (425)
..+|.++...|++++|+..|+++.++.+...+...
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~ 580 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ 580 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH
Confidence 78999999999999999999999877665444333
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.6e-23 Score=220.00 Aligned_cols=382 Identities=14% Similarity=0.094 Sum_probs=258.1
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH--
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK-- 92 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~-- 92 (425)
+..++..|..+..+|++++|+..+++++++. |........++..|...|++.. ++..+..-..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~ 86 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKD--------PNDAEARFLLGKIYLALGDYAA-------AEKELRKALSLG 86 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHcC
Confidence 3568899999999999999999999999877 6666677778888888887662 1111111000
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhc--CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH
Q psy1863 93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS--AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS 167 (425)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~ 167 (425)
+.........++.. ...+++ ...++.+... ...+.....+..+|..+...|++++|+..|++++ |..+.
T Consensus 87 ~~~~~~~~~~a~~~--~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 160 (899)
T TIGR02917 87 YPKNQVLPLLARAY--LLQGKF----QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY 160 (899)
T ss_pred CChhhhHHHHHHHH--HHCCCH----HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Confidence 00000000000000 001112 2222222211 1233445667788888888888888888888887 77788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 247 (425)
++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.++..++.++...
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 240 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEA 240 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHH
Q psy1863 248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCIL 320 (425)
Q Consensus 248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~ 320 (425)
|++++|...++++++..|+++.+++..|.++...|++++|+..+++ +++..|++. +..++.+ ++++|...+.
T Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 319 (899)
T TIGR02917 241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQD-ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN 319 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888 888888766 4444444 7888888888
Q ss_pred HHHhhcCCchhhHhhchHHHHHHHhHHh---------hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccc
Q psy1863 321 TSAKLIAPSIEDNFSNGYNWCVQSIRNS---------AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATN 391 (425)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 391 (425)
++++..|.+.......+......+.... ...+....++..++.++...|++++|+..|+++.+..|..
T Consensus 320 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 396 (899)
T TIGR02917 320 QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN--- 396 (899)
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence 8888888776555444432222211111 1122234556667777788888888888777775554332
Q ss_pred hhHHHHHhhhccCcCCCCcHHHHHHhHhHH
Q psy1863 392 LSFIYFLVSSEFQYLPTSEVPIYLENLLTV 421 (425)
Q Consensus 392 l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~ 421 (425)
......+...........++...++++++.
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 222222222222333455566666655543
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.9e-23 Score=219.38 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
...+..+|.++...|++++|+.+|++++ |..+.++..+|.++...|++++|+..|++++..+|.+..++..++.++.
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3456677888888888888888888776 7777777888888888888888888888888888888778888888887
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
..|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888888888877777777777777777777778888888777777777777777777777777778888888777
Q ss_pred HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
++ +++..|+++ +..++.+ ++++|...++++++..|.+...+...+
T Consensus 625 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 625 KK-LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred HH-HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77 777777766 5555555 777777777777777777665554443
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=1.5e-23 Score=209.55 Aligned_cols=319 Identities=10% Similarity=-0.013 Sum_probs=239.8
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA 95 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 95 (425)
..+.--+..++.+|++++|+..++..+... |.+....+.+++.....|++. .+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------p~~~~~l~~l~~~~l~~g~~~-------------------~A 95 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--------KNGRDLLRRWVISPLASSQPD-------------------AV 95 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--------CCchhHHHHHhhhHhhcCCHH-------------------HH
Confidence 346666778899999999999998887766 667677777777776666544 22
Q ss_pred HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHH
Q psy1863 96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNL 172 (425)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 172 (425)
...+..+... .+...+.+..+|.++...|++++|+..|++++ |.++.++..+
T Consensus 96 ~~~l~~~l~~-------------------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~l 150 (656)
T PRK15174 96 LQVVNKLLAV-------------------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALH 150 (656)
T ss_pred HHHHHHHHHh-------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 2222222111 11123445788889999999999999999988 8888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHH
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA-TCIEALYNLGLAHKHLNEYS 251 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~ 251 (425)
|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++..+| ........++.++...|+++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 99999999999999999988888898888877664 47888999999999999888875 33445566688888999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHH
Q psy1863 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ----ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCIL 320 (425)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~ 320 (425)
+|+..+.+++...|+++.++..+|.++...|++++ |+..|++ ++..+|+++ +..+|.+ ++++|+..++
T Consensus 230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~-Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 230 EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH-ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999885 7899999 999999888 6777776 8889999999
Q ss_pred HHHhhcCCchhhHhhchHHHHHHHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863 321 TSAKLIAPSIEDNFSNGYNWCVQSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 388 (425)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 388 (425)
+++...|.+......+|..+...+....+. .+........+|.++...|++++|+..|+++.+..|..
T Consensus 309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 999998888766665553333222222211 11122334456777888888888888888886666554
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.1e-23 Score=221.98 Aligned_cols=360 Identities=13% Similarity=0.064 Sum_probs=253.3
Q ss_pred hhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHHHHH
Q psy1863 22 SCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILT 101 (425)
Q Consensus 22 ~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~ 101 (425)
+..+...|++++|+..+++++... |........++..|...|++. ++...+..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~-------------------eA~~~l~~ 328 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRA-------------------RAVAQFEK 328 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHHHHHH
Confidence 667788999999999999999877 655556667777777666654 33333333
Q ss_pred hhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHH
Q psy1863 102 SAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFL 178 (425)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~ 178 (425)
+.+.- |.... ...| ...+.. ......+..|..+...|++++|+..|++++ |.++.++..+|.++..
T Consensus 329 Al~~~-p~~~~----~~~~-~~ll~~-----~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 329 ALALD-PHSSN----RDKW-ESLLKV-----NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHhC-CCccc----hhHH-HHHHHh-----hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 32221 11000 0000 000000 001122456778888888888888888888 7778888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH------------------------------------------HHHHhcCH
Q psy1863 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGN------------------------------------------CAMAREDY 216 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------------------------~~~~~g~~ 216 (425)
.|++++|+..|+++++.+|++..++..++. ++...|++
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~ 477 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW 477 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence 888888888888888888888766555444 44467899
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~ 296 (425)
++|+..|+++++.+|+++.+++.+|.+|...|++++|+..+++++...|+++.+++.++..+...|++++|+..+++ +.
T Consensus 478 ~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~-l~ 556 (1157)
T PRK11447 478 AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT-LP 556 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999998888888887788888888777654 31
Q ss_pred ----------------------------------------hcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863 297 ----------------------------------------EAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPS 329 (425)
Q Consensus 297 ----------------------------------------~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~ 329 (425)
+..|.++ +..++.+ ++++|+..|+++++..|.+
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~ 636 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2245555 5556655 8999999999999999999
Q ss_pred hhhHhhchHHHHHHHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccch---hHHHH
Q psy1863 330 IEDNFSNGYNWCVQSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNL---SFIYF 397 (425)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~ 397 (425)
......++..+...+....+. .+.....+..+|.++...|++++|++.++++....+..+... .....
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 888777765443332222222 223445677789999999999999999999977665544311 11111
Q ss_pred HhhhccCcCCCCcHHHHHHhHhH
Q psy1863 398 LVSSEFQYLPTSEVPIYLENLLT 420 (425)
Q Consensus 398 l~~~~~~~~~~~ea~~~~~~~l~ 420 (425)
+...........+|+.++++++.
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 11223333467788888888864
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=5e-23 Score=206.16 Aligned_cols=284 Identities=15% Similarity=0.049 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHH-----------------------
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMA----------------------- 189 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~----------------------- 189 (425)
..+.++|.++...|++++|+..+.+++ |....+++.+|.+|..+|++++|+..|
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK 240 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 456777888888888888888888877 777777777777777777777775433
Q ss_pred -----------------------------------------------------------------------------HHH
Q psy1863 190 -----------------------------------------------------------------------------EEA 192 (425)
Q Consensus 190 -----------------------------------------------------------------------------~~a 192 (425)
+++
T Consensus 241 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 241 KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 233
Q ss_pred Hhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 193 CTA---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 193 l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
+.. .|....++..+|.++..+|++++|+..|++++.++|++..++..+|.++...|++++|+..|+++++.+|+++.
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 400 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 322 24455667888888888999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHH
Q psy1863 270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCV 342 (425)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 342 (425)
+++.+|.++...|++++|+.+|++ +++++|++. +..+|.+ ++++|+..++++++..|.+...+...|..+..
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~k-al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQK-SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999 999999887 6677776 78899999999999888888777777655444
Q ss_pred HHhHHhhchhhh---------c------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcC
Q psy1863 343 QSIRNSAHSSLA---------Q------DLEINKAV-TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYL 406 (425)
Q Consensus 343 ~~~~~~~~~~~~---------~------~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 406 (425)
.+....+...+. . ..++..+. ++...|++++|+..++++.+..|... .....+....+...
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~---~a~~~la~~~~~~g 556 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD---IAVATMAQLLLQQG 556 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcc
Confidence 333322222111 1 11222233 33446899999999988876654433 22333333344445
Q ss_pred CCCcHHHHHHhHhHHhh
Q psy1863 407 PTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 407 ~~~ea~~~~~~~l~~~~ 423 (425)
..++|+.++++++++..
T Consensus 557 ~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 557 DVDEALKLFERAAELAR 573 (615)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 78888899988877643
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=7.6e-23 Score=217.64 Aligned_cols=278 Identities=16% Similarity=0.159 Sum_probs=217.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------H
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA--------------A 202 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 202 (425)
.+|..+...|++++|+..|++++ |.++.++..+|.++...|++++|+.+|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45889999999999999999999 889999999999999999999999999999999997653 1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-----
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL----- 277 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----- 277 (425)
...+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++.+|++..++..++.+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 245688899999999999999999999999999999999999999999999999999999999988776655544
Q ss_pred -------------------------------------HHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHH
Q psy1863 278 -------------------------------------YEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKH 313 (425)
Q Consensus 278 -------------------------------------~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~ 313 (425)
+...|++++|+..|++ +++.+|+++ +..++.+ +++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ-RLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4467999999999999 999999998 6677766 999
Q ss_pred HHHHHHHHHHhhcCCchhhHhhchHHHHH--------HHhH------------------------------------H--
Q psy1863 314 EAEKCILTSAKLIAPSIEDNFSNGYNWCV--------QSIR------------------------------------N-- 347 (425)
Q Consensus 314 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~------------------------------------~-- 347 (425)
+|+..++++++..|.+....+..+..... ..+. .
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999887765544321100 0000 0
Q ss_pred ---hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHH
Q psy1863 348 ---SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTV 421 (425)
Q Consensus 348 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~ 421 (425)
....+.....++.+|.++...|++++|+..|+++....|.++. ....+...........+|..+++++++.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~---a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD---ARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 0011223446677888888888888888888888766554433 2222222233333566666666666544
No 11
>KOG0547|consensus
Probab=99.93 E-value=1e-23 Score=189.00 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
.+.+...|..++-.|+.-.|...|+.++ |.....|..+|.+|....+.++....|.+|.+++|.++++|+..|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 3445566777888888888888888888 5555668888888888888888888888888888888888888888888
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
-++++++|+.-|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCcc------hH--HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHH
Q psy1863 292 ENLLLEAVRN------DA--LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 357 (425)
Q Consensus 292 ~~~a~~~~p~------~~--~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (425)
.+ ++++.|. ++ +.+-+.+ +...|+..+.++++++|.... .
T Consensus 486 D~-ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~-------------------------A 539 (606)
T KOG0547|consen 486 DK-AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ-------------------------A 539 (606)
T ss_pred HH-HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH-------------------------H
Confidence 88 8888887 33 3333333 778888888888888886543 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHH
Q psy1863 358 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYF 397 (425)
Q Consensus 358 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 397 (425)
+..+|.+-+.+|+.++|+++|++...+.....+.+....+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL 579 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4557888999999999999999998777666665555554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.8e-22 Score=201.72 Aligned_cols=319 Identities=12% Similarity=0.021 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHRE 90 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~ 90 (425)
...+.+.|...++.....|++++|++.+++++... |.....+..++..+...|++.
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~---------------- 127 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYA---------------- 127 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHH----------------
Confidence 34456667777888889999999999999999887 776666777777777766654
Q ss_pred HHHHHHHHHHHhhhhhh------------hchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 91 MKHEAEKCILTSAKLIA------------PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVL 158 (425)
Q Consensus 91 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 158 (425)
++...+..+..+-+ -...+++..+...+...+...+.. ...+... ..+...|++++|+..+
T Consensus 128 ---~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~---~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 128 ---TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR---GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred ---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC---HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 12121111111100 000011111211111222211111 1122222 2355666666666666
Q ss_pred Hhcc---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhcC
Q psy1863 159 KSCD---E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK----GKELYVHALDND 230 (425)
Q Consensus 159 ~~~~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~ 230 (425)
++++ | ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ |+..|++++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 6655 1 2223334455666666666666666666666666666666666666666666664 566666666666
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH 308 (425)
Q Consensus 231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~ 308 (425)
|+++.++.++|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++ ++..+|+++ ...++
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~-al~~~P~~~~~~~~~a 359 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ-LAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCccchHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666 666666654 22222
Q ss_pred Hh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863 309 RE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE 383 (425)
Q Consensus 309 ~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 383 (425)
.+ ++++|+..|+++++..|... ...|++|+..|.++..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~-------------------------------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHL-------------------------------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhc-------------------------------------hhhHHHHHHHHHHHHH
Confidence 22 66666666666666666542 2455677777777766
Q ss_pred hccCCccchhHHHHH
Q psy1863 384 MTSSAATNLSFIYFL 398 (425)
Q Consensus 384 ~~~~~~~~l~~~~~l 398 (425)
..+.......+..-+
T Consensus 403 ~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 403 AVNLPPERLDWAWEV 417 (656)
T ss_pred hcCCccchhhHHHHH
Confidence 555544443454444
No 13
>KOG1126|consensus
Probab=99.92 E-value=9.6e-24 Score=196.41 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc-------------------------------------cchHHHHHHHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD-------------------------------------EMTSSAATNLSFIYFL 178 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-------------------------------------~~~~~~~~~lg~~~~~ 178 (425)
.+...+|..|+..++|++|..+|+.+. |..|.+|..+|.||..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 556789999999999999999998875 6667777778888877
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 258 (425)
+++++.|+++|++|+.++|....++..+|.-+....++|.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 78888888888888888887777777777777777778888888888887777777788888888888888888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~ 331 (425)
+|+.++|.+......+|.++.++|+.++|+.+|++ |+.++|.++ .+..+.+ ++++|...+++.-.+.|+..
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~-A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es- 591 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK-AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES- 591 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH-HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-
Confidence 88888887777777777777778888888888887 777777777 3333443 77777777777777766654
Q ss_pred hHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863 332 DNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 390 (425)
.++..+|.+|.++|+.+.|+..|--+..+.|...+
T Consensus 592 ------------------------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 592 ------------------------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ------------------------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 45556789999999999999999998888877665
No 14
>KOG2002|consensus
Probab=99.91 E-value=1.1e-21 Score=189.38 Aligned_cols=403 Identities=15% Similarity=0.151 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCC-Ccccccchhcchhhhhcc-------hhhcccc
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGH-ADSHNIELTFSNINRKKN-------ARAVRND 82 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~-------~~~~~~d 82 (425)
-...|=.|+..|+..+..|+|.+|+..|+.|+.+. |... .....+|..+.++|+..- +.-+...
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in--------p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~ 231 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRIN--------PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT 231 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC--------cccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence 34457789999999999999999999999998877 4433 334455555555554330 1111111
Q ss_pred h------hHHHHHHHH--HHHHHHHHHhhhhhh-----hc----hhhh-h-hhhHHHHHH----HHHhcCCcchhhHHHH
Q psy1863 83 A------LSQLHREMK--HEAEKCILTSAKLIA-----PS----IEDN-F-SNGYNWCVQ----SIRNSAHSSLAQDLEI 139 (425)
Q Consensus 83 ~------l~~~~~~~~--~~~~~~~~~~~~~~~-----~~----~~~~-~-~~~~~~~~~----~~~~~~~~~~~~~~~~ 139 (425)
. |..+..... ......+....+.+. |. +... | ...|..+.. .+.......+.++.++
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY 311 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1 111111100 000000111111110 10 1111 1 112332222 2333444456677889
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE- 214 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 214 (425)
.+|..+..+|+|++|..+|.+++ +++ .-.++.+|.+|...|+++.|+.+|+++++..|++..+...+|.+|...+
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence 99999999999999999999998 444 6778899999999999999999999999998888777777777776654
Q ss_pred ---CHHHHHHHHHHHHhcCcCc--------------------------------------HHHHHHHHHHHHHcCCHHHH
Q psy1863 215 ---DYVKGKELYVHALDNDATC--------------------------------------IEALYNLGLAHKHLNEYSDS 253 (425)
Q Consensus 215 ---~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~la~~~~~~g~~~~A 253 (425)
..+.|..+..+++...|.+ +..++++|..++..|++++|
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 4555666666655554333 34556788888888888888
Q ss_pred HHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863 254 LECFHKLQAI-----VPSM-----PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE 316 (425)
Q Consensus 254 ~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~ 316 (425)
...|..++.. +++. ....+++|.++..+++++.|.+.|.. .++.+|+.. +..++.+ ...+|.
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~-Ilkehp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS-ILKEHPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHCchhHHHHHHhhHHHHhccCcHHHH
Confidence 8888777765 1221 23567777777777777777777777 776666554 3333311 444444
Q ss_pred HHHHHHHhhcCCchh-----------------------------------------------------------------
Q psy1863 317 KCILTSAKLIAPSIE----------------------------------------------------------------- 331 (425)
Q Consensus 317 ~~~~~a~~~~~~~~~----------------------------------------------------------------- 331 (425)
..+..++..+..++.
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 455555444444444
Q ss_pred -----------------hHhhchHHHHHHHhHHhhchhh---------hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863 332 -----------------DNFSNGYNWCVQSIRNSAHSSL---------AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMT 385 (425)
Q Consensus 332 -----------------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 385 (425)
.....|......+....+...+ ..++|+++|.||+.+|+|..|++.|+.+.+..
T Consensus 631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332222111111111111 34788999999999999999999999997655
Q ss_pred cCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 386 SSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 386 ~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
. ..++..++.+|....+......++.+++.+++.+.|
T Consensus 711 ~-~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 711 Y-KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred c-ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 5 345566777777777777777788888877776654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-20 Score=179.53 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=136.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc--cc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD--EM-----TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~--~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
..+|..+...|++++|+..+++++ +. ...++..+|.+|...|++++|+..|+++++.+|.+..++..++.++.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 455666666666666666666655 11 12455666666666666666666666666666666666666666666
Q ss_pred HhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
..|++++|+..++++++..|.+ ...+..+|.++...|++++|+..|+++++..|+...++..+|.++...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 22345566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863 287 ASDVNENLLLEAVRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE 358 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (425)
|+..+++ +...+|.+. +..++.+ +.++|...++++++..|+.. ..
T Consensus 233 A~~~~~~-~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~--------------------------~~ 285 (389)
T PRK11788 233 AIEALER-VEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD--------------------------LL 285 (389)
T ss_pred HHHHHHH-HHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--------------------------HH
Confidence 6666666 666666543 3334333 66666666666666555321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMT 385 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 385 (425)
..++.++...|++++|+..++++.+..
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 334566666677777777666664443
No 16
>KOG1126|consensus
Probab=99.89 E-value=1.4e-21 Score=182.16 Aligned_cols=288 Identities=16% Similarity=0.115 Sum_probs=230.5
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK 92 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 92 (425)
..+...+..+.+...+=+.++|+..|.+ + ...+.|.+++..++|+.+ ++....
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k-l--------------p~h~~nt~wvl~q~Gray------------FEl~~Y 369 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEK-L--------------PSHHYNTGWVLSQLGRAY------------FELIEY 369 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--------------HHhcCCchHHHHHHHHHH------------HHHHHH
Confidence 3456667778888888888888888755 2 123445556666666543 222333
Q ss_pred HHHHHHHHHhhhhhhhchhh-hhhhhHH-----------HHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy1863 93 HEAEKCILTSAKLIAPSIED-NFSNGYN-----------WCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKS 160 (425)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 160 (425)
.+++.++..+-+.-.-.+.+ ++...-- -+.+.+.. .+...+.|-.+|+++..+++++.|+++|++
T Consensus 370 ~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~R 446 (638)
T KOG1126|consen 370 DQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKR 446 (638)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 34444443332221111111 1111000 11222222 233456778899999999999999999999
Q ss_pred cc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHH
Q psy1863 161 CD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEAL 237 (425)
Q Consensus 161 ~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (425)
++ |..+.+|..+|--+....++|.|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-+|++|+.++|.+....
T Consensus 447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence 99 888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----
Q psy1863 238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE----- 310 (425)
Q Consensus 238 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~----- 310 (425)
..+|.++.++|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..+++ ..++.|++. +..+|.+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe-Lk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE-LKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999 999999998 7788887
Q ss_pred hHHHHHHHHHHHHhhcCCchh
Q psy1863 311 MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 311 ~~~~A~~~~~~a~~~~~~~~~ 331 (425)
+.+.|+..|.-+.+++|....
T Consensus 606 ~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 606 NTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHhhHHHhcCCCccch
Confidence 889999999999999997655
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=2.3e-19 Score=183.83 Aligned_cols=198 Identities=10% Similarity=0.018 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
.+.+|..+...|++++|+..|+++. +.....+..+|.++...|++++|+.+++++++.+|.+......++......|+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 4666778889999999999999887 44556688899999999999999999999999999998888877777778899
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a 295 (425)
+++|+..|+++++.+|+ +.++.++|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|++ +
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~-A 669 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER-A 669 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-H
Confidence 99999999999999997 889999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 296 LEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 296 ~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
++.+|+++ +.++|.+ ++++|+.+++++++..|.........|
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 99999999 7788887 899999999999999998876666555
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.8e-19 Score=171.32 Aligned_cols=256 Identities=14% Similarity=0.119 Sum_probs=213.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAM 211 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 211 (425)
+..|..+...|++++|+..|.+++ |.++.++..+|.++...|++++|+..+++++...+.. ..++..+|.++.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999 8888999999999999999999999999998864333 356899999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-----EVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 286 (425)
..|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|... ..+..+|.++...|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999888653 256789999999999999
Q ss_pred HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHH
Q psy1863 287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 359 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (425)
|+..|++ +++..|++. +..++.+ ++++|...++++....|.... ..+.
T Consensus 199 A~~~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------------~~~~ 253 (389)
T PRK11788 199 ARALLKK-ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS------------------------EVLP 253 (389)
T ss_pred HHHHHHH-HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH------------------------HHHH
Confidence 9999999 999999877 6666666 899999999999987665321 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 360 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
.++.+|...|++++|+..++++.+..|..+. ...+..........++|..+++++++..|
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~----~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGADL----LLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 5788899999999999999999777654322 12222223333467788888888877644
No 19
>KOG1155|consensus
Probab=99.87 E-value=3.8e-19 Score=159.00 Aligned_cols=224 Identities=17% Similarity=0.148 Sum_probs=162.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---c----------------------------------chHHHHHHHHHHHHHcCC
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---E----------------------------------MTSSAATNLSFIYFLQGE 181 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~----------------------------------~~~~~~~~lg~~~~~~g~ 181 (425)
...|.+...+.||++|+..|+.+. | -.+++..-+|+.|...++
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 456777888888888888888876 1 122333344556666777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
.++|+.+|++|++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|.+|--++...=|+-+|++|+
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHh
Q psy1863 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNF 334 (425)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~ 334 (425)
...|+++..|..||.||.++++.++|+.+|.+ ++.....+. +..+|.+ +..+|..+|++.++...
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr-ai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~------- 497 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKR-AILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE------- 497 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------
Confidence 88888888888888888888888888888888 777765544 7777776 77777777777655320
Q ss_pred hchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 335 SNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
......+-...+...+|.-+.+++++++|..+...+
T Consensus 498 -----------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 498 -----------LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred -----------hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 001111222334445888888888888888766665
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=3.3e-19 Score=182.67 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=179.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
++.+|..+...|++++|+.+|++++ |.....+..++......|++++|+..++++++.+|+ +.++.++|.++.+.|
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 4678999999999999999999999 666666667777777789999999999999999996 999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|++
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~- 702 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL- 702 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 295 LLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 295 a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
+++..|++. ....|.+ ++..|.+.+.+.....|... .....|
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g 751 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSG 751 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccc
Confidence 999999987 4455555 78899999999999998887 444444
No 21
>KOG2002|consensus
Probab=99.85 E-value=3e-18 Score=165.79 Aligned_cols=285 Identities=17% Similarity=0.172 Sum_probs=177.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (425)
++..|.+.+..|+|-.|+.+|++++ ...++....+|.|++.+|+.+.|+..|.++++++|.+..++..||.+-...
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 4677888888999999999999987 334566677888888888888888888888888777666665555554433
Q ss_pred c---CHHHHHHHHHHHHhcCcCcHHH-------------------------------------HHHHHHHHHHcCCHHHH
Q psy1863 214 E---DYVKGKELYVHALDNDATCIEA-------------------------------------LYNLGLAHKHLNEYSDS 253 (425)
Q Consensus 214 g---~~~~A~~~~~~al~~~~~~~~~-------------------------------------~~~la~~~~~~g~~~~A 253 (425)
. .+..+...+.++...+|.+|.+ ++.+|.+|..+|+|++|
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 2 2444555555555555555444 45555555555555555
Q ss_pred HHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh---------hHHHHHHHHHH
Q psy1863 254 LECFHKLQAIVPSM-PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE---------MKHEAEKCILT 321 (425)
Q Consensus 254 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---------~~~~A~~~~~~ 321 (425)
..+|.++++.+|++ .-.++.+|..|...|+++.|+.+|++ .++..|++. +.-||.+ ..++|..+..+
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk-v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEK-VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHH-HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 55555555555554 44555555555555555555555555 555555555 3334433 22455555555
Q ss_pred HHhhcCCchhhHhhchHHHHHHHhH-------------HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q psy1863 322 SAKLIAPSIEDNFSNGYNWCVQSIR-------------NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM---- 384 (425)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 384 (425)
+++..|.+...+..+++.+...... ........+++..++|..++..|++.+|...++.+...
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 5555555555555444322211000 11112234567778999999999999999999998643
Q ss_pred -ccCC--ccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 385 -TSSA--ATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 385 -~~~~--~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
.+.. ..++...|.+-...-..+.+..|.+.+..+++..|
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 1111 24455666664444444578888888888887765
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=6.3e-19 Score=144.46 Aligned_cols=201 Identities=20% Similarity=0.195 Sum_probs=179.4
Q ss_pred cchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863 131 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG 207 (425)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (425)
...+.+..+.+|.-|+..|++..|...+++++ |....+|..++.+|...|+.+.|.+.|++|++++|++.++++|.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34567888999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (425)
..++.+|++++|...|++++.. .|..+.++.|+|.|..+.|+++.|..+|++++..+|+++.+...++..++..|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 9999999999999999999975 45668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcchH---HH--HHHHh--hHHHHHHHHHHHHhhcCCchhh
Q psy1863 286 QASDVNENLLLEAVRNDA---LS--QLHRE--MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~---~~--~l~~~--~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
.|..+++. .....+-.. |. .++.. +.+.+-.+=.+..+.+|.+.+.
T Consensus 191 ~Ar~~~~~-~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 191 PARLYLER-YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHH-HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999 766655444 22 22222 7777777777788888877653
No 23
>KOG1173|consensus
Probab=99.84 E-value=3.7e-18 Score=156.41 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAA-TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
..++....+..++..++|.+..++....+ |.++.++ ..+| ++...|+..+-...-.+.++..|+.+..|+.+|..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 35677888999999999999999999988 6665555 4556 88999999998888899999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
|...|++.+|..+|.++..++|....+|...|..+...|.-++|+.+|..|-++.|.......-+|.-|..+++++-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863 290 VNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 290 ~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~ 327 (425)
+|.+ |+.+.|.+| +..+|.+ .+.+|..+|+.++...+
T Consensus 402 Ff~~-A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 402 FFKQ-ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHH-HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 9999 999999999 7788887 88999999999985443
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=2.4e-18 Score=150.98 Aligned_cols=194 Identities=22% Similarity=0.260 Sum_probs=173.8
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
......++.+|..+...|++++|+..+++++ |..+.++..+|.++...|++++|+..++++++..|.+..++.++|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3346777899999999999999999999998 8889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDND--ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
++...|++++|+..+++++... |.....+.++|.++...|++++|...+.+++...|+++.++..+|.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999863 45677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863 287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI 326 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~ 326 (425)
|..++++ ++...|.++ +..++.+ +.++|..+.+.+....
T Consensus 188 A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLER-YQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHH-HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999999 999887776 4444444 6777777766665543
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=2.8e-18 Score=155.55 Aligned_cols=218 Identities=15% Similarity=0.037 Sum_probs=166.3
Q ss_pred cCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK 220 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 220 (425)
.+..+.++..+.+++ +..+..++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346677777777777 3447789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p 300 (425)
..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++..... ..+....+++++|+..+.+ +....+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~-~~~~~~ 196 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQ-RYEKLD 196 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHH-HHhhCC
Confidence 99999999999999999999999999999999999999999999998742221 2234567899999999988 665433
Q ss_pred chHH-HHHHHh---hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHH
Q psy1863 301 NDAL-SQLHRE---MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVD 376 (425)
Q Consensus 301 ~~~~-~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 376 (425)
.+.| ..+..+ +...+ ..+..+.+..+..... .+-..+.|+.+|.++...|++++|+.
T Consensus 197 ~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l------------------~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTEL------------------AERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred ccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH------------------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3221 111111 22111 1223332222221111 11124678899999999999999999
Q ss_pred HHHHHHhhcc
Q psy1863 377 VLKSCDEMTS 386 (425)
Q Consensus 377 ~~~~~~~~~~ 386 (425)
.|+++....+
T Consensus 258 ~~~~Al~~~~ 267 (296)
T PRK11189 258 LFKLALANNV 267 (296)
T ss_pred HHHHHHHhCC
Confidence 9999976554
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=9.9e-18 Score=171.25 Aligned_cols=349 Identities=12% Similarity=0.031 Sum_probs=227.3
Q ss_pred HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHH
Q psy1863 18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEK 97 (425)
Q Consensus 18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~ 97 (425)
+-.-..+..+.|++++|++.+.++...+ +.......+++..+.+.|++. ++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--------~~~a~~~~~lA~~~~~~g~~~-------------------~A~~ 70 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM--------QLPARGYAAVAVAYRNLKQWQ-------------------NSLT 70 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHH
Confidence 4444567789999999998887765433 333333556666666666543 1222
Q ss_pred HHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHH
Q psy1863 98 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSF 174 (425)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~ 174 (425)
.+..+. ... +...+....+|.++...|++++|+..+++++ |.++. +..+|.
T Consensus 71 ~~~~al----------------------~~~---P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 71 LWQKAL----------------------SLE---PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred HHHHHH----------------------HhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 111111 110 1123344677778888888888888888887 77777 888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH------------------------------------
Q psy1863 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK------------------------------------ 218 (425)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------------------------------ 218 (425)
++...|++++|+..++++++..|+++.++..++.++...|..++
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 88888888888888888888888888887777777766565554
Q ss_pred ----------HHHHHHHHHhcCcCcHH-------HHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy1863 219 ----------GKELYVHALDNDATCIE-------ALYN-LGLAHKHLNEYSDSLECFHKLQAIVPSMP-EVLYQIASLYE 279 (425)
Q Consensus 219 ----------A~~~~~~al~~~~~~~~-------~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 279 (425)
|+..++.+++..|.++. +... ++ .+...|++++|+..|+++++..|..+ .+...+|.+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 44444444443222211 2222 33 34577899999999999888865433 24444688999
Q ss_pred HcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchh---------------hH
Q psy1863 280 ITGDVEQASDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIE---------------DN 333 (425)
Q Consensus 280 ~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~---------------~~ 333 (425)
.+|++++|+..|++ ++...|.++ ...+... ++++|...++++....|.... ..
T Consensus 284 ~~g~~e~A~~~l~~-~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 284 KLHQPEKAQSILTE-LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred hcCCcHHHHHHHHH-HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999 888877651 3333322 899999999999888774321 11
Q ss_pred hhchHHHH--------HHHhHH-hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccC
Q psy1863 334 FSNGYNWC--------VQSIRN-SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQ 404 (425)
Q Consensus 334 ~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 404 (425)
...+.... ...+.. ....|....+++.+|.++...|++++|++.++++....| ++....+.+....++
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P---d~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP---RNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHH
Confidence 11111111 111111 223444567888999999999999999999999976664 444444444444555
Q ss_pred cCCCCcHHHHHHhHhHHhhc
Q psy1863 405 YLPTSEVPIYLENLLTVLQY 424 (425)
Q Consensus 405 ~~~~~ea~~~~~~~l~~~~~ 424 (425)
.....+|...++.+++..|.
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 55788888888888877654
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=4.4e-18 Score=167.63 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=168.8
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHhcc---cchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHH
Q psy1863 138 EINKAVTFLRM---NDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQ---------GEVEQAEKMAEEACTADTYNSAA 202 (425)
Q Consensus 138 ~~~~a~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 202 (425)
.+..|...+.. +.+++|+.+|++++ |.++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 34456544433 45789999999999 88999999999987643 34899999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777788899
Q ss_pred CHHHHHHHHHHHHHhcC-cchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 283 DVEQASDVNENLLLEAV-RNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 283 ~~~~A~~~~~~~a~~~~-p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
++++|+..+++ ++... |+++ +..++.+ +.++|...+.+.....|......
T Consensus 421 ~~eeA~~~~~~-~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 421 GIDDAIRLGDE-LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred CHHHHHHHHHH-HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence 99999999999 88775 6666 5666665 89999999998877766644433
No 28
>KOG0547|consensus
Probab=99.82 E-value=1.7e-18 Score=155.75 Aligned_cols=380 Identities=15% Similarity=0.099 Sum_probs=269.5
Q ss_pred HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcc-------hhhcccchh
Q psy1863 12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKN-------ARAVRNDAL 84 (425)
Q Consensus 12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~d~l 84 (425)
.....+|-+.+-.++.+|+|++|+..+.+|+++. |....-..|....|..+|.+++ .-.+..|=.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~ 183 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV 183 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH
Confidence 3556788899999999999999999999999988 5555567788888888887762 111111111
Q ss_pred HHHHHHHH--------HHH-----HHHHH----------------------Hhhhhh----hhchhh-hhhhhHHH-HHH
Q psy1863 85 SQLHREMK--------HEA-----EKCIL----------------------TSAKLI----APSIED-NFSNGYNW-CVQ 123 (425)
Q Consensus 85 ~~~~~~~~--------~~~-----~~~~~----------------------~~~~~~----~~~~~~-~~~~~~~~-~~~ 123 (425)
..+.++.. .++ ..+|. .+...+ .|.++. .|...|.- +..
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 11111000 000 00000 000000 122221 22222211 011
Q ss_pred HHHhcCCcc-hhhHHHHHHHHHHHHcC---CHHHHHHHHHhcc-------cch---------HHHHHHHHHHHHHcCCHH
Q psy1863 124 SIRNSAHSS-LAQDLEINKAVTFLRMN---DVSQAVDVLKSCD-------EMT---------SSAATNLSFIYFLQGEVE 183 (425)
Q Consensus 124 ~~~~~~~~~-~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~~-------~~~---------~~~~~~lg~~~~~~g~~~ 183 (425)
.+....... -.++..+.-+..++..+ .|..|...+.+.. ..+ +.++...|..++..|++-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 111111100 11233333344444444 7777777776654 222 678888899999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 184 QAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.|...|++++.++|.+...++.+|.+|....+.++-...|.++..++|+++.+|+..|.+++-++++++|+..|++++++
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863 264 VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN 336 (425)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~ 336 (425)
+|++..++.+++.+.++++.++++...|+. +.+..|+.+ +...+.+ ++++|++.|.+++.+.|.........
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee-~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEE-AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999 999999998 6666666 99999999999999999844333332
Q ss_pred hHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHH
Q psy1863 337 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLE 416 (425)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~ 416 (425)
+ +-++-.+.... -.+++.+|+++++++.++.|....-...+.-+ .++....++|+++++
T Consensus 503 ~-----------------plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~---~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 503 A-----------------PLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQF---ELQRGKIDEAIELFE 561 (606)
T ss_pred h-----------------hhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHH---HHHHhhHHHHHHHHH
Confidence 2 11111122222 23999999999999988887765544443333 455557889999999
Q ss_pred hHhHH
Q psy1863 417 NLLTV 421 (425)
Q Consensus 417 ~~l~~ 421 (425)
+...+
T Consensus 562 ksa~l 566 (606)
T KOG0547|consen 562 KSAQL 566 (606)
T ss_pred HHHHH
Confidence 88754
No 29
>KOG1173|consensus
Probab=99.82 E-value=4.6e-18 Score=155.79 Aligned_cols=280 Identities=16% Similarity=0.108 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCccc-ccchhcchhhhhcchhhcccc
Q psy1863 4 PEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH-NIELTFSNINRKKNARAVRND 82 (425)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d 82 (425)
|++++-.+++..+=|.+.|-.+..+++|++-++...+.++.+ |++..... .++ .+...|.-.
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--------pfh~~~~~~~ia-~l~el~~~n-------- 295 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--------PFHLPCLPLHIA-CLYELGKSN-------- 295 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--------CCCcchHHHHHH-HHHHhcccc--------
Confidence 345666677778888999999999999999999998888877 66543321 111 222222211
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 83 ALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
..+..+-++. .. + |..+-.|+..|..|+..|++++|..+|.++.
T Consensus 296 --------------~Lf~lsh~LV-------------------~~--y-P~~a~sW~aVg~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 296 --------------KLFLLSHKLV-------------------DL--Y-PSKALSWFAVGCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred --------------hHHHHHHHHH-------------------Hh--C-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence 0111111111 11 1 1122334788999999999999999999998
Q ss_pred ---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 163 ---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 163 ---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
|..+.+|...|..+...|+.++|+..|..|-++-|........+|.-|...+.+..|.++|.+|+.+.|++|-++..
T Consensus 340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 88899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVP-------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
+|.+.+..+.|.+|..+|+.++..-+ .....+.+||.++.+++.+++|+.+|++ ++.+.|.++ +..+|.+
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~-aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK-ALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH-HHHcCCCchhHHHHHHHH
Confidence 99999999999999999999984432 1345689999999999999999999999 999999998 7777777
Q ss_pred -----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 311 -----MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 311 -----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
+.+.|+++|.+++-+.|.+.-..-.++
T Consensus 499 y~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999999865544443
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=9.2e-18 Score=137.68 Aligned_cols=197 Identities=18% Similarity=0.099 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
..+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.++++|.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863 246 HLNEYSDSLECFHKLQAI--VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE 316 (425)
Q Consensus 246 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~ 316 (425)
.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|..+|++ +++.+|+++ ...++.. ++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r-aL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR-ALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH-HHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999864 345678999999999999999999999999 999999998 5555554 778888
Q ss_pred HHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863 317 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 388 (425)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 388 (425)
.++++.....+.... ...+| ..+-...|+-+.|-.+=.+..+..|..
T Consensus 194 ~~~~~~~~~~~~~A~-sL~L~------------------------iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAE-SLLLG------------------------IRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHH-HHHHH------------------------HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 888777666553222 22222 233445677777777666665444443
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=5.2e-17 Score=166.01 Aligned_cols=323 Identities=12% Similarity=-0.020 Sum_probs=215.3
Q ss_pred HHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHH
Q psy1863 17 GLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAE 96 (425)
Q Consensus 17 ~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 96 (425)
.+...|..+...|++++|++.+++++.++ |........++.++...|++. ++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~l~~~g~~~-------------------eA~ 103 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLE--------PQNDDYQRGLILTLADAGQYD-------------------EAL 103 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-------------------HHH
Confidence 36777888999999999999999999877 655555556666666655544 121
Q ss_pred HHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHH
Q psy1863 97 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLS 173 (425)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg 173 (425)
..+..+. .. . +.... +..+|.++...|++++|+..+++++ |.++.++..+|
T Consensus 104 ~~l~~~l----------------------~~--~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 104 VKAKQLV----------------------SG--A-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHH----------------------Hh--C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2111111 11 0 11122 4555666666666666666666666 66666666666
Q ss_pred HHHHHcCCHHH----------------------------------------------HHHHHHHHHhcCCCCHH------
Q psy1863 174 FIYFLQGEVEQ----------------------------------------------AEKMAEEACTADTYNSA------ 201 (425)
Q Consensus 174 ~~~~~~g~~~~----------------------------------------------A~~~~~~al~~~p~~~~------ 201 (425)
.++...|..++ |+..++.+++..|.++.
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 66655555443 44445555544332221
Q ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q psy1863 202 -AFVNLGNCAMAREDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM----PEVLYQIA 275 (425)
Q Consensus 202 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 275 (425)
+.......+...|++++|+..|+++++..|.. ..+...+|.+|..+|++++|+..|++++...|.+ ......++
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 12221223467789999999999988876432 2233446889999999999999999988888765 35677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCcc-------------hH----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 276 SLYEITGDVEQASDVNENLLLEAVRN-------------DA----LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~a~~~~p~-------------~~----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
.++...|++++|+..+++ +....|. +. ...++.+ ++++|+..+++++...|.+....
T Consensus 318 ~a~~~~g~~~eA~~~l~~-~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAH-TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHH-HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 888899999999999999 8877662 11 2333333 88999999999999999998777
Q ss_pred hhchHHHHHHHhHH---------hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863 334 FSNGYNWCVQSIRN---------SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS 393 (425)
Q Consensus 334 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 393 (425)
...+......+... ....|....+++.+|.++...|++++|...++++.+..|.++....
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 76664333222221 2334445678888999999999999999999999888777765443
No 32
>KOG1155|consensus
Probab=99.81 E-value=1.1e-17 Score=149.75 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=151.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV 217 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 217 (425)
.|+.|...++.++|+.+|++++ |....+|..+|--|..+.+...|+..|++|++++|.+..+|+.+|..|..++-..
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 5778888999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
=|+-+|++++...|+++..|..||.||.++++.++|+.+|.+++.....+..++..||.+|.++++.++|..+|++ .++
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek-~v~ 494 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK-YVE 494 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999988899999999999999999999999999 776
Q ss_pred c
Q psy1863 298 A 298 (425)
Q Consensus 298 ~ 298 (425)
.
T Consensus 495 ~ 495 (559)
T KOG1155|consen 495 V 495 (559)
T ss_pred H
Confidence 4
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=2.7e-17 Score=144.30 Aligned_cols=195 Identities=16% Similarity=0.131 Sum_probs=173.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
...+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++.++|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKH 313 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~ 313 (425)
++...|++++|+..+++++... |.....+..+|.++...|++++|...+.+ ++..+|+++ +..++.+ +++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR-ALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999854 45677899999999999999999999999 999999887 6667766 899
Q ss_pred HHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863 314 EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE 383 (425)
Q Consensus 314 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 383 (425)
+|...++++++..|.... .+...+.++...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAE-------------------------SLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888554322 223456788889999999998877643
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=7.6e-19 Score=158.86 Aligned_cols=253 Identities=19% Similarity=0.160 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (425)
+.+|.+++..|++++|++++++.+ |.++..|..+|.+....|+++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 566999999999999999997654 67788999999999999999999999999999999999888888888 799
Q ss_pred cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
+++++|+.+++++.+..+ ++..+.....++...|+++++...++++.... |.++..+..+|.++...|++++|+.+|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988764 46777788888999999999999999977655 578889999999999999999999999
Q ss_pred HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHH
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVT 364 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 364 (425)
++ +++.+|+++ ...++.+ +.+++...+....+..|++ +.++..+|.+
T Consensus 170 ~~-al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-------------------------~~~~~~la~~ 223 (280)
T PF13429_consen 170 RK-ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-------------------------PDLWDALAAA 223 (280)
T ss_dssp HH-HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-------------------------CCHCHHHHHH
T ss_pred HH-HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-------------------------HHHHHHHHHH
Confidence 99 999999988 5556555 6666666666665555443 3455667889
Q ss_pred HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHh
Q psy1863 365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVL 422 (425)
Q Consensus 365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~ 422 (425)
|...|++++|+.+|+++.+..|.+|..+..+-. ........++|..+..+++..+
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~---~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD---ALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH---HHT-------------------
T ss_pred hcccccccccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence 999999999999999997777666554443333 2333447888888887777654
No 35
>KOG1129|consensus
Probab=99.80 E-value=8.7e-18 Score=144.12 Aligned_cols=225 Identities=16% Similarity=0.108 Sum_probs=206.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
...+|.+|++.|-+.+|.+.++..+ ...++.+..|+.+|.+..++..|+..+.+.++..|.+...+..++.++..+++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3578999999999999999999999 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a 295 (425)
+++|.++|+.+++.+|.+.++...+|.-|+-.++.+-|+.+|++.+++.-.+++.+.++|.|+..-++++-++..|++ +
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R-A 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR-A 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HhcCc--chH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHH
Q psy1863 296 LEAVR--NDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTF 365 (425)
Q Consensus 296 ~~~~p--~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 365 (425)
+.... +.. |+++|.+ +..-|..+|+-++..++++.+ ...++|.+-
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e-------------------------alnNLavL~ 439 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE-------------------------ALNNLAVLA 439 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH-------------------------HHHhHHHHH
Confidence 87643 332 9999998 999999999999988877643 455667888
Q ss_pred HhcCCHHHHHHHHHHHHhhccCC
Q psy1863 366 LRMNDVSQAVDVLKSCDEMTSSA 388 (425)
Q Consensus 366 ~~~g~~~~A~~~~~~~~~~~~~~ 388 (425)
.+.|++++|..++..+.+..|..
T Consensus 440 ~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hhcCchHHHHHHHHHhhhhCccc
Confidence 89999999999999996666544
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=1.2e-16 Score=157.45 Aligned_cols=190 Identities=13% Similarity=0.022 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHH---------cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy1863 135 QDLEINKAVTFLR---------MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202 (425)
Q Consensus 135 ~~~~~~~a~~~~~---------~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (425)
...+..+|.++.. .+++++|+..+++++ |.++.++..+|.++...|++++|+..|+++++++|+++.+
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI 374 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 3445666666543 345899999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQIASLYEIT 281 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 281 (425)
++.+|.++...|++++|+..++++++++|.++.++..++.++...|++++|+..+++++... |+++.++..+|.++..+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998887777878888999999999999999885 78899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcchH--HHHHHHh---hHHHHHHHHHHHHhh
Q psy1863 282 GDVEQASDVNENLLLEAVRNDA--LSQLHRE---MKHEAEKCILTSAKL 325 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---~~~~A~~~~~~a~~~ 325 (425)
|++++|...+.+ .....|.+. ...++.. .-++|...+++.++.
T Consensus 455 G~~~eA~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~ 502 (553)
T PRK12370 455 GKHELARKLTKE-ISTQEITGLIAVNLLYAEYCQNSERALPTIREFLES 502 (553)
T ss_pred CCHHHHHHHHHH-hhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999 888877766 4444433 334566656555443
No 37
>KOG1125|consensus
Probab=99.78 E-value=1.3e-17 Score=153.41 Aligned_cols=223 Identities=15% Similarity=0.155 Sum_probs=188.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
+..|..+++.|++.+|.-+|+.++ |.+.++|..||.+....++-..|+..++++++++|+|..++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 678999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYN-------LGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 286 (425)
-.+|++++.+.+...|.....-.. ...-......+..-.+.|..+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887653221110 00001111223444566777777788 789999999999999999999
Q ss_pred HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHH
Q psy1863 287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 359 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (425)
|+.+|+. |+...|+|. |..||.. +..+|+..|.+|+++.|..+..+ +
T Consensus 449 aiDcf~~-AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-------------------------y 502 (579)
T KOG1125|consen 449 AVDCFEA-ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-------------------------Y 502 (579)
T ss_pred HHHHHHH-HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-------------------------h
Confidence 9999999 999999999 9999998 89999999999999999876544 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863 360 NKAVTFLRMNDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~ 387 (425)
++|.++...|.|++|+.+|-.+..+.+.
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 5568888899999999988888755543
No 38
>KOG1840|consensus
Probab=99.78 E-value=5.2e-17 Score=153.17 Aligned_cols=233 Identities=18% Similarity=0.200 Sum_probs=186.4
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD---- 196 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 196 (425)
+........+|..|..+|+|+.|+..++.++ +.-......+|.+|..++++.+|+..|++|+.+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3344445569999999999999999999998 3334455679999999999999999999999873
Q ss_pred ----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863 197 ----TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 197 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 264 (425)
|..+.++.+||..|...|++++|..++++++.+ .|.-+..+.+++.++..++++++|..++++++++.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 445577999999999999999999999999987 33446678899999999999999999999998863
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc-----hH-----HHHHHHh-----hHHHHHHHHHH
Q psy1863 265 --------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN-----DA-----LSQLHRE-----MKHEAEKCILT 321 (425)
Q Consensus 265 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~-----~~-----~~~l~~~-----~~~~A~~~~~~ 321 (425)
|..+..+.++|.+|..+|++++|.++|++ ++.+... +. +.+++.. ++.+|...|.+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~-ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK-AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23456889999999999999999999999 9887421 11 5666655 67778888887
Q ss_pred HHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863 322 SAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE 383 (425)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 383 (425)
+..+. ......+ +-....+.+++.+|..+|++++|+++...+.+
T Consensus 435 ~~~i~-~~~g~~~-----------------~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIM-KLCGPDH-----------------PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHH-HHhCCCC-----------------CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77665 2222211 11234677899999999999999999999863
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=3e-16 Score=142.33 Aligned_cols=193 Identities=10% Similarity=-0.032 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
....++.+|.++...|++++|+..|++++ |..+.+++.+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35667899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--H
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA--S 288 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A--~ 288 (425)
...|++++|+..|+++++.+|+++..... ..+....+++++|+..+.++....+.. .|. .+.++..+|+...+ .
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLM 218 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHH
Confidence 99999999999999999999998742221 223456789999999998877554322 222 35555667766443 3
Q ss_pred HHHHH---HHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCch
Q psy1863 289 DVNEN---LLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSI 330 (425)
Q Consensus 289 ~~~~~---~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~ 330 (425)
..+.+ ...++.|..+ +..+|.. ++++|+.+|++++..+|.+.
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 22222 0224444544 8888888 99999999999999997543
No 40
>KOG1174|consensus
Probab=99.76 E-value=7e-16 Score=136.40 Aligned_cols=267 Identities=14% Similarity=0.107 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
..+...+|.+++..|++++|+..|+++. |....+.-..|.++...|++++-.......+........-|+--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4455667777777777777777777776 6666677777777777777777777777777777667777888888888
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
..+++..|+.+-+++++.+|.+..++...|.++..+|+.++|+-.|+.+..+.|...++|..|..+|...|.+.+|...-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcchH--HHHHHHh-------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhch-------hh-h
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE-------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHS-------SL-A 354 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~ 354 (425)
.. ++...|.+. +.-+|.. ..++|..++++++++.|.........+-....++....... .+ .
T Consensus 392 n~-~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 392 NW-TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred HH-HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 99 999999988 6667633 77899999999999999998877766533333332222221 11 3
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhc
Q psy1863 355 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSE 402 (425)
Q Consensus 355 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 402 (425)
..++..+|.++...+.+++|.+.|..+.++.|.+...+.-+..++-+.
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 467788999999999999999999999888887777777666664443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=7.9e-18 Score=152.22 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=69.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY 216 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 216 (425)
..++...++++++...+.++. +.++..|..+|.++...|++++|+..++++++.+|+++.+...++.++...|++
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence 344455555555555555533 334455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+++...++......|+++..+..+|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|..++++
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55555555555544555555555555555555555555555555555555555555555555555555555555554
No 42
>KOG0624|consensus
Probab=99.76 E-value=3e-15 Score=129.51 Aligned_cols=247 Identities=16% Similarity=0.107 Sum_probs=120.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H-----------
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---A----------- 202 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~----------- 202 (425)
..|.+|+.+|+-.-|+.-+.+++ |+...+....|.+++.+|++++|..-|+.++..+|++.. +
T Consensus 77 rRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 77 RRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence 34445555555555555555554 444455555555555555555555555555555553321 1
Q ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863 203 -FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281 (425)
Q Consensus 203 -~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (425)
+......++..|+...|+.+..+.+++.|=++..+...+.||...|+...|+..++.+-++..++.+.++.++.+++..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 1122223334455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhcCcchH-----HHHHHHh--------------hHHHHHHHHHHHHhhcCCchhhHhhch-----
Q psy1863 282 GDVEQASDVNENLLLEAVRNDA-----LSQLHRE--------------MKHEAEKCILTSAKLIAPSIEDNFSNG----- 337 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~~~-----~~~l~~~--------------~~~~A~~~~~~a~~~~~~~~~~~~~~~----- 337 (425)
|+.+.++...++ +++++|++. +..+-.+ ++.+++...++.++..|.........-
T Consensus 237 gd~~~sL~~iRE-CLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 237 GDAENSLKEIRE-CLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hhHHHHHHHHHH-HHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 555555555555 555555544 2222111 333444444444444444222111100
Q ss_pred -------HHHHHHHhH-HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863 338 -------YNWCVQSIR-NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 338 -------~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 387 (425)
+...+.... -....+....+....|..|+-...|+.||..|+++....++
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 000111111 12222333455666777888888888888888887654443
No 43
>KOG0550|consensus
Probab=99.75 E-value=3.1e-16 Score=138.69 Aligned_cols=278 Identities=15% Similarity=0.100 Sum_probs=213.2
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcc-----hhhcccc---hhHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKN-----ARAVRND---ALSQ 86 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~d---~l~~ 86 (425)
..++-+.+-..+.+.+|.+|+..+..|++.. |.....+.+-..++...|++.. .+.+..+ .-.+
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence 4567788888999999999999999999988 6666677777888888888761 1111111 1111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c
Q psy1863 87 LHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---E 163 (425)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~ 163 (425)
....+...+...++.+...+...-......++..+...+......+.+....+..+.++...|++++|+..--..+ +
T Consensus 121 ~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 121 LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 2222223333333333322211111111222333333333333345556666888999999999999998877777 8
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA------------AFVNLGNCAMAREDYVKGKELYVHALDNDA 231 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (425)
.+..+++..|.+++..++.+.|+.+|++++.++|+... .+-.-|+-.++.|+|.+|.++|..+|.++|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 88999999999999999999999999999999998753 366779999999999999999999999999
Q ss_pred Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863 232 TC----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 232 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~ 301 (425)
++ +..|.++|.+..++|+..+|+..++.++.++|....++...|.|+..++++++|++.|++ +.+...+
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~-a~q~~~s 353 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK-AMQLEKD 353 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccc
Confidence 86 567899999999999999999999999999999999999999999999999999999999 9988766
No 44
>KOG2003|consensus
Probab=99.74 E-value=6.5e-16 Score=138.15 Aligned_cols=196 Identities=16% Similarity=0.058 Sum_probs=177.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
..+.|.+.+..|++++|.+.|++++ ..-..+++++|..+..+|+.++|+.+|-+.-.+-.++..+++.++.+|..+.
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4677889999999999999999999 4556789999999999999999999999988888899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
+..+|++.+.++..+-|+++.++..||.+|-+.|+-.+|..++-...+..|.+..+...||..|....-+++|+.+|++
T Consensus 573 d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek- 651 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK- 651 (840)
T ss_pred CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcchH-HHHH-HHh-----hHHHHHHHHHHHHhhcCCchhhHh
Q psy1863 295 LLEAVRNDA-LSQL-HRE-----MKHEAEKCILTSAKLIAPSIEDNF 334 (425)
Q Consensus 295 a~~~~p~~~-~~~l-~~~-----~~~~A~~~~~~a~~~~~~~~~~~~ 334 (425)
+.-+.|+-. |..+ +.+ ++++|.+.|+...+.+|.+.+...
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 988999888 5543 333 999999999999999999877543
No 45
>KOG0624|consensus
Probab=99.73 E-value=7.4e-15 Score=127.12 Aligned_cols=286 Identities=10% Similarity=0.046 Sum_probs=224.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
..+-.+.+|..++..|++..|+..|..++ |.+..+++..|.+|+.+|+-.-|+.-+.+++++.|+...+....|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34456899999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCc---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATC---IEAL------------YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~---~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
+++|++++|...|.+++..+|++ .++. ......+...|+...|+....+.+++.|=+...+...+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 99999999999999999999965 2222 23344456679999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch-----------
Q psy1863 276 SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG----------- 337 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~----------- 337 (425)
.||...|++..|+..++. +.++..++. ++.++.+ +...++...+++++++|+.-...-..-
T Consensus 197 kc~i~~~e~k~AI~Dlk~-askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQ-ASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHhcCcHHHHHHHHHH-HHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999887777 6666665 888999999999999998754221110
Q ss_pred ---------HHHHHHHh-HHhhchhhhc----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhcc
Q psy1863 338 ---------YNWCVQSI-RNSAHSSLAQ----DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEF 403 (425)
Q Consensus 338 ---------~~~~~~~~-~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 403 (425)
|..|.... ......+-.. ...-.+..|+...|++-+|+...+++.... |++...+.---...+
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID---PDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHHh
Confidence 11111110 0011111111 122237889999999999999999985555 555555544434455
Q ss_pred CcCCCCcHHHHHHhHhHHhh
Q psy1863 404 QYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 404 ~~~~~~ea~~~~~~~l~~~~ 423 (425)
+...+++|+.=++++++..+
T Consensus 353 ~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCc
Confidence 66667788888888776543
No 46
>KOG0495|consensus
Probab=99.73 E-value=9e-15 Score=136.33 Aligned_cols=281 Identities=14% Similarity=0.069 Sum_probs=204.0
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.+..+++..+..+...|+...|..++.++. |.+.+.|..--.+.+...+++.|..+|.++....| ...+|+.-+..
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~ 660 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANL 660 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHH
Confidence 345566777777788888888888888877 77778888888888888888888888888877554 56777777777
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
...+++.++|+.+++.+++..|+....|..+|.++.++++.+.|...|...++.-|+.+..|..++.+-...|+.-.|..
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh-----hcHH
Q psy1863 290 VNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL-----AQDL 357 (425)
Q Consensus 290 ~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 357 (425)
.+.+ +.-.+|.+. |....++ +.+.|.....++++..|++-..|...-+..-.-..+....+.+ .+-+
T Consensus 741 ildr-arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphV 819 (913)
T KOG0495|consen 741 ILDR-ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHV 819 (913)
T ss_pred HHHH-HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchh
Confidence 8888 888888888 3333333 7788888888888888877543332211000001111111111 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhH
Q psy1863 358 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENL 418 (425)
Q Consensus 358 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~ 418 (425)
.+..|..+....++++|.++|.++.+..++..+.-.++|-. ++......+..+.+.+.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf---el~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF---ELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH---HHHhCCHHHHHHHHHHH
Confidence 67788999999999999999999988887777766555543 33332344444555443
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=6.9e-16 Score=135.91 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=149.2
Q ss_pred cchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q psy1863 131 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS---SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA--- 201 (425)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 201 (425)
.....+.++.+|..++..|++++|+..|++++ |.++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34567788999999999999999999999988 5443 68899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCcCcHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q psy1863 202 AFVNLGNCAMAR--------EDYVKGKELYVHALDNDATCIEAL-----------------YNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 202 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~g~~~~A~~~ 256 (425)
+++.+|.++... |++++|+..|++++..+|++..++ ..+|.++...|++.+|+..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 689999999876 899999999999999999885432 3678899999999999999
Q ss_pred HHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863 257 FHKLQAIVPSM---PEVLYQIASLYEITGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 257 ~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p 300 (425)
+++++...|+. +.+++.+|.++..+|++++|..+++. .....|
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~-l~~~~~ 234 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV-LGANYP 234 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCC
Confidence 99999997764 57999999999999999999999988 665555
No 48
>KOG0548|consensus
Probab=99.73 E-value=3.5e-15 Score=136.52 Aligned_cols=328 Identities=16% Similarity=0.149 Sum_probs=218.0
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHE 94 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 94 (425)
+..+.+++-...+.|+|+.|+..|-+|+.++ |.+-.-..|-...|...|.+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~--------p~nhvlySnrsaa~a~~~~~~-------------------- 53 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLS--------PTNHVLYSNRSAAYASLGSYE-------------------- 53 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccC--------CCccchhcchHHHHHHHhhHH--------------------
Confidence 3567788999999999999999999999988 555334444444555545433
Q ss_pred HHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHH
Q psy1863 95 AEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATN 171 (425)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 171 (425)
..+..+.+.+ .+.++|..|| ..+|..++-.|+|++|+..|.+.+ |.+.....+
T Consensus 54 --~al~da~k~~--~l~p~w~kgy--------------------~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~g 109 (539)
T KOG0548|consen 54 --KALKDATKTR--RLNPDWAKGY--------------------SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTG 109 (539)
T ss_pred --HHHHHHHHHH--hcCCchhhHH--------------------HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHh
Confidence 2233333332 4567787777 678999999999999999999998 778777777
Q ss_pred HHHHHHHcC-----------------C-------HHHHHHHHHHHHhcC-------------------------------
Q psy1863 172 LSFIYFLQG-----------------E-------VEQAEKMAEEACTAD------------------------------- 196 (425)
Q Consensus 172 lg~~~~~~g-----------------~-------~~~A~~~~~~al~~~------------------------------- 196 (425)
++.++...- + .+.+.....+.+..+
T Consensus 110 l~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~ 189 (539)
T KOG0548|consen 110 LAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYAS 189 (539)
T ss_pred HHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccc
Confidence 777762220 0 001111111111110
Q ss_pred ----------CC------------C---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 197 ----------TY------------N---------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 197 ----------p~------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
|. . ......+|+......+++.|++.|..++.++ .+...+.+.+.+|+
T Consensus 190 ~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~ 268 (539)
T KOG0548|consen 190 GIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYL 268 (539)
T ss_pred ccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHH
Confidence 10 0 1225678888888888999999999999888 77777888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc------------------
Q psy1863 246 HLNEYSDSLECFHKLQAIVPSM-------PEVLYQIASLYEITGDVEQASDVNENLLLEAVR------------------ 300 (425)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p------------------ 300 (425)
..|.+.+.+..+.++++..... ..+...+|..|...++++.|+.+|.+ ++....
T Consensus 269 e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k-aLte~Rt~~~ls~lk~~Ek~~k~~ 347 (539)
T KOG0548|consen 269 ERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK-ALTEHRTPDLLSKLKEAEKALKEA 347 (539)
T ss_pred hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH-HhhhhcCHHHHHHHHHHHHHHHHH
Confidence 8888888888888877665421 22344577788888888888888887 665422
Q ss_pred --------chH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH---------HhhchhhhcH
Q psy1863 301 --------NDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR---------NSAHSSLAQD 356 (425)
Q Consensus 301 --------~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 356 (425)
.-. ...-|.. ++..|+..|.++++.+|++...+.+.+..+..-+.. .....+-...
T Consensus 348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 111 1222222 888888888888888888777666555433322111 1223334456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHH
Q psy1863 357 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIY 396 (425)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 396 (425)
.++..|.++..+.+|++|++.|.++....|....-+..+.
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR 467 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 6778899999999999999999999777765554444333
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=3e-14 Score=135.54 Aligned_cols=256 Identities=12% Similarity=0.049 Sum_probs=167.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTS-SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
+..|.++..+|+++.|..++.++. |... .+....+.++...|++++|...+++.++..|+++.++..++.++...|
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 455777888888888888888876 4443 344556888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEAL----YNLGLAHKHLNEYSDSLECFHKLQAIVP----SMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~ 286 (425)
++++|.+.+.+..+..+.++... .....-....+..+++.+.+.++....| +++..+..++..+...|++++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 88888888888887643332222 1222222344455555667777777777 478888888888888888888
Q ss_pred HHHHHHHHHHhcCcchH-H--HHH---HHh---hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHH
Q psy1863 287 ASDVNENLLLEAVRNDA-L--SQL---HRE---MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 357 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~-~--~~l---~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (425)
|...+++ +++..|++. . ..+ ..+ +...+...++++++..|++... .+
T Consensus 282 A~~~l~~-~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~-----------------------~l 337 (409)
T TIGR00540 282 AQEIIFD-GLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC-----------------------CI 337 (409)
T ss_pred HHHHHHH-HHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH-----------------------HH
Confidence 8888888 888888776 1 122 122 5566777777777777766521 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH--HHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHh
Q psy1863 358 EINKAVTFLRMNDVSQAVDVLKS--CDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVL 422 (425)
Q Consensus 358 ~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~ 422 (425)
...+|.++++.|++++|.+.|++ ..+..|+... .. .+..-.......++|..++.+.+..+
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~---~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LA---MAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33456666777777777777773 3223332222 11 11111222235666667776665544
No 50
>KOG2076|consensus
Probab=99.73 E-value=4.6e-15 Score=143.17 Aligned_cols=294 Identities=13% Similarity=0.069 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHRE 90 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~ 90 (425)
+...+.+|+.+|-.++-+|++++|.+.+.++++.+ |....+...|+..|.+.|++.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--------p~~~~ay~tL~~IyEqrGd~e---------------- 190 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD--------PRNPIAYYTLGEIYEQRGDIE---------------- 190 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------ccchhhHHHHHHHHHHcccHH----------------
Confidence 44558999999999999999999999999999877 888888899999999988754
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH
Q psy1863 91 MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS 167 (425)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~ 167 (425)
.+..+.+.++-+ .+-..+.|..++.....+|++.+|+-+|.+++ |.+..
T Consensus 191 ---K~l~~~llAAHL-------------------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 191 ---KALNFWLLAAHL-------------------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred ---HHHHHHHHHHhc-------------------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 122222222211 11223667788888889999999999999998 88888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--CcHHHHHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----AAFVNLGNCAMAREDYVKGKELYVHALDNDA--TCIEALYNL 240 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l 240 (425)
.....+.+|.+.|+...|...|.+++...|... ......+..+...++-+.|++.++.++.... .....+..+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 888899999999999999999999999888321 2234446667777777888888888777321 112233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----------------------------------------------------------
Q psy1863 241 GLAHKHLNEYSDSLECFHKLQA---------------------------------------------------------- 262 (425)
Q Consensus 241 a~~~~~~g~~~~A~~~~~~al~---------------------------------------------------------- 262 (425)
+.++.....++.|.......-.
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 5555555555555444433322
Q ss_pred -----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCC
Q psy1863 263 -----IVP-SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 263 -----~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~ 328 (425)
..| +.++.+..++.++...|++.+|+.+|.. +....+... |..+|.+ .+++|+.+|.+++...|.
T Consensus 403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~-i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP-ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 112 3456778888888888999999998888 666554433 8888888 888899999999988888
Q ss_pred chhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 329 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
+.+ +.+.++.++...|++++|++++....
T Consensus 482 ~~D-------------------------~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 482 NLD-------------------------ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred chh-------------------------hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 765 44556899999999999999999864
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.72 E-value=4.2e-16 Score=125.18 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=96.5
Q ss_pred HHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH
Q psy1863 156 DVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235 (425)
Q Consensus 156 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (425)
.++++++..+|..+..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 34555554444456677888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
+++++|.++..+|++++|+..|.+++...|+++..+.++|.+...
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888888888888888888888877777766544
No 52
>KOG1129|consensus
Probab=99.71 E-value=1.2e-15 Score=131.07 Aligned_cols=255 Identities=15% Similarity=0.079 Sum_probs=212.8
Q ss_pred HHHHHcCCHHHHHHHHHhcc-------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD-------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.+++..+|...|-......+ ..+......+|.||+..|.+.+|.+.++.+++..| .++.+..|+.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 34556666666664443333 22334446899999999999999999999998877 67888999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
|.+..+...|+..+.+.+...|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|..-++++-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHH
Q psy1863 290 VNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKA 362 (425)
Q Consensus 290 ~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 362 (425)
+|++ .+++.-.++ +.++|.+ +++-++..|++++...... ....++|++++
T Consensus 346 yYRR-iLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----------------------~~aaDvWYNlg 402 (478)
T KOG1129|consen 346 YYRR-ILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----------------------GQAADVWYNLG 402 (478)
T ss_pred HHHH-HHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----------------------chhhhhhhccc
Confidence 9999 999998888 7888887 8888899999888765422 12357899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863 363 VTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQY 424 (425)
Q Consensus 363 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~ 424 (425)
.+....|++.-|..+|+-+. ..++++-..+..|..-..+.....+|-.+++.+-.+.|+
T Consensus 403 ~vaV~iGD~nlA~rcfrlaL---~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 403 FVAVTIGDFNLAKRCFRLAL---TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred eeEEeccchHHHHHHHHHHh---ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99999999999999999984 444444444444444456666889999999988877765
No 53
>KOG2076|consensus
Probab=99.71 E-value=1.3e-14 Score=140.06 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
..-.+..|+.++..|++++|..++.+++ |..+.+|+.||.+|..+|+.+++....-.|--++|.+...|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3445677889999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-----EVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 286 (425)
++|.+++|+-+|.+|++.+|.+....+..+.+|.++|+...|+..|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999322 234556777888888899
Q ss_pred HHHHHHHHHHhcCcchH----HHHHHHh-----hHHHHHHHHHHHHh
Q psy1863 287 ASDVNENLLLEAVRNDA----LSQLHRE-----MKHEAEKCILTSAK 324 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~----~~~l~~~-----~~~~A~~~~~~a~~ 324 (425)
|++.+.. ++....+-. +.-++.+ .++.+.........
T Consensus 299 a~~~le~-~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 299 AAKALEG-ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHH-HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 9999999 887322211 3333333 55666555544433
No 54
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=8.7e-15 Score=132.47 Aligned_cols=189 Identities=13% Similarity=0.024 Sum_probs=165.5
Q ss_pred HHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH--H
Q psy1863 144 TFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY--V 217 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~ 217 (425)
++...++.++|+..+.+++ |.+..+|...|.++..+| ++++++..+++++..+|++..+|+..+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 4566789999999999999 999999999999999998 689999999999999999999999999999988874 7
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HHHHHH
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT---GDV----EQASDV 290 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~ 290 (425)
+++.++.++++.+|.+..+|.+.|.++...|++++|++++.++++.+|.+..+|+..+.+...+ |.+ ++++.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999998776 333 578888
Q ss_pred HHHHHHhcCcchH--HHHHHHh---------hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 291 NENLLLEAVRNDA--LSQLHRE---------MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 291 ~~~~a~~~~p~~~--~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
..+ ++..+|++. |..++.+ ...+|...+.++++..|.+....
T Consensus 206 ~~~-aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 206 TID-AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHH-HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 889 999999998 7666665 23457777888777666655433
No 55
>KOG1174|consensus
Probab=99.71 E-value=2.5e-15 Score=132.99 Aligned_cols=270 Identities=11% Similarity=0.005 Sum_probs=217.2
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK 92 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 92 (425)
-.++-|.+-|.++...|++++|...|.++..++ |.++...-.-+...+.-|++. .+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--------py~i~~MD~Ya~LL~~eg~~e--------~~~------- 286 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--------PDNVEAMDLYAVLLGQEGGCE--------QDS------- 286 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--------hhhhhhHHHHHHHHHhccCHh--------hHH-------
Confidence 446778999999999999999999998887777 333222222222333333332 000
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHH
Q psy1863 93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAA 169 (425)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 169 (425)
.... .++ . .......-++.-+...+..+++..|+.+-.+++ +.+..++
T Consensus 287 -~L~~------~Lf----------------~------~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~al 337 (564)
T KOG1174|consen 287 -ALMD------YLF----------------A------KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEAL 337 (564)
T ss_pred -HHHH------HHH----------------h------hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHH
Confidence 0000 010 0 000122233555778888999999999999999 8889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHH-Hc
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG-LAHK-HL 247 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~ 247 (425)
...|.++...|+.++|+-.|+.|..+.|....+|-.+..+|...|++.+|....+.++..-|.++.++..+| .++. .-
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4444 33
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh-----hHHHHHHHHHH
Q psy1863 248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE-----MKHEAEKCILT 321 (425)
Q Consensus 248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~-----~~~~A~~~~~~ 321 (425)
.--++|.+.+++++++.|....+...++.++...|.++.++..+++ .+...|+.. ...||.+ .+++|.++|..
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~-~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK-HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH-HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4458999999999999999999999999999999999999999999 999999999 7788887 89999999999
Q ss_pred HHhhcCCchhhHhh
Q psy1863 322 SAKLIAPSIEDNFS 335 (425)
Q Consensus 322 a~~~~~~~~~~~~~ 335 (425)
+++++|.+......
T Consensus 497 ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 497 ALRQDPKSKRTLRG 510 (564)
T ss_pred HHhcCccchHHHHH
Confidence 99999998765443
No 56
>KOG1840|consensus
Probab=99.71 E-value=1.2e-15 Score=144.15 Aligned_cols=249 Identities=17% Similarity=0.201 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHH
Q psy1863 12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREM 91 (425)
Q Consensus 12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 91 (425)
+..+..+..-|..+..+|+|+.|...++.|+..-....+...+.-.....+++..|.+.+++.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~----------------- 258 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD----------------- 258 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH-----------------
Confidence 344566777889999999999999999999886211111000000000112444444444433
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------
Q psy1863 92 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--------- 162 (425)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--------- 162 (425)
++...+..+..+. +.+.. ...+..+..+.++|..|...|+|++|..++++++
T Consensus 259 --eAv~ly~~AL~i~----------------e~~~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 259 --EAVNLYEEALTIR----------------EEVFG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred --HHHHHHHHHHHHH----------------HHhcC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 2222222221111 00001 2234456667899999999999999999999987
Q ss_pred --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Q psy1863 163 --EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDND-- 230 (425)
Q Consensus 163 --~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 230 (425)
+.-+..+.+++.++..++++++|..++.+++++. |..+..+.++|.+|..+|++++|.++|++++++.
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 4556678889999999999999999999998763 2345679999999999999999999999999873
Q ss_pred ------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 231 ------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-------PSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 231 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
+.....+.++|..|.+.+++++|...|.++..+. |+....+.+|+.+|..+|+++.|+++..+ ++.
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~-~~~ 478 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK-VLN 478 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH-HHH
Confidence 3346678899999999999999999999988763 34556889999999999999999999988 663
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=2.4e-14 Score=135.50 Aligned_cols=254 Identities=12% Similarity=0.033 Sum_probs=143.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhc
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNL-SFIYFLQGEVEQAEKMAEEACTADTYNSAA-FVNLGNCAMARE 214 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g 214 (425)
+..|...+..|++++|.+.+.+.. .+.+..++.+ +......|+++.|..++.++.+.+|++... ....+.++...|
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 444556666666666666555543 2233444433 333366666666666666666666665422 233366666666
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------------------------
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP----------------------------- 265 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------------------------- 265 (425)
++++|...++++.+..|+++.++..++.+|...|++++|+..+.+..+..+
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 666666666666666666666666666666666666666655555554433
Q ss_pred -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh---hHHHHHHHHHHHHhhcCC
Q psy1863 266 -------------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE---MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 266 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~---~~~~A~~~~~~a~~~~~~ 328 (425)
+++.+...++..+...|+.++|...+++ +++..|+.. ....+.+ +.+++....++.++..|+
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~-~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD-GLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 3444444445555555555555555555 444322222 2222222 444444444444444444
Q ss_pred chhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCC
Q psy1863 329 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPT 408 (425)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 408 (425)
+ +.+.+.+|.++...|++++|.+.|+++.+..|+.+..+..... -...| ..
T Consensus 327 ~-------------------------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~--~~~~g--~~ 377 (398)
T PRK10747 327 T-------------------------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADA--LDRLH--KP 377 (398)
T ss_pred C-------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcC--CH
Confidence 4 4566667888888888888888888886666544332222222 22333 67
Q ss_pred CcHHHHHHhHhHHh
Q psy1863 409 SEVPIYLENLLTVL 422 (425)
Q Consensus 409 ~ea~~~~~~~l~~~ 422 (425)
+++..++.+.+...
T Consensus 378 ~~A~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhhh
Confidence 78888888877643
No 58
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=7.3e-16 Score=123.81 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
...++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++.++|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56899999999885 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
+++.+++++|.++..+|++++|+..|++ ++...|+++ +...+.+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~-Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQT-AIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999 999999998 5555443
No 59
>KOG1125|consensus
Probab=99.69 E-value=1.8e-15 Score=139.57 Aligned_cols=230 Identities=13% Similarity=0.126 Sum_probs=170.2
Q ss_pred HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863 19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC 98 (425)
Q Consensus 19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~ 98 (425)
.+.|+.+..+|+..+|.=.|..|++.+ |....++.-||++-..-+. ...+...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqd--------P~haeAW~~LG~~qaENE~-------------------E~~ai~A 341 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQD--------PQHAEAWQKLGITQAENEN-------------------EQNAISA 341 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhC--------hHHHHHHHHhhhHhhhccc-------------------hHHHHHH
Confidence 467888889999999998888888877 6666666666766654221 1112222
Q ss_pred HHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHH----
Q psy1863 99 ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLS---- 173 (425)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg---- 173 (425)
+..+.++ .+-..++.+.+|..|...|.-.+|..++.+.+ ...+..+...+
T Consensus 342 L~rcl~L-------------------------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 342 LRRCLEL-------------------------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHhc-------------------------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 2222211 22345667888899999998889999888887 11111111110
Q ss_pred -----HHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 174 -----FIYFLQGEVEQAEKMAEEACTADT--YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 174 -----~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
........+..-.+.|-.+....| .++++...||.+|...|+|++|+.+|+.||...|++...|+.||-.+..
T Consensus 397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 011111223445566777777777 6889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863 247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~ 301 (425)
..+.++|+..|.+|+++.|....+++++|.+++.+|.|++|+.+|-. ++.+.+.
T Consensus 477 ~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~-AL~mq~k 530 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE-ALSMQRK 530 (579)
T ss_pred CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH-HHHhhhc
Confidence 99999999999999999999999999999999999999999999999 8887654
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=1.6e-13 Score=138.58 Aligned_cols=277 Identities=12% Similarity=0.028 Sum_probs=193.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD-EMT--SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (425)
+.++...|+.++|+.++++++ |.+ ......+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence 445556699999999999998 444 44455558899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
|+..++++...+|..... ..++.++...++..+|+..+++++..+|++..++..+..++...|-...|.+...+ --..
T Consensus 155 Al~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~-~p~~ 232 (822)
T PRK14574 155 VLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE-NPNL 232 (822)
T ss_pred HHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh-Cccc
Confidence 999999999999985554 55666666678887899999999999999999999999999999999999887776 3322
Q ss_pred CcchH--H---------HHHHHh----------hHHHHHHHHHHHHhhcCCchh---hHhhchHHH------------HH
Q psy1863 299 VRNDA--L---------SQLHRE----------MKHEAEKCILTSAKLIAPSIE---DNFSNGYNW------------CV 342 (425)
Q Consensus 299 ~p~~~--~---------~~l~~~----------~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~------------~~ 342 (425)
..... + .+.+.. -.+.|+..++..+...+..+. .+...-.+. ++
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 21111 1 111111 335566777777764443322 111111111 11
Q ss_pred HHhHHhh--chhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC---Cccch---hHHHHHhhhccCcCCCCcHHHH
Q psy1863 343 QSIRNSA--HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNL---SFIYFLVSSEFQYLPTSEVPIY 414 (425)
Q Consensus 343 ~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l---~~~~~l~~~~~~~~~~~ea~~~ 414 (425)
....... ..++..-+....|..|+..++.++|+.+|+.+.+..+. .+..+ .-+++- .+-....++|..+
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA---~ld~e~~~~A~~~ 389 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS---LNESEQLDKAYQF 389 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH---HHhcccHHHHHHH
Confidence 1111111 11222334556899999999999999999998654421 12222 223332 3333467789999
Q ss_pred HHhHhHHhh
Q psy1863 415 LENLLTVLQ 423 (425)
Q Consensus 415 ~~~~l~~~~ 423 (425)
++++.+..|
T Consensus 390 l~~~~~~~p 398 (822)
T PRK14574 390 AVNYSEQTP 398 (822)
T ss_pred HHHHHhcCC
Confidence 999887554
No 61
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=1.7e-14 Score=130.64 Aligned_cols=171 Identities=11% Similarity=0.022 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
..++..+-.++...++.++|+..+.+++.++|.+..+|...+.++..+| ++++++..+.+++..+|.+..+|++.+.++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3444444445666789999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred HHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--h-------
Q psy1863 245 KHLNEY--SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--M------- 311 (425)
Q Consensus 245 ~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--~------- 311 (425)
...|+. ++++.+++++++.+|.+..+|...+.++...|++++|++++.+ +++.+|.+. |...+.+ .
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~-~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQ-LLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCchhHHHHHHHHHHhccccccc
Confidence 999874 7889999999999999999999999999999999999999999 999999988 6666554 1
Q ss_pred ---HHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 312 ---KHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 312 ---~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
.++++.+..+++..+|.+...+...+
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 25678888899999999887776665
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.1e-13 Score=131.61 Aligned_cols=259 Identities=10% Similarity=-0.014 Sum_probs=198.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHh
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-AAFVNLGNCAMAR 213 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 213 (425)
.+..|...+..|+++.|.+.+.++. |.....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 3677999999999999999999887 55666777889999999999999999999999999885 5667779999999
Q ss_pred cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHH
Q psy1863 214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY----QIASLYEITGDVEQASD 289 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~ 289 (425)
|+++.|...++..++..|+++.++..++.++...|++++|.+.+.+..+..+.++.... ....-....+..+++..
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999987654444332 22222234455555666
Q ss_pred HHHHHHHhcCcc----hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863 290 VNENLLLEAVRN----DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE 358 (425)
Q Consensus 290 ~~~~~a~~~~p~----~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (425)
.+.+ +....|. ++ +..++.. ++++|...++++++..|++....+.
T Consensus 247 ~L~~-~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~----------------------- 302 (409)
T TIGR00540 247 GLLN-WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP----------------------- 302 (409)
T ss_pred HHHH-HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-----------------------
Confidence 7777 7777774 44 4445444 9999999999999999987542211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHh--HhHH
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLEN--LLTV 421 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~--~l~~ 421 (425)
.-........++.+++++.+++..+..|.+|+ ...+..+..-.++.....+|.+|+++ .++.
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 11122234457778889999999888887773 23333333334555578899999994 5544
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=9e-15 Score=128.81 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=146.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH---H
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE---A 236 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 236 (425)
+..+..++.+|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 56788999999999999999999999999999999876 57899999999999999999999999999998765 7
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q psy1863 237 LYNLGLAHKHL--------NEYSDSLECFHKLQAIVPSMPEVL-----------------YQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 237 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~ 291 (425)
++.+|.++... |++++|+..|++++..+|++..++ ..+|.++...|++.+|+..+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 89999999986 889999999999999999876442 36788899999999999999
Q ss_pred HHHHHhcCcchH-----HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863 292 ENLLLEAVRNDA-----LSQLHRE-----MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 292 ~~~a~~~~p~~~-----~~~l~~~-----~~~~A~~~~~~a~~~~~ 327 (425)
++ ++...|+++ +..++.+ ++++|..+++......|
T Consensus 190 ~~-al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 190 ET-VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HH-HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99 999988754 6677776 89999998888877665
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.66 E-value=1.1e-14 Score=123.35 Aligned_cols=153 Identities=17% Similarity=0.120 Sum_probs=132.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG 219 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 219 (425)
-+..|+..|+++......+... +.. -+...++.++++..+++++..+|++...|..+|.++...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3567888898887655443332 211 111367889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863 220 KELYVHALDNDATCIEALYNLGLAH-KHLNE--YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296 (425)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~ 296 (425)
+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|.++...|++++|+.+|++ ++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~-aL 171 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK-VL 171 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH-HH
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999 99
Q ss_pred hcCcchH
Q psy1863 297 EAVRNDA 303 (425)
Q Consensus 297 ~~~p~~~ 303 (425)
+..|.+.
T Consensus 172 ~l~~~~~ 178 (198)
T PRK10370 172 DLNSPRV 178 (198)
T ss_pred hhCCCCc
Confidence 9988766
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=5.2e-13 Score=126.43 Aligned_cols=216 Identities=12% Similarity=0.001 Sum_probs=168.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH--------HHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV--------NLG 207 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la 207 (425)
+..+..+...|+++.|...++++. |.++.++..++.+|...|++++|+..+.+..+..+.++.... .+.
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 344888999999999999999988 899999999999999999999999999888887766544322 222
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (425)
.......+-+...++++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.+++
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~a 313 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQL 313 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHH
Confidence 22222333444444455544556778999999999999999999999999999994 4466544444443 44999999
Q ss_pred HHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHH
Q psy1863 288 SDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEIN 360 (425)
Q Consensus 288 ~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (425)
+...++ .++.+|+++ +..+|.+ ++.+|..+|+++++..|+.. .+..
T Consensus 314 l~~~e~-~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~--------------------------~~~~ 366 (398)
T PRK10747 314 EKVLRQ-QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY--------------------------DYAW 366 (398)
T ss_pred HHHHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--------------------------HHHH
Confidence 999999 999999999 6677777 89999999999999988753 2345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863 361 KAVTFLRMNDVSQAVDVLKSCDEM 384 (425)
Q Consensus 361 la~~~~~~g~~~~A~~~~~~~~~~ 384 (425)
++.++.+.|+.++|.++|++...+
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788999999999999999998543
No 66
>KOG0548|consensus
Probab=99.66 E-value=2.2e-14 Score=131.43 Aligned_cols=237 Identities=15% Similarity=0.148 Sum_probs=182.4
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK 92 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 92 (425)
.+.+...+.+...+...+|..|++.+..++.++. ..+..++.+.+|...|.+..--....| ..+.++.
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~---------~it~~~n~aA~~~e~~~~~~c~~~c~~---a~E~gre 289 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELAT---------DITYLNNIAAVYLERGKYAECIELCEK---AVEVGRE 289 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh---------hhHHHHHHHHHHHhccHHHHhhcchHH---HHHHhHH
Confidence 4566777888889999999999999999988772 223345555666555543300000000 0000000
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHH
Q psy1863 93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAAT 170 (425)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 170 (425)
..+. |.. .......+|..+...++++.|+.+|.+++ ...
T Consensus 290 ~rad---------------------~kl-------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----- 330 (539)
T KOG0548|consen 290 LRAD---------------------YKL-------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----- 330 (539)
T ss_pred HHHH---------------------HHH-------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----
Confidence 0000 000 11112336888888999999999999988 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 250 (425)
..+.......++++...+...-.+|.-..--..-|+.++..|+|..|+..|.+++..+|+++..|.|.|.||.++|.+
T Consensus 331 --~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 331 --PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH
Confidence 555566677788888888888888988888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..|+..++++++++|+...+|...|.++..+.+|++|.+.|++ +++.+|++.
T Consensus 409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e-ale~dp~~~ 460 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE-ALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 9999999999999999999999999999999999999999999 999999876
No 67
>KOG4162|consensus
Probab=99.65 E-value=3.1e-13 Score=128.63 Aligned_cols=311 Identities=13% Similarity=0.100 Sum_probs=214.1
Q ss_pred HHHHHhhH-HhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH
Q psy1863 17 GLIDESCI-CARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA 95 (425)
Q Consensus 17 ~l~~~~~~-~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 95 (425)
-++-.+.+ .-.-|..+++++.+.+|+..-. ..++......++-+|++|....+-.| .+..+.. .....
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~---~~~~~l~~~~~l~lGi~y~~~A~~a~-----~~seR~~---~h~ks 463 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLG---GQRSHLKPRGYLFLGIAYGFQARQAN-----LKSERDA---LHKKS 463 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhh---hhhhhhhhhHHHHHHHHHHhHhhcCC-----ChHHHHH---HHHHH
Confidence 34444444 4678999999999999998552 22223334567788899886554331 1111111 11122
Q ss_pred HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHH
Q psy1863 96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATN 171 (425)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 171 (425)
...+..+... .+....+.+.++..|..+++.+.|....++++ ...+.+|..
T Consensus 464 lqale~av~~-------------------------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whL 518 (799)
T KOG4162|consen 464 LQALEEAVQF-------------------------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHL 518 (799)
T ss_pred HHHHHHHHhc-------------------------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 2222222111 11123556888999999999999999999998 678899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------------------
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA-------------------- 231 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------- 231 (425)
++.++...+++.+|+...+.++...|+|.........+-...++.++|+..+...+.+..
T Consensus 519 LALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 519 LALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcc
Confidence 999999999999999999999999988766555555555555666666655555443311
Q ss_pred --------------------------------------------Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 232 --------------------------------------------TC-----IEALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 232 --------------------------------------------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
+. ...|...+..+...++.++|..|+.++-.
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 10 22455667777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-------hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 263 IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-------MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-------~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
+.|..+..|+..|.++...|+..+|.+.|.. ++.++|+++ ...+|.+ ...++......+++++|.+
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~-Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n---- 753 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV-ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN---- 753 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC----
Confidence 7777777777777777777777777777777 777777777 5566655 3333333667777776665
Q ss_pred hhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863 334 FSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA 389 (425)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 389 (425)
.++|+.+|.++...|+.++|.++|..+..+.+..|
T Consensus 754 ---------------------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 754 ---------------------HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred ---------------------HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 45666778999999999999999999988877766
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.5e-12 Score=112.29 Aligned_cols=209 Identities=12% Similarity=0.106 Sum_probs=173.8
Q ss_pred hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc--c-----chHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 117 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--E-----MTSSAATNLSFIYFLQGEVEQAEKMA 189 (425)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~-----~~~~~~~~lg~~~~~~g~~~~A~~~~ 189 (425)
+.+-+.+.++. .+...+..+.+|..+...|..+.||.+-+..+ | ....+...||.-|+..|-++.|...|
T Consensus 54 AvdlF~e~l~~---d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 54 AVDLFLEMLQE---DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred HHHHHHHHHhc---CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444455543 34456777899999999999999999888777 3 34568889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 264 (425)
....+....-..+...|..+|....+|++|+...++..++.+.. +..+..++..+....+.+.|+..+.++++.+
T Consensus 131 ~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 131 NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence 99887777777889999999999999999999999999987765 6678889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863 265 PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPS 329 (425)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~ 329 (425)
|....+-..+|.++...|++++|++.++. +++.+|+.. +..|..+ +.++...++.++.+..+..
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~-v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALER-VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHH-HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999 999998876 3333333 7777777888777776654
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=4.2e-13 Score=125.95 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCHHHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC----TADTYNSAAFVNLGN 208 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~ 208 (425)
+.....|..+...|++++|...+++++ |.+..++.. +..+...|++..+.....+++ ..+|....+...+|.
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 334455666666666666666666666 555555443 444444433333333333332 344555556666666
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP----EVLYQIASLYEITGDV 284 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~ 284 (425)
++..+|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+ ..+..+|.++...|++
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 666666666666666666666666666666666666666666666666666666655322 2344566666666666
Q ss_pred HHHHHHHHHHHHhcCc
Q psy1863 285 EQASDVNENLLLEAVR 300 (425)
Q Consensus 285 ~~A~~~~~~~a~~~~p 300 (425)
++|+..|++ +....|
T Consensus 203 ~~A~~~~~~-~~~~~~ 217 (355)
T cd05804 203 EAALAIYDT-HIAPSA 217 (355)
T ss_pred HHHHHHHHH-Hhcccc
Confidence 666666666 654444
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.9e-13 Score=117.66 Aligned_cols=264 Identities=16% Similarity=0.134 Sum_probs=205.4
Q ss_pred HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863 19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC 98 (425)
Q Consensus 19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~ 98 (425)
...+.-+.-+.+-++|.+.|.+.++.+ |.+...+..+|-.|..-|... +.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--------~~t~e~~ltLGnLfRsRGEvD----------------------RA 88 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQED--------PETFEAHLTLGNLFRSRGEVD----------------------RA 88 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcC--------chhhHHHHHHHHHHHhcchHH----------------------HH
Confidence 334555666788899999998888766 555555555555555545332 11
Q ss_pred HHHhhhhh-hhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHH
Q psy1863 99 ILTSAKLI-APSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSF 174 (425)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~ 174 (425)
|..=..++ +|.+.. ....-....+|.-|+..|-++.|...|.... .....+...|-.
T Consensus 89 IRiHQ~L~~spdlT~-------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~ 149 (389)
T COG2956 89 IRIHQTLLESPDLTF-------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHhcCCCCch-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 11000010 011100 0012234688999999999999999999998 345678899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863 175 IYFLQGEVEQAEKMAEEACTADTYNS-----AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 249 (425)
+|....+|++|++..++..++.|... ..+..++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 99999999999999999999987653 4588899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh-----hHHHHHHHHHHH
Q psy1863 250 YSDSLECFHKLQAIVPSM-PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE-----MKHEAEKCILTS 322 (425)
Q Consensus 250 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~-----~~~~A~~~~~~a 322 (425)
|+.|++.++.+++.+|+. +.+...|..||..+|+.++...++.+ +.+..++.. ...+..+ ..+.|..++.+-
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~-~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR-AMETNTGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHccCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 999999999999999985 56888999999999999999999999 999888766 3333333 777888888888
Q ss_pred HhhcCCchhh
Q psy1863 323 AKLIAPSIED 332 (425)
Q Consensus 323 ~~~~~~~~~~ 332 (425)
++..|+....
T Consensus 309 l~r~Pt~~gf 318 (389)
T COG2956 309 LRRKPTMRGF 318 (389)
T ss_pred HhhCCcHHHH
Confidence 8888876543
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=5.1e-13 Score=134.93 Aligned_cols=279 Identities=10% Similarity=0.066 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
..+..+..+.+..+.|+++.|+..|++++ |.++.+...+..++...|+.++|+.++++++...|........+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34556888999999999999999999999 776544448888999999999999999999944455566666668899
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (425)
...|++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+|+..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985554 5566666667888779999
Q ss_pred HHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHh--hc---------------------hHHH
Q psy1863 291 NENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNF--SN---------------------GYNW 340 (425)
Q Consensus 291 ~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~--~~---------------------~~~~ 340 (425)
+++ +++.+|++. +..+... -...|.+...+ .|+.+.... .+ .+..
T Consensus 192 ~ek-ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 192 SSE-AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE----NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHH-HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh----CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999 999999988 3333222 22233322222 221111000 00 0001
Q ss_pred HHHHhH------H-hhchh----hhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCC
Q psy1863 341 CVQSIR------N-SAHSS----LAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTS 409 (425)
Q Consensus 341 ~~~~~~------~-~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 409 (425)
+...+. . -...| ....+.+..-.++...|++.+++..|+.+.......|....... ....+......
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~--adayl~~~~P~ 344 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA--ASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH--HHHHHhcCCcH
Confidence 111110 0 00111 12334456677888999999999999998654444455433211 13344555677
Q ss_pred cHHHHHHhHhH
Q psy1863 410 EVPIYLENLLT 420 (425)
Q Consensus 410 ea~~~~~~~l~ 420 (425)
+|...+..++.
T Consensus 345 kA~~l~~~~~~ 355 (822)
T PRK14574 345 KAAPILSSLYY 355 (822)
T ss_pred HHHHHHHHHhh
Confidence 77777777654
No 72
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=5e-13 Score=136.25 Aligned_cols=276 Identities=11% Similarity=0.005 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 215 (425)
++..+...|.+.|++++|..+|++..+.+..+|+.+...|...|++++|+..|++..+.. ..+..++..+...+...|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 345667889999999999999999887788899999999999999999999999987654 3366788999999999999
Q ss_pred HHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 216 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
+++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+.++|++.|++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~- 416 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER- 416 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 999999999999875 55678889999999999999999999998753 3667899999999999999999999999
Q ss_pred HHh--cCcchH-HHHHHHh-----hHHHHHHHHHHHHhhc---CCchhhHhhchHHHHHHHhHHhhch-----hh--hcH
Q psy1863 295 LLE--AVRNDA-LSQLHRE-----MKHEAEKCILTSAKLI---APSIEDNFSNGYNWCVQSIRNSAHS-----SL--AQD 356 (425)
Q Consensus 295 a~~--~~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~ 356 (425)
..+ ..|+.. +..+... ..++|..+|+...+.. |+. ..+..+.-.++..+....+.. +. ...
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-MHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-cchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 665 356655 4333332 8899999999887643 322 111111111111111111111 11 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863 357 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT 420 (425)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~ 420 (425)
+|..+...+...|+++.|...+++.....|.... ....+.+........++|.+.++.+.+
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~---~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN---NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc---chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5777888888899999999988888655554333 222333334444567788887776654
No 73
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.58 E-value=1.5e-11 Score=127.83 Aligned_cols=282 Identities=12% Similarity=0.016 Sum_probs=198.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNC 209 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 209 (425)
...+..+...|.+.|++++|..+|+++. ..+..+|..+...|.+.|++++|+..|++..... ..+..+|..+...
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445667778889999999999998887 4467888899999999999999999999887654 2356788889999
Q ss_pred HHHhcCHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Q psy1863 210 AMAREDYVKGKELYVHALDN----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQIASLYEITGDV 284 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 284 (425)
+.+.|++++|...|.++... .|+ ..+|..+...|.+.|++++|.+.|+.+.+.+ +.+..+|..+...|.+.|++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 99999999999999988753 444 6678888888999999999999999988876 45678888999999999999
Q ss_pred HHHHHHHHHHHHhc--CcchH-HHHHHHh-----hHHHHHHHHHHHHhhc-CCchhhHhhchHHHHHHHhHHhhch----
Q psy1863 285 EQASDVNENLLLEA--VRNDA-LSQLHRE-----MKHEAEKCILTSAKLI-APSIEDNFSNGYNWCVQSIRNSAHS---- 351 (425)
Q Consensus 285 ~~A~~~~~~~a~~~--~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 351 (425)
++|...|.+ ..+. .|+.. +..+... +.++|...+.++.+.. +.+...+..+...++..+....+..
T Consensus 631 deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 631 DFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998 6654 56544 4444333 8888999998887754 2222222222222221111111111
Q ss_pred ------hhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863 352 ------SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT 420 (425)
Q Consensus 352 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~ 420 (425)
.-....|..+...|.+.|++++|++.+++.... .-.|+...+...+ ....+....++|..++..+++
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILL-VASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHH
Confidence 112356777888899999999999999887432 2334444443333 333334456666666666654
No 74
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=5.7e-14 Score=112.28 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 187 KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
..+++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++.++|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++..++.+|.++...|++++|+..+++ +++.+|++.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~ 119 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDL-AIEICGENP 119 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhccccc
Confidence 888888888888888888888888888 888888766
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=1.2e-13 Score=117.07 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=114.5
Q ss_pred cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC--HHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA-MARED--YVKGKE 221 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 221 (425)
.++.++++..+++++ |.++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567788899999988 999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
.++++++.+|+++.++.++|.++...|++++|+.+|+++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999986554
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.58 E-value=2e-13 Score=135.32 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (425)
+....++..+.+.. +..+.++.+||.+....|.+++|...++.+++..|++..+..+++.++.+.+++++|+..+++++
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 69 AAALPELLDYVRRY-PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HhhHHHHHHHHHhc-cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 33444444444444 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 228 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..+|+++.+++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++ +++...+-.
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~-a~~~~~~~~ 222 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA-GLDAIGDGA 222 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999 988755433
No 77
>KOG3060|consensus
Probab=99.57 E-value=1.5e-12 Score=108.53 Aligned_cols=173 Identities=16% Similarity=0.056 Sum_probs=134.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
++....+-....+....|+.+-|..++++.....|++..+....|..+...|.+++|+++|+..++-+|++..++...-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 33344455566666777888888888888777778888888888888888888888888888888888888777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--------hH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--------MK 312 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--------~~ 312 (425)
+...+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++ .+-..|.++ ...++.+ +.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE-~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE-LLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 777788888888888888888888888888888888888888888888888 887888887 4455554 77
Q ss_pred HHHHHHHHHHHhhcCCchhhHhhc
Q psy1863 313 HEAEKCILTSAKLIAPSIEDNFSN 336 (425)
Q Consensus 313 ~~A~~~~~~a~~~~~~~~~~~~~~ 336 (425)
.-|.++|.+++++.|.+...++..
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHH
Confidence 788888888888888666655544
No 78
>KOG0495|consensus
Probab=99.57 E-value=9.3e-12 Score=116.56 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
..++++....+.+...+++.|..+|.++. .....+|+.-+.....+|+.++|+.+++++++..|.....|..+|.++.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE 696 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH
Confidence 67888888888899999999999999998 7778999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
++++.+.|...|...++..|+.+..|..++.+-.+.|+.-.|...++++.-.+|.+...|.....+-.+.|+.+.|....
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcchH--HHHHHHh-hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhch---------hhhcHHHH
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE-MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHS---------SLAQDLEI 359 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 359 (425)
.+ |++-.|++. |..-..+ ....-..-...+++....+.......+-.+..+.....+.. +...++|.
T Consensus 777 ak-ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 777 AK-ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HH-HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 99 999999877 3333222 11111222333333344444333333322222222222222 22345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 360 NKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
..=..+...|.-++-.+.++++....|
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 555667778888888888888854443
No 79
>KOG0550|consensus
Probab=99.56 E-value=1.2e-13 Score=122.54 Aligned_cols=249 Identities=13% Similarity=0.108 Sum_probs=203.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
....|..+++..+|..|+..|..++ |+++..|.+.+.+++..|+|++|....++.++++|.........+.++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 4567889999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH------------hc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 215 DYVKGKELYVHAL------------DN------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 215 ~~~~A~~~~~~al------------~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
+..+|...++..- .+ .|....+...-+.|+...|++++|...--..+++++.+..+++..|.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 9888886665321 01 13345566778899999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCcchH-----HHHHHHh--------------hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 277 LYEITGDVEQASDVNENLLLEAVRNDA-----LSQLHRE--------------MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~-----~~~l~~~--------------~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
++...++.+.|+..|++ ++.++|++. ....-.+ ++..|.++|..++.++|++......+-
T Consensus 212 ~~yy~~~~~ka~~hf~q-al~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQ-ALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred ccccccchHHHHHHHhh-hhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 99999999999999999 999999887 1111111 889999999999999999887655442
Q ss_pred HHHHHH---------HhH----HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863 338 YNWCVQ---------SIR----NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 338 ~~~~~~---------~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 387 (425)
+..+.- ++. ...+++.....++..|.|+...++|++|++.|+++.+....
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 222211 111 12333334566778999999999999999999999765544
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=9.5e-13 Score=110.83 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
...+..+...|+-+.+..+..++. +.....+..+|...+..|++..|+..++++....|+++.+|..+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 667778888888888887777755 67777777788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+++|...|.+++++.|..+.+..|+|..+.-.|+++.|..++..+....+.+..+..+++.+....|+++.|...-.+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999988999999999999999999999999888888888888888999998899998888776655
No 81
>KOG3060|consensus
Probab=99.55 E-value=7.2e-12 Score=104.60 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
..++-....+.+..|+.+-|..++++.. |....+...-|..+...|.+++|+++|+..++-+|.+..++-..-.+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 3344466778889999999999999877 8999999999999999999999999999999999999999998888899
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG---DVEQAS 288 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~ 288 (425)
.+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-|+++.+-+.|.++..+..+|.+++.+| ++.-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876 567899
Q ss_pred HHHHHHHHhcCcchH
Q psy1863 289 DVNENLLLEAVRNDA 303 (425)
Q Consensus 289 ~~~~~~a~~~~p~~~ 303 (425)
.+|.+ +++++|.+.
T Consensus 212 kyy~~-alkl~~~~~ 225 (289)
T KOG3060|consen 212 KYYER-ALKLNPKNL 225 (289)
T ss_pred HHHHH-HHHhChHhH
Confidence 99999 999999666
No 82
>KOG0553|consensus
Probab=99.53 E-value=2.1e-13 Score=116.83 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
+-+-.-|.-.+..++|.+|+..|.+||.++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 44556778888888999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863 247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (425)
+|++++|++.|+++|.++|++...+.+|..+-..++...
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988888888877776666555
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.53 E-value=2.4e-11 Score=114.01 Aligned_cols=283 Identities=12% Similarity=0.042 Sum_probs=189.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
+..+|..+...|+.+.+...+.++. ..........|.++...|++++|...++++++.+|++..++.. +..+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence 4677888888888888877777766 2345567778888999999999999999999999998877665 55555
Q ss_pred HhcCHHHHHHHHHHHH----hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863 212 AREDYVKGKELYVHAL----DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (425)
..|++..+.....+++ ..+|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 5554444444444433 456777778888899999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcC--CchhhHhhc---hH------------H
Q psy1863 288 SDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIA--PSIEDNFSN---GY------------N 339 (425)
Q Consensus 288 ~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~--~~~~~~~~~---~~------------~ 339 (425)
+.++++ ++...|.++ +..++.+ ++++|...+++++...| ......... .+ .
T Consensus 168 ~~~l~~-~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 168 IAFMES-WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHh-hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 999999 888876433 3345555 88999999998876555 222111010 00 1
Q ss_pred H--HHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC---Cc---cchhHHHHHhhhccCcCCCCcH
Q psy1863 340 W--CVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS---AA---TNLSFIYFLVSSEFQYLPTSEV 411 (425)
Q Consensus 340 ~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~---~~l~~~~~l~~~~~~~~~~~ea 411 (425)
| +....................+.++...|+.++|...++........ .. ..+...-..--..+......+|
T Consensus 247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 1 11110000001122233457888888899999898888887653322 21 1122111111223334467777
Q ss_pred HHHHHhHhHHh
Q psy1863 412 PIYLENLLTVL 422 (425)
Q Consensus 412 ~~~~~~~l~~~ 422 (425)
...+..++...
T Consensus 327 ~~~L~~al~~a 337 (355)
T cd05804 327 LELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 84
>KOG4162|consensus
Probab=99.52 E-value=1.9e-12 Score=123.36 Aligned_cols=265 Identities=17% Similarity=0.171 Sum_probs=186.5
Q ss_pred HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH--
Q psy1863 18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA-- 95 (425)
Q Consensus 18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~-- 95 (425)
+..-|..+..+++.+.|++.+++++.+.+ -.....++-+.+.+.-.++++....+.+.++.....+-.-..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 34446677789999999999999998742 234567788888888888877555555555555544211100
Q ss_pred ----------HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---
Q psy1863 96 ----------EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--- 162 (425)
Q Consensus 96 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--- 162 (425)
+..+.+....+ .-|..-|. +...+.. ....-..+......++..+|++.++++.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L-----~~we~~~~-~q~~~~~-------g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKL-----ALWEAEYG-VQQTLDE-------GKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHH-----HHHHhhhh-Hhhhhhh-------hhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 01111111000 00111000 0000000 0000011111112222222332222221
Q ss_pred -------------------c--c-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863 163 -------------------E--M-----TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY 216 (425)
Q Consensus 163 -------------------~--~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 216 (425)
| . ....|...+..+...+..++|..++.++-.++|..+..|+..|.++...|.+
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh
Confidence 1 1 1346778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE--CFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
.+|...|..++.++|+++.+...+|.++...|+..-|.. .+..+++++|.++.+|+.+|.++...|+.++|.++|.-
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a- 779 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA- 779 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH-
Confidence 999999999999999999999999999999999888888 99999999999999999999999999999999999999
Q ss_pred HHhcCcchH
Q psy1863 295 LLEAVRNDA 303 (425)
Q Consensus 295 a~~~~p~~~ 303 (425)
++++.+++|
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 999998887
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.52 E-value=2.6e-12 Score=108.20 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=149.6
Q ss_pred HHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863 153 QAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230 (425)
Q Consensus 153 ~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (425)
.+..++.... |.+..+ .+++..+...|+-+.+..+..++...+|.+......+|...+..|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 4444555555 888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH 308 (425)
Q Consensus 231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~ 308 (425)
|+++.+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..|+|..+...|+++.|..++.. +....+.++ ..+++
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~-a~l~~~ad~~v~~NLA 209 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP-AYLSPAADSRVRQNLA 209 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH-HHhCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 888777666 66666
Q ss_pred Hh-----hHHHHHHHHH
Q psy1863 309 RE-----MKHEAEKCIL 320 (425)
Q Consensus 309 ~~-----~~~~A~~~~~ 320 (425)
.+ ++..|.....
T Consensus 210 l~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 210 LVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHhhcCChHHHHhhcc
Confidence 66 7777765543
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=6.3e-13 Score=106.20 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=107.7
Q ss_pred HHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863 157 VLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233 (425)
Q Consensus 157 ~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (425)
.|++++ |.+..+...+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455555 77888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
+..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999876643
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=6e-13 Score=104.80 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
++.-+..+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|+|.+|+..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44445555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~ 264 (425)
|++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666555544
No 88
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=9.3e-13 Score=103.73 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=96.1
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 192 ACTAD-TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 192 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
...+. ++..+..+.+|..+...|++++|.+.|+-+...+|.++..|++||.++..+|++++|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 66777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++++|.|+...|+.+.|...|+. ++....+.+
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~-Ai~~~~~~~ 137 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKA-VVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HHHHhccCh
Confidence 99999999999999999999998 888764444
No 89
>KOG1156|consensus
Probab=99.51 E-value=5.7e-12 Score=117.99 Aligned_cols=239 Identities=15% Similarity=0.185 Sum_probs=183.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
++..+.-.+..++|...++..+.++ |.+++.+...|..+...|+-++|..+...++..++.+...|..+|.++...+
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3566777788899999999998888 9999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
+|++|+++|+.|+.+.|++..+|.-++.+..++++++.....-.+.++..|.....|...+..+...|++..|....+.
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e- 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE- 168 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHhcC---cchH-HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh-hcHHHHHHHHH
Q psy1863 295 LLEAV---RNDA-LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL-AQDLEINKAVT 364 (425)
Q Consensus 295 a~~~~---p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~ 364 (425)
..+.. |+.. +...-.+ -..++- .++++++. +........ ........|.+
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-~~q~ale~-------------------L~~~e~~i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAG-SLQKALEH-------------------LLDNEKQIVDKLAFEETKADL 228 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-cHHHHHHH-------------------HHhhhhHHHHHHHHhhhHHHH
Confidence 55543 3222 2111111 000000 01111111 000000001 11233457889
Q ss_pred HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhh
Q psy1863 365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVS 400 (425)
Q Consensus 365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~ 400 (425)
+.+.|++++|+..|..+. ..+|+++.....+..
T Consensus 229 ~~kl~~lEeA~~~y~~Ll---~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLL---ERNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHhhHHhHHHHHHHHH---hhCchhHHHHHHHHH
Confidence 999999999999999984 445666665555433
No 90
>KOG0553|consensus
Probab=99.50 E-value=2.9e-13 Score=116.02 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
..+-.-|+-+++.++|.+|+..|.+||.++|+++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 281 TGDVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 281 ~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
+|++++|++.|++ +++++|++. +.+|...
T Consensus 162 ~gk~~~A~~aykK-aLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 162 LGKYEEAIEAYKK-ALELDPDNESYKSNLKIA 192 (304)
T ss_pred cCcHHHHHHHHHh-hhccCCCcHHHHHHHHHH
Confidence 9999999999999 999999999 5555544
No 91
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.50 E-value=5.9e-11 Score=121.12 Aligned_cols=278 Identities=10% Similarity=-0.010 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-YNSAAFVNLGNCAMARE 214 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 214 (425)
..+..+...|.+.|+++.|.++|++....+..+|+.+...|...|++++|+..|++..+..+ .+..++..+...+...|
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 34456677888899999999999888744667888888999999999999999998876542 23344444445555555
Q ss_pred CHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
....+...+..+++.. ..+..++..+...|.+.|++++|...|++. .+.+..+|..+...|.+.|++++|...|++
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555555554432 123445555555555556666555555543 223445555555555555666666555555
Q ss_pred HHHh--cCcchH-HHHHHH----h-hHHHHHHHHHHHHhhc-CCchhhHhhchHHHHHHHhHHhhchh------hhcHHH
Q psy1863 294 LLLE--AVRNDA-LSQLHR----E-MKHEAEKCILTSAKLI-APSIEDNFSNGYNWCVQSIRNSAHSS------LAQDLE 358 (425)
Q Consensus 294 ~a~~--~~p~~~-~~~l~~----~-~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 358 (425)
... ..|+.. +..+.. . ..++|.+.+..+.+.. +.+......+.-.++..+....+... -....|
T Consensus 316 -M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~ 394 (697)
T PLN03081 316 -MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394 (697)
T ss_pred -HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH
Confidence 332 223333 222221 1 5555555555555443 11211111111111111111111111 122345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHh
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLL 419 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l 419 (425)
..+...|.+.|+.++|++.|++..+. ...|+...+...+ .........+++..+++.+.
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll-~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVL-SACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH-HHHhcCCcHHHHHHHHHHHH
Confidence 55666666666666666666665321 2233333333333 22333334455555555544
No 92
>PLN03077 Protein ECB2; Provisional
Probab=99.49 E-value=2.9e-11 Score=126.31 Aligned_cols=279 Identities=11% Similarity=-0.027 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNSAAFVNLGNCAMA 212 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 212 (425)
..++..+...|.+.|++++|..+|++....+..+|..+...|.+.|++++|+..|++..... |+. .++..+-..+..
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~ 401 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACAC 401 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhc
Confidence 45567788899999999999999999875567789999999999999999999999886654 544 455566668889
Q ss_pred hcCHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 213 REDYVKGKELYVHALDNDA-TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
.|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|+.++|+..|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999988743 4577888999999999999999999987543 45678999999999999999999999
Q ss_pred HHHHHh-cCcchH-HH----HHHHh-hHHHHHHHHHHHHhhcCCchhh-HhhchHHHHHHHhHHhhch-----hhhcHHH
Q psy1863 292 ENLLLE-AVRNDA-LS----QLHRE-MKHEAEKCILTSAKLIAPSIED-NFSNGYNWCVQSIRNSAHS-----SLAQDLE 358 (425)
Q Consensus 292 ~~~a~~-~~p~~~-~~----~l~~~-~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 358 (425)
++ ... ..|+.. +. ..+.. ..+.+.+.+..+++..-..... ...+...++..+....+.. ......|
T Consensus 479 ~~-m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 479 RQ-MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HH-HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 99 554 345544 22 22222 6677777777666543211110 0011001111111111110 2234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT 420 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~ 420 (425)
..+...|.+.|+.++|++.|++..+ ....|+...+...+ ....+....+++..+++.+.+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll-~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHH-HHHhhcChHHHHHHHHHHHHH
Confidence 7788888888888888888887653 23345555544444 223333456677777777653
No 93
>PLN03077 Protein ECB2; Provisional
Probab=99.49 E-value=6.2e-11 Score=123.89 Aligned_cols=241 Identities=10% Similarity=-0.063 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL-------- 206 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 206 (425)
..++..+...|.+.|++++|.++|++....+..+|..+...|...|++++|+..|++.....+.+..++..+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG 503 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc
Confidence 344566778899999999999999998755667899999999999999999999999886543344333333
Q ss_pred ---------------------------HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 207 ---------------------------GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259 (425)
Q Consensus 207 ---------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 259 (425)
...|.+.|+.++|...|+.. +.+..+|..+...|.+.|+.++|+..|++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35556666666666666654 34566677777777777777777777777
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CcchH-HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863 260 LQAIVP-SMPEVLYQIASLYEITGDVEQASDVNENLLLEA---VRNDA-LSQLHRE-----MKHEAEKCILTSAKLIAPS 329 (425)
Q Consensus 260 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~---~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~~~~ 329 (425)
..+... .+..++..+-..+...|++++|..+|+. ..+. .|+.. +..+..+ +.++|.+.+++. ...|+
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~-M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd- 656 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS-MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD- 656 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-
Confidence 665321 1344555555666677777777777777 5422 34332 3333222 667777766654 22232
Q ss_pred hhhHhhchHHHHHH---------HhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 330 IEDNFSNGYNWCVQ---------SIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 330 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
...|..+....... ...-....+.....+..++.+|...|++++|.+..+...
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 22222111100000 000122333345566667777777777777777776664
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=2.1e-11 Score=122.13 Aligned_cols=229 Identities=13% Similarity=0.030 Sum_probs=157.9
Q ss_pred CcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1863 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL 206 (425)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 206 (425)
+++...+.+..+...+...+++++|+..++..+ |....+++.+|.+++..+++.++... .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 344445555556666666666666666666555 55666666666666666654444333 2222
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
......++ .+++++...+...+++..+++.+|.||-++|+.++|...|+++++.+|+++.+..++|..|... +.++
T Consensus 92 --~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 --SFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --hcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22223333 4455555555556666789999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHH
Q psy1863 287 ASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFL 366 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 366 (425)
|..++.+ |+... +..-++..+..++.+.+..+|.+.+..... .+.+..+-.......++.-+-.+|.
T Consensus 168 A~~m~~K-AV~~~-------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i-----~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 168 AITYLKK-AIYRF-------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRI-----ERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHHH-HHHHH-------HhhhcchHHHHHHHHHHhcCcccchHHHHH-----HHHHHhhhccchhHHHHHHHHHHHh
Confidence 9999999 87652 111167778888899998888877653322 1122221112223456667888999
Q ss_pred hcCCHHHHHHHHHHHHhhccCCc
Q psy1863 367 RMNDVSQAVDVLKSCDEMTSSAA 389 (425)
Q Consensus 367 ~~g~~~~A~~~~~~~~~~~~~~~ 389 (425)
.+++|++++.+++.+....+.+.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcch
Confidence 99999999999999977666543
No 95
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.46 E-value=4.9e-10 Score=116.65 Aligned_cols=279 Identities=11% Similarity=-0.036 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-YNSAAFVNLGNCA 210 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 210 (425)
..+..+-..+...|+++.|..++..+. ..+..++..+...|.+.|++++|...|++..+... .+..+|..+...|
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344556667888999999999999887 45678889999999999999999999999987653 3788899999999
Q ss_pred HHhcCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCH
Q psy1863 211 MAREDYVKGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI----VPSMPEVLYQIASLYEITGDV 284 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~ 284 (425)
.+.|++++|+..|+..... .| +..+|..+...|.+.|++++|.+.|.++... .| +..++..+..+|.+.|++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQV 595 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH
Confidence 9999999999999998765 34 4778999999999999999999999998763 33 567888899999999999
Q ss_pred HHHHHHHHHHHHhcC--cchH-HHHHHHh-----hHHHHHHHHHHHHhhc--CCchhhHhhchHHHHHHHhHHhhc----
Q psy1863 285 EQASDVNENLLLEAV--RNDA-LSQLHRE-----MKHEAEKCILTSAKLI--APSIEDNFSNGYNWCVQSIRNSAH---- 350 (425)
Q Consensus 285 ~~A~~~~~~~a~~~~--p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---- 350 (425)
++|.+.|+. ..+.+ |+.. |..+... +.++|...|.+..+.. |+. ..+..+...++..+....+.
T Consensus 596 deA~elf~~-M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 596 DRAKEVYQM-IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHH-HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999 77764 2322 4444333 8999999999988763 432 22222111111111111111
Q ss_pred ------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhH
Q psy1863 351 ------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT 420 (425)
Q Consensus 351 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~ 420 (425)
.......+..+...|.+.|++++|+++|++..+. ...|+...+... .....+....++|.++++.+..
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~L-I~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNAL-ITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHH
Confidence 1123456778999999999999999999988543 234444443333 3445555678899999988764
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=1.3e-10 Score=111.52 Aligned_cols=232 Identities=19% Similarity=0.176 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
+++.+-.+.++...|++++|++.+.+.. .+...+.-..|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 3444556677777777777777776655 6666777777777777788788877777777777777777666666652
Q ss_pred Hhc-----CHHHHHHHHHHHHhcCcC------------------------------------------------------
Q psy1863 212 ARE-----DYVKGKELYVHALDNDAT------------------------------------------------------ 232 (425)
Q Consensus 212 ~~g-----~~~~A~~~~~~al~~~~~------------------------------------------------------ 232 (425)
... +.+.-..+|++.....|.
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 221 223333333333222110
Q ss_pred ---------------------------c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863 233 ---------------------------C--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283 (425)
Q Consensus 233 ---------------------------~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (425)
. ..+++.+|..|-..|++++|+++.++++...|..++.+...|.++-..|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 1 23456777777778888888888888888888878888888888888888
Q ss_pred HHHHHHHHHHHHHhcCcchH-HHHH-HHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcH
Q psy1863 284 VEQASDVNENLLLEAVRNDA-LSQL-HRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD 356 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~~~-~~~l-~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (425)
+.+|...++. +..+++.|- +..- +.. +.++|...+..-.+...+....... ..-
T Consensus 244 ~~~Aa~~~~~-Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~------------------mQc 304 (517)
T PF12569_consen 244 LKEAAEAMDE-ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND------------------MQC 304 (517)
T ss_pred HHHHHHHHHH-HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH------------------HHH
Confidence 8888888888 877777776 2211 111 6666666554443322211111110 012
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863 357 LE--INKAVTFLRMNDVSQAVDVLKSCDEMT 385 (425)
Q Consensus 357 ~~--~~la~~~~~~g~~~~A~~~~~~~~~~~ 385 (425)
+| ...|.+|.+.|++..|+..|..+.+..
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33 347999999999999999988886533
No 97
>KOG1127|consensus
Probab=99.46 E-value=7.7e-11 Score=115.30 Aligned_cols=246 Identities=12% Similarity=0.058 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
+..-+..+|..|...+++..|+..|+.++ |.+..+|..+|.+|...|.+..|++.|.++..++|.+....+..+...
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 34445568888899999999999999988 888899999999999999999999999999999998877777777777
Q ss_pred HHhcCHHHHHHHHHHHHhcC------------------------------------------------------------
Q psy1863 211 MAREDYVKGKELYVHALDND------------------------------------------------------------ 230 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~------------------------------------------------------------ 230 (425)
...|+|.+|+..+...+...
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 77777777766665554321
Q ss_pred --------------------------------cC-------------------cHHHHHHHHHHHHH--------cCCHH
Q psy1863 231 --------------------------------AT-------------------CIEALYNLGLAHKH--------LNEYS 251 (425)
Q Consensus 231 --------------------------------~~-------------------~~~~~~~la~~~~~--------~g~~~ 251 (425)
|+ ++..|+++|.-|.+ +.+..
T Consensus 721 dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 721 DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 00 12346667766655 22334
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHh
Q psy1863 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAK 324 (425)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~ 324 (425)
.|+.++.+++++..++...|..||.+ ...|++.-|..+|-+ .....|... |.++|.+ +.+.|...+.++..
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIk-s~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIK-SRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhh-hhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 67888888888887788888888877 555788888888888 877788777 8888777 88888888888888
Q ss_pred hcCCchhhHhhchHHHHHHH-----hHHhhch---------hhhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 325 LIAPSIEDNFSNGYNWCVQS-----IRNSAHS---------SLAQDLEINKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
++|.+...|....+..-..+ ..-.++. ......|.+-......+|++++-+..-+++
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 88888877766543221111 1111110 112244566667777888888877766665
No 98
>KOG1156|consensus
Probab=99.44 E-value=1.4e-11 Score=115.53 Aligned_cols=235 Identities=13% Similarity=0.094 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
..+++..+.-.+..++|...++..+..++..|.+++++...|..+..+|+-++|..+.+.++..++.+...|.-+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34556666666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHH
Q psy1863 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKC 318 (425)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~ 318 (425)
...+|++|+.+|..|+.+.|++..++..++.+..++++++.....-.+ .++..|+.. |..++.. ++..|...
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~-LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ-LLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999888 6666655 77777776
Q ss_pred HHHHHhhcC---CchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHH
Q psy1863 319 ILTSAKLIA---PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFI 395 (425)
Q Consensus 319 ~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 395 (425)
.+...+... +.....+ ..+.+....+..+.|.+++|++.+...++ ...+++.+.
T Consensus 166 l~ef~~t~~~~~s~~~~e~--------------------se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~ 222 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEH--------------------SELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFE 222 (700)
T ss_pred HHHHHHhhccCCCHHHHHH--------------------HHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHh
Confidence 666655442 2111111 23334456677888999999998887742 223333322
Q ss_pred HHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863 396 YFLVSSEFQYLPTSEVPIYLENLLTVLQY 424 (425)
Q Consensus 396 ~~l~~~~~~~~~~~ea~~~~~~~l~~~~~ 424 (425)
.--..-.+...+..+|...+..++..+|.
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 22211222233667888888888777665
No 99
>KOG1130|consensus
Probab=99.42 E-value=3.4e-12 Score=113.37 Aligned_cols=268 Identities=19% Similarity=0.180 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHH
Q psy1863 12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREM 91 (425)
Q Consensus 12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 91 (425)
+..+-+|...+-.+...|++...+..|+.|+. .+..+...+...|.++|.-+ --|..|.
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~q-----------vGTeDl~tLSAIYsQLGNAy-------fyL~DY~--- 72 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQ-----------VGTEDLSTLSAIYSQLGNAY-------FYLKDYE--- 72 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHH-----------hcchHHHHHHHHHHHhcchh-------hhHhhHH---
Confidence 34567788899999999999999999999874 45667777788888888643 0111121
Q ss_pred HHHHHHH---HHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------
Q psy1863 92 KHEAEKC---ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------ 162 (425)
Q Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------ 162 (425)
.+.++ -++.++++...+. .+...-++|+.+-..|.|++|+.+..+-+
T Consensus 73 --kAl~yH~hDltlar~lgdklG----------------------EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL 128 (639)
T KOG1130|consen 73 --KALKYHTHDLTLARLLGDKLG----------------------EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL 128 (639)
T ss_pred --HHHhhhhhhHHHHHHhcchhc----------------------cccccccccchhhhhcccchHHHHHHHHhHHHHHH
Confidence 22211 1122233211110 11122477889999999999998877766
Q ss_pred ---cchHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHh
Q psy1863 163 ---EMTSSAATNLSFIYFLQGE--------------------VEQAEKMAEEACTADTY------NSAAFVNLGNCAMAR 213 (425)
Q Consensus 163 ---~~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~ 213 (425)
.....+++++|.+|...|+ ++.|.++|..-+++... ...++-+||+.|+-+
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee
Confidence 3456889999999988764 34555666655554322 234578899999999
Q ss_pred cCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C--CHHHHHHHHHHHHHc
Q psy1863 214 EDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVP----S--MPEVLYQIASLYEIT 281 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~~la~~~~~~ 281 (425)
|+|+.|+...+.-+.+.... -.++.++|.++.-+|+++.|+++|+..+.+.. . .....+.||..|...
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 99999999988887764322 45788999999999999999999998775532 2 345678899999999
Q ss_pred CCHHHHHHHHHHHHHhcCcc--hH------HHHHHHh-----hHHHHHHHHHHHHhh
Q psy1863 282 GDVEQASDVNENLLLEAVRN--DA------LSQLHRE-----MKHEAEKCILTSAKL 325 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~--~~------~~~l~~~-----~~~~A~~~~~~a~~~ 325 (425)
.++++|+.++.+ -+.+..+ +. ...||.. ..++|+.+.+..++.
T Consensus 289 ~e~~kAI~Yh~r-HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 289 KEVQKAITYHQR-HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999888 6655322 11 3444444 677777777766655
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.42 E-value=4.9e-11 Score=119.48 Aligned_cols=234 Identities=8% Similarity=-0.042 Sum_probs=131.4
Q ss_pred hhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 112 DNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEE 191 (425)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 191 (425)
+++..+...|.+.+.. .+-....++.+|.++++.+++..+... .++.......++ .+++++-.
T Consensus 45 ~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~-~~ve~~~~ 107 (906)
T PRK14720 45 NLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW-AIVEHICD 107 (906)
T ss_pred CCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch-hHHHHHHH
Confidence 3445555555544443 333556778889999999997776644 333333333444 44444444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 192 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
.+-..+.+..+++.+|.||-++|++++|...|+++++.+|+++.+++++|..|... ++++|+.++.+++..
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 44455556666666666666666666666666666666666666666666666666 666666666666554
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--H--------HHHH----------------Hh-hHHHHHHHHHHHHh
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA--L--------SQLH----------------RE-MKHEAEKCILTSAK 324 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~--------~~l~----------------~~-~~~~A~~~~~~a~~ 324 (425)
+...+++.++.+++.+ .+..+|++. + ..++ .. ++++++.+++.+++
T Consensus 179 ------~i~~kq~~~~~e~W~k-~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 179 ------FIKKKQYVGIEEIWSK-LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred ------HHhhhcchHHHHHHHH-HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 3444455555555555 555555533 0 0001 01 66678888888888
Q ss_pred hcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863 325 LIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE 383 (425)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 383 (425)
.+|.+......+. .|..+.+. .... .+-.+.++.+--.-.++..++..|++...
T Consensus 252 ~~~~n~~a~~~l~--~~y~~kY~-~~~~--~ee~l~~s~l~~~~~~~~~~i~~fek~i~ 305 (906)
T PRK14720 252 HDNKNNKAREELI--RFYKEKYK-DHSL--LEDYLKMSDIGNNRKPVKDCIADFEKNIV 305 (906)
T ss_pred cCCcchhhHHHHH--HHHHHHcc-Ccch--HHHHHHHhccccCCccHHHHHHHHHHHee
Confidence 8887766544442 22221111 0111 11222333333333567888888877753
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.42 E-value=1e-11 Score=123.35 Aligned_cols=138 Identities=6% Similarity=-0.064 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
.+.++.+|.+....|.+++|...++.++ |++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 6778999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
..|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|++++.....-...+.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999998765555443
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=8.7e-12 Score=115.74 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 248 (425)
+...|...+..|++++|+.+|.+++..+|+++.+++++|.++...|++++|+..+++++.++|+++.+++++|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45668888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (425)
++++|+..|++++.++|+++.+...++.|...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999888888886655
No 103
>KOG1128|consensus
Probab=99.36 E-value=1.4e-10 Score=110.26 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
.+...+|..++..|-...|+.+|++. ..|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-
T Consensus 399 q~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 34567899999999999999999886 7888899999999999999999999888 77788888888887776666
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a 295 (425)
|++|.++.+.. +..+...+|......++|+++..+++..++++|-....|+.+|.+..+.++++.|..+|.. +
T Consensus 473 yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r-c 545 (777)
T KOG1128|consen 473 YEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR-C 545 (777)
T ss_pred HHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH-H
Confidence 66666555443 3457777888888899999999999999999999999999999999999999999999999 9
Q ss_pred HhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhc
Q psy1863 296 LEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRM 368 (425)
Q Consensus 296 ~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 368 (425)
+.++|++. |.+++.. +..+|...+.++++-+-.+.. +|.|--.+-...
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-------------------------iWENymlvsvdv 600 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-------------------------IWENYMLVSVDV 600 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-------------------------eeechhhhhhhc
Confidence 99999998 8888877 777888888888887644433 333444566788
Q ss_pred CCHHHHHHHHHHHHhhc
Q psy1863 369 NDVSQAVDVLKSCDEMT 385 (425)
Q Consensus 369 g~~~~A~~~~~~~~~~~ 385 (425)
|.+++|++.+.+...+.
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 99999999999986433
No 104
>KOG3785|consensus
Probab=99.36 E-value=8e-11 Score=102.91 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=134.3
Q ss_pred HcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863 147 RMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL 222 (425)
Q Consensus 147 ~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 222 (425)
...+|..|+.+++-.. ......-..+|.|++..|+|++|...|.-+...+..+...+.+++.|++-+|.|.+|...
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 112233344455555555555555555554444444444455555555555555555444
Q ss_pred HHHHHhc--------------C------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 223 YVHALDN--------------D------------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 223 ~~~al~~--------------~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
..++-+. + .+..+-...++.+++..-.|++|++.|.+.+.-+|+....-..++.
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHH
Confidence 3332111 0 0112334556777777778999999999999999988888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHH------
Q psy1863 277 LYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQ------ 343 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~------ 343 (425)
||.++.-++-+.+.+.- .+...|+++ -.+|-.+ +-..|..-.+...+-..... ..+-..|..
T Consensus 194 CyyKlDYydvsqevl~v-YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~----~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKV-YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY----PFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHhcchhhhHHHHHHH-HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc----hhHHHHHHcCeEEEe
Confidence 99999999999988888 888899988 3333332 22333333333332222111 111011100
Q ss_pred ----HhHH-hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863 344 ----SIRN-SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 344 ----~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 390 (425)
++.- -..-...+++.++++..|+++|+.++|+...+.+ .|..|.
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~ 317 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPY 317 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChH
Confidence 0000 0111124678889999999999999999999988 555453
No 105
>KOG1130|consensus
Probab=99.36 E-value=5.5e-12 Score=112.08 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=176.3
Q ss_pred hhhhhhHHHHHHHHHhc-CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCC
Q psy1863 112 DNFSNGYNWCVQSIRNS-AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGE 181 (425)
Q Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~ 181 (425)
++...|..++...+..- ..-..-+.+|-.+|+.|+..++|++|+++-.--+ ...+.+.-+||..+-..|.
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~ 110 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA 110 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc
Confidence 34555666565555431 1222346678899999999999999998744332 3445667799999999999
Q ss_pred HHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHhcCcC---
Q psy1863 182 VEQAEKMAEEACTADT------YNSAAFVNLGNCAMARED--------------------YVKGKELYVHALDNDAT--- 232 (425)
Q Consensus 182 ~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~--- 232 (425)
|++|+.+..+-+.+.. ....+++++|++|...|+ ++.|.++|..-+++...
T Consensus 111 fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD 190 (639)
T KOG1130|consen 111 FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD 190 (639)
T ss_pred cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999888776642 235689999999998764 34455555555544221
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C
Q psy1863 233 ---CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEVLYQIASLYEITGDVEQASDVNENLLLEA----V 299 (425)
Q Consensus 233 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~----~ 299 (425)
...++-+||..|+-+|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+++.|+++|+. .+.+ .
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~-tl~LAielg 269 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL-TLNLAIELG 269 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH-HHHHHHHhc
Confidence 24577899999999999999999988777765432 35889999999999999999999998 6544 2
Q ss_pred cchH----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCC
Q psy1863 300 RNDA----LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMND 370 (425)
Q Consensus 300 p~~~----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 370 (425)
.... -+.||.. ++++|+.++.+-+.+....-+ ... .......+|..|...|.
T Consensus 270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D-riG------------------e~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED-RIG------------------ELRACWSLGNAFNALGE 330 (639)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh------------------hHHHHHHHHHHHHhhhh
Confidence 2211 3444544 788888888877665322111 000 12456678899999999
Q ss_pred HHHHHHHHHHHH
Q psy1863 371 VSQAVDVLKSCD 382 (425)
Q Consensus 371 ~~~A~~~~~~~~ 382 (425)
.++|+...+...
T Consensus 331 h~kAl~fae~hl 342 (639)
T KOG1130|consen 331 HRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999998877764
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=1.6e-10 Score=105.47 Aligned_cols=156 Identities=14% Similarity=0.083 Sum_probs=141.1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
+....+++..+..++..|++++|...+...+...|+|+..+...+.+++..++..+|.+.+++++.++|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTS 322 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a 322 (425)
++.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+ ...... ++++|+..+..+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-~~~~~G----------~~~~A~~~l~~A 451 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE-GYALAG----------RLEQAIIFLMRA 451 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH-HHHhCC----------CHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888877 443322 677777777777
Q ss_pred HhhcCCc
Q psy1863 323 AKLIAPS 329 (425)
Q Consensus 323 ~~~~~~~ 329 (425)
.+....+
T Consensus 452 ~~~~~~~ 458 (484)
T COG4783 452 SQQVKLG 458 (484)
T ss_pred HHhccCC
Confidence 7766433
No 107
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.35 E-value=2.2e-10 Score=97.85 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFV 204 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 204 (425)
..+..+..|..++..|++.+|+..|++++ +..+.+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 34556888999999999999999999998 56678999999999999999999999999999998875 5788
Q ss_pred HHHHHHHHhc-----------CHHHHHHHHHHHHhcCcCcHH-----------------HHHHHHHHHHHcCCHHHHHHH
Q psy1863 205 NLGNCAMARE-----------DYVKGKELYVHALDNDATCIE-----------------ALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 205 ~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~ 256 (425)
.+|.+++.+. ...+|+..|+..+...|++.. --..+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876653 345899999999999998722 124678889999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q psy1863 257 FHKLQAIVPSMP---EVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 257 ~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 288 (425)
++.+++..|+.+ .++..++.+|..+|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999865 57888999999999988553
No 108
>KOG1127|consensus
Probab=99.33 E-value=1.3e-10 Score=113.65 Aligned_cols=181 Identities=13% Similarity=0.034 Sum_probs=157.5
Q ss_pred CCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863 149 NDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225 (425)
Q Consensus 149 g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (425)
.+...|...|-+++ +..+.++..||.+|....|...|..+|.+|.+++|.+..++-..+.+|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44777888888777 788899999999999999999999999999999999999999999999999999999999777
Q ss_pred HHhcCcCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 226 ALDNDATC--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 226 al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+-+..|-. ...|..+|..|...++..+|+..|+.+++.+|.+...|..+|.+|...|.+..|+..|.+ +..++|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k-As~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK-ASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh-hHhcCcHhH
Confidence 76666643 456778999999999999999999999999999999999999999999999999999999 999999988
Q ss_pred --HHHHHHh-----hHHHHHHHHHHHHhhcCCch
Q psy1863 304 --LSQLHRE-----MKHEAEKCILTSAKLIAPSI 330 (425)
Q Consensus 304 --~~~l~~~-----~~~~A~~~~~~a~~~~~~~~ 330 (425)
.+..+.+ .+.+|+..+...+.......
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222222 88888888888877654443
No 109
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=5.5e-11 Score=110.41 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
+...|...+..|+|++|+.+|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 283 DVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 283 ~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
++++|+..|++ ++.++|+++ ...++.+
T Consensus 85 ~~~eA~~~~~~-al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEK-GASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHH-HHHhCCCCHHHHHHHHHH
Confidence 99999999999 999999999 4444444
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.31 E-value=8.9e-11 Score=91.38 Aligned_cols=105 Identities=13% Similarity=0.209 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYN 239 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 239 (425)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+.+|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3456677777777777777777777777766655 4566777777777777777777777777766653 556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777777766544
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=5.2e-10 Score=102.25 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=139.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
....++..+..++..|++++|...+...+ |+++..+...+.++...++.++|.+.+++++..+|+.+..+.++|.++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 34456888999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (425)
+..|++.+|+..+...+..+|+++..|..||..|..+|+..+|...+ +..+...|++++|+..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999877666554 5566777999999999
Q ss_pred HHHHHHhcC-cchH-HHHH
Q psy1863 291 NENLLLEAV-RNDA-LSQL 307 (425)
Q Consensus 291 ~~~~a~~~~-p~~~-~~~l 307 (425)
+.. +.+.. .+.+ |...
T Consensus 448 l~~-A~~~~~~~~~~~aR~ 465 (484)
T COG4783 448 LMR-ASQQVKLGFPDWARA 465 (484)
T ss_pred HHH-HHHhccCCcHHHHHH
Confidence 999 87765 5555 4443
No 112
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.28 E-value=9.1e-10 Score=96.32 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS---SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFV 204 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 204 (425)
..+..+..|..++..|++++|+..|++++ |..+ .+.+.+|.+++..+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45556788999999999999999999998 4444 4558999999999999999999999999998775 5688
Q ss_pred HHHHHHHHhc------------------CHHHHHHHHHHHHhcCcCcHH---H--------------HHHHHHHHHHcCC
Q psy1863 205 NLGNCAMARE------------------DYVKGKELYVHALDNDATCIE---A--------------LYNLGLAHKHLNE 249 (425)
Q Consensus 205 ~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~---~--------------~~~la~~~~~~g~ 249 (425)
.+|.++...+ ...+|+..|++.++..|++.. + -...|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 8888865443 135788999999999998722 1 1357888999999
Q ss_pred HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 250 YSDSLECFHKLQAIVPSM---PEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 250 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
|..|+.-++.+++..|+. .++++.++..|..+|..++|......
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999999998865 46889999999999999999887665
No 113
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.28 E-value=6.9e-11 Score=105.88 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-- 214 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 214 (425)
+.+..|.++...|++++|++++.+. .+.++......+++..++++.|.+.++.+-+.+.+..-+....+.+.+..|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence 4466788888999999999888776 667777788899999999999999999999888887766666666776666
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV-EQASDVNEN 293 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~ 293 (425)
++.+|...|+......|.++..++.++.++..+|++++|...+.+++..+|.+++++.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 5999999999988888888999999999999999999999999999999999999999999999999998 667778888
Q ss_pred HHHhcCcchH-HHHH
Q psy1863 294 LLLEAVRNDA-LSQL 307 (425)
Q Consensus 294 ~a~~~~p~~~-~~~l 307 (425)
....+|+++ ...+
T Consensus 262 -L~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 262 -LKQSNPNHPLVKDL 275 (290)
T ss_dssp -CHHHTTTSHHHHHH
T ss_pred -HHHhCCCChHHHHH
Confidence 888899998 4444
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.7e-10 Score=89.82 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---PEVLYQ 273 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 273 (425)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 6789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+|.++...|++++|..++.+ ++...|+++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQ-VIKRYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHH-HHHHCcCCh
Confidence 99999999999999999999 999999887
No 115
>KOG2376|consensus
Probab=99.26 E-value=3.2e-08 Score=92.39 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD---------------------- 196 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------- 196 (425)
+..|.+.++.++.++|+.+++.+-+.........|.+++++|+|++|...|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 6889999999999999999995446666788889999999999999999999886553
Q ss_pred --------CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------cCc--------HHHHHHHHHHHHHcCCHHH
Q psy1863 197 --------TY-NSAAFVNLGNCAMAREDYVKGKELYVHALDND-------ATC--------IEALYNLGLAHKHLNEYSD 252 (425)
Q Consensus 197 --------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~--------~~~~~~la~~~~~~g~~~~ 252 (425)
|. +.+.++|.+.++...|+|.+|++.+++++.+. ..+ ..+...++.++..+|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 21 34557888888888888888888888885441 111 2356678888888888888
Q ss_pred HHHHHHHHHhhCCCCH
Q psy1863 253 SLECFHKLQAIVPSMP 268 (425)
Q Consensus 253 A~~~~~~al~~~p~~~ 268 (425)
|...|...++.+|.+.
T Consensus 243 a~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 8888888888887554
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=4.4e-08 Score=87.53 Aligned_cols=128 Identities=20% Similarity=0.120 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-NSAAFVNLGNCAM 211 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 211 (425)
......|..-+..|+|.+|.+...+.- +....++..-+......||++.|-.++.++-+..++ +..+....+.+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 344667888888999999999988876 344445555667788899999999999999988443 4567888889999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
..|+++.|..-..+++...|.++.+......+|.+.|++........+.-+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999888877766544
No 117
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.25 E-value=1.6e-10 Score=85.52 Aligned_cols=98 Identities=33% Similarity=0.464 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 247 (425)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34555666666666666666666666666666556666666666666666666666666666665555666666666666
Q ss_pred CCHHHHHHHHHHHHhhCC
Q psy1863 248 NEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 248 g~~~~A~~~~~~al~~~p 265 (425)
|++++|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 666666666666555544
No 118
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=6.1e-10 Score=90.98 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
++..|..|-..|-+.-|.-.|.+++.+.|..+.+++.+|..+...|+|+.|.+.|+..++++|....+..+.|..++--|
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 34445555555555555555666666666666666666666666666666666666666666665556666665555556
Q ss_pred CHHHHHHHHHHHHHhcCcchH----HHHHHHh--hHHHHHHHHHHHHhhcCCchhhHhhchHH-------HHHHHhHHh-
Q psy1863 283 DVEQASDVNENLLLEAVRNDA----LSQLHRE--MKHEAEKCILTSAKLIAPSIEDNFSNGYN-------WCVQSIRNS- 348 (425)
Q Consensus 283 ~~~~A~~~~~~~a~~~~p~~~----~~~l~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 348 (425)
+++-|.+.+.+ -.+.+|++| |..+... ++.+|...+.+-.+........+...++. .+.+.....
T Consensus 148 R~~LAq~d~~~-fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 148 RYKLAQDDLLA-FYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred chHhhHHHHHH-HHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 66666655555 555566655 3333333 55555544433333222222222211110 001111111
Q ss_pred ----hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 349 ----AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 349 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
.....-.+.++.+|..|...|+.++|...|+-+.
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1111234677889999999999999999999884
No 119
>KOG1128|consensus
Probab=99.25 E-value=1.5e-10 Score=110.22 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
++-....+|...|+..+|..+..+-+ +..+..|..+|.+.....-|++|.++.+.. +..+...+|......+
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 34456678888888888888877766 677777777777766665556665555443 3446666677777778
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
+|.++..+++..++++|-...+|+++|.+..+.++++.|..+|...+.+.|++..+|++++..|...|+..+|...+.+
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E- 578 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE- 578 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH-
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863 295 LLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI 326 (425)
Q Consensus 295 a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~ 326 (425)
+++.+-++. |.+...+ ..++|++.|.+.+.+.
T Consensus 579 AlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 888875555 4444333 7778888877776654
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=3.2e-10 Score=94.41 Aligned_cols=120 Identities=18% Similarity=0.108 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
+..+.+++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+.++++++...|.++.++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4556677778888888888888888888887766543 3567788888888888888888888888888877777778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+|.++...|+...+...+..++. .+++|.+++++ ++..+|++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~-a~~~~p~~~ 154 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQ-AIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHH-HHhhCchhH
Confidence 88888777775555544444332 24555566666 666665544
No 121
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=5e-11 Score=82.84 Aligned_cols=66 Identities=35% Similarity=0.576 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-EYSDSLECFHKLQAIVP 265 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 265 (425)
+.+|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555555555555555555555555555 45555555555555544
No 122
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.24 E-value=3.6e-10 Score=93.75 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
.....+++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.+|++++.++|.....+.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3446677888888888888888888888888776653 3578888888888888888888888888888888888888
Q ss_pred HHHHHH
Q psy1863 240 LGLAHK 245 (425)
Q Consensus 240 la~~~~ 245 (425)
+|.++.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 888887
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.23 E-value=2.3e-10 Score=84.64 Aligned_cols=99 Identities=32% Similarity=0.444 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (425)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcc
Q psy1863 282 GDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~ 301 (425)
|++++|...+.+ +++..|+
T Consensus 82 ~~~~~a~~~~~~-~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEK-ALELDPN 100 (100)
T ss_pred HhHHHHHHHHHH-HHccCCC
Confidence 999999999999 9888773
No 124
>KOG1915|consensus
Probab=99.22 E-value=2.4e-07 Score=84.51 Aligned_cols=277 Identities=12% Similarity=0.064 Sum_probs=222.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy1863 82 DALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC 161 (425)
Q Consensus 82 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 161 (425)
+.|+.+...++.+.+..|.... +....++.-|.--..++++..|..+++++
T Consensus 49 ~EL~eYq~RkRkefEd~irrnR-----------------------------~~~~~WikYaqwEesq~e~~RARSv~ERA 99 (677)
T KOG1915|consen 49 EELSEYQLRKRKEFEDQIRRNR-----------------------------LNMQVWIKYAQWEESQKEIQRARSVFERA 99 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4778888888888877665431 12334466677788889999999999999
Q ss_pred c---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHH
Q psy1863 162 D---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238 (425)
Q Consensus 162 ~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (425)
+ ..+...|...+.+-+.......|..++++|+.+-|.-...|+.....--.+|+...|.+.|++-+...|+ ..+|.
T Consensus 100 Ldvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~ 178 (677)
T KOG1915|consen 100 LDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWL 178 (677)
T ss_pred HhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHH
Confidence 9 6677889999999999999999999999999999999999999988888999999999999999999987 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-----HHHHHHh---
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-----LSQLHRE--- 310 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-----~~~l~~~--- 310 (425)
.....-.+.+..+.|...|++.+-.+| ....|...+..-...|+..-|...|+. |++...++. +...+..
T Consensus 179 sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~Vyer-Aie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYER-AIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999998887 678899999999999999999999999 999877665 3334443
Q ss_pred --hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHH-------------HhH------HhhchhhhcHHHHHHHHHHHhcC
Q psy1863 311 --MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQ-------------SIR------NSAHSSLAQDLEINKAVTFLRMN 369 (425)
Q Consensus 311 --~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~~~------~~~~~~~~~~~~~~la~~~~~~g 369 (425)
.++.|...|+-+++..|.+-......+|..... +.. .....+++-+.|+..-.+-...|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 788889999999999998855444333322211 111 12334556688888888888899
Q ss_pred CHHHHHHHHHHHHhhccCCcc
Q psy1863 370 DVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 370 ~~~~A~~~~~~~~~~~~~~~~ 390 (425)
+.+.-.++|+++....|....
T Consensus 337 ~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASE 357 (677)
T ss_pred CHHHHHHHHHHHHccCCchhH
Confidence 999999999999755544433
No 125
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.22 E-value=2.9e-10 Score=102.44 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=131.5
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYN-- 199 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~-- 199 (425)
.+.+++...|..|...|++++|...|.++. ...+.++...+.+|... ++++|+.++++++.+. .+.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 356677788899999999999999999987 33345667777777665 9999999999999874 222
Q ss_pred --HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q psy1863 200 --SAAFVNLGNCAMAR-EDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--- 267 (425)
Q Consensus 200 --~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 267 (425)
..++..+|.+|... |++++|+++|++++..... ....+..+|.++...|+|++|++.|++.....-++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 35688999999998 9999999999999987321 14577899999999999999999999998754321
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 268 ----PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 268 ----~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
...+...+.|+...||+..|...+++ ....+|+..
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~-~~~~~~~F~ 230 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALER-YCSQDPSFA 230 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HGTTSTTST
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCC
Confidence 13456788899999999999999999 998888654
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=3.6e-10 Score=93.74 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=94.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHcCCHHHH
Q psy1863 179 QGEVEQAEKMAEEACTADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT---CIEALYNLGLAHKHLNEYSDS 253 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A 253 (425)
.+.+..+...+...++..+.. ..+++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344556666665555555544 567899999999999999999999999988765 356899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHH
Q psy1863 254 LECFHKLQAIVPSMPEVLYQIASLYE-------ITGDVEQASDVNEN 293 (425)
Q Consensus 254 ~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~ 293 (425)
+..+++++.+.|.....+.++|.++. ..|+++.|...+.+
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999988 67777755555444
No 127
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=5.7e-11 Score=82.55 Aligned_cols=67 Identities=37% Similarity=0.442 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCc
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDA 231 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 231 (425)
++.+|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999987
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=4.5e-10 Score=93.50 Aligned_cols=120 Identities=21% Similarity=0.306 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
+....+++.+|..+...|++++|+.+|++++...|+. ..++.++|.++...|++++|+..+.+++...|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4556779999999999999999999999999887653 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHhhcCCch
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSI 330 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a~~~~~~~~ 330 (425)
+|.++...|+...+...+.. ++. .+.+|.+++++++...|++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~-A~~-------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDE-AEA-------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCChHhHhhCHHH-HHH-------------HHHHHHHHHHHHHhhCchhH
Confidence 99999999998877777766 543 35678899999999998874
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.18 E-value=7.4e-09 Score=90.59 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=119.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDATC---IEA 236 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~ 236 (425)
...+..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4567778899999999999999999999999999998755 4899999999999999999999999998876 668
Q ss_pred HHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHc
Q psy1863 237 LYNLGLAHKHLN------------------EYSDSLECFHKLQAIVPSMPEV-----------------LYQIASLYEIT 281 (425)
Q Consensus 237 ~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~ 281 (425)
++.+|.++...+ ...+|+..|++.++..|++..+ -+.+|..|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899998865544 1357889999999999976431 13567788999
Q ss_pred CCHHHHHHHHHHHHHhcCcchH
Q psy1863 282 GDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|.+..|+.-++. +++..|+.+
T Consensus 189 ~~y~AA~~r~~~-v~~~Yp~t~ 209 (243)
T PRK10866 189 GAYVAVVNRVEQ-MLRDYPDTQ 209 (243)
T ss_pred CchHHHHHHHHH-HHHHCCCCc
Confidence 999999999999 999999877
No 130
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=1.3e-07 Score=84.53 Aligned_cols=185 Identities=15% Similarity=0.061 Sum_probs=150.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD------------------ 196 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------ 196 (425)
.+..+......|+++.|..-..++. |.++.+....-.+|...|++.+......+.-+..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 3778899999999999999988888 8999999999999999999998887776654331
Q ss_pred ------------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q psy1863 197 ------------------------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252 (425)
Q Consensus 197 ------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 252 (425)
..++.....++.-+..+|+.++|.+..+++++..-+ +.....++ ...-+++..
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~ 312 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEP 312 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchH
Confidence 233555667777888999999999999999987543 22222222 245678888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE-----MKHEAEKCILTSAKLI 326 (425)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~ 326 (425)
=++..++.++..|+++..+..||..+.+.+.+.+|..+|+. +++..|+.. +..++.. +..+|.+.+++++...
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea-Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA-ALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH-HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999 999998887 7777776 8888888888887543
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.18 E-value=2.6e-09 Score=86.13 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=79.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYS 251 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 251 (425)
..++...+...++..++.+|++ ..+.+.+|.+++..|++++|...|+.++...|+. +.+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777777777777777776 3456667777777777777777777777766543 346667777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295 (425)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a 295 (425)
+|+..++. +...+-.+.++..+|.++...|++++|+..|++ +
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~-A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK-A 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH-h
Confidence 77777755 223333455666777777777777777777776 5
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-09 Score=94.90 Aligned_cols=122 Identities=20% Similarity=0.104 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q psy1863 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECF 257 (425)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 257 (425)
..+.-+.-++.-+..+|++..-|..||.+|+.+|+++.|...|.+++++.|+++..+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 45677778888899999999999999999999999999999999999999999999999999887654 456899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++++..+|.+..+.+.||..+...|++.+|+..++. .++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~-lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM-LLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcCCCCC
Confidence 999999999999999999999999999999999999 888776655
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.16 E-value=2.6e-09 Score=91.26 Aligned_cols=138 Identities=21% Similarity=0.176 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALY 238 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 238 (425)
.+..++..|..++..|++.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++.+|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 56788999999999999999999999999998876 4779999999999999999999999999998876 56888
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy1863 239 NLGLAHKHLN-----------EYSDSLECFHKLQAIVPSMPEV-----------------LYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 239 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~ 290 (425)
.+|.+++.+. ...+|+..|+..+...|++..+ -+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8999876543 3458999999999999976532 24567888889999999999
Q ss_pred HHHHHHhcCcchH
Q psy1863 291 NENLLLEAVRNDA 303 (425)
Q Consensus 291 ~~~~a~~~~p~~~ 303 (425)
++. +++..|+.+
T Consensus 164 ~~~-v~~~yp~t~ 175 (203)
T PF13525_consen 164 FQY-VIENYPDTP 175 (203)
T ss_dssp HHH-HHHHSTTSH
T ss_pred HHH-HHHHCCCCc
Confidence 999 999999887
No 134
>KOG3785|consensus
Probab=99.16 E-value=1.9e-08 Score=88.31 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------C-
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------------D- 196 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~- 196 (425)
.++.+.+|.+++..|+|++|...|.-+. ...+..+.+|+.+++..|.|.+|.....++-+. +
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 4556788999999999999999999887 455678999999999999999998877665321 1
Q ss_pred -----------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 197 -----------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 197 -----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
.+..+-...++.+....-.|.+|+..|.+++..+|+......+++.||.++.-|+-+.+.+.-.++..|
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 122233567788888888999999999999999999988889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q psy1863 266 SMPEVLYQIASLYEIT 281 (425)
Q Consensus 266 ~~~~~~~~la~~~~~~ 281 (425)
+++.+...++....++
T Consensus 217 dStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRL 232 (557)
T ss_pred CcHHHHHHHHHHHhhh
Confidence 9998888777766554
No 135
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=1.6e-10 Score=83.72 Aligned_cols=80 Identities=29% Similarity=0.389 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 179 QGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
+|++++|+.+++++++..|. +...++.+|.+++..|+|++|+..+++ ...+|.++...+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666653 234455566666666666666666666 555555555555666666666666666666
Q ss_pred HHH
Q psy1863 257 FHK 259 (425)
Q Consensus 257 ~~~ 259 (425)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=2.1e-09 Score=96.45 Aligned_cols=185 Identities=18% Similarity=0.116 Sum_probs=145.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
.++..+...++-+.++..++..+ +.++.+....|.++...|++++|++.+.+. .+.+.......++...+
T Consensus 71 ~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~ 145 (290)
T PF04733_consen 71 LLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMN 145 (290)
T ss_dssp HHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcC
Confidence 33444444457777888777766 245566677788899999999999988764 67788888899999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN--EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNE 292 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (425)
+++.|.+.++.+-+.+++..-+....+.+....| ++++|.-.|++.....|.++..+..++.++..+|++++|...+.
T Consensus 146 R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp -HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999888777666666666666666 69999999999888888899999999999999999999999999
Q ss_pred HHHHhcCcchH--HHHHHHh------hHHHHHHHHHHHHhhcCCch
Q psy1863 293 NLLLEAVRNDA--LSQLHRE------MKHEAEKCILTSAKLIAPSI 330 (425)
Q Consensus 293 ~~a~~~~p~~~--~~~l~~~------~~~~A~~~~~~a~~~~~~~~ 330 (425)
+ ++..+|.++ +.++..+ ..+.+.+++.+.....|...
T Consensus 226 ~-al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 226 E-ALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp H-HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred H-HHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 9 999999999 7777666 33567778888887888765
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=99.14 E-value=2.6e-09 Score=84.75 Aligned_cols=103 Identities=16% Similarity=0.280 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
+..-+..+..|.-++..|++++|...|+-....+|.++..+..||.|+..+|+|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 45567778888888889999999999988888889898889999999999999999999999988888888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
|++.+|+.+.|+.+|..++. .|.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 99999999999999888887 344
No 138
>KOG2376|consensus
Probab=99.14 E-value=2e-08 Score=93.70 Aligned_cols=230 Identities=11% Similarity=0.037 Sum_probs=146.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (425)
-..+...|+|++|.+...+++ |+...+...--.+....++|++|+...+.-......+ ...+..+.|.+++++.++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHH
Confidence 445667788888888888887 7888888888888888888888885444322211111 112677888888888888
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
|+.+++ ..++.+..+....|.+++++|+|++|...|+..++.+.++.+.-......-... --.+ + ..+ .+..
T Consensus 98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~-~-~~q-~v~~ 169 (652)
T KOG2376|consen 98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQV-Q-LLQ-SVPE 169 (652)
T ss_pred HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhH-H-HHH-hccC
Confidence 888888 455666777888888888888899988888888777665544433222211110 0001 1 233 3444
Q ss_pred CcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCC
Q psy1863 299 VRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMND 370 (425)
Q Consensus 299 ~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 370 (425)
.|++. +++.+-. ++.+|++.+++++++........-. ....+......+...++-++..+|+
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~----------~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDT----------NEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccc----------chhhHHHHHHHHHHHHHHHHHHhcc
Confidence 45433 4444333 7888888888776554322110000 0011111123567789999999999
Q ss_pred HHHHHHHHHHHHhhccCCcc
Q psy1863 371 VSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 371 ~~~A~~~~~~~~~~~~~~~~ 390 (425)
-++|..+|..+.+..+.+..
T Consensus 240 t~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred hHHHHHHHHHHHHhcCCCch
Confidence 99999999999876665543
No 139
>KOG1941|consensus
Probab=99.14 E-value=2.7e-08 Score=87.57 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS------ 200 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------ 200 (425)
-+.+++++..+.+..+|.+++.+-+..+ ..-..+...+|..+..++.++++++.|+.|++....+.
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 3445788888888888999998877766 12345677899999999999999999999998764432
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDAT----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP----- 265 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----- 265 (425)
.++..+|..|....++++|..+..++.++..+ ...+++.++..+..+|...+|.++++++.++.-
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 56889999999999999999999999887322 145778999999999999999999999977632
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy1863 266 -SMPEVLYQIASLYEITGDVEQASDVNENLLLEAV 299 (425)
Q Consensus 266 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~ 299 (425)
-.......+|.+|...|+.+.|..-|+. +....
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~-Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQ-AMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHH-HHHHH
Confidence 2345677899999999999999999999 87653
No 140
>KOG0543|consensus
Probab=99.13 E-value=1.5e-09 Score=97.42 Aligned_cols=123 Identities=24% Similarity=0.324 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTY---------------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (425)
.-|..|++.|+|..|...|++++..-+. -..++.|++.|+.++++|.+|+..+.++|.++|++..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 4455555555555555555555543211 1235777777788888888888888888888877788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNEN 293 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 293 (425)
+++..|.++..+|+|+.|+..|++++++.|++-.+...+..+..+...+.+. ...|.+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887777777777776655444333 455555
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.13 E-value=6.5e-09 Score=100.58 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=117.8
Q ss_pred cchHHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhc
Q psy1863 163 EMTSSA--ATNLSFIYFLQGE---VEQAEKMAEEACTADTYNSAAFVNLGNCAMAR--------EDYVKGKELYVHALDN 229 (425)
Q Consensus 163 ~~~~~~--~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~ 229 (425)
|.++.+ ++..|.-+...++ +..|+.+|+++++++|+++.++..++.++... ++...+....++++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 444444 4566777766555 78999999999999999999999988887654 2345667777776664
Q ss_pred --CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 230 --DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 230 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+|..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++ |+.++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~-A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST-AFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCc
Confidence 777788999999999999999999999999999999 578999999999999999999999999 999999988
No 142
>KOG0543|consensus
Probab=99.13 E-value=1.6e-09 Score=97.19 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (425)
.-..|..+++.|+|..|...|++++ .....++.+++.|+.++++|.+|+..+.++|..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3567999999999999999999987 1234578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCC
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS-LECFHKLQAIVP 265 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 265 (425)
..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+..+..++.+. .+.|..++...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999888877666554 778888876654
No 143
>PRK15331 chaperone protein SicA; Provisional
Probab=99.13 E-value=1.2e-09 Score=86.58 Aligned_cols=107 Identities=6% Similarity=-0.026 Sum_probs=99.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
+.++.....+..|.-++..|++++|...|+-....+|.++..+..||.|+..+|+|++|+..|..+..+++++|...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34555677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|.|+..+|+.+.|..+|.. ++. .|.+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~-a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFEL-VNE-RTEDE 138 (165)
T ss_pred HHHHHHhCCHHHHHHHHHH-HHh-CcchH
Confidence 9999999999999999999 887 46655
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.12 E-value=1.1e-08 Score=92.35 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC--
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQ-GEVEQAEKMAEEACTADT--YN-- 199 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p--~~-- 199 (425)
+...+...+.++.+. ++++|+.+|++++ ..-+.++..+|.+|... |++++|+++|++|++... +.
T Consensus 74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 344445555555444 8888998888887 33467888999999999 999999999999998742 22
Q ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--
Q psy1863 200 --SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-- 268 (425)
Q Consensus 200 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 268 (425)
..++..+|.++...|+|++|++.|+++....-++ ...+...+.|++..|++..|...+++....+|...
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2457899999999999999999999998763221 24567788999999999999999999999988543
Q ss_pred ---HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC
Q psy1863 269 ---EVLYQIASLYEI--TGDVEQASDVNENLLLEAV 299 (425)
Q Consensus 269 ---~~~~~la~~~~~--~g~~~~A~~~~~~~a~~~~ 299 (425)
.....|..++.. ...++.|+.-|.. ..+++
T Consensus 233 ~E~~~~~~l~~A~~~~D~e~f~~av~~~d~-~~~ld 267 (282)
T PF14938_consen 233 REYKFLEDLLEAYEEGDVEAFTEAVAEYDS-ISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHCHHHTT-SS---
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcc-cCccH
Confidence 234445555443 3567777777777 44443
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=4.3e-08 Score=94.33 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
..++......++...|++++|++++.+....-++...+.-..|.++..+|++++|...|+..+..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45677788899999999999999999988888999999999999999999999999999999999999999999888887
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHH
Q psy1863 245 KHLN-----EYSDSLECFHKLQAIVPS--------------------------------MPEVLYQIASLYEITGDVEQA 287 (425)
Q Consensus 245 ~~~g-----~~~~A~~~~~~al~~~p~--------------------------------~~~~~~~la~~~~~~g~~~~A 287 (425)
.... ..+.-...|++.....|. .|..+.++-.+|....+..-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 4333 456667777777666652 122223333333321111111
Q ss_pred HHHHHHH--HHhc-------------CcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHH
Q psy1863 288 SDVNENL--LLEA-------------VRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQS 344 (425)
Q Consensus 288 ~~~~~~~--a~~~-------------~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 344 (425)
...+... .++. .|... +..++.. ++++|+.++++++...|..++.+...|-.+-..+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 1122220 1110 11111 2344444 8889999999999999988877666653222222
Q ss_pred hHHhhchhh---------hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863 345 IRNSAHSSL---------AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMT 385 (425)
Q Consensus 345 ~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 385 (425)
....+.... ..-+-...+..+++.|++++|.+.+..|-+..
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 222222111 22233347888899999999999999995444
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.12 E-value=4.5e-09 Score=84.75 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCA 210 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 210 (425)
..+......++...+...++.++ |.. ..+...+|.+++..|++++|...|+.++...|+. +.+.+.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34445557889998888888887 444 6778889999999999999999999999987665 35688899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999976 33444557788899999999999999999999874
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.11 E-value=5e-10 Score=76.67 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (425)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44455555555555555555555555555555555555555555555555555555555543
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.10 E-value=3e-10 Score=82.21 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=72.6
Q ss_pred hcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 213 REDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (425)
+|+|++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ ...+|.++...+.+|.|+..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999984 567788899999999999999999999 888888889999999999999999999999
Q ss_pred HHH
Q psy1863 291 NEN 293 (425)
Q Consensus 291 ~~~ 293 (425)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 987
No 149
>KOG2047|consensus
Probab=99.09 E-value=8e-07 Score=84.06 Aligned_cols=195 Identities=9% Similarity=0.107 Sum_probs=158.4
Q ss_pred HHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHH
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY----NSAAFVNLGNC 209 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~ 209 (425)
.+-+..|+..+-+..|.+++ ......|..+|..|...|+.+.|...|+++....-. -..+|...|..
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 45566788888899998888 233567899999999999999999999999987632 25789999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDAT------------------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
-....+++.|+++.+.+...... +..+|..++...-..|=++.....|++.+.+.--.|...
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999865211 245778888888899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH----HHH--------HHHhhHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA----LSQ--------LHREMKHEAEKCILTSAKLIAPSIEDNFSNGY 338 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~----~~~--------l~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 338 (425)
.+.|..+....-++++.+.|++ .+.+.|-.. |.. +|....+.|...|+++++..|+...-...+.|
T Consensus 515 ~NyAmfLEeh~yfeesFk~YEr-gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYER-GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHc-CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999 998865322 221 12228899999999999999865544444433
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.2e-09 Score=91.39 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=100.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE---DYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
|.++..|..||.+|+.+|+++.|...|.+++++.|+++..+..+|.++..+. .-.++...+++++..+|++..+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654 3678999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (425)
||..++..|+|.+|+..++..+...|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999988654
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=5.9e-10 Score=76.33 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (425)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999875
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.06 E-value=8.9e-09 Score=90.72 Aligned_cols=105 Identities=9% Similarity=0.108 Sum_probs=72.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHH
Q psy1863 166 SSAATNLSFIY-FLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALY 238 (425)
Q Consensus 166 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 238 (425)
....+..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++..+|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555554 45677777777777777777766 4667777777777777777777777777766653 66677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
.+|.++..+|++++|...|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77777777777777777777777777765543
No 153
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=1.9e-07 Score=98.79 Aligned_cols=286 Identities=15% Similarity=0.071 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---cc---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---EM---------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---- 200 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 200 (425)
+....+..+...|++++|...+..+. +. ...+...+|.++...|++++|...+++++...|...
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 34566888889999999999888765 11 234556678888999999999999999988544322
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------
Q psy1863 201 -AAFVNLGNCAMAREDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------- 266 (425)
Q Consensus 201 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 266 (425)
.+...+|.++...|++++|...+++++..... ...++.++|.++...|++++|...+.+++.....
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 34677888999999999999999999876332 1346678899999999999999999998876321
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc----hH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 267 -MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN----DA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 267 -~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~----~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
....+..+|.++...|++++|...+.+ ++..... .. +..++.+ +++.|...+.++..+.+......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARK-GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHH-hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 123456788889999999999999999 8775322 11 3344444 88999999988877644321100
Q ss_pred hhc------h-HHHHHHHhHHhhc-------------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---
Q psy1863 334 FSN------G-YNWCVQSIRNSAH-------------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--- 390 (425)
Q Consensus 334 ~~~------~-~~~~~~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 390 (425)
... . ..+...+....+. ..........++.++...|++++|+..+.++.........
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 000 0 0000000100000 0001122456888999999999999999988654322222
Q ss_pred chhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 391 NLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 391 ~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
.......+...........+|..++.+++++..
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 222222333333444467788888888887654
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.03 E-value=1.1e-08 Score=90.11 Aligned_cols=104 Identities=12% Similarity=0.164 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHH
Q psy1863 199 NSAAFVNLGNCA-MAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS---MPEVL 271 (425)
Q Consensus 199 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 271 (425)
.....+..+..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|++++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346677777776 66799999999999999999987 689999999999999999999999999999887 56899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+.+|.++..+|++++|...|++ +++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~-vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQ-VIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCH
Confidence 9999999999999999999999 999999887
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.03 E-value=1.2e-08 Score=78.00 Aligned_cols=96 Identities=21% Similarity=0.138 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC---cHHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT---CIEALYNL 240 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l 240 (425)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567788888888888888888888888765433 456788888888888888888888888887777 66777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy1863 241 GLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 241 a~~~~~~g~~~~A~~~~~~al~ 262 (425)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877664
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=99.02 E-value=2.2e-08 Score=92.33 Aligned_cols=134 Identities=14% Similarity=0.049 Sum_probs=118.8
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCcCc
Q psy1863 169 ATNLSFIYFLQGE---VEQAEKMAEEAC---TADTYNSAAFVNLGNCAMAR---------EDYVKGKELYVHALDNDATC 233 (425)
Q Consensus 169 ~~~lg~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~ 233 (425)
.+..|...+..+. .+.|+.+|.+++ .++|....++..++.|++.. ....+|....+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3666666655553 467888999999 99999999999999998764 24568899999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+.++..+|.+....|+++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.+++ +++++|.-.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~-alrLsP~~~ 406 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK-SLQLEPRRR 406 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH-HhccCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999 999999765
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=99.01 E-value=3.9e-08 Score=90.72 Aligned_cols=155 Identities=10% Similarity=0.063 Sum_probs=130.1
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHhcc------cchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q psy1863 139 INKAVTFLRMN---DVSQAVDVLKSCD------EMTSSAATNLSFIYFLQ---------GEVEQAEKMAEEACTADTYNS 200 (425)
Q Consensus 139 ~~~a~~~~~~g---~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 200 (425)
+..|...+..+ ..+.|..+|.+++ |..+.++..++.|++.. .+..+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 56677776665 4567888899988 77789999999998764 345678999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-HHHHHHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY-QIASLYE 279 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~ 279 (425)
.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-. .+-.-.+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997655433 3333133
Q ss_pred HcCCHHHHHHHHHH
Q psy1863 280 ITGDVEQASDVNEN 293 (425)
Q Consensus 280 ~~g~~~~A~~~~~~ 293 (425)
-....+.|+.+|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 44567788887766
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=2.9e-08 Score=96.16 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHhcc---cchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--CCCCH
Q psy1863 137 LEINKAVTFLRMND---VSQAVDVLKSCD---EMTSSAATNLSFIYFLQG--------EVEQAEKMAEEACTA--DTYNS 200 (425)
Q Consensus 137 ~~~~~a~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~--~p~~~ 200 (425)
-.+..|..++..++ +..|+.+|++++ |+.+.++..++.++.... +...+.....+++.. +|..+
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 34566888877655 889999999999 999999999888876542 345666667776664 77788
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
.++..+|......|++++|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 89999999999999999999999999999995 889999999999999999999999999999998775
No 159
>KOG4340|consensus
Probab=99.00 E-value=1.9e-08 Score=86.30 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=107.0
Q ss_pred HHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863 146 LRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL 222 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 222 (425)
.+..+|..||+++.... |.+...+..+|.||+...+|..|..+|++.-...|......+..+..+.+.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55666777777766555 555666777777777777777777777777777777766666666666666666666655
Q ss_pred HHHHHhc------------------------------Cc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 223 YVHALDN------------------------------DA--TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 223 ~~~al~~------------------------------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
....... -| +.+....+.|.+.++.|+++.|++-|+.+++...-++..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 4443321 12 345667777888888888888888888888887777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
-++++.++.+.|++..|+.+..+ .++.
T Consensus 181 AYniALaHy~~~qyasALk~iSE-IieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISE-IIER 207 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH-HHHh
Confidence 78888888888888888877777 5543
No 160
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=1.4e-06 Score=92.33 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 356 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
.+...+|.++...|+.++|...+.++.....
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 4566789999999999999999999976553
No 161
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.96 E-value=2.1e-07 Score=79.27 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=138.7
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---A 202 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 202 (425)
....+.+++.|...++.|++++|+..|+.+. |....+...++.++++.+++++|+...++.+.+.|.++. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3456677899999999999999999999988 666789999999999999999999999999999988764 5
Q ss_pred HHHHHHHHHHh--------cCHHHHHHHHHHHHhcCcCcHH-----------------HHHHHHHHHHHcCCHHHHHHHH
Q psy1863 203 FVNLGNCAMAR--------EDYVKGKELYVHALDNDATCIE-----------------ALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 203 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~ 257 (425)
++..|.+++.. .-..+|+..|+..+...|++.. --..+|..|.+.|.+-.|+.-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 77778776643 2356788899999999998621 1145788999999999999999
Q ss_pred HHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 258 HKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 258 ~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+.+++..|+.. .++..+..+|..+|-.++|...-.- ...-.|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCCc
Confidence 99999887654 5788888999999999999776554 333345544
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.95 E-value=2.8e-08 Score=92.07 Aligned_cols=120 Identities=23% Similarity=0.163 Sum_probs=101.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 250 (425)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3444555678889999999998888765 5566888888888889999999999988888888888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+.|+.+.++++...|+.-..|+.|+.+|..+|+++.|+..+..
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999877665
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.91 E-value=7.3e-08 Score=89.35 Aligned_cols=120 Identities=17% Similarity=0.232 Sum_probs=110.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK 220 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 220 (425)
+-..+...++++.|+.++++.....+.+...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 34455667899999999999986667888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
.+.++++...|+....|+.|+.+|..+|+++.|+..++.+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999877643
No 164
>KOG4340|consensus
Probab=98.90 E-value=5.2e-07 Score=77.69 Aligned_cols=207 Identities=14% Similarity=0.051 Sum_probs=156.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------------------- 195 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------- 195 (425)
.-.+|.+|+...+|..|..+|++.- |.........+..++..+.+.+|+.+.......
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~ 126 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEG 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccc
Confidence 3567999999999999999999876 777777777888888888888887765443321
Q ss_pred -----------CC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 196 -----------DT--YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 196 -----------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
-| +.+...++.|.+.++.|+++.|++-|+.+++...-++-.-++++.++++.|++..|+++..+.++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 13 45677899999999999999999999999999888889999999999999999999998877765
Q ss_pred h----CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc-----hH--HHH
Q psy1863 263 I----VPS----------------M---------PEVLYQIASLYEITGDVEQASDVNENLLLEAVRN-----DA--LSQ 306 (425)
Q Consensus 263 ~----~p~----------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~-----~~--~~~ 306 (425)
. +|. + ..+++..+-++.+.|+++.|.+.+.. +-|. +| +.+
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD----mPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD----MPPRAEEELDPVTLHN 282 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc----CCCcccccCCchhhhH
Confidence 4 341 1 12455567788999999999876655 3332 22 777
Q ss_pred HHHh----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863 307 LHRE----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS 348 (425)
Q Consensus 307 l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (425)
++.. ++-....-+.-.+.++|-..+...++.+.+|.......
T Consensus 283 ~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 283 QALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred HHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 7766 55566666666777788555555566666776655543
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.90 E-value=4.5e-08 Score=74.93 Aligned_cols=92 Identities=17% Similarity=0.033 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY---NSAAFVNLG 207 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 207 (425)
+.++.|..+-..|+.++|+.+|++++ +....++..+|.++...|++++|+..+++++...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45889999999999999999999999 445679999999999999999999999999999888 778888899
Q ss_pred HHHHHhcCHHHHHHHHHHHHh
Q psy1863 208 NCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~ 228 (425)
.++...|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988775
No 166
>KOG1915|consensus
Probab=98.88 E-value=6.5e-05 Score=69.13 Aligned_cols=283 Identities=14% Similarity=0.086 Sum_probs=183.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMA 212 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~ 212 (425)
+...-..-++.+..+.|..+|++.+ ......|...+..-...|...-|..+|++|++.-.++. ......|..-..
T Consensus 177 W~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 177 WLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444555667788999999999988 55566788888888899999999999999998765543 335555666667
Q ss_pred hcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCC---HHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 213 REDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNE---YSDSLE-----CFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~---~~~A~~-----~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
++.++.|...|+-++..-|.+ ...+......--+-|+ .++++. -|++.++.+|.+.++|+..-.+-...|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 889999999999999988876 3333333333333344 234433 467778889999999999888888889
Q ss_pred CHHHHHHHHHHHHHhcCcchH----H-------HHHHHh------hHHHHHHHHHHHHhhcCCchhhHhh----------
Q psy1863 283 DVEQASDVNENLLLEAVRNDA----L-------SQLHRE------MKHEAEKCILTSAKLIAPSIEDNFS---------- 335 (425)
Q Consensus 283 ~~~~A~~~~~~~a~~~~p~~~----~-------~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~---------- 335 (425)
+.+.-.+.|++ |+...|... | .+.+.. +.+.+.+.|+.++++.|..--+...
T Consensus 337 ~~~~Ire~yEr-AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 337 DKDRIRETYER-AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CHHHHHHHHHH-HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 99999999999 888777544 2 222222 7788888999999988865321110
Q ss_pred -----------ch--------------HH----------HHHHHhH-HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHH
Q psy1863 336 -----------NG--------------YN----------WCVQSIR-NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK 379 (425)
Q Consensus 336 -----------~~--------------~~----------~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 379 (425)
+| |. .|..-.. .....|-+...|...|.+-...|+.+.|..+|+
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 00 11 1111000 122333355667777888888888888888888
Q ss_pred HHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHh
Q psy1863 380 SCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVL 422 (425)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~ 422 (425)
-+.+...-....+-+-.++ .-+........+-..++.+|..-
T Consensus 496 lAi~qp~ldmpellwkaYI-dFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYI-DFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhcCcccccHHHHHHHhh-hhhhhcchHHHHHHHHHHHHHhc
Confidence 8754333222222222222 11222234445555666555543
No 167
>KOG4234|consensus
Probab=98.88 E-value=4.6e-08 Score=79.13 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
.+-.-|.-++..|+|++|..-|..|+...|..+ ..+.+.|.++++++.++.|+..+.++++++|++..++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344567777888888888888888888887654 346777888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
+|.++.+|++|++.|++.+..+|....+.-.++.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888888888866555444443
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.86 E-value=1.1e-08 Score=70.75 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=33.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555544444433
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.85 E-value=1.1e-08 Score=70.75 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=45.1
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
+..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777766655555443
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.83 E-value=1.8e-07 Score=72.71 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
.++.-|...+..|+|++|++.|+......|.. ..+...+|.+|+..|++++|+..+++-++++|+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33344444444444444444444444443322 233444444444444444444444444444443
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.82 E-value=2.9e-08 Score=69.68 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=34.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
.+|+..+++++|+.++++++..+|+++..+...|.++..+|++++|+..++++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555444443
No 172
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.81 E-value=1.4e-07 Score=73.26 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HH
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AA 202 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 202 (425)
......++..|...+..|+|.+|++.|+.+. +-...+...+|.+|+..|++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3445566888999999999999999999988 55678999999999999999999999999999998876 56
Q ss_pred HHHHHHHHHHhcC
Q psy1863 203 FVNLGNCAMARED 215 (425)
Q Consensus 203 ~~~la~~~~~~g~ 215 (425)
++..|.+++.+..
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887765
No 173
>KOG4234|consensus
Probab=98.80 E-value=6.2e-08 Score=78.41 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
+-.-|+-++..|+|++|..-|..++.+.|.. ...|.|.|.+..+++.++.|+..+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 4456888999999999999999999999976 34678999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 278 YEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 278 ~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|.++..+++|+..|.+ .++.+|...
T Consensus 178 yek~ek~eealeDyKk-i~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKK-ILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHH-HHHhCcchH
Confidence 9999999999999999 999999866
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=4.1e-08 Score=68.86 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=64.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
|..+|...+++++|+.++++++..+|+++..+...|.++..+|++.+|+..++++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999887765544
No 175
>KOG2047|consensus
Probab=98.79 E-value=1.2e-05 Score=76.33 Aligned_cols=251 Identities=12% Similarity=0.132 Sum_probs=184.1
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT------- 197 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------- 197 (425)
.....++...|..|-..|+.+.|..+|+++. .+.+.+|..-|..-+...+++.|+++.+.|...-.
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 3346788899999999999999999999998 45578999999999999999999999999875421
Q ss_pred -----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-
Q psy1863 198 -----------YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP- 265 (425)
Q Consensus 198 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 265 (425)
.+..+|..++......|-++.....|++.+.+.--.|..-.|.|..+....-+++|.+.|++.+.+.|
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 12345888888888899999999999999999888899999999999999999999999999999874
Q ss_pred -CCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHhcCcchH----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863 266 -SMPEVLYQIAS---LYEITGDVEQASDVNENLLLEAVRNDA----LSQLHRE-----MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 266 -~~~~~~~~la~---~~~~~g~~~~A~~~~~~~a~~~~p~~~----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
...++|...-. .-+.--..+.|...|++ +++..|... +...+.+ -...|+..|+++-...+.....
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEq-aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l 622 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ-ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRL 622 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHH
Confidence 44455543322 22333578999999999 999988544 3333333 3455667777765544332221
Q ss_pred HhhchHHHHHH------------HhHHhhchhh----hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 333 NFSNGYNWCVQ------------SIRNSAHSSL----AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 333 ~~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
.. |+-++. .+++.+...+ ...+.+.-|..-.+.|..+.|..+|.-..+.-+
T Consensus 623 ~m---yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 623 DM---YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HH---HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 11 111111 2223333333 234555678888899999999999988765443
No 176
>KOG4648|consensus
Probab=98.76 E-value=4.2e-08 Score=85.82 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY 216 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 216 (425)
..|+.|+++|+|++|+.||.+.+ |.++..+.+.+..|+++..|..|..-+..|+.++.....+|...|..-..+|..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45666777777777777776666 666666666677777777777776666666666666666666666666666777
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
.+|.+.++.++.+.|++.+....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHH
Confidence 7777777777777666554443333
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=3.6e-07 Score=78.62 Aligned_cols=103 Identities=16% Similarity=0.249 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHH
Q psy1863 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGL 242 (425)
Q Consensus 169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~ 242 (425)
.+..|.-++..|+|..|...|...++..|++ +.+++-||.+++.+|+|++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4556666666666666666666666666554 3556666666666666666666666666655543 455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
+...+|+.++|...|+++++..|+.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 66666666666666666666666555443
No 178
>KOG1941|consensus
Probab=98.75 E-value=9.2e-07 Score=78.18 Aligned_cols=235 Identities=17% Similarity=0.130 Sum_probs=167.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC--CHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD----TY--NSAAFVNL 206 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l 206 (425)
+..|.-++...++++|+....+.+ .....++-.+..+...+|.|++++.+--..++.. .. ...++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999999888887 2333455566778888999998887655544432 11 23678999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------EVLYQIA 275 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la 275 (425)
+..+....++.+++.+.+..+.+.... ..+...+|.++..++.++++++.|++++++..++. .++..||
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 999999999999999988888774333 35677899999999999999999999998855432 4788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCcchH------------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863 276 SLYEITGDVEQASDVNENLLLEAVRNDA------------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGY 338 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~------------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 338 (425)
.++..+.|+++|..+..+ +.++..+.. +..++.. ..-.|.++.+++.++.-.
T Consensus 170 slf~~l~D~~Kal~f~~k-A~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---------- 238 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCK-AAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---------- 238 (518)
T ss_pred HHHHHHHhhhHHhhhhHh-HHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----------
Confidence 999999999999999999 887743221 2222222 344455555555443211
Q ss_pred HHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863 339 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS 393 (425)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 393 (425)
....+........+|.+|...|+.+.|..-|+++........+.+.
T Consensus 239 ---------~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 239 ---------HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred ---------hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 1111122334456899999999999999999998665544444443
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=7.2e-07 Score=73.35 Aligned_cols=136 Identities=17% Similarity=0.031 Sum_probs=110.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
...+..++..|..|-..|-+.-|.--|.+++.+.|..+.+++.+|..+...|+|+.|.+.|...++++|.+..+..|.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAV 299 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~ 299 (425)
.+.--|+++-|.+.+.+-.+.+|++|.--.-+-. -...-++.+|...+.+-+...+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988853222111 1234567777665544144443
No 180
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.74 E-value=9.7e-06 Score=70.43 Aligned_cols=192 Identities=27% Similarity=0.296 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-H
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN-C 209 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~ 209 (425)
......+..+...+++..+...+.... +.....+...|..+...+++..++..+..++...+.........+. +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 344667888889999999998887764 6677888899999999999999999999999988877666666666 8
Q ss_pred HHHhcCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDA---TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~ 285 (425)
+...|+++.|...+.+++...| .........+..+...++++.|+..+.+++...+. ....+..++.++...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 9999999999999999988776 45667777777788999999999999999999998 6899999999999999999
Q ss_pred HHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCC
Q psy1863 286 QASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~ 328 (425)
.|...+.. ++...|... +..++.. ....+...+.+.+...|.
T Consensus 220 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEK-ALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHH-HHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999 999988732 3333322 578888888888888886
No 181
>KOG4648|consensus
Probab=98.73 E-value=3.9e-08 Score=85.98 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 249 (425)
-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|+++++|..|...+..++.++.....+|...|.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCHH
Q psy1863 250 YSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~ 269 (425)
..+|.+.++.++++.|++..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 66666666666666665443
No 182
>KOG4555|consensus
Probab=98.72 E-value=6.3e-07 Score=67.41 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=44.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHc
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC----IEALYNLGLAHKHL 247 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~ 247 (425)
-|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... ..++...|.+|..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555555555555555555555555555555555442221 22344444444444
Q ss_pred CCHHHHHHHHHHHHhhC
Q psy1863 248 NEYSDSLECFHKLQAIV 264 (425)
Q Consensus 248 g~~~~A~~~~~~al~~~ 264 (425)
|+-+.|...|+.+-++.
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 44444444444444443
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=3.3e-07 Score=78.79 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS---MPEVLYQIAS 276 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 276 (425)
.++.+.-++..|+|.+|...|..-++..|+. +.+++-||.+++.+|++++|...|..+.+-.|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888899999999999999999999999976 789999999999999999999999999999886 4688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 277 LYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+...+|+.++|...|++ +++..|+.+
T Consensus 224 ~~~~l~~~d~A~atl~q-v~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQ-VIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHH-HHHHCCCCH
Confidence 99999999999999999 999999987
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.70 E-value=2.7e-08 Score=70.86 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---C----cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDN---D----ATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.++..+|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444444444444444433 0 11133444444444444444444444444443
No 185
>KOG3081|consensus
Probab=98.68 E-value=8.3e-06 Score=69.42 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=131.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hc
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----RE 214 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 214 (425)
..-|.+++..|++++|.+..... .+.++...--.++.+..+++-|....++..+++.+. ++..||..+.. .+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE 187 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch
Confidence 44578999999999999998884 444555555678888899999999999998887543 34444444433 35
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD-VNEN 293 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~ 293 (425)
++.+|.-+|+..-...|.++......+.|+..+|+|++|...++.++..++++++++.++..+-...|...++.. ...+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 689999999999998888899999999999999999999999999999999999999999999999998766654 5555
Q ss_pred HHHhcCcchH
Q psy1863 294 LLLEAVRNDA 303 (425)
Q Consensus 294 ~a~~~~p~~~ 303 (425)
....+|+++
T Consensus 268 -Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 -LKLSHPEHP 276 (299)
T ss_pred -HHhcCCcch
Confidence 666788888
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.68 E-value=3.3e-05 Score=66.99 Aligned_cols=214 Identities=24% Similarity=0.263 Sum_probs=171.5
Q ss_pred cCCHHHHHHHHHhcc---cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EM--TSSAATNLSFIYFLQGEVEQAEKMAEEACT--ADTYNSAAFVNLGNCAMAREDYVKGK 220 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 220 (425)
.+.+..+...+.... +. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666666 22 367888999999999999999999999997 78888899999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863 221 ELYVHALDNDATCIEALYNLGL-AHKHLNEYSDSLECFHKLQAIVP---SMPEVLYQIASLYEITGDVEQASDVNENLLL 296 (425)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~ 296 (425)
..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+ ++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~ 194 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK-AL 194 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH-HH
Confidence 9999999988877556666666 89999999999999999988776 3556677777778899999999999999 99
Q ss_pred hcCcc-hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhc
Q psy1863 297 EAVRN-DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRM 368 (425)
Q Consensus 297 ~~~p~-~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 368 (425)
...+. .. +..++.. ++..|...+..++...|.. .......+..+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~ 249 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-------------------------AEALYNLALLLLEL 249 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-------------------------HHHHhhHHHHHHHc
Confidence 99888 34 5555554 5789999999999888871 12233344445566
Q ss_pred CCHHHHHHHHHHHHhhccC
Q psy1863 369 NDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 369 g~~~~A~~~~~~~~~~~~~ 387 (425)
|.++.+...+.+..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 6788888888888666554
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=1.2e-07 Score=87.45 Aligned_cols=67 Identities=27% Similarity=0.299 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
|..+.+++++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6677777777777777777777777777777777777643 777777777777777777777777775
No 188
>KOG3081|consensus
Probab=98.66 E-value=1.4e-05 Score=68.18 Aligned_cols=156 Identities=17% Similarity=0.104 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
.....-|.+|...|++++|++..... .+.++...-..++.+..+++-|.+..+++.+.+.+ .++..||..+..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHH
Confidence 34455577889999999999888763 35566666667888899999999999999988644 445556655543
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh------hHHH
Q psy1863 247 ----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE------MKHE 314 (425)
Q Consensus 247 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~------~~~~ 314 (425)
.+++.+|.-+|++.-...|..+......+.|+..+|++++|...++. ++..++++| +.++..+ +.+-
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e-aL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE-ALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 35789999999999888888999999999999999999999999999 999999999 6666555 4455
Q ss_pred HHHHHHHHHhhcCCch
Q psy1863 315 AEKCILTSAKLIAPSI 330 (425)
Q Consensus 315 A~~~~~~a~~~~~~~~ 330 (425)
-.++..+.....|...
T Consensus 261 ~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 261 TERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhcCCcch
Confidence 5667777766677654
No 189
>KOG2796|consensus
Probab=98.66 E-value=3e-06 Score=71.86 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----C--cCcHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN----D--ATCIEALY 238 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~~~~~~ 238 (425)
..+.+.+..++...|+|.-+...+.+.++.+ |..+.....+|.+.++-|+.+.|..+|+.+-+. + .....+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4566788888999999999999999999988 667888899999999999999999999966543 2 23356778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+.+.+|.-.+++-.|...|.+.+..+|.++.+.++.|.|...+|+...|++..+. +++..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~-~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEA-MVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHH-HhccCCccc
Confidence 8899999999999999999999999999999999999999999999999999999 999999765
No 190
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.64 E-value=7.2e-08 Score=68.58 Aligned_cols=67 Identities=30% Similarity=0.375 Sum_probs=54.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
|..+.++.++|.+|..+|++++|+.+|++++++. |....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456788899999999999999999999998662 223466889999999999999999999998875
No 191
>KOG4555|consensus
Probab=98.62 E-value=2.7e-06 Score=64.05 Aligned_cols=90 Identities=20% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHh
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS----AAFVNLGNCAMAR 213 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~ 213 (425)
.|..+...|+.+.|++.|.+++ |..+.+|++.+..+..+|+.++|+.-+++++++..+.. .++...|.+|..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4666666667777777776666 66667777777777777777777777777766653332 3456666667777
Q ss_pred cCHHHHHHHHHHHHhcC
Q psy1863 214 EDYVKGKELYVHALDND 230 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~ 230 (425)
|+-+.|...|+.+-++.
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77777777666666553
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.62 E-value=2.2e-07 Score=85.72 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=65.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA---LYNLGLAHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 264 (425)
.+|+++.+++++|.+++..|+|++|+..|+++++++|++..+ |+|+|.+|..+|++++|+.+++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999854 9999999999999999999999999973
No 193
>KOG1586|consensus
Probab=98.58 E-value=1.5e-05 Score=66.51 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA--- 201 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 201 (425)
+.+++..-|+.|-...++..|-..|-++- .+.+..+...+.+|. .+++++|+.++++++++..+-..
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444555555555555555554443 122334444555554 45889999999988888654432
Q ss_pred ---HHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q psy1863 202 ---AFVNLGNCAMAR-EDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE-- 269 (425)
Q Consensus 202 ---~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 269 (425)
.+..+|.+|..- .++++|+.+|+++-+..... -..+...+..-..+++|.+|+..|++.....-+++-
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 355788888654 88999999999987654322 234555666667889999999999988776555442
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 270 -----VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 270 -----~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
-++.-|.|+.-..+.-.+...+++ ..+++|...
T Consensus 192 ys~KdyflkAgLChl~~~D~v~a~~ALek-y~~~dP~F~ 229 (288)
T KOG1586|consen 192 YSAKDYFLKAGLCHLCKADEVNAQRALEK-YQELDPAFT 229 (288)
T ss_pred hHHHHHHHHHHHHhHhcccHHHHHHHHHH-HHhcCCccc
Confidence 345667788887888888888888 888888766
No 194
>KOG3617|consensus
Probab=98.58 E-value=4.1e-05 Score=74.82 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 355 QDLEINKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 355 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
..+.-.+|.+..++|.|..|-+-|.++
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 355667999999999999999888877
No 195
>KOG1586|consensus
Probab=98.56 E-value=2.8e-05 Score=64.90 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCcchH--------HHHHHHh---
Q psy1863 249 EYSDSLECFHKLQAIVPSMP------EVLYQIASLYEIT-GDVEQASDVNENLLLEAVRNDA--------LSQLHRE--- 310 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~--- 310 (425)
+.++|+.++++++++..+-. .-+..+|.+|..- .++++|+.+|++ +-+....+. +...+..
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~-Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ-AAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 45555555555554443222 1234566666544 677777777777 665543322 2222222
Q ss_pred --hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863 311 --MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 388 (425)
Q Consensus 311 --~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 388 (425)
++.+|+..|++.....-++.-.. |.. ..-.+..|.|++-..+.-.+...++++..+.|..
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLK------ys~------------KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLK------YSA------------KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHH------hHH------------HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 66666666666654432222111 111 1233456788888788877778888887777776
Q ss_pred ccchh
Q psy1863 389 ATNLS 393 (425)
Q Consensus 389 ~~~l~ 393 (425)
.+.-.
T Consensus 229 ~dsRE 233 (288)
T KOG1586|consen 229 TDSRE 233 (288)
T ss_pred cccHH
Confidence 65444
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.55 E-value=1.6e-06 Score=69.72 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLN----------EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG---- 282 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 282 (425)
+.|.+.++.....+|.+++.+++-|.++..+. -+++|+.-|++++.++|+..++++++|.+|...+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 33444444444444444444444444443321 2345556666666666666666666666665543
Q ss_pred -------CHHHHHHHHHHHHHhcCcchH
Q psy1863 283 -------DVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 283 -------~~~~A~~~~~~~a~~~~p~~~ 303 (425)
.+++|..+|++ +...+|++.
T Consensus 88 d~~~A~~~F~kA~~~Fqk-Av~~~P~ne 114 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQK-AVDEDPNNE 114 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH-HHHH-TT-H
T ss_pred ChHHHHHHHHHHHHHHHH-HHhcCCCcH
Confidence 25566677777 777777777
No 197
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.54 E-value=1.4e-06 Score=69.96 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---
Q psy1863 182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMARED----------YVKGKELYVHALDNDATCIEALYNLGLAHKHLN--- 248 (425)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--- 248 (425)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+...+++++|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788888888899999999999998888876643 567888888999999999999999999998665
Q ss_pred --------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 249 --------EYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 249 --------~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
.|++|..+|+++...+|++......|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 378899999999999998765544443
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.54 E-value=2.5e-05 Score=62.90 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACT-ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLG 241 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la 241 (425)
...-.+.||......|++.+|..+|++++. +..+++..+..+++..+..+++..|...+++..+.+|. .++....+|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 334566788888888888888888888875 34667777888888888888888888888888887764 466777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 242 LAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
.++...|++.+|...|+.++...| .+.+....+..+..+|+.++|..-+..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 888888888888888888888777 455666667777778877776655554
No 199
>KOG2053|consensus
Probab=98.54 E-value=2.9e-05 Score=76.54 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=96.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 257 (425)
..+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++..++..+-.+|..+|++++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45677888888888888888888888888888888888888887777766667777778888888888888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+++...+|+ ......+-.+|.+.++|.+-.+.--+ ..+..|.++
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~-LyK~~pk~~ 144 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ-LYKNFPKRA 144 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCccc
Confidence 888888887 77777777778777777665555444 445567777
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.53 E-value=3.2e-05 Score=66.16 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE---VLY 272 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 272 (425)
.+..+++-|...+..|+|++|++.|+.+...+|.. ..+...++.++++.+++++|+...++.++..|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45678888999999999999999999998888765 567888889999999999999999999998887654 566
Q ss_pred HHHHHHH
Q psy1863 273 QIASLYE 279 (425)
Q Consensus 273 ~la~~~~ 279 (425)
..|.++.
T Consensus 113 lkgLs~~ 119 (254)
T COG4105 113 LKGLSYF 119 (254)
T ss_pred HHHHHHh
Confidence 6666643
No 201
>KOG1070|consensus
Probab=98.46 E-value=3.4e-05 Score=79.39 Aligned_cols=189 Identities=17% Similarity=0.066 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG 207 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (425)
-.|+..-...+..++.++|.+..++++ ......|..+-++...-|.-+...+.|++|.+... ...++..|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLL 1537 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence 344555556778899999999999998 22334555555555556777788889999987653 345688889
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ 285 (425)
.+|...+++++|.++++..++...+...+|..+|..++++++-+.|...+.+|++--|. +.......|.+-++.|+.+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 99999999999999999999998888999999999999999999999999999999997 6677888899999999999
Q ss_pred HHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863 286 QASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI 326 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~ 326 (425)
.+...|+. .+..+|.-. |.-+... +.+.+...|++++.+.
T Consensus 1618 RGRtlfEg-ll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEG-LLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHH-HHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999 888888766 6666555 6677888888887764
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.41 E-value=0.00016 Score=58.42 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=111.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCCH
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~ 250 (425)
++......=|++....-..+.+...|.. .-.+.||+.....|++.+|...|++++.- ..+++..+..++...+..+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 4444455556777777777777777744 44678999999999999999999999974 567889999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 251 SDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..|...+++..+.+|. .++....+|..+...|.+.+|...|+. ++...|+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~-a~~~ypg~~ 194 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV-AISYYPGPQ 194 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH-HHHhCCCHH
Confidence 9999999999999984 678889999999999999999999999 999999877
No 203
>KOG2796|consensus
Probab=98.38 E-value=1.2e-05 Score=68.33 Aligned_cols=143 Identities=19% Similarity=0.260 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA----D--TYNSAAFVN 205 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~ 205 (425)
.+.+.++.++.-.|.|.-....+.+.+ +..+.....+|.+.++.||.+.|..+|+..-+. + ..+..+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344677888889999999999999998 677888999999999999999999999955433 2 344566788
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---PEVLYQIASLY 278 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 278 (425)
.+.+|.-.+++.+|...|.+++..+|.++.+.++.|.|..-.|+..+|++..+.++...|.. ....+++..+|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999953 33455555444
No 204
>KOG3617|consensus
Probab=98.38 E-value=0.00016 Score=70.87 Aligned_cols=235 Identities=17% Similarity=0.128 Sum_probs=151.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (425)
...|......|..++|..+|.+. .-+-.|-..|...|.+++|.+..+.--++ .--..+++.+.-+...++.+.
T Consensus 804 akvAvLAieLgMlEeA~~lYr~c-----kR~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQC-----KRYDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHH
Confidence 44566777888899999988887 33445667788888888888776542222 123568888888888899999
Q ss_pred HHHHHHHHH----------hcCcC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Q psy1863 219 GKELYVHAL----------DNDAT----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-------------- 264 (425)
Q Consensus 219 A~~~~~~al----------~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 264 (425)
|+++|+++- .-+|. ++..|.--|......|+.+.|+.+|..+-...
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH
Confidence 999988752 22332 24455666777888899999999888875432
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCcchH----HHHHHHh----hHHHHHHHHHHHH
Q psy1863 265 -------PSMPEVLYQIASLYEITGDVEQASDVNENLLLE------AVRNDA----LSQLHRE----MKHEAEKCILTSA 323 (425)
Q Consensus 265 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~------~~p~~~----~~~l~~~----~~~~A~~~~~~a~ 323 (425)
..+..+.+.+|..|...|++.+|+.+|.+ |-. +..+|. +.+++.. +.-.|..+|++.-
T Consensus 957 Aa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr-AqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 957 AARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR-AQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG 1035 (1416)
T ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc
Confidence 24566889999999999999999998877 543 333333 6666666 6666667776653
Q ss_pred hhcCCchhhHhhchHH--HHHHHhHH----------hhchh-hhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 324 KLIAPSIEDNFSNGYN--WCVQSIRN----------SAHSS-LAQDLEINKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 324 ~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
-........++..|.. .+..+... +.+++ ..+.+...-+..+....+|++|+..+-.+
T Consensus 1036 ~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1036 GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222222223322210 00011111 11111 13455556778888888888888877655
No 205
>KOG2471|consensus
Probab=98.38 E-value=2.5e-05 Score=71.95 Aligned_cols=111 Identities=11% Similarity=-0.002 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc----cc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD----EM--------TSSAATNLSFIYFLQGEVEQAEKMAEEACTA------- 195 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~----~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 195 (425)
+...+.++..++..|++.+|.+.+...- +. ....|+++|.+++..|.|.-+..+|.+|++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677889999999999999887654 11 3346789999999999999999999999961
Q ss_pred --C---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 196 --D---------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 196 --~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
. .....+.++.|..|...|+.-.|.++|.+++.....+|..|..++.|+.
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 1234678999999999999999999999999999999999999999885
No 206
>KOG4642|consensus
Probab=98.38 E-value=7.7e-07 Score=74.24 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=46.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
|+.++...+|+.|+.+|.+++.++|..+..|.+.+.|++++.+++.+...+.+++++.|+...+++.+|.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHH
Q psy1863 287 ASDVNEN 293 (425)
Q Consensus 287 A~~~~~~ 293 (425)
|+..+++
T Consensus 97 aI~~Lqr 103 (284)
T KOG4642|consen 97 AIKVLQR 103 (284)
T ss_pred HHHHHHH
Confidence 5555555
No 207
>KOG4642|consensus
Probab=98.36 E-value=1.2e-06 Score=73.11 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 250 (425)
.-|..++....|..|+.+|.+++.++|..+..+.+.+.|+++..+++.+..-.+++++++|+.....+.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34556666677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhh
Q psy1863 251 SDSLECFHKLQAI 263 (425)
Q Consensus 251 ~~A~~~~~~al~~ 263 (425)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888887554
No 208
>KOG1070|consensus
Probab=98.27 E-value=0.00016 Score=74.76 Aligned_cols=176 Identities=12% Similarity=0.098 Sum_probs=148.3
Q ss_pred HHHHhcCCcchhhHHHHHHH--HHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863 123 QSIRNSAHSSLAQDLEINKA--VTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY 198 (425)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a--~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 198 (425)
++++.-.+......+.+..| +....-|.-+.-.+.|+++. -+...++..|..+|...+.+++|.++++..++....
T Consensus 1483 rAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1483 RALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred HHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 34444444443433333333 33334466667777888887 455678889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
...+|..+|..++++.+-+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+-.+...|...+.|.-...
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 9999999999999999999999999999999887 78888899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC
Q psy1863 277 LYEITGDVEQASDVNENLLLEAV 299 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~ 299 (425)
.-...|+.+.+...|++ ++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeR-vi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFER-VIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHH-HHhcC
Confidence 99999999999999999 87664
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.21 E-value=4.5e-05 Score=68.58 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA-REDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
+|..+.....+.+..+.|..+|.+|.+..+.+..+|...|.+-+. .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 556666666666678888888888876666677778888887666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 247 LNEYSDSLECFHKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
.|+.+.|...|++++..-|... .+|......-...|+.+....+.++ +.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R-~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR-AEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhhh
Confidence 8888888888888887766443 4677777777777888888888888 777777654
No 210
>KOG1585|consensus
Probab=98.21 E-value=0.00037 Score=58.84 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TY 198 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 198 (425)
-+..++..-+..+...++|++|..++.++. -.-+.++-..|.+......+.++..+++++.... |+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 345566677788888899999999999987 1224556677777888889999999999998764 55
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPS 266 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 266 (425)
....-...+.-.....+.++|+.+|++++.+.... ...+...+.++.+..++++|-..+.+-... .|+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 55555566666677889999999999998774322 345667788889999999998887765433 233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
....+.....+|....++..|..+++. ..+.
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~-~~qi 219 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRD-CSQI 219 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcc-hhcC
Confidence 344566666777777899999999988 6654
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=4.7e-06 Score=51.59 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG 207 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (425)
++..+|..|...|++++|+..|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.17 E-value=5e-06 Score=51.45 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
++..+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444555555555555555555555555555555544444
No 213
>KOG2053|consensus
Probab=98.15 E-value=0.0018 Score=64.39 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=147.1
Q ss_pred hhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 111 EDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEK 187 (425)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~ 187 (425)
.++|..++..|...++..+....+. ...|.++.++|+.++|..+++..- +.+...+..+-.+|..+|++++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~---vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAK---VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHH---HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3577888888888888766655332 456889999999999997777665 6677788889999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH-HcCCHH---------HHHHHH
Q psy1863 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK-HLNEYS---------DSLECF 257 (425)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~---------~A~~~~ 257 (425)
+|++++..+|+ ......+-.+|.+-+.|.+-.+.--+..+..|.++........+.+ .....+ -|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999998 8888888888999888888777777777788887655444444443 333322 344556
Q ss_pred HHHHhhC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH-HHHhcCcchH-HHH-----HHHh-hHHHHHHHHHHHHhhcC
Q psy1863 258 HKLQAIV-PSMPEV-LYQIASLYEITGDVEQASDVNEN-LLLEAVRNDA-LSQ-----LHRE-MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 258 ~~al~~~-p~~~~~-~~~la~~~~~~g~~~~A~~~~~~-~a~~~~p~~~-~~~-----l~~~-~~~~A~~~~~~a~~~~~ 327 (425)
++.+... +-...+ ....-.++..+|++++|..++.. .+-...+.+. +.+ +..+ ++.+-.+...+++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666555 221111 12223455677889999988833 1223333333 211 1222 77888888888888887
Q ss_pred Cc
Q psy1863 328 PS 329 (425)
Q Consensus 328 ~~ 329 (425)
++
T Consensus 258 Dd 259 (932)
T KOG2053|consen 258 DD 259 (932)
T ss_pred cc
Confidence 76
No 214
>KOG0545|consensus
Probab=98.13 E-value=3.4e-05 Score=64.84 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTA--------DTYNS----------AAFVNLGNCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (425)
.++..-|+-++..|+|.+|...|..|+.. .|..+ ..+.|.+.|+...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45666777777777877777777776532 24332 3466777777777777777777777777
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
.+|.+..+++..|.+....-+..+|...|.++++++|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 77777777777777777777777777777777777775443
No 215
>KOG0376|consensus
Probab=98.13 E-value=4.1e-06 Score=77.27 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 250 (425)
.-+...+.-++|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34555666677777777777888887777777777777777777788888777788877777777777777777777778
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 251 SDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
.+|...|++.....|+.+.+...+-.|
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 888888877777777777776666655
No 216
>KOG2610|consensus
Probab=98.12 E-value=0.00084 Score=59.38 Aligned_cols=152 Identities=11% Similarity=-0.080 Sum_probs=85.2
Q ss_pred HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhc
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-DTYN---SAAFVNLGNCAMARE 214 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 214 (425)
+.+....|++.+|....++.+ |.+.-++..--.+++.+|+...-...+++.+-. +|+. ..+.-.++-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 334445555555555555555 555555555556666666666666666666554 4333 233444555556666
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS----MPEVLYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~ 290 (425)
-|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-..-.. ...-|...+.++..-+.++.|++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 6666666666666666666666666666666666666666665543222111 112244455556666666666666
Q ss_pred HHH
Q psy1863 291 NEN 293 (425)
Q Consensus 291 ~~~ 293 (425)
|..
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 655
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.10 E-value=0.00033 Score=65.30 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc----------------
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA---------------- 231 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------- 231 (425)
.-..+-.-..+..+.+.-++...+|++++|+.+.++..|+.- ...-..+|..+|+++++...
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 334555566778889999999999999999999999887752 22335677777777765410
Q ss_pred -------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-C
Q psy1863 232 -------T--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVEQASDVNENLLLEA-V 299 (425)
Q Consensus 232 -------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~-~ 299 (425)
. ...+...+|.|..++|+.++|++.++..++..|. +..++.+|..++..++.+.++...+.+ --+. .
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k-YdDi~l 326 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK-YDDISL 326 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH-hccccC
Confidence 0 0335578999999999999999999999998875 456899999999999999999999888 6543 2
Q ss_pred cchH-HH-HHHHh---------------------hHHHHHHHHHHHHhhcCCchhh
Q psy1863 300 RNDA-LS-QLHRE---------------------MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 300 p~~~-~~-~l~~~---------------------~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
|... +. .-+.+ ....|.+.+.++++.+|..+..
T Consensus 327 pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4444 11 11111 1234678899999999887653
No 218
>KOG0545|consensus
Probab=98.09 E-value=4.3e-05 Score=64.27 Aligned_cols=102 Identities=10% Similarity=0.029 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cch----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMT----------SSAATNLSFIYFLQGEVEQAEKMAEEAC 193 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al 193 (425)
..+.-..|+-++..|+|.+|...|..++ |.. ...+.++..|++..|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455678999999999999999999987 332 3456789999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH
Q psy1863 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236 (425)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (425)
..+|.+..+++..|.+....=+.++|...|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999976443
No 219
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.09 E-value=3.4e-06 Score=48.70 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=12.5
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHH
Q psy1863 224 VHALDNDATCIEALYNLGLAHKHLNEYSDS 253 (425)
Q Consensus 224 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A 253 (425)
+++++++|+++.+|+++|.+|...|++++|
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444444433
No 220
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00014 Score=65.34 Aligned_cols=131 Identities=10% Similarity=0.095 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (425)
|+.......+.+..+.|..+|.++. +....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 3455556666667999999999999 4567889999999666 67777799999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863 214 EDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (425)
|+.+.|..+|++++..-|... .+|......-...|+.+......+++.+..|...
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998876654 6888888888899999999999999999988743
No 221
>KOG0376|consensus
Probab=98.05 E-value=8.8e-06 Score=75.10 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (425)
-+-+...+.-++|+.|+..|.++++++|+++..+.+.+.++.+.+++..|+..+.++++.+|....+|+..|.+...++.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcchH--HHHHHHhhHHHHHHHHHHHHhh
Q psy1863 284 VEQASDVNENLLLEAVRNDA--LSQLHREMKHEAEKCILTSAKL 325 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~~~--~~~l~~~~~~~A~~~~~~a~~~ 325 (425)
+.+|...|+. ...+.|+++ ...+..++.--...-|+.++-.
T Consensus 88 ~~~A~~~l~~-~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~ 130 (476)
T KOG0376|consen 88 FKKALLDLEK-VKKLAPNDPDATRKIDECNKIVSEEKFEKAILT 130 (476)
T ss_pred HHHHHHHHHH-hhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 9999999999 999999999 4444444444444445555443
No 222
>KOG1585|consensus
Probab=98.03 E-value=0.0032 Score=53.31 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVN 205 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 205 (425)
..|...-....+.++..+|+++. |+.+..-...+--.....++++|+.+|++++.+-... .+.+..
T Consensus 76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 33444455556666666666665 4443333334444556778999999999988764322 244667
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHH
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV----PSMPEVLYQIA 275 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la 275 (425)
.++++.+..++++|-..+.+-... .|+....+.....+|....+|..|..+++..-++. |++..+..+|-
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 788899999999998887765433 34445556666677777889999999999876653 34566666766
Q ss_pred HHHHHcCCHHHHHHHHHH
Q psy1863 276 SLYEITGDVEQASDVNEN 293 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~ 293 (425)
..| ..|+.++....+..
T Consensus 236 ~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHh-ccCCHHHHHHHHcC
Confidence 654 45788877666655
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.01 E-value=5.9e-06 Score=47.70 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy1863 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGK 220 (425)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 220 (425)
+|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 224
>KOG2471|consensus
Probab=97.93 E-value=7e-05 Score=69.10 Aligned_cols=141 Identities=21% Similarity=0.227 Sum_probs=111.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEA-CTADTY--------NSAAFVNLG 207 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la 207 (425)
-....++...+...+..-.+.++ .+.+.+....+..++..|++.+|.+.+... +...|. .-..|+++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 33445566666666665555555 677888889999999999999999887653 222233 223478999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc---------Cc---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDN---------DA---------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~---------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
.++++.|.|.-+..+|.++++. .| ....+.+|.|..|...|+.-.|.+||.++......+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9999999999999999999962 11 22568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1863 270 VLYQIASLYEI 280 (425)
Q Consensus 270 ~~~~la~~~~~ 280 (425)
.|..++.|+..
T Consensus 371 lWLRlAEcCim 381 (696)
T KOG2471|consen 371 LWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 225
>KOG2610|consensus
Probab=97.91 E-value=0.00041 Score=61.28 Aligned_cols=121 Identities=10% Similarity=-0.007 Sum_probs=73.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCc---HHHHHHHHHHHHHcC
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATC---IEALYNLGLAHKHLN 248 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~g 248 (425)
+.+.+..|++.+|....++.++..|.+.-++..--..++-.|+.+.-...+++.+-. +|+. ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344455566666666666666666666666555555666666666666666666654 3333 333444555566666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
-|++|.+.-+++++++|.+.-+...++.++...|++.++.++..+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666666666666666666666666666666666666655
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.90 E-value=0.018 Score=52.36 Aligned_cols=244 Identities=13% Similarity=-0.021 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc--cchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD--EMTS-SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (425)
+.+.-+..-+-.|+++.|.+-|+.++ |..- -.+..|-.-....|+.+.|..+.+.+....|.-+.++...-......
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 44556778888899999999999887 3221 12222333345689999999999999999999988888877788889
Q ss_pred cCHHHHHHHHHHHHhc---CcCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863 214 EDYVKGKELYVHALDN---DATC-----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 214 g~~~~A~~~~~~al~~---~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (425)
|+|+.|+++....... .++- ...+...+.... .-+...|...-.+++++.|+...+-..-+..+...|+..
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh
Confidence 9999999998776653 2221 112222222222 345778888889999999999988888899999999999
Q ss_pred HHHHHHHHHHHhcCcchH-HHHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH------Hhhchhh-
Q psy1863 286 QASDVNENLLLEAVRNDA-LSQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR------NSAHSSL- 353 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~-~~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~- 353 (425)
++-..++. +-+..|.-. +..+-.. ....-.+-..+...+.|++.+..+...-..+.-+.. ..+....
T Consensus 281 Kg~~ilE~-aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 281 KGSKILET-AWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred hhhhHHHH-HHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99999999 988888755 3333333 111112223334445566655544432111111110 0111111
Q ss_pred -hcHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q psy1863 354 -AQDLEINKAVTFLRM-NDVSQAVDVLKSCD 382 (425)
Q Consensus 354 -~~~~~~~la~~~~~~-g~~~~A~~~~~~~~ 382 (425)
...++..++.+-... |+-.++..++-++.
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 123445556655544 77777777776663
No 227
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.88 E-value=2.9e-05 Score=44.92 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
+|+++|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 228
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.88 E-value=2.7e-05 Score=45.11 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTY 198 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 198 (425)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555554443
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.0012 Score=63.95 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC----IEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
+.+.|.+.+.......|+..-..+..|.++...|+.++|+..|++++...+.- .-.++.+|.++..+++|++|..+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44555555555555556555555555555555666666666665555322211 22344555555555566666555
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCH
Q psy1863 257 FHKLQAIVPSM-PEVLYQIASLYEITGDV 284 (425)
Q Consensus 257 ~~~al~~~p~~-~~~~~~la~~~~~~g~~ 284 (425)
|.+..+.+.-. ....+..|.|+...|+.
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 55555543321 12233445555555555
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.85 E-value=0.013 Score=54.06 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHH-hcCcCcHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTA----DTYNSAAFVNLGNCAMA---REDYVKGKELYVHAL-DNDATCIE 235 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~~~~~~ 235 (425)
..+++..++=.+|....+|+.-+++.+..-.+ -+..+.+...+|.++.+ .|+.++|+..+..++ ...+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34566677778899999999998888877666 45667778888888888 899999999999854 45667788
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------
Q psy1863 236 ALYNLGLAHKHL---------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA-------- 298 (425)
Q Consensus 236 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~-------- 298 (425)
++..+|.+|... ...++|+..|.++.+.+| +...-.|++.++...|...+...-.+++.+.+
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 999999888532 357899999999999986 34444566666666665433332233312111
Q ss_pred --CcchH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863 299 --VRNDA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 299 --~p~~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~ 331 (425)
.+... ...+..+ ++++|.+.++++++..|+...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 11111 2222222 999999999999988776543
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=4.5e-05 Score=44.07 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTY 198 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 198 (425)
.+++.+|.+++..|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 232
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.84 E-value=5.3e-05 Score=43.78 Aligned_cols=31 Identities=35% Similarity=0.598 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444444444444444444444444444443
No 233
>KOG0551|consensus
Probab=97.83 E-value=0.00014 Score=63.98 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
+.-+-.-|+-|+...+|..|+..|.++++..-.+ ...|.|.+.+....|+|..|+.-+.+++..+|++..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3445566888888888889999998888775333 345788888888889999999999999999999988988889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 242 LAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
.|++.+.++.+|..+++..+.++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999998888888888876653
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.0026 Score=58.54 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=124.5
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hcCCCCH
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFL---QGEVEQAEKMAEEAC-TADTYNS 200 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~ 200 (425)
.+..++.+++-.+|....+|+.=+.+.+..- +..+.+.+.+|.++.+ .|+.++|+..+..++ ...+.++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3456667777788999999999888887765 4567788899999999 999999999999944 5567788
Q ss_pred HHHHHHHHHHHH---------hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh-------
Q psy1863 201 AAFVNLGNCAMA---------REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ-AI------- 263 (425)
Q Consensus 201 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~------- 263 (425)
+++..+|.+|-. ....++|+..|.++.+.+|+. ..-.|++.++...|.-.+......+.. .+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 999999998754 234789999999999999654 344566667776665433332222221 11
Q ss_pred C---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 264 V---P-SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 264 ~---p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
. + .+.-.+..++.+....|++++|++.+++ +..+.|...
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~-~~~l~~~~W 339 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK-AFKLKPPAW 339 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhcCCcch
Confidence 1 1 1223445667777889999999999999 998877655
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80 E-value=0.014 Score=53.02 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=161.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA-AFVNLGNCAMA 212 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~ 212 (425)
+..|.+..-.|+-..|.+.-.+.- ...+-++..-+..-...|+++.|.+-|+..+. +|..-. -+..|-.-...
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 445677777788888887766654 34456666777888888999999998887663 333221 12333333456
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC---HHHHHHHHHHHHH-cCCHH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP---SM---PEVLYQIASLYEI-TGDVE 285 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~---~~~~~~la~~~~~-~g~~~ 285 (425)
.|..+-|+.+-+.+....|.-+.++...-...+..|+++.|++..+......- +. ..+-..-+..... .-+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 78899999999999999998888888877788888999999998877655432 21 1222222332222 35677
Q ss_pred HHHHHHHHHHHhcCcchH----HHHHHHh---hHHHHHHHHHHHHhhcCCchhhHhhc----h---HHHHHHHhHHhhch
Q psy1863 286 QASDVNENLLLEAVRNDA----LSQLHRE---MKHEAEKCILTSAKLIAPSIEDNFSN----G---YNWCVQSIRNSAHS 351 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~----~~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~ 351 (425)
.|...-.+ +.++.|+.. ...-... +..++-..++.+.+..|...-..... | ...+....+-....
T Consensus 247 ~Ar~~A~~-a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 247 SARDDALE-ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHHH-HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 88888888 888888876 1111111 77888888888888887543211110 0 11222222234555
Q ss_pred hhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 352 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 352 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
+.+.+..+..+..-+..|+|..|..--+.+....|
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 55667777888888899999999887777644443
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0022 Score=56.14 Aligned_cols=156 Identities=16% Similarity=0.069 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF-VNLGNCAM 211 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 211 (425)
+.-+..+......|++.+|...|..++ +.+..+...++.+|...|+.+.|...+...-.........- ......+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 334555667777777777777777777 66777777778888888877777766655322221111110 01111222
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
+.....+. ..+++.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+. .+..+.-.+-.++...|.-+.+..
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 22222221 234555666777777777788888888888888777777776654 244556666666666664433333
Q ss_pred HHH
Q psy1863 290 VNE 292 (425)
Q Consensus 290 ~~~ 292 (425)
.++
T Consensus 294 ~~R 296 (304)
T COG3118 294 AYR 296 (304)
T ss_pred HHH
Confidence 333
No 237
>KOG0551|consensus
Probab=97.73 E-value=0.00049 Score=60.70 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT----CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
-+-.-|+-|++.++|..|+..|.++|+..-. ++..|.|.+.+....|+|..|+..+.+++..+|.+..+++.=+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3555789999999999999999999987433 366789999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 278 YEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 278 ~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+..+..+..|..+.+. .+.++.+..
T Consensus 163 ~~eLe~~~~a~nw~ee-~~~~d~e~K 187 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE-GLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHHhh-hhhhhHHHH
Confidence 9999999999999888 776654433
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.71 E-value=0.0018 Score=52.06 Aligned_cols=111 Identities=20% Similarity=0.175 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV-KGKELYVHALDNDATCIEALYNLGLAHKHLNEYS 251 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 251 (425)
|......|+.+.++..+++++.+.....-.-... ..|- .....++.. ...+...++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 4445566777777777777776653221100000 1111 111122221 2446677888888999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
+|+..+.+++..+|.+..++..+..+|...|+...|+..|++ ...
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~-~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER-YRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999988 543
No 239
>KOG1550|consensus
Probab=97.70 E-value=0.018 Score=57.21 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhc-----
Q psy1863 151 VSQAVDVLKSCD-EMTSSAATNLSFIYFLQ-----GEVEQAEKMAEEACTA-----DTYNSAAFVNLGNCAMARE----- 214 (425)
Q Consensus 151 ~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g----- 214 (425)
...|..+++.+. ..+..+...+|.+|..- .|.+.|+.+++.+.+. .-..+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 567888888877 77888889999998764 6899999999999771 1225567888999998853
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT----GDVEQA 287 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A 287 (425)
++..|+.+|.++-... ++.+.+.+|.++..-. ++..|..+|..|... .+..+.+.++.||..- -+...|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 7788999999998874 5778889999988765 678999999998765 4788999999998753 478999
Q ss_pred HHHHHHHHHhcCc
Q psy1863 288 SDVNENLLLEAVR 300 (425)
Q Consensus 288 ~~~~~~~a~~~~p 300 (425)
..++.+ +.+..+
T Consensus 384 ~~~~k~-aA~~g~ 395 (552)
T KOG1550|consen 384 FAYYKK-AAEKGN 395 (552)
T ss_pred HHHHHH-HHHccC
Confidence 999999 888773
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.67 E-value=0.0022 Score=51.61 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc--------cchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD--------EMTSS-AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
...|......|+.+.++..+.+++ +..+. .|. ......++.. ...+...++..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~------------~~~r~~l~~~------~~~~~~~l~~~ 71 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV------------EPERERLREL------YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH------------HHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH------------HHHHHHHHHH------HHHHHHHHHHH
Confidence 344666778889999999999987 22111 111 1111222221 22456667777
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|++..+
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888877644
No 241
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.0076 Score=49.45 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 184 QAEKMAEEACTADTYNSA---AFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 184 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 257 (425)
+.....++....+|.+.. +...++..+...|++++|+..++.++....+. .-+-.++|.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555555556655543 35667888888899999999888888653332 345678888888999999888887
Q ss_pred HHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 258 HKLQAIVPS-MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 258 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..... ++ .+......|.++...|+.++|+..|.+ +++.+++.+
T Consensus 150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~k-Al~~~~s~~ 193 (207)
T COG2976 150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEK-ALESDASPA 193 (207)
T ss_pred hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHH-HHHccCChH
Confidence 64321 11 223455678888999999999999999 888876555
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.60 E-value=0.0085 Score=56.27 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=113.3
Q ss_pred HHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------------
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT---------------------- 197 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------------- 197 (425)
...-+..+...-++.-++++ |+-+.++..|+.-. ..-..+|..+|+++++...
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 34456677888888888888 67777777776532 2235667777777665420
Q ss_pred -C--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHH
Q psy1863 198 -Y--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAI-VPSMPEVL 271 (425)
Q Consensus 198 -~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~ 271 (425)
. ...+...+|.|..++|+.++|++.++..++.+|. +..+..++..++..++.|.++...+.+.-.+ .|......
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 0 1234678999999999999999999999988775 4678999999999999999999999886433 35556655
Q ss_pred HHHHHHHHH-cCC---------------HHHHHHHHHHHHHhcCcchH
Q psy1863 272 YQIASLYEI-TGD---------------VEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 272 ~~la~~~~~-~g~---------------~~~A~~~~~~~a~~~~p~~~ 303 (425)
+.-+.+-.+ .++ -..|++.+.+ |++.+|.-+
T Consensus 334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~R-AvefNPHVp 380 (539)
T PF04184_consen 334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHR-AVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHH-HHHhCCCCc
Confidence 655554322 222 1346788999 999999877
No 243
>KOG3616|consensus
Probab=97.58 E-value=0.051 Score=53.41 Aligned_cols=139 Identities=15% Similarity=0.115 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcC
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-SAAFVNLGNCAMARED 215 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~ 215 (425)
.+-..+..|...|+|+.|.++|.++- ....-...|-+.|++.+|.++-++.. .|.. ...|...+.-.-..|+
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 34466778889999999999998873 22233456778899999988877764 3333 3446666667777788
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
|.+|..+|-..- .|+.+ ...|-+.|.+++-+....+ .+|+ -.+.+..+|.-+...|+...|...|-+
T Consensus 840 f~eaeqlyiti~--~p~~a------iqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 840 FAEAEQLYITIG--EPDKA------IQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhhhheeEEcc--CchHH------HHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 877766553211 12211 1223344444444444332 2232 234555666666666666666665555
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0047 Score=54.10 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=103.6
Q ss_pred HHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-HH
Q psy1863 157 VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-IE 235 (425)
Q Consensus 157 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 235 (425)
.+.+.++.....-..-+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-...... ..
T Consensus 125 ~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 125 FLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred HHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 33444455555566777788899999999999999999999999999999999999999999988877643322221 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p 300 (425)
.....-..+.+.....+ ...+++.+..+|++..+-+.++..+...|+.+.|.+.+-. .++.+.
T Consensus 205 ~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~-~l~~d~ 267 (304)
T COG3118 205 GLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA-LLRRDR 267 (304)
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcc
Confidence 11111122222222222 2345566778999999999999999999999999999888 766643
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.56 E-value=0.056 Score=48.63 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
.+.|...++.++|+.|+++|+-+
T Consensus 250 W~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 250 WNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH
Confidence 34688888999999999999865
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.52 E-value=0.081 Score=49.41 Aligned_cols=165 Identities=13% Similarity=0.012 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EM------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AA 202 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 202 (425)
.....++..+....+.|.++.|...+.++. .. .+.+....+.+....|+..+|+..++..+....... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345566777888888888888887777776 11 567777778888888888888888777776211110 00
Q ss_pred HHHHHHHHHH--hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 203 FVNLGNCAMA--REDYVKGKELYVHALDNDATCIEALYNLGLAHKHL------NEYSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 203 ~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
...+...... ........... .....+.++..+|...... +..++++..|.++++..|....+|+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0000000000 00000000000 0001144556666666666 777777777777777777777777777
Q ss_pred HHHHHHcC-----------------CHHHHHHHHHHHHHhcCcchH
Q psy1863 275 ASLYEITG-----------------DVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 275 a~~~~~~g-----------------~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|..+...- -...|+..|-+ ++...+...
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~-al~~~~~~~ 343 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLK-ALSLGSKYV 343 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHH-HHhhCCCch
Confidence 76654431 11347788888 888877744
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.48 E-value=0.0017 Score=62.80 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=93.3
Q ss_pred cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGK 220 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 220 (425)
..+.+.|.+++.... |+.+-..+..|.++...|+.++|+..|++++.....- .-.++.+|.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 456778888888877 9999999999999999999999999999988543222 345889999999999999999
Q ss_pred HHHHHHHhcCcC-cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q psy1863 221 ELYVHALDNDAT-CIEALYNLGLAHKHLNEY-------SDSLECFHKLQA 262 (425)
Q Consensus 221 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~ 262 (425)
.+|.+..+.+.- .....+..|.|+...|+. ++|.+.|.++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999987554 345567788999999998 666666665543
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.015 Score=47.78 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
..++..+...|++++|+..++.++....+. .-+-.+++.+...+|.+++|+..+.....-. -.+......|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH
Confidence 345555566666666666666665433221 1234566666666666666666555432110 012233455666666
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q psy1863 247 LNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p 265 (425)
.|+-++|+..|++++...+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALESDA 190 (207)
T ss_pred cCchHHHHHHHHHHHHccC
Confidence 6666666666666666653
No 249
>KOG1308|consensus
Probab=97.46 E-value=0.00012 Score=64.77 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=77.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 252 (425)
+.-.+..|.+++|++.|..++.++|.....+...+.++..+++...|+..|..++.++|+....|-..|.+...+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34445678888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCC
Q psy1863 253 SLECFHKLQAIVP 265 (425)
Q Consensus 253 A~~~~~~al~~~p 265 (425)
|...+..+.+++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 8888888887763
No 250
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.40 E-value=0.029 Score=51.00 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=100.4
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q psy1863 139 INKAVTFLRM----NDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYN-SAAFVNLGN 208 (425)
Q Consensus 139 ~~~a~~~~~~----g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~ 208 (425)
..++..+... .+..+|..+|..+. ...+.+.+.||.+|.. ..++.+|..+|+++.+..... ..+...+|.
T Consensus 77 ~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~ 156 (292)
T COG0790 77 ALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGL 156 (292)
T ss_pred HHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 4455555443 36788888888776 7777888889988887 448889999999988775433 344777777
Q ss_pred HHHHhc-------CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 209 CAMARE-------DYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 209 ~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
.|..-+ +...|...|.++-... ++.+..++|.+|.. ..++.+|..+|.++-+... ..+.+.++ +
T Consensus 157 ~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 157 AYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 776642 2336888888887765 67788888877755 3478899999988887765 77788888 6
Q ss_pred HHHcC
Q psy1863 278 YEITG 282 (425)
Q Consensus 278 ~~~~g 282 (425)
+...|
T Consensus 232 ~~~~g 236 (292)
T COG0790 232 MYLNG 236 (292)
T ss_pred HHhcC
Confidence 66555
No 251
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.35 E-value=0.00039 Score=40.07 Aligned_cols=30 Identities=33% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADT 197 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 197 (425)
+|+.+|.+|...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
No 252
>KOG1914|consensus
Probab=97.32 E-value=0.16 Score=48.35 Aligned_cols=302 Identities=11% Similarity=0.036 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhc-ccchhHH
Q psy1863 8 FERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAV-RNDALSQ 86 (425)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~d~l~~ 86 (425)
+...|+.|+.++..=.+.-....|..|+..+++-..+-+-|.+.. + ..+.... ..-..+.....|+=.+ ..+.|+.
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~-~-~vp~~~T-~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNA-P-AVPPKGT-KDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccC-C-CCCCCCC-hHHHHHHHHHHHHHHHHhcCCccc
Confidence 345788999999999999999999999999888665554333210 0 0111111 0001111100000000 0112221
Q ss_pred ----HHHHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 87 ----LHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
....+..-+-...+.. -+..+.-|..+..++.+ .++++..+|..-.....-+++..+|++++
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~----l~~~peiWy~~s~yl~~----------~s~l~~~~~d~~~a~~~t~e~~~~yEr~I 320 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY----LGYHPEIWYDYSMYLIE----------ISDLLTEKGDVPDAKSLTDEAASIYERAI 320 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHH----------hhHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 1111111111111110 01111222223322222 12233333333333334678888888887
Q ss_pred ----cchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH
Q psy1863 163 ----EMTSSAATNLSFIYFLQG---EVEQAEKMAEEACTADTYNS-AAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234 (425)
Q Consensus 163 ----~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (425)
..+...++.++..-...- .++.....+.+++.....++ -++..+-+.-.+..-...|...|.++-+..-...
T Consensus 321 ~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 321 EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 334444555554433322 36677778888887654333 3456666666667778889999999887643332
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CcchH---HHHHH
Q psy1863 235 EALYNLGL-AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA--VRNDA---LSQLH 308 (425)
Q Consensus 235 ~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~--~p~~~---~~~l~ 308 (425)
.++..-|. -|...++..-|...|+-.++..++.+.........+..+++-..|...|++ ++.. .|+-. |..+-
T Consensus 401 hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr-~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 401 HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFER-VLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHH-HHhccCChhhhHHHHHHHH
Confidence 33333332 245688999999999999999999999888888999999999999999999 8876 33332 44443
Q ss_pred Hh-----hHHHHHHHHHHHHhhcC
Q psy1863 309 RE-----MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 309 ~~-----~~~~A~~~~~~a~~~~~ 327 (425)
.. +.....+.-++-....|
T Consensus 480 ~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcccHHHHHHHHHHHHHhcc
Confidence 33 55555555555555555
No 253
>KOG1308|consensus
Probab=97.32 E-value=9.4e-05 Score=65.44 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=86.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (425)
-.+..|.++.|++.|..++.++|.....+...+.++.++++...|+..|..++.++|+...-|-..|.....+|++++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchH
Q psy1863 289 DVNENLLLEAVRNDA 303 (425)
Q Consensus 289 ~~~~~~a~~~~p~~~ 303 (425)
..+.. +.+++-+..
T Consensus 203 ~dl~~-a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLAL-ACKLDYDEA 216 (377)
T ss_pred HHHHH-HHhccccHH
Confidence 99999 988764433
No 254
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.30 E-value=0.00053 Score=39.46 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444444444444444444433
No 255
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.14 E-value=0.052 Score=50.60 Aligned_cols=154 Identities=17% Similarity=0.095 Sum_probs=107.9
Q ss_pred cCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------C------------CCCH-
Q psy1863 148 MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------------D------------TYNS- 200 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~~- 200 (425)
.+|.+.=+.++++. |-+.+++..++.++..+|+.+.|.++.++|+-. + +.|-
T Consensus 23 ~~Dp~~l~~ll~~~-PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ 101 (360)
T PF04910_consen 23 SHDPNALINLLQKN-PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQ 101 (360)
T ss_pred ccCHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchH
Confidence 34555444454443 777777777777777777777777777776522 1 2222
Q ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-cHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHH
Q psy1863 201 --AAFVNLGNCAMAREDYVKGKELYVHALDNDAT-CIEAL-YNLGLAHKHLNEYSDSLECFHKLQAIVP-----SMPEVL 271 (425)
Q Consensus 201 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 271 (425)
.+.+.......+.|-+.-|.++++-.+.++|. ++... ..+-....+.++++--+..++....... .-|...
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a 181 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA 181 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH
Confidence 34566677788899999999999999999998 66544 4444455677888877887776655211 234677
Q ss_pred HHHHHHHHHcCCH---------------HHHHHHHHHHHHhcCcchH
Q psy1863 272 YQIASLYEITGDV---------------EQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 272 ~~la~~~~~~g~~---------------~~A~~~~~~~a~~~~p~~~ 303 (425)
+.++.++...++. +.|...+.+ |+...|.-.
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~-Ai~~fP~vl 227 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQK-AILRFPWVL 227 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHH-HHHHhHHHH
Confidence 8888888888888 899999999 998888755
No 256
>KOG1258|consensus
Probab=97.10 E-value=0.14 Score=49.43 Aligned_cols=190 Identities=8% Similarity=0.048 Sum_probs=143.4
Q ss_pred HHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863 144 TFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA 212 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (425)
++.......+.+-.++..+ +.....|......-...|+++...-.|++++--.......|...+.....
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES 343 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Confidence 3344445555566666665 33445666677777889999999999999998888888999999999989
Q ss_pred hcCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--
Q psy1863 213 REDYVKGKELYVHALDN-DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD-- 289 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-- 289 (425)
.|+.+-|-..+..+.+. .|..+.+...-+..--..|++..|...+++..+-.|+...+-..........|+.+.+..
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~ 423 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKN 423 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHH
Confidence 99999999888888877 567788888888888889999999999999998889888888888888888899988883
Q ss_pred -HHHHHHHhcCcchH-----HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHh
Q psy1863 290 -VNENLLLEAVRNDA-----LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNF 334 (425)
Q Consensus 290 -~~~~~a~~~~p~~~-----~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~ 334 (425)
.+.. ...-..+.. +.+.++. +.+.|...+.++.+..|.+...+.
T Consensus 424 ~l~s~-~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 424 ELYSS-IYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred HHHHH-hcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 3333 222111111 3333333 888999999999999888765443
No 257
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.07 E-value=0.045 Score=50.36 Aligned_cols=131 Identities=9% Similarity=-0.004 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--------hHHHHHHHHH
Q psy1863 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--------MKHEAEKCIL 320 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--------~~~~A~~~~~ 320 (425)
+.-+..+++|++.+|++...+..+-.+..+..+.++...-+++ ++..+|+++ |..+-.. .+......|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~-~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE-LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555 555555554 2111111 3444444555
Q ss_pred HHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863 321 TSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA 389 (425)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 389 (425)
++++............ .............+...+.......|..+.|+..++......-..|
T Consensus 127 ~~l~~L~~~~~~~~~~-------~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTS-------HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHhhcccccc-------ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 4444332211111000 0000011111234455677777888888999988888865444333
No 258
>KOG4507|consensus
Probab=96.99 E-value=0.0029 Score=60.14 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
...|+...|+.++..++...|.. .....++|.+..+.|-..+|...+.+++.+....+-.++.+|..+..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34555555555555555555532 22344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCcchH
Q psy1863 290 VNENLLLEAVRNDA 303 (425)
Q Consensus 290 ~~~~~a~~~~p~~~ 303 (425)
.|+. |++.+|+++
T Consensus 698 ~~~~-a~~~~~~~~ 710 (886)
T KOG4507|consen 698 AFRQ-ALKLTTKCP 710 (886)
T ss_pred HHHH-HHhcCCCCh
Confidence 5555 555555555
No 259
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.98 E-value=0.0016 Score=37.08 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=9.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDND 230 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~ 230 (425)
+|.++...|++++|+..|++++...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3333333333333333333333333
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.97 E-value=0.0015 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (425)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999874
No 261
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.95 E-value=0.29 Score=44.44 Aligned_cols=161 Identities=20% Similarity=0.144 Sum_probs=121.3
Q ss_pred HHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----h
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----R 213 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 213 (425)
......+++..|...+..+- ...+.+...++.+|.. ..+..+|..+|..+ ....++.+.+.+|..|.. .
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence 34445678888888888876 3455788888888876 35688899999944 456678889999999987 4
Q ss_pred cCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----c
Q psy1863 214 EDYVKGKELYVHALDNDATC-IEALYNLGLAHKHLN-------EYSDSLECFHKLQAIVPSMPEVLYQIASLYEI----T 281 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 281 (425)
.+..+|..+|+++....... ..+.+.+|.+|..-+ +...|...|.++-... ++.+.+.+|.+|.. .
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 59999999999999885333 344788888887642 2337888888887765 78899999988865 3
Q ss_pred CCHHHHHHHHHHHHHhcCcchHHHHHH
Q psy1863 282 GDVEQASDVNENLLLEAVRNDALSQLH 308 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~~~~~~l~ 308 (425)
.++++|..+|.+ +.+.........++
T Consensus 205 ~d~~~A~~wy~~-Aa~~g~~~a~~~~~ 230 (292)
T COG0790 205 RDLKKAFRWYKK-AAEQGDGAACYNLG 230 (292)
T ss_pred cCHHHHHHHHHH-HHHCCCHHHHHHHH
Confidence 489999999999 88877622244444
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.94 E-value=0.002 Score=37.61 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
+.++|.+|..+|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666443
No 263
>KOG0985|consensus
Probab=96.93 E-value=0.45 Score=48.93 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-------------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYN------------- 199 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~------------- 199 (425)
.++|-.+|...++.|...+|++.|-++ ++|..+...-.+....|.|++-+.++..+-+.. |.-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence 456677788888888888888777776 666777777777788888888887777665442 111
Q ss_pred ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Q psy1863 200 ------------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-- 265 (425)
Q Consensus 200 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 265 (425)
..-.-..|.-++..|.|+.|.-+|.. ..-|..++..+..+|+|+.|...-+++-....
T Consensus 1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 11122334444455555555444432 33466788888889999999888877643321
Q ss_pred -----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh----hHHHHH
Q psy1863 266 -----------------------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE----MKHEAE 316 (425)
Q Consensus 266 -----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~----~~~~A~ 316 (425)
-..+-+-.+...|...|-+++-+..++. ++.+...+. +..|+.+ .+++-.
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea-~LGLERAHMgmfTELaiLYskykp~km~ 1332 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA-GLGLERAHMGMFTELAILYSKYKPEKMM 1332 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1223344566677788888888888888 887766555 5556655 555555
Q ss_pred HHHHH
Q psy1863 317 KCILT 321 (425)
Q Consensus 317 ~~~~~ 321 (425)
+.++-
T Consensus 1333 EHl~L 1337 (1666)
T KOG0985|consen 1333 EHLKL 1337 (1666)
T ss_pred HHHHH
Confidence 54443
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.92 E-value=0.0017 Score=37.90 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
++.+||.+|...|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 265
>KOG0985|consensus
Probab=96.90 E-value=0.42 Score=49.16 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=57.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc-------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCD-------------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 195 (425)
.|.+....+-|++|..+|++.- -..+.+|..+|......|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 4666777777888888877753 344667777777777777777777777543
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
+++..+.....+..+.|.|++-+.++..+-+.
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45566666666677777777777777666554
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.87 E-value=0.64 Score=47.21 Aligned_cols=162 Identities=11% Similarity=-0.001 Sum_probs=94.0
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHH
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADT-----YNSAAFV 204 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~ 204 (425)
+...++...-+..+...|...+|+...-.+- |.. +......|.-.+..++..- ....++.-| .++....
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvl 419 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVL 419 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHH
Confidence 4456777777778888888888887666553 221 2222333444444444332 222222222 2334445
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHH
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDNDAT--C-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM-----PEV 270 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~ 270 (425)
..+.......++++|..+..++...-|. . ....-..|.+....|+++.|++..+.++..-|.+ ..+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 5556666677777777776666544222 1 2333445666667777777777777777766643 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
...+|.+..-.|++++|..+... +.++
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~-a~~~ 526 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQ-AEQM 526 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHH-HHHH
Confidence 56677777777777777777776 6665
No 267
>KOG0530|consensus
Probab=96.87 E-value=0.12 Score=44.62 Aligned_cols=159 Identities=11% Similarity=-0.025 Sum_probs=116.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH-HHH
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS-DSL 254 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~ 254 (425)
.....-..|+.....++.++|.+..+|...-.++..++ +..+-+.++...+..+|.+.++|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 33445567788888888888888888777766665543 5677788888888888888888888888888888777 778
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHH--------HHHh---hHHHHHHHHHH
Q psy1863 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQ--------LHRE---MKHEAEKCILT 321 (425)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~--------l~~~---~~~~A~~~~~~ 321 (425)
+..+.++..+..+-.+|...-.+....+.++.-+.+..+ .++.+--+. |.. .|.. ..+.-+.+..+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~-Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE-LLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH-HHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888 666553332 221 1111 44555667778
Q ss_pred HHhhcCCchhhHhhc
Q psy1863 322 SAKLIAPSIEDNFSN 336 (425)
Q Consensus 322 a~~~~~~~~~~~~~~ 336 (425)
.+...|.+..+|..+
T Consensus 213 ~I~~vP~NeSaWnYL 227 (318)
T KOG0530|consen 213 KILLVPNNESAWNYL 227 (318)
T ss_pred HHHhCCCCccHHHHH
Confidence 888888887766543
No 268
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.83 E-value=0.49 Score=47.99 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---c---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---E---------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-- 200 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 200 (425)
+.+.+..|+......++.+|..++.++. + ..+......|.+....|++++|+++.+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 4566778999999999999999988876 1 1234455668888999999999999999998877653
Q ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc----Cc--HHHHHHHHHHHHHcCC--HHHHHHHHHHHHh----hCC
Q psy1863 201 ---AAFVNLGNCAMAREDYVKGKELYVHALDNDA----TC--IEALYNLGLAHKHLNE--YSDSLECFHKLQA----IVP 265 (425)
Q Consensus 201 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~--~~~~~~la~~~~~~g~--~~~A~~~~~~al~----~~p 265 (425)
.+...+|.+..-.|++++|..+..++.+... .. ..+....+.++..+|+ +.+....|...-. ..|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4578889999999999999999999887732 22 3344566788888883 3333333333222 123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CcchH-----HHHHHHh-----hHHHHHHHHHHHHhhcCCc
Q psy1863 266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEA----VRNDA-----LSQLHRE-----MKHEAEKCILTSAKLIAPS 329 (425)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~----~p~~~-----~~~l~~~-----~~~~A~~~~~~a~~~~~~~ 329 (425)
-........+.++...-+++.+..-..+ .++. .|... +..|+.+ +.++|.....+........
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~-~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARL-GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhh-cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 3222222223332222224444444444 4433 22222 2255555 8888888888877765444
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.82 E-value=0.033 Score=44.55 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=32.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 249 (425)
...++.+++...+...--+.|..+..-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3344444444444444444444444444444444444444444444444444444444444444444444443
No 270
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.80 E-value=0.021 Score=42.42 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCcCcHHHHH
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSA---AFVNLGNCAMARED-----------YVKGKELYVHALDNDATCIEALY 238 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~ 238 (425)
+..++..|++-+|++..+..+...+++.. .+..-|.++..+.. .-.++++|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 34445555555555555555555544432 22222333322211 12245555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.+|.-+.....|+++..-.++++.+
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5555444444455555555555443
No 271
>KOG2300|consensus
Probab=96.79 E-value=0.48 Score=44.67 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=122.2
Q ss_pred HHcCCHHHHHHHHHhcc---------cch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------
Q psy1863 146 LRMNDVSQAVDVLKSCD---------EMT--------SSAATNLSFIYFLQGEVEQAEKMAEEACTAD---TY------- 198 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~---------~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~------- 198 (425)
+..|-+++|.++-++++ +.. ...+-.+..|-.-.|++.+|+.....+.+.. |.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 35567777877777776 111 1234466777788999999999888776653 43
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-C--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM-------- 267 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 267 (425)
.+.....+|.....-+.++.|...|..+.+.... + +.+..++|.+|.+.|+-+.--+..+ .+.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHH
Confidence 2345677788888889999999999999987443 2 3455789999999887655444444 344532
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863 268 --PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 268 --~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~~~~a~~~~~ 327 (425)
..+++..|...+.++++.+|...+.+ .++...... +.-|+.+ +..++.....-+++...
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e-~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRE-TLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH-HHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 23667778888899999999999999 888752222 2223333 66677776666666543
No 272
>KOG1839|consensus
Probab=96.78 E-value=0.015 Score=60.82 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHH------HHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C
Q psy1863 136 DLEINKAVTFLRMNDVSQAVD------VLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------T 197 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~------~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p 197 (425)
+.....|......|.+.+|.+ ++.... |..+..+..++.++...|++++|+..-.++.-+. |
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 334566777788888887777 444333 7888999999999999999999999988876543 5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----
Q psy1863 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP---- 265 (425)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 265 (425)
+....+.+++...+..+....|...+.++..+ +|.......+++.++...++++.|+.+.+.|+....
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 56677889998889999999999999888765 566677778999999999999999999999988643
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 266 ----SMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 266 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
.....+..++..+..++++..|....+. ...+
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~-t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKV-TYGI 1128 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh-HHHH
Confidence 2345677788888888888888777666 5543
No 273
>KOG2300|consensus
Probab=96.74 E-value=0.12 Score=48.61 Aligned_cols=125 Identities=13% Similarity=0.051 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---------
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-N--SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC--------- 233 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 233 (425)
+..++.+|......|.++.|...|..|.+.-.. + ..+..++|.+|.+.|+-+.--+..+. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 444455555555555555555555555544321 1 12234455555555543332222222 22221
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 234 -IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------MPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 234 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
..+++..|...+.++++.+|.....+.++.... ..-.+..+|.+....|+..++....+-
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 234445555555556666666555555554311 111334455555556666555555444
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.74 E-value=0.1 Score=48.76 Aligned_cols=161 Identities=9% Similarity=-0.047 Sum_probs=104.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-c--HH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT----YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-C--IE 235 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~~ 235 (425)
......|...+.+....|.++.|...+.++...++ ..+.+.+..+......|+..+|+..++..+..... . ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 45667888889999999999999999998887652 24677788888889999999999998888873211 1 11
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCcchH--HH
Q psy1863 236 --ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT------GDVEQASDVNENLLLEAVRNDA--LS 305 (425)
Q Consensus 236 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~a~~~~p~~~--~~ 305 (425)
.....+..+.............. ......++..+|...... +..+++...|.+ +.+.+|+.. +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLDPSWEKAWH 296 (352)
T ss_pred cHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhChhHHHHHH
Confidence 11111110000000000000000 001235677778777777 899999999999 999999877 66
Q ss_pred HHHHh-------h---------------HHHHHHHHHHHHhhcCCc
Q psy1863 306 QLHRE-------M---------------KHEAEKCILTSAKLIAPS 329 (425)
Q Consensus 306 ~l~~~-------~---------------~~~A~~~~~~a~~~~~~~ 329 (425)
.++.. + ...|+..|-+++...+..
T Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 66655 1 134778888888887773
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.72 E-value=0.041 Score=44.04 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
..+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45667777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHH
Q psy1863 281 TGDVE 285 (425)
Q Consensus 281 ~g~~~ 285 (425)
+|+..
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 98864
No 276
>KOG1550|consensus
Probab=96.71 E-value=0.1 Score=51.88 Aligned_cols=142 Identities=23% Similarity=0.179 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhc-----CcCcHHHHHHHHHHHHHcC--
Q psy1863 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR-----EDYVKGKELYVHALDN-----DATCIEALYNLGLAHKHLN-- 248 (425)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g-- 248 (425)
+...|..+++.+.+. .+..+...+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887654 4677788888887754 6899999999999771 1124667889999998843
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHH
Q psy1863 249 ---EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG---DVEQASDVNENLLLEAVRNDALSQLHRE---------MKH 313 (425)
Q Consensus 249 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~ 313 (425)
+++.|+.+|.++-.. .++.+.+.+|.++..-. +...|..+|.. |....-......++.+ +..
T Consensus 305 ~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~-Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSL-AAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 778899999998766 47889999999988765 67899999999 8876555554555554 899
Q ss_pred HHHHHHHHHHhhcC
Q psy1863 314 EAEKCILTSAKLIA 327 (425)
Q Consensus 314 ~A~~~~~~a~~~~~ 327 (425)
.|..++.++....+
T Consensus 382 ~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHccC
Confidence 99999999999884
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.70 E-value=0.14 Score=47.76 Aligned_cols=137 Identities=14% Similarity=0.038 Sum_probs=105.6
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------------------------cch---HHHHHHHHHHHHHc
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------------------------EMT---SSAATNLSFIYFLQ 179 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------------------------~~~---~~~~~~lg~~~~~~ 179 (425)
+...+.++.++.++..+|+...|.+++++++ +.+ -.+.+.......+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3356778999999999999999999999987 111 13455666778889
Q ss_pred CCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHcCCH--
Q psy1863 180 GEVEQAEKMAEEACTADTY-NSAA-FVNLGNCAMAREDYVKGKELYVHALDNDA-----TCIEALYNLGLAHKHLNEY-- 250 (425)
Q Consensus 180 g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~-- 250 (425)
|-+..|.++.+-.+.++|. ++-. .+.+=....+.++|+--+..++....... .-|...+..+.+++..++-
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEES 196 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccc
Confidence 9999999999999999998 6644 44444445677888888888887665311 1345778888999999888
Q ss_pred -------------HHHHHHHHHHHhhCCCCH
Q psy1863 251 -------------SDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 251 -------------~~A~~~~~~al~~~p~~~ 268 (425)
+.|...+.+|+...|...
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 899999999999887433
No 278
>KOG3824|consensus
Probab=96.66 E-value=0.0085 Score=52.57 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
..+.-....|+.++|...|+.|+.++|.++.++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444556688999999999999999999999999999988888889999999999999999988888776543
No 279
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.66 E-value=0.025 Score=40.96 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHH
Q psy1863 220 KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVE 285 (425)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 285 (425)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+.-.+-.++..+|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 445666666677777777777777777777777777777777666543 445555555555555543
No 280
>PRK10941 hypothetical protein; Provisional
Probab=96.63 E-value=0.03 Score=49.66 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
..++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4455556666666666666666666666666666666666666666666666666666666666665443
No 281
>KOG3824|consensus
Probab=96.62 E-value=0.0089 Score=52.45 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=63.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
.+.-....|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34445678999999999999999999999999999999998899999999999999999999988877654
No 282
>KOG4507|consensus
Probab=96.61 E-value=0.0043 Score=58.99 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=63.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
.+|+...|++++..|+...|.... ...+++++....|-...|-..+.+++.+..+.+-..+.+|..+..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 356666666666666666654432 3566666666666666666666666666655566666666666666666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q psy1863 257 FHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~ 278 (425)
|+.++..+|+++.+-..|-.+-
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHH
Confidence 6666666666666555544443
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.60 E-value=0.2 Score=46.04 Aligned_cols=136 Identities=15% Similarity=-0.007 Sum_probs=101.3
Q ss_pred cchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863 163 EMTSSAATNLSFIYFLQG------------EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (425)
|.+..+|..+....-..- -.+.-+..+++|++.+|++...+..+-.+..+..+.++..+-+++++..+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 566666665554433321 14567788999999999999998888888888889999999999999999
Q ss_pred cCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 231 ATCIEALYNLGLAHKH---LNEYSDSLECFHKLQAIVPS------------------MPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 231 ~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
|+++..|...-..... .-.++.....|.++++.... ...++..+.....+.|-.+.|+.
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 9998888765544433 34577888888877765220 12345667777888999999999
Q ss_pred HHHHHHHhcC
Q psy1863 290 VNENLLLEAV 299 (425)
Q Consensus 290 ~~~~~a~~~~ 299 (425)
.++- .++++
T Consensus 176 ~~Qa-~lE~n 184 (321)
T PF08424_consen 176 LWQA-LLEFN 184 (321)
T ss_pred HHHH-HHHHH
Confidence 9999 88874
No 284
>KOG2396|consensus
Probab=96.54 E-value=0.04 Score=51.77 Aligned_cols=84 Identities=6% Similarity=0.009 Sum_probs=55.3
Q ss_pred HHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcC
Q psy1863 155 VDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED-YVKGKELYVHALDND 230 (425)
Q Consensus 155 ~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 230 (425)
..+|+.+. +.++..|..........+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|...|.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 34455555 55566666655555555557777777777777777777777777666666555 677777777777777
Q ss_pred cCcHHHHH
Q psy1863 231 ATCIEALY 238 (425)
Q Consensus 231 ~~~~~~~~ 238 (425)
|+++..|.
T Consensus 171 pdsp~Lw~ 178 (568)
T KOG2396|consen 171 PDSPKLWK 178 (568)
T ss_pred CCChHHHH
Confidence 77776664
No 285
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.48 E-value=0.022 Score=36.35 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
++.+|..+.++|+|++|..+.+.+++..|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44455555555555555555555555555554443
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.4 Score=38.82 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH--HHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--NS--AAFVNLGNC 209 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~la~~ 209 (425)
+.-+.-+...+..++|+..|.... .-...+....|.+....|+-..|+..|.++-...|- -. .+...-+..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344666777788888888888776 333456677888888888888888888887655432 11 234445566
Q ss_pred HHHhcCHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHAL-DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
+...|.|++-....+..- ..+|-...+.-.||..-++.|++.+|...|..... +...|....+.+.+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 677888877665554432 12444456677788888888888888888887665 4455666666555543
No 287
>PRK10941 hypothetical protein; Provisional
Probab=96.37 E-value=0.029 Score=49.72 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
....++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++. .++..|+++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~-fl~~~P~dp 249 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY-FVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHhCCCch
Confidence 35678888999999999999999999999999999999999999999999999999999 999999988
No 288
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.35 E-value=0.022 Score=36.34 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF 203 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (425)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555555443
No 289
>KOG2396|consensus
Probab=96.30 E-value=0.14 Score=48.24 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy1863 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECFHKLQ 261 (425)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 261 (425)
..-...|+.|....+.++..|.+......+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456778888888888888888888777777778888888999999999999888888887777665 888888889999
Q ss_pred hhCCCCHHHHHHHH
Q psy1863 262 AIVPSMPEVLYQIA 275 (425)
Q Consensus 262 ~~~p~~~~~~~~la 275 (425)
+.+|+.+..|...-
T Consensus 168 R~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYF 181 (568)
T ss_pred hcCCCChHHHHHHH
Confidence 99988888775433
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.25 E-value=0.064 Score=38.81 Aligned_cols=67 Identities=18% Similarity=0.081 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCCHH
Q psy1863 185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNEYS 251 (425)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~ 251 (425)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567788888999999999999999999999999999999999888765 445555555555555543
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.23 E-value=0.69 Score=41.64 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHhc----Cc------C----cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhC
Q psy1863 203 FVNLGNCAMARE-DYVKGKELYVHALDN----DA------T----CIEALYNLGLAHKHLNEYS---DSLECFHKLQAIV 264 (425)
Q Consensus 203 ~~~la~~~~~~g-~~~~A~~~~~~al~~----~~------~----~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~ 264 (425)
+++.|......+ ++++|...++++.+. .+ + ...++..++.+|...+.++ +|....+.+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 444455555555 555555555554443 10 0 0234555666666555443 3333333444444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 265 PSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
|+.+..+...-.+....++.+.+.+.+.+
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 55555543333333335666666666666
No 292
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.19 E-value=0.064 Score=39.89 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=59.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLN-----------EYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
++..++..|++-+|+++.+..+..++++. ..+..-|.++..+. -.-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45677889999999999999998877665 44555666665432 12355666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
+.+|.-+.....|+++..-.++ ++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~-~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKR-GLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-Hhc
Confidence 6666555555555555555555 444
No 293
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.16 E-value=0.01 Score=32.92 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADT 197 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 197 (425)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444444444444444444444444443
No 294
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.15 E-value=0.0096 Score=33.00 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 238 YNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 238 ~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
..+|.++...|++++|+.++.++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444444444444444444433
No 295
>KOG3364|consensus
Probab=96.13 E-value=0.11 Score=40.09 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHHHcC---CHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy1863 132 SLAQDLEINKAVTFLRMN---DVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF 203 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (425)
....+..+++|+.+.... +..+.+.+++..+ ...-+..+.|+..+++.++|+.++.+.+..++..|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 444555677777777665 4455666666666 23345667777778888888888888888888777776654
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.99 E-value=0.44 Score=39.56 Aligned_cols=101 Identities=18% Similarity=0.069 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--CcH----
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDA--TCI---- 234 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~---- 234 (425)
.-..++..+|..|...|+.++|++.|.++.+..... ...+.++..+.+..|++.....+..++-..-. .+.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 334677788888888888888888888877665332 24567777777888888888888877765522 222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 264 (425)
.....-|..+...++|..|-..|-.+....
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 123345666667777777777776654433
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.93 E-value=0.14 Score=43.80 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHhcc----------cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD----------EMTSSAATNLSFIYFLQGEVEQAEKMAE 190 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 190 (425)
...+++|++.|.-++ ...+..+..+|.+|...|+.+....+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~ 142 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR 142 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 345666666666655 2234566677777777777444443333
No 298
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.89 E-value=0.19 Score=37.77 Aligned_cols=86 Identities=16% Similarity=0.058 Sum_probs=50.8
Q ss_pred HhcCHHHHHHHHHHHHhcCcC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCH----
Q psy1863 212 AREDYVKGKELYVHALDNDAT------------CIEALYNLGLAHKHLNEYSDSLECFHKLQAI-------VPSMP---- 268 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~---- 268 (425)
.-|-|++|..-+++++....+ +..++..|+.++..+|+|++++..-.+++.. +.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 345566666666666654211 1334556666777777777776666666543 22222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 269 EVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
.+.++.+..+..+|+.++|+..|+. +.++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~-agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRM-AGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHH-HHHH
Confidence 3456777788888888888888887 6554
No 299
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.88 Score=40.00 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-----DTYNS 200 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 200 (425)
.++...+...+++.|.|.+|+......+ +.-..++..-..+|....+..++...+..|-.. .|...
T Consensus 125 ~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 125 LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 3444556667777777777776665554 334455555666666666666655555444322 13322
Q ss_pred HHHH--HHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 201 AAFV--NLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 201 ~~~~--~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
.+.. .-|.....-.+|.-|-.+|-++++-
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 2222 2244444555666666666666654
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.85 E-value=0.16 Score=40.03 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 249 (425)
.++.+++...+...--+.|+.+..-..-|.+++..|+|++|+..++......+..+...-.++.|+.-+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444443
No 301
>KOG4814|consensus
Probab=95.84 E-value=0.95 Score=44.27 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
.+-|.-.++..+|..+++.|...+...|++ +....+++.||..+.+.+.|.+++++|-+.+|.++-....+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 344555667777777777777777665543 44556777777777777777777777777777777666666666
Q ss_pred HHHcCCHHHHHHHHHH
Q psy1863 278 YEITGDVEQASDVNEN 293 (425)
Q Consensus 278 ~~~~g~~~~A~~~~~~ 293 (425)
....|.-++|+.+...
T Consensus 438 ~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHhcchHHHHHHHHH
Confidence 6667777777777666
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.80 E-value=0.57 Score=35.30 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV 204 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (425)
..|.-.+..|-|++|..-++++. ..++-++..|+..+..+|+|++++...++++
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL----------- 82 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL----------- 82 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------
Confidence 33555566677777777777765 1234455666666667777766665554443
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDNDATCIE----ALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
.+|.+-=+++.+... +-++.|..+...|+.++|+..|+.+-+
T Consensus 83 ----------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 83 ----------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ----------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ----------------HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 223332233333332 234566666667777777777766543
No 303
>KOG1258|consensus
Probab=95.79 E-value=2.1 Score=41.70 Aligned_cols=162 Identities=10% Similarity=0.088 Sum_probs=129.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMAREDY 216 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 216 (425)
-...-...|+++...-.|++++ ......|...+.-....|+.+-|-..+..+.+.. |..+.+...-+..--..|++
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 3445567899999999999998 6778899999999999999999999998888876 77778888888888889999
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCC---CHHHHHHHHHH-HHHcCCHHHHHH
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE---CFHKLQAIVPS---MPEVLYQIASL-YEITGDVEQASD 289 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~-~~~~g~~~~A~~ 289 (425)
+.|...+++..+-.|+...+-........+.|+.+.+.. .+.....-..+ ....+...+.. +.-.++.+.|..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999889988888888888889999999884 33222211111 12334445544 344689999999
Q ss_pred HHHHHHHhcCcchH
Q psy1863 290 VNENLLLEAVRNDA 303 (425)
Q Consensus 290 ~~~~~a~~~~p~~~ 303 (425)
.+.+ +.+..|.+.
T Consensus 463 ~l~~-~~~~~~~~k 475 (577)
T KOG1258|consen 463 ILLE-ANDILPDCK 475 (577)
T ss_pred HHHH-hhhcCCccH
Confidence 9999 999999887
No 304
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.79 E-value=0.16 Score=43.48 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHhcC-----CC--CHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHhcC--c----CcHHHHH
Q psy1863 179 QGEVEQAEKMAEEACTAD-----TY--NSAAFVNLGNCAMAREDYVK-------GKELYVHALDND--A----TCIEALY 238 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~-----p~--~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~--~----~~~~~~~ 238 (425)
.-.+++|++.|.-|+-.. +. -+..+..+|.+|...|+-+. |...|++++... | +...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 345666777666665321 11 24567888888888888544 455555555432 1 1256777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
.+|.++++.|++++|..+|.+++....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 888888888888888888888876543
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.73 E-value=0.21 Score=39.38 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (425)
.+......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++......+..+.+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34455555566899999999999888899999999999999999999999999999999888888888888899999888
Q ss_pred CCHH
Q psy1863 282 GDVE 285 (425)
Q Consensus 282 g~~~ 285 (425)
||.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8864
No 306
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.72 E-value=1.8 Score=40.61 Aligned_cols=169 Identities=13% Similarity=0.094 Sum_probs=112.4
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------C
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA---------------D 196 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~ 196 (425)
..+.++++.-.......++-+.|.......++..|.....++.+|....+-+.-..+|+++... .
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~ 378 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV 378 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc
Confidence 3456667776666677888889998888888777778888888888887777766666665432 0
Q ss_pred CCCH----H-----------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Q psy1863 197 TYNS----A-----------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG-LAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 197 p~~~----~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a 260 (425)
.+++ + ++..+-+.-.+..-.+.|.+.|-++-+..-....++..-| .-|...|++.-|-..|+-.
T Consensus 379 D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelG 458 (660)
T COG5107 379 DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELG 458 (660)
T ss_pred cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHH
Confidence 1111 1 1222223333444566777777777655312222322222 2345678899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863 261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~ 301 (425)
+...|+.+......-..+...++-+.|...|++ ++..-..
T Consensus 459 l~~f~d~~~y~~kyl~fLi~inde~naraLFet-sv~r~~~ 498 (660)
T COG5107 459 LLKFPDSTLYKEKYLLFLIRINDEENARALFET-SVERLEK 498 (660)
T ss_pred HHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH-hHHHHHH
Confidence 999998887777777777888999999999998 7655433
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.62 E-value=0.31 Score=40.40 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH----
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNSAA---- 202 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~---- 202 (425)
...+..+|..|.+.|+++.|++.|.++. ....+.+..+..+.+..|++.....+..++-..- +.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4556789999999999999999999987 3456778888899999999999999999887654 233322
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDA 231 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (425)
...-|..++..++|.+|-..|-.+..-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 34457777889999999999988775543
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.61 E-value=0.19 Score=47.14 Aligned_cols=126 Identities=10% Similarity=-0.052 Sum_probs=80.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
+..|+.-.|-.-...++...|..|......+.++..+|+|+.|......+-..-.+...+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34566666766667777777777776666777777777777777666555444333344444455555667777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
-.-.+.-.-+++++..--+.....+|-++++..++++ .+.++|...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~-~~~~~~~~~ 425 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKR-VLLLNPETQ 425 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHH-HhccCChhc
Confidence 6666665555666655555555666777777777777 666665443
No 309
>KOG1310|consensus
Probab=95.55 E-value=0.055 Score=51.21 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=68.9
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL---NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
.+..+.+..|+..|.+++...|.....+.+.+.++++. |+.-.|+..+..+++++|....+++.|+.++..++++.+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 33444567778888888888888777777777777663 456677777777888888778888888888888888888
Q ss_pred HHHHHHHHHHhcCcchH
Q psy1863 287 ASDVNENLLLEAVRNDA 303 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~ 303 (425)
|+++... +....|.+.
T Consensus 464 al~~~~a-lq~~~Ptd~ 479 (758)
T KOG1310|consen 464 ALSCHWA-LQMSFPTDV 479 (758)
T ss_pred hhhhHHH-HhhcCchhh
Confidence 8887777 666677555
No 310
>KOG3364|consensus
Probab=95.49 E-value=0.57 Score=36.23 Aligned_cols=74 Identities=26% Similarity=0.317 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 199 NSAAFVNLGNCAMARE---DYVKGKELYVHALD-NDAT-CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
+....++++.++.... +..+.+.+++..++ -+|+ .-+..+.|+..+.+.|+|+.++.+.+..++..|++..+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455666666665543 34566777777775 3443 2455667777777777777777777777777776665543
No 311
>KOG0530|consensus
Probab=95.43 E-value=0.3 Score=42.25 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=127.6
Q ss_pred HHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHH
Q psy1863 146 LRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV-KGK 220 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 220 (425)
.+...-+.|..+-..++ |.+-.+|...-.+... ..+..+-++++.+.+..+|.|..+|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34455667777777777 7776777666555544 456788899999999999999999999988888899888 889
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHH
Q psy1863 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-TG-----DVEQASDVNENL 294 (425)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~ 294 (425)
+..+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~- 212 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD- 212 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999988777777654332222 12 23344567777
Q ss_pred HHhcCcchH--HHHHHHh
Q psy1863 295 LLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 295 a~~~~p~~~--~~~l~~~ 310 (425)
.+...|++. |..|.-+
T Consensus 213 ~I~~vP~NeSaWnYL~G~ 230 (318)
T KOG0530|consen 213 KILLVPNNESAWNYLKGL 230 (318)
T ss_pred HHHhCCCCccHHHHHHHH
Confidence 888889887 6665443
No 312
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.24 E-value=0.43 Score=44.18 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-----------cc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD-----------EM----------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS 200 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~-----------~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (425)
|..++++++|..|..-|..++ |. ...+-..|..||+..++.+-|+.+..+.+.++|.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 556667777766666666665 11 112345788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHA 226 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~a 226 (425)
.-+...|.|+..+.+|.+|-.-+.-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987655444
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.22 E-value=0.054 Score=32.44 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 235 EALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566666666666666666666666654
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.19 E-value=0.042 Score=32.94 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIK 50 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~ 50 (425)
+..+...|..+..+|++++|+..+++++.+.+.+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 356788899999999999999999999999876655
No 315
>KOG1310|consensus
Probab=95.12 E-value=0.11 Score=49.36 Aligned_cols=104 Identities=18% Similarity=0.086 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR---EDYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
|...+....-|.--+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-+..+++++|....+++.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 333444444454455556778889999999999999988888888888765 56667888888888999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
|+.++..++++.+|+++...+....|.
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 999999999999999988877777773
No 316
>KOG2422|consensus
Probab=95.12 E-value=3.3 Score=40.24 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------------
Q psy1863 179 QGEVEQAEKMAEEACTA------------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN----------------- 229 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 229 (425)
...|++|...|.-+... .|.+...+..++.++..+|+.+-|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577887777777654 3677788889999999999988877777776632
Q ss_pred ----CcCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----
Q psy1863 230 ----DATCIE---ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MPEVLYQIASLYE-ITGDVEQASDVNENLL----- 295 (425)
Q Consensus 230 ----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~a----- 295 (425)
.|.+-. +++..-..+.+.|-+..|.++++-.++++|. +|-+...+..+|. +..+|.=-+++++. .
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~-~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE-PENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH-HHhhcc
Confidence 222222 2233334455678999999999999999997 7766555555543 34455544444444 3
Q ss_pred HhcCcchH-HHHHHHh--------hHHHHHHHHHHHHhhcCCchh
Q psy1863 296 LEAVRNDA-LSQLHRE--------MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 296 ~~~~p~~~-~~~l~~~--------~~~~A~~~~~~a~~~~~~~~~ 331 (425)
+..-|+.+ -..++.. +.+.|...+.+|++..|....
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~ 454 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLS 454 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHH
Confidence 23345555 2233333 467788888888888885443
No 317
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.97 E-value=0.067 Score=47.23 Aligned_cols=78 Identities=9% Similarity=0.120 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN-LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
..|+++..|...+..-...|-|.+-...|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|++|..|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 345555555555555555555555555666666666665555543 233344455566666666666666665555443
No 318
>KOG1464|consensus
Probab=94.96 E-value=2.3 Score=37.17 Aligned_cols=112 Identities=11% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHcCCH
Q psy1863 118 YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------------EMTSSAATNLSFIYFLQGEV 182 (425)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~lg~~~~~~g~~ 182 (425)
|+-..+.++......+.-.....+|..++..|+|.+-.+++++.- ....+++..-...|-.+.+-
T Consensus 128 YeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnN 207 (440)
T KOG1464|consen 128 YETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNN 207 (440)
T ss_pred HHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhccc
Confidence 333445555555544444444567777777777777776666654 11223444445566666666
Q ss_pred HHHHHHHHHHHhcCCC--CHHHHH----HHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 183 EQAEKMAEEACTADTY--NSAAFV----NLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 183 ~~A~~~~~~al~~~p~--~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
.+-..+|++++.+..- +|.+.- .=|..+.+.|+|++|...|-.+.+.
T Consensus 208 KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 208 KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 6667777777665422 222211 1244566677777777777777765
No 319
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.96 E-value=0.047 Score=46.06 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=27.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
..|+.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3444444455555555555544444555555444455555555555555555443
No 320
>KOG4014|consensus
Probab=94.92 E-value=1.5 Score=35.93 Aligned_cols=179 Identities=16% Similarity=0.081 Sum_probs=109.5
Q ss_pred cchhhHHHHHHHHHH-HHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHH
Q psy1863 131 SSLAQDLEINKAVTF-LRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFL-----QGEVEQAEKMAEEACTADTYNSAA 202 (425)
Q Consensus 131 ~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~ 202 (425)
....++....+|..+ -.+.+|++|.++|+.-- ...+...+.+|..++. .+++..|++.+..+.. .+.+.+
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 333445555556544 34568888888887765 5566777777776654 4578888888888776 456777
Q ss_pred HHHHHHHHHHh-----cC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHH
Q psy1863 203 FVNLGNCAMAR-----ED--YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQ 273 (425)
Q Consensus 203 ~~~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 273 (425)
..++|.++... ++ ..+|..++.++..+. +..+.++|...|+.- .++ +....| ..+..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g--~~k-------~~t~ap~~g~p~~--- 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGG--KEK-------FKTNAPGEGKPLD--- 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhcc--chh-------hcccCCCCCCCcc---
Confidence 77777776542 23 678888888887664 456666666655432 222 122233 22222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh---hHHHHHHHHHHHHhhc
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA------LSQLHRE---MKHEAEKCILTSAKLI 326 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~---~~~~A~~~~~~a~~~~ 326 (425)
.+..+....+.+.|.++--+ +-++.--.. ++.+|.- +.++|..+-.++.++.
T Consensus 174 ~~~~~~~~kDMdka~qfa~k-ACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIK-ACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHH-HHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 22334445678888888888 777654333 2333332 7777887777776654
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.87 E-value=0.11 Score=48.67 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=97.7
Q ss_pred HHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy1863 145 FLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE 221 (425)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 221 (425)
....|+.-.|-.-+..++ |..|......+.+....|+|+.|...+.-+-..-.....+...+-...+.+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 345678877777666666 77787778889999999999999988877665555555566666677788999999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
..+..+...-+++++..--+.....+|-+++|..++++.+.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999988877777887777777777889999999999999999873
No 322
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.85 E-value=0.054 Score=45.71 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (425)
....++.+-|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456677777777777777777777777777777777777777777777777777754
No 323
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.68 Score=44.81 Aligned_cols=139 Identities=15% Similarity=0.043 Sum_probs=105.6
Q ss_pred HHcCCHHH-HHHHHHhcc---cchHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q psy1863 146 LRMNDVSQ-AVDVLKSCD---EMTSSAATN--LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG 219 (425)
Q Consensus 146 ~~~g~~~~-A~~~~~~~~---~~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 219 (425)
+..+.... ++..+...+ +.++..+.. +...+...++...+.-....++..+|.+..+..+++......|....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33444443 555555444 445544322 577778889999999999999999999999999999998888877777
Q ss_pred HHHHHH-HHhcCcCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy1863 220 KELYVH-ALDNDATCIEALYNL------GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284 (425)
Q Consensus 220 ~~~~~~-al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (425)
...+.. +....|.+..+...+ +.....+|+..++.....++....|.++.+...+.....+...+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 666665 888889888776665 88888899999999999999999999988877777765544443
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.71 E-value=5.6 Score=40.37 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=108.3
Q ss_pred chhhHHHHHHHHHHH-HcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q psy1863 132 SLAQDLEINKAVTFL-RMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--- 198 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 198 (425)
.....+.+.+|.+++ ...+++.|..++.+++ .....+.+.++.++...+... |...+++.++....
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 344667889999887 7889999999999997 123445667788888888777 99999999887544
Q ss_pred C-HHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcC--cCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----
Q psy1863 199 N-SAAFVNLG--NCAMAREDYVKGKELYVHALDND--ATCIE----ALYNLGLAHKHLNEYSDSLECFHKLQAIVP---- 265 (425)
Q Consensus 199 ~-~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 265 (425)
. ....+.+- ......+++..|+..++...... +.++. +....+.+....+..+++++..+++.....
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 2 22223332 22233379999999999998875 34433 233456677778888888888887744321
Q ss_pred ------CCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q psy1863 266 ------SMPEVLYQIAS--LYEITGDVEQASDVNEN 293 (425)
Q Consensus 266 ------~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 293 (425)
....++..+-. ++...|+++.+...+++
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12334444443 45567887777666555
No 325
>KOG4814|consensus
Probab=94.65 E-value=1.2 Score=43.68 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
-+-|.-.++..+|..+++.|...+..-|.+ .....+++.||..+.+.|.|.+++++|-+.+|.++-....+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 345666788899999999999999876654 35578899999999999999999999999999999888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhC
Q psy1863 244 HKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~ 264 (425)
....|.-++|+.+..+.....
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhh
Confidence 889999999999988876653
No 326
>KOG3807|consensus
Probab=94.53 E-value=3.5 Score=37.21 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND----------------- 230 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------- 230 (425)
.-+.+-...++..+..+-++....+++++|..+.++..++.- ..--..+|.+.++++++..
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 334455556666777778888888999999988888877653 2233556777777776541
Q ss_pred ------cCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 231 ------ATC--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 231 ------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
..+ ..+...++.|..++|+..+|++.++...+-.|-. ..++-++...+..+.-|......+
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2234578999999999999999999888777722 234455555555554444433333
No 327
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=2.4 Score=41.24 Aligned_cols=100 Identities=17% Similarity=-0.015 Sum_probs=54.1
Q ss_pred HHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCHHHHHHH------HHHHHH
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEE-ACTADTYNSAAFVNL------GNCAMA 212 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~ 212 (425)
..+...++...+...+...+ +.++.+..+||......|..-.+...+.. +....|.+......+ +.....
T Consensus 75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence 33344455544444444444 55666666666665555555544444443 555566665553333 555555
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
.|+..++....+++....|.++.+...+..
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 666666666666666666666554444333
No 328
>KOG2581|consensus
Probab=94.39 E-value=0.95 Score=41.77 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC-HH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN-SA 201 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~ 201 (425)
.....+..++++.+|.++-...+ --.+..|+.+..+|...|+...-...+...+... ... ..
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav 210 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV 210 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence 33444556789999988877665 2345678888888888998777666666555432 222 23
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--Cc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDN--DA--TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (425)
..+.+-..|...+.|+.|-....+..-- +. ..+..++.+|.+..-+++|..|.++|-.++...|+..
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4556677888899999998887776521 11 2356678899999999999999999999999999743
No 329
>KOG2041|consensus
Probab=94.37 E-value=6.1 Score=39.41 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT--YNSAAFVNLGNCAMAREDYV 217 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~ 217 (425)
..|.+-.--|+|++|.++|-.+-.. -.--.++...|||-.-..+++..-.-+. ....++.++|..+..+..|+
T Consensus 739 q~aei~~~~g~feeaek~yld~drr-----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRR-----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchh-----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555567888888777666311 1122345566666666655554322221 22467889999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+|.++|.+.-.. -++..+++....|++- +.....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 814 ~A~~yY~~~~~~--------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT--------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhccch--------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 999998875322 3456677777666653 334455688888888899999999999999988876
No 330
>KOG2041|consensus
Probab=94.17 E-value=6.8 Score=39.12 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
.+.+.++|..+..+..+++|.++|...- -.-++..+++...+|++-.. ....-|++...+-.+|..+...|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~-----~~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG-----DTENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhc
Confidence 3445667777777777777777777662 12244555666555554333 23344666667777777777777
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
--++|.+.|-+.- .|. + .-..+..++++.+|.+.-++- ..|.........+.-+...++.-+|++..++
T Consensus 867 MC~qAV~a~Lr~s--~pk---a---Av~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rk 935 (1189)
T KOG2041|consen 867 MCDQAVEAYLRRS--LPK---A---AVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRK 935 (1189)
T ss_pred hHHHHHHHHHhcc--CcH---H---HHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhh
Confidence 7777777664421 111 1 112333445556665554432 1122222222223333444555555555555
No 331
>KOG1463|consensus
Probab=94.13 E-value=4.3 Score=36.76 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=16.1
Q ss_pred HHHHhhHHhccccHHHHHHHHHHhhH
Q psy1863 18 LIDESCICARNQDFKAALEKAKLASN 43 (425)
Q Consensus 18 l~~~~~~~~~~g~~~~A~~~~~~a~~ 43 (425)
+.+.+.......+.+++...++..+.
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~ 32 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLN 32 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhh
Confidence 35555556666666777776666554
No 332
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.10 E-value=0.79 Score=48.03 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHL----N---EYSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
....++...+.|+.|+..|++.-...|.. .++.+..|.....+ | .+++|+..|++. .-.|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 34567788899999999999999999876 45777888877642 3 477888888764 3456677788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH-H--------HHHHHh---hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA-L--------SQLHRE---MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~--------~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
|.+|..+|++++-+++|.- |++..|++| + ..|-.. ....|..+.--++...|..+...
T Consensus 559 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLL-ALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHHHHhhhHHHHHHHHHH-HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence 9999999999999999999 999999988 2 222222 55667777777888888776543
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.99 E-value=3.4 Score=39.79 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=75.7
Q ss_pred HHHHHHcCCHHHHHHHHH--hcccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863 142 AVTFLRMNDVSQAVDVLK--SCDEMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~--~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (425)
-......|+++++..... +.+|.- ..-...++..+..+|-++.|+.+.. ++...+.|+ .+.|+.+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~ 336 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDI 336 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHH
Confidence 345567788888766665 223322 3335566777777888887776542 345555544 56788888
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
|.+..+ ..+++..|..||.....+|+++-|..+|.++- -+..|..+|...|+.+.=...... +...
T Consensus 337 A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~-a~~~ 402 (443)
T PF04053_consen 337 ALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKI-AEER 402 (443)
T ss_dssp HHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH-HHHT
T ss_pred HHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHH-HHHc
Confidence 776533 23467788888888888888888888887652 233455566666766554444444 4433
No 334
>KOG2422|consensus
Probab=93.95 E-value=5.2 Score=38.93 Aligned_cols=152 Identities=14% Similarity=0.047 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q psy1863 149 NDVSQAVDVLKSCD---------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------------------ 195 (425)
Q Consensus 149 g~~~~A~~~~~~~~---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------ 195 (425)
.-|++|...|.-+. |-+...+..++.+...+|+.+-|....++++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 45566666665554 778899999999999999999888887777632
Q ss_pred ---CCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHH-----h
Q psy1863 196 ---DTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDAT-CIEALYNLGLAH-KHLNEYSDSLECFHKLQ-----A 262 (425)
Q Consensus 196 ---~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al-----~ 262 (425)
.|.|-.. ++..-....+.|-+.-|.++++-.++++|. +|.+...+-.+| .+..+|+==++.++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1333322 233344456789999999999999999998 777666555555 45667776666666552 2
Q ss_pred hCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCcch
Q psy1863 263 IVPSMPEVLYQIASLYEITGD---VEQASDVNENLLLEAVRND 302 (425)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~a~~~~p~~ 302 (425)
..|+.+. -..+|..|..... -..|...+.+ |+...|.-
T Consensus 412 ~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~q-Al~~~P~v 452 (665)
T KOG2422|consen 412 QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQ-ALKHHPLV 452 (665)
T ss_pred hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHH-HHHhCcHH
Confidence 3343322 2345555555544 5778889999 99988853
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.72 E-value=3.2 Score=33.82 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD-----EMT--SSAATNLSFIYFLQGEVEQAEKMAEEAC-TADTYNSAAFVN 205 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~ 205 (425)
..-..+..|.+....|+...|+..|.++- |.- -.+...-+.++...|-|++-....+..- ..+|--..+.-.
T Consensus 93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEA 172 (221)
T COG4649 93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREA 172 (221)
T ss_pred hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHH
Confidence 33344778999999999999999999987 322 2445566778888999998766555432 234555567788
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
||..-.+.|++.+|.+.|.+... +...+....+.+.+.+
T Consensus 173 LglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 99999999999999999999886 4455555556655544
No 336
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.67 E-value=6.5 Score=37.18 Aligned_cols=165 Identities=15% Similarity=-0.035 Sum_probs=109.4
Q ss_pred HHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Q psy1863 158 LKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN----- 229 (425)
Q Consensus 158 ~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 229 (425)
+++++ +..+.+|+.........++-+.|+...++++...|. ....++.+|....+-+.-..+|+++.+.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence 44444 777888888888888899999999999888877776 5566777777777766666666666532
Q ss_pred -------------CcCc-H-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCC
Q psy1863 230 -------------DATC-I-----------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL-YEITGD 283 (425)
Q Consensus 230 -------------~~~~-~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~ 283 (425)
+|.. + .+|.-+-..-.+..-.+.|...|-++-+..-..+.++..-|.+ |...|+
T Consensus 368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d 447 (660)
T COG5107 368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD 447 (660)
T ss_pred hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence 1110 1 1222233333445567788888887755443344444433333 456789
Q ss_pred HHHHHHHHHHHHHhcCcchH------HHHHHHh-hHHHHHHHHHHHHhhc
Q psy1863 284 VEQASDVNENLLLEAVRNDA------LSQLHRE-MKHEAEKCILTSAKLI 326 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~~~------~~~l~~~-~~~~A~~~~~~a~~~~ 326 (425)
+.-|...|+- .+...|+++ +..|-.+ +-..|...|++++...
T Consensus 448 ~~ta~~ifel-Gl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 448 RATAYNIFEL-GLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred cchHHHHHHH-HHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 9999999999 999999988 2223333 7778888888776543
No 337
>KOG0890|consensus
Probab=93.35 E-value=19 Score=41.47 Aligned_cols=107 Identities=8% Similarity=0.086 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PS----------- 266 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------- 266 (425)
....|...|.+....|+++.|....-+|.+.. -+.+....|...+..|+-..|+..+++.+..+ |+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 35667777777777777777777777776654 45667777777777777777877777777543 21
Q ss_pred -----CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863 267 -----MPEVLYQIASLYEITGDV--EQASDVNENLLLEAVRNDA--LSQLH 308 (425)
Q Consensus 267 -----~~~~~~~la~~~~~~g~~--~~A~~~~~~~a~~~~p~~~--~~~l~ 308 (425)
...+...++.-....|++ ..-+..|.. +.+..|... ++.+|
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~-~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHD-AKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHcccccCceeeHH
Confidence 012334444444555554 344566777 777777443 44444
No 338
>KOG1839|consensus
Probab=93.32 E-value=1 Score=47.87 Aligned_cols=130 Identities=17% Similarity=0.112 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------- 195 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 195 (425)
....+..++..+...|+.++|+..-.++. +.....+.+++...+..+....|...+.++..+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 35556788999999999999999988776 667788899999999999999999999998765
Q ss_pred -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 196 -DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDA--------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 196 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.|.......+++.++...++++.|+.+.+.|+.... .....+..++..+..++++..|+...+....+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 366667788999999999999999999999998632 12445566666666677776666666555443
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.22 E-value=0.19 Score=44.54 Aligned_cols=80 Identities=8% Similarity=-0.068 Sum_probs=70.6
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ-IASLYEITGDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 223 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~a~~~~p~ 301 (425)
|.++-...|+++..|...+....+.|-+.+-...|.++++.+|.+.+.|.. .+.-+...++++.+...|.+ ++.++|+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~-glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK-GLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh-hhccCCC
Confidence 444555678899999999988889999999999999999999999999876 55567788999999999999 9999999
Q ss_pred hH
Q psy1863 302 DA 303 (425)
Q Consensus 302 ~~ 303 (425)
+|
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 99
No 340
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.17 E-value=0.58 Score=43.33 Aligned_cols=92 Identities=10% Similarity=0.033 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863 169 ATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNS----------AAFVNLGNCAMAREDYVKGKELYVHALDND 230 (425)
Q Consensus 169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (425)
-..-|..++++++|..|.--|..++++. |..+ .+--.+..||..+++.+-|+....+.+.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 3445677888999999999999998874 1111 124567888999999999999999999899
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
|.++.-+...|.|+..+.+|.+|-..+--+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888888888887765443
No 341
>KOG1914|consensus
Probab=93.17 E-value=8.8 Score=37.20 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
|.+..+|+.|-.-+..+ -+++....|++.+...|..+.+|.......+..++|+.-.++|.+++..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66666777666666555 6777777777777777777777777777777777777777777777654
No 342
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.16 E-value=0.95 Score=40.22 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 151 VSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 151 ~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
|..-+....+++ .....++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 137 f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 137 FDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 333343444444 4556677777777888888888888888888888888888888888888888888888877776653
No 343
>KOG3783|consensus
Probab=93.15 E-value=8.8 Score=37.15 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCDE-----MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG 207 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (425)
.+..|..+...|+.+.|+..+...++ -..-.++.+|.++..+.+|..|...+....+.+..+.-.|..++
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 34557777777777778888877773 23445667788888888888888888888777665555554444
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.11 E-value=0.53 Score=34.38 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=29.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 177 FLQGEVEQAEKMAEEACTADT----Y-----NSAAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p----~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
...|+|.+|++.+.+..+... . ...+..++|.++...|++++|+..+++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555444443321 1 1234556666666667777777666666665
No 345
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.94 Score=39.74 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=34.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++.-|+.+.+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3344455555555555555555555555555555555555555555555555555555554443
No 346
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.00 E-value=0.47 Score=34.64 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=41.4
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 210 AMAREDYVKGKELYVHALDNDAT---------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
..+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35678899998888887765221 135667788888888888888888888887643
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=6.3 Score=34.89 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=117.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHH---HHHHhcC--CCCHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMA---EEACTAD--TYNSAA 202 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~---~~al~~~--p~~~~~ 202 (425)
+.+|....+.+++++|+..|.+.+ .....+...++.+|...|++..--... +.+.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 677888899999999999999988 334567789999999999886543332 2222221 222222
Q ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q psy1863 203 FVNLGNCA-MAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPE 269 (425)
Q Consensus 203 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 269 (425)
...+..-+ .....++.-+..+...++-.... ...-..+..++++.|+|.+|+......+.- .|+-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222221 12344566666666665542211 112245778889999999999987766543 233445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CcchHHHHHHHh---------hHHHHHHHHHHHHhhcC
Q psy1863 270 VLYQIASLYEITGDVEQASDVNENLLLEA-----VRNDALSQLHRE---------MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~-----~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~ 327 (425)
++..=..+|....+..++...+.. |... .|.-.-.++... ++.-|..+|-++++-+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTa-Art~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTA-ARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHH-HHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 666667788888888887777766 5443 232222222221 88899999998887664
No 348
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.89 E-value=0.42 Score=27.71 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKM 188 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~ 188 (425)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 349
>KOG3616|consensus
Probab=92.74 E-value=12 Score=37.70 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhh
Q psy1863 342 VQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVS 400 (425)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~ 400 (425)
++.-+...+.|+-.......+..+.+.|+..+|+..+.+.. .|.+|.|..+...+..
T Consensus 1312 idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~g--a~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1312 IDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHG--APANPANFNIYKLIFE 1368 (1636)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC--CCCCcccccHHHHHHH
Confidence 33333334444333333446777889999999999998873 5666777665555433
No 350
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.71 E-value=1.5 Score=46.15 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHh----c---CHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAR----E---DYVKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
...++.....|++|+..|++.....|+-. ++.+..|.+...+ | .+++|+.-|++.- -.|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 34567777889999999999999888754 6678888877654 2 4667777776643 2455677788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 242 LAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
.+|.++|++++-++++.-+++..|+.|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999887753
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.68 E-value=0.19 Score=26.66 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q psy1863 169 ATNLSFIYFLQGEVEQAEKM 188 (425)
Q Consensus 169 ~~~lg~~~~~~g~~~~A~~~ 188 (425)
...+|.++...|++++|...
T Consensus 4 ~~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 33444444444444444443
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.60 E-value=5.5 Score=33.43 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHcCCHHHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT----CIEALYNLGLAHKHLNEYSDS 253 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A 253 (425)
++...+.+|..|. ..+.++|+.++-+++++.+. +++++..|+.++.++|+++.|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444433 44455555555555554221 255555555555555555554
No 353
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.13 E-value=11 Score=35.76 Aligned_cols=125 Identities=7% Similarity=-0.014 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMT-----SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
...|.++.+++++.+|.++|.++. ... .+++.+.-...+-+++.+.-.......-+..|..+....-.|...
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA 89 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 445777778888888888777776 111 123333333334455666665555555566676666666777777
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEAL---------------YNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.+.|+|.+|+..+...-..-..+...| ...+.++...|++.++...+++.+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 777777777776665554422211111 13455556666666666666665543
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.88 E-value=0.63 Score=26.96 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKEL 222 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~ 222 (425)
++.+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 355
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.48 E-value=0.44 Score=33.07 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+|.+...++..|+.+-..|+|++|+..+++|+..-
T Consensus 2 le~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 2 LERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999998755
No 356
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.40 E-value=0.82 Score=41.03 Aligned_cols=62 Identities=19% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++......+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666665543345566666665555
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.37 E-value=1.4 Score=39.12 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++ ..+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~-l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ-LKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH-HHH
Confidence 556777888888888888888888888888888888888888888888888888888888 444
No 358
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=1.7 Score=38.13 Aligned_cols=74 Identities=14% Similarity=-0.069 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 240 (425)
....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|++.++..++..|+.+.+-.-.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 44556667788899999999999999999999999999999999999999999999999999999987665433
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.15 E-value=2.7 Score=29.21 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=32.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHH
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA---SLYEITGDVEQASDVNEN 293 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~ 293 (425)
-|.-++...+.++|+..+.++++..++.+.-+..+| .+|...|++++.+.+--.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666667777777777777666555444333 456666777766665443
No 360
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.98 E-value=0.98 Score=40.51 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
|..+|.+|+.+.|++...++.+|.++...|+.=.|+=+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666566655555554443345555555555555
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.72 E-value=0.47 Score=25.08 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~ 257 (425)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 362
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.71 E-value=16 Score=34.81 Aligned_cols=31 Identities=10% Similarity=-0.049 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 193 (425)
|..+......|...++.+++.+|+..+..--
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~ 106 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWK 106 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555555555555555555555554433
No 363
>KOG1538|consensus
Probab=90.67 E-value=8.5 Score=38.11 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=32.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
...+...++|++|....++--+.- +.+++..|..+....+|++|.+.|.++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344556777888776655433322 446666777777777777777776654
No 364
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.61 E-value=4.1 Score=34.17 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHH
Q psy1863 232 TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS----MPEVLYQIASLYEITGDVEQA 287 (425)
Q Consensus 232 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A 287 (425)
+++...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555556665554 33556666666666665432 355666666666666666655
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.60 E-value=12 Score=33.28 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Q psy1863 264 VPSMPEVLYQIAS-LYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 264 ~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
.|...+.+...+. .|...++...|...+.. ..+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~-f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDT-FTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHH-HHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHH-HHHH
Confidence 4455555555444 36667888888876666 4443
No 366
>KOG1464|consensus
Probab=90.36 E-value=12 Score=32.94 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=105.4
Q ss_pred cCCHHHHHHHHHhcc---c----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHhc
Q psy1863 148 MNDVSQAVDVLKSCD---E----MTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN-SAAFVNLGNCAMARE 214 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~g 214 (425)
..+.++|+.-|.+++ + ....++-.+..+++.+|+|++-...|.+.+..- .+. ....+.+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 347888999999988 2 234566777888999999999888888876431 111 122222222222233
Q ss_pred CHHHHHHHHHHHHhc--CcCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------CCHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDN--DATCI----EALYNLGLAHKHLNEYSDSLECFHKLQAIVP------------SMPEVLYQIAS 276 (425)
Q Consensus 215 ~~~~A~~~~~~al~~--~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~ 276 (425)
+.+--..+|+..+.. +..+. .+...+|.+|+..|.|.+-...+++.-..-. .-..+|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 334444444444432 11222 2335688889888888877777666543321 11234444456
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCcchH----HHHHHHh---------hHHHHHHHHHHHHhhcCC
Q psy1863 277 LYEITGDVEQASDVNENLLLEAVRNDA----LSQLHRE---------MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~----~~~l~~~---------~~~~A~~~~~~a~~~~~~ 328 (425)
.|..+.+-.+-...|++ ++.+...-| +-.+-.+ .+++|-.-|-++++-...
T Consensus 200 mYT~qKnNKkLK~lYeq-alhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQ-ALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhhhhcccHHHHHHHHH-HHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 67777777777788888 877654333 2222222 677777777777765543
No 367
>KOG4014|consensus
Probab=90.22 E-value=9.4 Score=31.49 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHH-----cCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhcCCCCHH
Q psy1863 135 QDLEINKAVTFLR-----MNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQ-----G--EVEQAEKMAEEACTADTYNSA 201 (425)
Q Consensus 135 ~~~~~~~a~~~~~-----~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~ 201 (425)
++..+..|..++. .++...|+..+..+- ...+.+...+|.++..- + +..+|.+++.++.++. +..
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~ 145 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGE 145 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--Cch
Confidence 4444555654442 347889999998887 77888999999988762 2 3778999999987664 556
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
+.+.|...|+... ++ +....|. .+.. .+..+.-..+.+.|.++--++-+++ ++.+..++...|.
T Consensus 146 aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~---~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 146 ACFLLSTMYMGGK--EK-------FKTNAPGEGKPLD---RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK 211 (248)
T ss_pred HHHHHHHHHhccc--hh-------hcccCCCCCCCcc---hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence 6777776665432 22 2222331 1211 2233344567788888888877664 5667777777665
Q ss_pred Hc----CCHHHHHHHHHHHHHhc
Q psy1863 280 IT----GDVEQASDVNENLLLEA 298 (425)
Q Consensus 280 ~~----g~~~~A~~~~~~~a~~~ 298 (425)
.- .+.++|..+-.+ +.++
T Consensus 212 lGDGv~Kde~~Aekyk~r-A~e~ 233 (248)
T KOG4014|consen 212 LGDGVPKDEDQAEKYKDR-AKEI 233 (248)
T ss_pred ccCCCCccHHHHHHHHHH-HHHH
Confidence 42 356667666666 5554
No 368
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.15 E-value=4.1 Score=38.44 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 193 (425)
+.+..++.-.|||..|++.++..- +-...+++.+|.+|+.+++|.+|++.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888999999999877664 4456678889999999999999999988876
No 369
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.12 E-value=0.62 Score=27.34 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
++..||.+....++|++|+..|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 370
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.07 E-value=0.61 Score=27.38 Aligned_cols=27 Identities=26% Similarity=0.067 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACT 194 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 194 (425)
++..||.+-...++|++|+.-|.++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.80 E-value=20 Score=34.66 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (425)
...+..+.++|-.+.|+.. ..+++..+.|+ ...|+++.|.+..+ ..+++..|..||...+.+|+++-
T Consensus 299 ~~i~~fL~~~G~~e~AL~~-----~~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQF-----VTDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHH-----SS-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHH
T ss_pred HHHHHHHHHCCCHHHHHhh-----cCChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHH
Confidence 3445555666666666644 23344444433 45677776665443 23356677777777777777777
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
|..+|+++-. +..+..+|.-.|+.+.=.+..+.+
T Consensus 366 Ae~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 366 AEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7777766432 234445555566554444433333
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.60 E-value=1.9 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEE 191 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 191 (425)
+..|.-++...+.++|+..+++++ ++...++-.+..+|...|+|.+++.+...
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555665555555 22223333344445555555555554433
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.88 E-value=1.6 Score=30.10 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIK 50 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~ 50 (425)
||+....++..|+.+-.+|++++|+..+++++..=..+..
T Consensus 2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999886644444
No 374
>KOG2581|consensus
Probab=88.47 E-value=22 Score=33.32 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--C
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--DTY--N 199 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~--~ 199 (425)
+++.+++-+..++-..|+...-...+...+ ...+...+.|=..|...+.|+.|-....+..-- ..+ .
T Consensus 167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ 246 (493)
T KOG2581|consen 167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEW 246 (493)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHH
Confidence 345666666777777777665555554444 223444566677888888999998877776421 122 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (425)
+..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3457788999999999999999999999998874
No 375
>KOG0890|consensus
Probab=88.46 E-value=13 Score=42.53 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=92.6
Q ss_pred CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC--------
Q psy1863 129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-TY-------- 198 (425)
Q Consensus 129 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~-------- 198 (425)
.......+.++..|.+....|+++.|...+-.+. ...+.++...|...+..|+-..|+..+++.++.+ |+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 3344567888899999999999999988877777 6678888899999999999999999999988665 22
Q ss_pred --CH------HHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHH------------HcCCHHH---H
Q psy1863 199 --NS------AAFVNLGNCAMARED--YVKGKELYVHALDNDATCIEALYNLGLAHK------------HLNEYSD---S 253 (425)
Q Consensus 199 --~~------~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~------------~~g~~~~---A 253 (425)
.. .+...++......|+ ...-+++|..+.+..|.....++.+|..|. +.|++.. +
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence 11 122233333333444 244577888888888877666666664442 2355555 5
Q ss_pred HHHHHHHHhhC
Q psy1863 254 LECFHKLQAIV 264 (425)
Q Consensus 254 ~~~~~~al~~~ 264 (425)
+-.|.+++..+
T Consensus 1824 ~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1824 IYFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHHhc
Confidence 55555666544
No 376
>KOG0529|consensus
Probab=88.45 E-value=22 Score=33.34 Aligned_cols=96 Identities=16% Similarity=0.028 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC----CHHHHHHH
Q psy1863 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMARED--YVKGKELYVHALDNDATCIEALYNLGLAHKHLN----EYSDSLEC 256 (425)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~ 256 (425)
++-+.+...++..+|+...+|+....++.+.+. +..=+.+++++++.+|.+..+|...-.+..... ...+=+++
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 334455555556666666666666655554442 455555566666666655555544333332221 12344555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q psy1863 257 FHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~ 278 (425)
..+++..++.+-.+|.....+.
T Consensus 172 tt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHhccchhhhHHHHHHHHH
Confidence 5555555555555555554443
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.07 E-value=12 Score=35.24 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS--AATN--LSFIYFLQGEVEQAEKMAEEACTA 195 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~--~~~~--lg~~~~~~g~~~~A~~~~~~al~~ 195 (425)
+.....+..++..++|..|...+..+. +.... .+.. .|..++..-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677888999999999999998887 22222 3333 455567788999999999987765
No 378
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.91 E-value=0.97 Score=31.53 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+.+...++..|+.+-..|+|++|+..+.+|+..-
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998765
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.90 E-value=2.7 Score=37.23 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
.+...+..|...|.+.+|++..++++..+|-+...+..+-.++..+||--.+...|++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3345577788999999999999999999999999999999999999999999888888
No 380
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.66 E-value=20 Score=31.90 Aligned_cols=140 Identities=13% Similarity=0.023 Sum_probs=65.7
Q ss_pred CCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 129 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
..+.-..+++..+|..+.+.|++.+|..+|-..-.....+...+-...... -.|.....+...+.
T Consensus 84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~RaV 148 (260)
T PF04190_consen 84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---------------GYPSEADLFIARAV 148 (260)
T ss_dssp S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---------------cCCcchhHHHHHHH
Confidence 344445778888999999999999888777654211111111111111122 23333444433333
Q ss_pred -HHHHhcCHHHHHHHHHHHHhc----CcC-----------cHHHHH-HHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Q psy1863 209 -CAMAREDYVKGKELYVHALDN----DAT-----------CIEALY-NLGLAHKHLNE---YSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 209 -~~~~~g~~~~A~~~~~~al~~----~~~-----------~~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~p~~~ 268 (425)
.|...++...|...+...++. +|. .|...+ .+-..-...++ |..-.+.|...++.+|...
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~ 228 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFK 228 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHH
Confidence 356667777777766655544 321 121111 11111122233 3344455666666777777
Q ss_pred HHHHHHHHHHHHcCC
Q psy1863 269 EVLYQIASLYEITGD 283 (425)
Q Consensus 269 ~~~~~la~~~~~~g~ 283 (425)
.....+|..|.....
T Consensus 229 ~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 229 EYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHHHHH---S
T ss_pred HHHHHHHHHHCCCCC
Confidence 788888888877543
No 381
>KOG0529|consensus
Probab=86.96 E-value=13 Score=34.77 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=70.6
Q ss_pred CHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHH
Q psy1863 150 DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGE--VEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGK 220 (425)
Q Consensus 150 ~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 220 (425)
-+++-+.+...++ |+...+|+....++.+.+. +..=+...+++++.+|.+..+|...=.+... .....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4555566666666 8888888888888887654 5788889999999999888776544333322 22356668
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 221 ELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
.+..+++..++++..+|.+...+..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8888999889999999988777665
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.91 E-value=38 Score=34.42 Aligned_cols=28 Identities=7% Similarity=-0.134 Sum_probs=20.0
Q ss_pred hhHHhccccHHHHHHHHHHhhHHHHHHH
Q psy1863 22 SCICARNQDFKAALEKAKLASNKERVLI 49 (425)
Q Consensus 22 ~~~~~~~g~~~~A~~~~~~a~~~~~~l~ 49 (425)
++.....|..+.|...+.++++.-..+.
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 4555667777799999999887664333
No 383
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.33 E-value=1.6 Score=29.67 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+...++..|+.+-..|++++|++.+.+|+..-
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 455779999999999999999999999998755
No 384
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.30 E-value=1.3 Score=30.66 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+.+.|+.+|+..-..|+|++|++.|..|++.-
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999998755
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.28 E-value=3.6 Score=36.45 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555666777777777777777777766667777777777777766666666554
No 386
>PF12854 PPR_1: PPR repeat
Probab=85.84 E-value=2.2 Score=24.17 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYV 224 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~ 224 (425)
.+|..+...+.+.|+.++|.+.|+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444455555555544444
No 387
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.63 E-value=35 Score=32.76 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc----cch-----HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc------
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD----EMT-----SSAATNLSFIYFLQGEV-------EQAEKMAEEACTA------ 195 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~----~~~-----~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~------ 195 (425)
.-.+|..++..|+|+-|...|+.+. .+. +.+.-..|.+.+..+.. +....+++.++..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 3467999999999999999999887 111 22333445555555522 1333333333221
Q ss_pred -----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Cc--C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 196 -----DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--DA--T---CIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 196 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~--~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
......+....+.++...|.+.+|...+-+.... .. . .+-.+-..|.++ ..+..
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~ 356 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS 356 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence 1122344556666677778777776666555544 21 1 233334444444 11111
Q ss_pred -CC--C-----CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863 264 -VP--S-----MPEVL-YQIASLYEITGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 264 -~p--~-----~~~~~-~~la~~~~~~g~~~~A~~~~~~~a~~~~p 300 (425)
.| . ....+ ..-|.-|...|+...|..+|.. +.....
T Consensus 357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~-a~~vY~ 401 (414)
T PF12739_consen 357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQ-ALQVYE 401 (414)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHhC
Confidence 11 1 01122 2335667888888888888888 776654
No 388
>KOG1538|consensus
Probab=85.59 E-value=42 Score=33.61 Aligned_cols=218 Identities=15% Similarity=0.073 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD-----------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--- 198 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 198 (425)
-.+|...+..=+++-|.+.|.+.. ...|. -..++.++...|+|.+|.+.|.+.-..+.-
T Consensus 589 ~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEm 667 (1081)
T KOG1538|consen 589 RELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALEM 667 (1081)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHH
Confidence 345666666667777777776654 11122 235677778888888888888763221110
Q ss_pred -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHhhCC
Q psy1863 199 -NSAAFVNLGNCAMAREDYVKGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFH----------KLQAIVP 265 (425)
Q Consensus 199 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~----------~al~~~p 265 (425)
...-.+.++.-++..|..++-....++--+- +-..|. ..|..+...|+.++|+...- -+-+++.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 1112344555566666555544444432211 111222 23555666777777776431 1112222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHH
Q psy1863 266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNW 340 (425)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 340 (425)
...+.+..++..+..+..+.-|.+.|.+ .-. ...+-.+ ++.+|....++. |...+..+..-..|
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k-~gD------~ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLK-MGD------LKSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHH-hcc------HHHHhhheeecccchHhHhhhhhC----ccccccccchHHHH
Confidence 3344445555555555555566666655 211 1111111 555555444333 22222111111122
Q ss_pred HHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 341 CVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
+.+... ....-.+|.+.|+-.+|...+++..
T Consensus 814 LAE~Dr-----------FeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 814 LAENDR-----------FEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhh-----------HHHHHHHHHHhcchHHHHHHHHHhh
Confidence 222111 1122356778888888888888874
No 389
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.23 E-value=1.7 Score=30.17 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+...|+.+|+..-..|+|++|+.++..++..-
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 366889999999999999999999999998755
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.13 E-value=2 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 358 EINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 358 ~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
.+.+|..|..+|+.+.|.+.++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 3578999999999999999999986
No 391
>PF13041 PPR_2: PPR repeat family
Probab=85.10 E-value=5.7 Score=24.69 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
.+|..+-..+.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34444555555555555555555555543
No 392
>KOG0546|consensus
Probab=85.07 E-value=1.5 Score=39.91 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
.+++.+-+..+.+..|+.....++..+++...+++..+..+....++++|++.++.+....|++..+...
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555555444333
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.84 E-value=2.4 Score=23.14 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhcCcCcHHHH
Q psy1863 218 KGKELYVHALDNDATCIEAL 237 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~ 237 (425)
.|...|++++...|.++..|
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 5 RARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHCCCChHHH
Confidence 33333333333333333333
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.56 E-value=11 Score=33.29 Aligned_cols=60 Identities=22% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
....+|..|+..|++++|.++|+.+...... ...+...+..|+...|+.++.+.+.-+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3456677777777777777777777544221 14455667777777777777766655543
No 395
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.41 E-value=17 Score=28.27 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=18.5
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
+|+-++--+.+....+....+|..+..+|.+|.+.|+..+|-+.+.+|-
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3333333334444333333334444444444544554444444444443
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.09 E-value=43 Score=32.54 Aligned_cols=173 Identities=13% Similarity=0.043 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
|-+...+..+-.++...-++.-....+.+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344455555555555556666667777777664 4577888888888887 5577788888888888777777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhc-CcchHHHHHHHhhHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhc
Q psy1863 277 LYEITGDVEQASDVNENLLLEA-VRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQ 355 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~-~p~~~~~~l~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (425)
.|.+ ++...+..+|.+ ++.. -|.-. ...-.+.+.+.....|++.+.....- ..+....-.....
T Consensus 141 ~yEk-ik~sk~a~~f~K-a~yrfI~~~q--------~~~i~evWeKL~~~i~dD~D~fl~l~-----~kiqt~lg~~~~~ 205 (711)
T COG1747 141 KYEK-IKKSKAAEFFGK-ALYRFIPRRQ--------NAAIKEVWEKLPELIGDDKDFFLRLQ-----KKIQTKLGEGRGS 205 (711)
T ss_pred HHHH-hchhhHHHHHHH-HHHHhcchhh--------hhhHHHHHHHHHHhccccHHHHHHHH-----HHHHHhhccchHH
Confidence 8777 888888889988 6643 22111 01112233444444444433222110 0000000000001
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 356 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
.+.-.+-.-|....++++|+.+++.+.+...
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 1111233456677889999999987755443
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.88 E-value=11 Score=33.22 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863 151 VSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY------NSAAFVNLGNCAMAREDYVKGKEL 222 (425)
Q Consensus 151 ~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 222 (425)
...|...|++.- .........+|..|+..|++++|.++|+.+...... ...+...+..|+...|+.+..+.+
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345555555544 344556678999999999999999999999765422 235677888999999999988877
Q ss_pred HHHHH
Q psy1863 223 YVHAL 227 (425)
Q Consensus 223 ~~~al 227 (425)
.-+.+
T Consensus 241 ~leLl 245 (247)
T PF11817_consen 241 SLELL 245 (247)
T ss_pred HHHHh
Confidence 66554
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.83 E-value=2.3 Score=25.93 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
+.+|..|...|+.+.|..++++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555554
No 399
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=83.78 E-value=2.2 Score=29.53 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+...|+.+|+..-..|++++|+..+.+|+..-
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999998755
No 400
>PF12854 PPR_1: PPR repeat
Probab=83.60 E-value=3.5 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+..+|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445566666666666666666666554
No 401
>PF13041 PPR_2: PPR repeat family
Probab=82.96 E-value=8.2 Score=23.95 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
+|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4444555555555555555555555443
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.84 E-value=4 Score=22.18 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 248 NEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888888887766543
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.79 E-value=9.6 Score=32.44 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=53.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (425)
..-+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|..-++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34567788899999999999999999988888888999999999999999999988888754
No 404
>KOG0546|consensus
Probab=82.35 E-value=2 Score=39.10 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc--------------cc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD--------------EM--------TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT 197 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~--------------~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 197 (425)
..+...++.++++.|..-+.+++ ++ ......+++.+-+..+.+..|+.....++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 34566778888888877777765 11 123455678888889999999999888888889
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247 (425)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 247 (425)
....+++..+..+....++++|+..++.+....|++......+..+-...
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999887766555544433
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.25 E-value=2.5 Score=39.82 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTAD---------TYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (425)
.|..++.-.|||..|++.++.. +++ +-+..+++.+|-+|+.+++|.+|+..|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666665432 111 2223445556666666666666666666555
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.98 E-value=37 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=17.6
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHH
Q psy1863 357 LEINKAVTF-LRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 357 ~~~~la~~~-~~~g~~~~A~~~~~~~~ 382 (425)
+.++.+..| .-+|+.++|+++.+++.
T Consensus 170 l~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 170 LALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444555544 55899999999888874
No 407
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.67 E-value=3.9 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.....++..|+..-..|++++|+..+.+|+..-
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456779999999999999999999999998755
No 408
>KOG0686|consensus
Probab=80.43 E-value=16 Score=34.16 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--------CcH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDA--------TCI 234 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~ 234 (425)
-.++..+|.-|..-|+++.|++.|.++-...... ...+.++-.+-...|+|..-..+-.++.+.-. -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567778888888888888888888865554333 34466677777777887777776666665410 012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 235 EALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 235 ~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
.+...-|.+.+.+++|..|..+|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555666667778888888876553
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.10 E-value=18 Score=30.90 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=53.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863 174 FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233 (425)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (425)
.-+...+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345677889999999999999999999988888899999999999999999999998876
No 410
>KOG3807|consensus
Probab=78.70 E-value=29 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863 360 NKAVTFLRMNDVSQAVDVLKSCDEM 384 (425)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~~~~~ 384 (425)
.+|.|-.+.|+..+|++.++...+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 5899999999999999999988543
No 411
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=78.62 E-value=3.8 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+...|+.+|+..-..|+|++|+..+..++..-
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999988754
No 412
>KOG0686|consensus
Probab=78.62 E-value=22 Score=33.35 Aligned_cols=152 Identities=9% Similarity=0.088 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHH
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT--------YNSAA 202 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~ 202 (425)
.+..+|..|...|+++.|++.|.++. ......+.++-.+-...|+|..-..+-.+|.+.-. -.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 44678999999999999999999976 44566777888888889999988888888776520 01123
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHhhCCCCHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAH-KHLNEYS---DSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~-~~~g~~~---~A~~~~~~al~~~p~~~~~ 270 (425)
...-|.+.+.+++|..|.++|-.+..- .|.+..+|..+..+- +...++. ..-..|+..++..|. .
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq---l 308 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ---L 308 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH---H
Confidence 444566667777999999988776533 344444444332211 1111111 112345555555553 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 271 LYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+.-++..| .++|....+.+++
T Consensus 309 r~il~~fy--~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLRE 329 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHH
Confidence 33333332 2466666666665
No 413
>KOG3783|consensus
Probab=78.19 E-value=71 Score=31.24 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCcchH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIV---P----SMPEVLYQIASLYEITGD-VEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~-~~~A~~~~~~~a~~~~p~~~ 303 (425)
-+..+|.++..+|+...|..+|...+... . -.|.+++.+|.++..+|. ..++..++.+ |-+...+..
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~k-Ar~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLK-AREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHH-HHhhccccc
Confidence 34567888888888888888887776331 1 145678888888888777 8888888888 777665555
No 414
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.77 E-value=4.7 Score=27.99 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+...++.+|+.+-..|++++|+..+.+|+..-
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456779999999999999999999999998755
No 415
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=76.08 E-value=19 Score=25.96 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCChHHH-HHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHH
Q psy1863 1 MERPEEK-FERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERV 47 (425)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 47 (425)
+++||+| ++.==.....-+..+..+.+.|+.++|...+++...+..+
T Consensus 47 ~dspE~kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~l~d~Rn~ 94 (100)
T COG3783 47 PDSPEMKDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKTLKDTRNT 94 (100)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4788888 6553345566777888899999999999988877665543
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.58 E-value=74 Score=30.11 Aligned_cols=60 Identities=15% Similarity=0.024 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHH--HHhcCHHHHHHHHHHHHhc
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNS--AAFVNLGNCA--MAREDYVKGKELYVHALDN 229 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~--~~~g~~~~A~~~~~~al~~ 229 (425)
...+...+..++|..|...+......-|... ..+..++..| ...-++.+|.++++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566677889999999999999988534333 3455554444 5678899999999998865
No 417
>KOG1497|consensus
Probab=74.63 E-value=59 Score=29.53 Aligned_cols=94 Identities=13% Similarity=0.195 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC--TADTYNSA 201 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~ 201 (425)
...+.+.+|.+|-+.++|..|...+.-.- ......+..+|.+|...|+..+|..+..++- ..+..|..
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 34556788899999999998888776554 1223456778888888888888888777753 22345554
Q ss_pred HHHHH----HHHHHHhcCHHHHHHHHHHHH
Q psy1863 202 AFVNL----GNCAMAREDYVKGKELYVHAL 227 (425)
Q Consensus 202 ~~~~l----a~~~~~~g~~~~A~~~~~~al 227 (425)
....+ |.+.-..++|-+|-..|-+..
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 444445666666666665544
No 418
>KOG2114|consensus
Probab=74.36 E-value=1.1e+02 Score=31.69 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
.++...-|..++..|++++|...|.+.+
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3444555666666666666666666665
No 419
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=74.24 E-value=5.9 Score=21.23 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=7.1
Q ss_pred HHHHHhcCHHHHHHHHHH
Q psy1863 208 NCAMAREDYVKGKELYVH 225 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~ 225 (425)
..|.+.|++++|...|++
T Consensus 8 ~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHccchHHHHHHHHHH
Confidence 333334444444443333
No 420
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=74.07 E-value=5.9 Score=21.22 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
|..+-..|.+.|++++|...|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445555556666666666655543
No 421
>KOG0276|consensus
Probab=73.85 E-value=40 Score=33.39 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcC
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g 248 (425)
.+.|+++.|.....++ ++..-|-.||......|++..|.++|.++... ...+...+..+|....+.|
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 4456666555544332 34445666666666666666666666665433 1233444444555444455
Q ss_pred CHHHHH
Q psy1863 249 EYSDSL 254 (425)
Q Consensus 249 ~~~~A~ 254 (425)
+..-|.
T Consensus 723 ~~N~AF 728 (794)
T KOG0276|consen 723 KNNLAF 728 (794)
T ss_pred ccchHH
Confidence 444443
No 422
>KOG0276|consensus
Probab=72.51 E-value=78 Score=31.55 Aligned_cols=131 Identities=24% Similarity=0.188 Sum_probs=82.4
Q ss_pred HHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q psy1863 144 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY 223 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (425)
.....|+++.|...+-.+ | -.....++..+..+|-.++|++ +.++. .-.+ .+..+.|+++.|.++.
T Consensus 595 t~vmrrd~~~a~~vLp~I-~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~rF---elal~lgrl~iA~~la 660 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI-P--KEIRTKVAHFLESQGMKEQALE-------LSTDP-DQRF---ELALKLGRLDIAFDLA 660 (794)
T ss_pred HHhhhccccccccccccC-c--hhhhhhHHhHhhhccchHhhhh-------cCCCh-hhhh---hhhhhcCcHHHHHHHH
Confidence 566778888888754444 3 2344456666666776665544 44332 2222 2345788888887765
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHH-------------HHHHcC
Q psy1863 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--------SMPEVLYQIAS-------------LYEITG 282 (425)
Q Consensus 224 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~-------------~~~~~g 282 (425)
.++ ++..=|..||.+....|++..|.+||.++-.... .+...+..+|. +|...|
T Consensus 661 ~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g 735 (794)
T KOG0276|consen 661 VEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSG 735 (794)
T ss_pred Hhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcC
Confidence 543 5677789999999999999999999998865432 34443444443 344556
Q ss_pred CHHHHHHHHHH
Q psy1863 283 DVEQASDVNEN 293 (425)
Q Consensus 283 ~~~~A~~~~~~ 293 (425)
+++++.+.+..
T Consensus 736 ~~~~C~~lLi~ 746 (794)
T KOG0276|consen 736 DYEECLELLIS 746 (794)
T ss_pred CHHHHHHHHHh
Confidence 66665555544
No 423
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=71.98 E-value=24 Score=33.14 Aligned_cols=42 Identities=19% Similarity=-0.076 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224 (425)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (425)
-+|+..++.++..+|.+......+..+|...|-.+.|...|.
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555555555555555555555555555555553
No 424
>KOG0687|consensus
Probab=71.30 E-value=83 Score=28.76 Aligned_cols=116 Identities=9% Similarity=0.058 Sum_probs=71.2
Q ss_pred CHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHH
Q psy1863 150 DVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT------YNSAAFVNLGNCAMAREDYVKGKE 221 (425)
Q Consensus 150 ~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~ 221 (425)
+++++++-.++-+ ..-.+++.+.|..|.+.||-+.|.+.+.+..+..- +-.-....+|..|....-..+.++
T Consensus 86 eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ie 165 (393)
T KOG0687|consen 86 ELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIE 165 (393)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 3444444444333 45567888899999999999999988887765541 222345666776665544444444
Q ss_pred HHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 222 LYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 222 ~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
-.+..++...+. -......|...+...+|.+|-..|-.++....
T Consensus 166 kak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 166 KAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 444444432221 11223456666777888999888888776654
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.07 E-value=18 Score=30.37 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p 300 (425)
..++.++..| ++.++.+++.++...|+.++|.....+ +....|
T Consensus 133 ~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~-~~~lyP 175 (193)
T PF11846_consen 133 WAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLAR-ARRLYP 175 (193)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCC
Confidence 3334444444 444455555555555555555555555 544444
No 426
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.55 E-value=11 Score=20.68 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHAL 227 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al 227 (425)
..+-..|.+.|++++|...|.+..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555555554443
No 427
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.41 E-value=21 Score=28.26 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
.+.....+...+..|++.-|..+.+.++..+|++..+....+.++.++|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444455555555566666666666555555555555555555554444
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.19 E-value=27 Score=27.62 Aligned_cols=45 Identities=27% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 249 (425)
..+...+..|++.-|..+...++..+|++..+....+.++.++|.
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666666666666665554
No 429
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=67.95 E-value=14 Score=20.22 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
|..+-..|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555666666666666655543
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.86 E-value=12 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=10.9
Q ss_pred HhcCHHHHHHHHHHHHhc
Q psy1863 212 AREDYVKGKELYVHALDN 229 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~ 229 (425)
..|+|++|+.+|.++++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 356666666666666654
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.03 E-value=87 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
+.+|.+....|+|++.+.++++++
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~ 28 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLI 28 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445666667777777777777666
No 432
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.76 E-value=98 Score=27.83 Aligned_cols=103 Identities=9% Similarity=0.013 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC--- 233 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 233 (425)
....+++.++|..|.+.++.+.+.+...+.++..-. -.-....+|.+|..+.=..+.++.....++...+.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 344678999999999999999999888887765422 12335566777766666667776666666654322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
-..-...|...+...+|.+|-..+...+....
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 11223456666667788888888877776554
No 433
>KOG4151|consensus
Probab=66.05 E-value=16 Score=37.14 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMA--REDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
...-|...+..+++..|.--|..++.+-|.+ .....+.+.+++. .|+|..++.-..-++...|....++...+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 3455888888999999988888888877733 3345666666654 578999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
+|...++++-|++...-.....|.+..+..-....
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 99999999999998777788888876655444333
No 434
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.64 E-value=43 Score=25.68 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDAT---------------CIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
..+|...++.+++-.++-+|++|+.+..+ ......|+|..+..+|+.+=.+++++-|
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 34455555555555555555555543110 1234567888888888888888777544
No 435
>KOG2114|consensus
Probab=65.41 E-value=1.8e+02 Score=30.37 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 195 (425)
-..+.+...|+-|+.+.+.-- ......+...|.-++..|++++|...|-+.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 446777888999998887765 344567788899999999999999999998854
No 436
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.22 E-value=15 Score=31.69 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHHHHhhCCC
Q psy1863 247 LNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~ 266 (425)
.++...|+.++++++.++|.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 34566677777777777664
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.97 E-value=29 Score=29.14 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
+..++..++.+...|+ +.++.+++.++...|+.++|.....++....|
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555666666664 66777777777777777777777777777777
No 438
>KOG2561|consensus
Probab=64.75 E-value=69 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.+..-|.+.+.+|+-++|.++++.+...
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3445688888999999999988887654
No 439
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.44 E-value=1.2e+02 Score=27.98 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCc---Cc----HHHHHHHHHHHHHcCCHHHHH
Q psy1863 185 AEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDA---TC----IEALYNLGLAHKHLNEYSDSL 254 (425)
Q Consensus 185 A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~ 254 (425)
+-..|+++.+.-|++... -.+-|.+++..|+|.+....+..+-.... +. +..-...|.....-
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vND------- 112 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIND------- 112 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhcc-------
Confidence 345666666666655433 23457777777777777666554432211 10 11111112111110
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 255 ECFHKLQAIVPSM---PEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 255 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
.....+|.. ..+.+.+|.-|...+|++.|+--|.+ +...
T Consensus 113 ----Ni~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnR-an~r 154 (449)
T COG3014 113 ----NVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNR-ANER 154 (449)
T ss_pred ----chhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHH-HHHH
Confidence 111112211 12445667778888888888888888 6543
No 440
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=64.40 E-value=22 Score=19.43 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
|..+..++.+.|+++.|...|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444455555555555555555443
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.48 E-value=67 Score=24.81 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863 252 DSLECFHKLQAI--VPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296 (425)
Q Consensus 252 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~ 296 (425)
++.+.|..+... ....+..|...|..+...|++++|...|+. ++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~-Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL-GI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-hC
Confidence 777777776654 345677788888888888888888888877 53
No 442
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.02 E-value=59 Score=25.38 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=18.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA 212 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (425)
..+.....+.+++..+..++.++.....+..+|..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34555556666665555555455555555555543
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.99 E-value=48 Score=22.95 Aligned_cols=7 Identities=14% Similarity=-0.031 Sum_probs=2.9
Q ss_pred hcCcCcH
Q psy1863 228 DNDATCI 234 (425)
Q Consensus 228 ~~~~~~~ 234 (425)
...|+.+
T Consensus 41 ~~~pD~~ 47 (75)
T cd02682 41 KNYPDSP 47 (75)
T ss_pred HhCCChH
Confidence 3344443
No 444
>KOG4279|consensus
Probab=62.91 E-value=55 Score=33.41 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHhhcCCch
Q psy1863 311 MKHEAEKCILTSAKLIAPSI 330 (425)
Q Consensus 311 ~~~~A~~~~~~a~~~~~~~~ 330 (425)
++.+|+..-+..+++.|...
T Consensus 381 d~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 381 DYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred CHHHHHHHHHHHhccCCcee
Confidence 66666666666666666543
No 445
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.71 E-value=72 Score=24.87 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=68.3
Q ss_pred HHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG 219 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 219 (425)
..+...+.....+.+++.++ +.++..+..+..+|... +..+.+.++.. .....+. -..+....+.+-++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~---~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDI---EKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCH---HHHHHHHHHcCcHHHH
Confidence 34455688999999999888 56677888888888764 45566666663 1111111 1233344555666666
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 220 KELYVHALDNDATCIEALYNLGLAHK-HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
...+.+. .....+. .++. ..++++.|++++.+ +.++..|..++..+.
T Consensus 89 ~~l~~k~----~~~~~Al----~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKD----GNFKDAI----VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHhh----cCHHHHH----HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666553 1112121 1122 22677777777765 346677777665544
No 446
>KOG1463|consensus
Probab=61.04 E-value=1.4e+02 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhccccHHHHHHH
Q psy1863 5 EEKFERMEQEIIGLIDESCICARNQDFKAALEK 37 (425)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 37 (425)
+..+++-| ..+++.+..+.+.|+..+=.+.
T Consensus 41 e~~i~~kE---~~Ilel~~ll~~~~~~~~lr~l 70 (411)
T KOG1463|consen 41 EARIKEKE---QSILELGDLLAKEGDAEELRDL 70 (411)
T ss_pred HHHHHHHH---HHHHHHHHHHHhccchhHHHHH
Confidence 34444444 4567777888888888775543
No 447
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.74 E-value=1.4e+02 Score=27.54 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=97.4
Q ss_pred HHHHHHHHhcc---cchHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHhcC-CCCHH
Q psy1863 152 SQAVDVLKSCD---EMTSSAATNLSFIYFLQ--------------------------GEVEQAEKMAEEACTAD-TYNSA 201 (425)
Q Consensus 152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~~--------------------------g~~~~A~~~~~~al~~~-p~~~~ 201 (425)
++|+.+-.-.. |..|+++-.++.+.+.. +-.+++.....+++... |.-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 45555433332 88888888777776652 22467777888887665 33333
Q ss_pred HHHHHHHHHHH-----hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q psy1863 202 AFVNLGNCAMA-----REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI--VPSMPEVLYQI 274 (425)
Q Consensus 202 ~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 274 (425)
..-.++.++.. .-+|..-..+|.-.....|+ +.+-.|.+.+.....-.+.++...+-.... -......+...
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~R 371 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAAR 371 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHH
Confidence 33444444433 23566666667666666665 555566666666666667777776655443 22344566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|.++.++|+.++|...|++ ++.+.++..
T Consensus 372 adlL~rLgr~~eAr~aydr-Ai~La~~~a 399 (415)
T COG4941 372 ADLLARLGRVEEARAAYDR-AIALARNAA 399 (415)
T ss_pred HHHHHHhCChHHHHHHHHH-HHHhcCChH
Confidence 8999999999999999999 998877665
No 448
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=60.28 E-value=90 Score=25.20 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc----------c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD----------E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACT 194 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~----------~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 194 (425)
+..+...++.|+...|.+.++.+- | .........+..+...|++.+|...+..++.
T Consensus 79 i~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 79 IKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 566888999999999999998875 2 2334556778888889999999988888764
No 449
>KOG4322|consensus
Probab=59.77 E-value=38 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASN 43 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~ 43 (425)
++.+|+.+...|.+++.+.++.+|...+.+..-
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~v 301 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMV 301 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888889888888888888766543
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.14 E-value=82 Score=24.35 Aligned_cols=43 Identities=5% Similarity=0.016 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 218 KGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 218 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
++...|..+... ....+..|...|..+...|++++|.+.|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 555555555443 3345666666666666666666666666654
No 451
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.87 E-value=73 Score=24.50 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHA 226 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~a 226 (425)
...+||..+..+|+.+=.+++++-|
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4667777777777777777776544
No 452
>KOG0687|consensus
Probab=58.78 E-value=1.5e+02 Score=27.23 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTS---SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SA 201 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 201 (425)
..+..+.+|..|.+-||-+.|.+.+.+.. .... -....+|..|....-..+.++..+..++...+- -.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 45667899999999999999999988876 2222 334456666665544444444444444443221 12
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
.-..-|...+...++.+|-..|-.++....+
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 2333466667788999999999988876543
No 453
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=58.03 E-value=3.3 Score=41.05 Aligned_cols=96 Identities=15% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCC-CHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEA--CTADTY-NSAAFV 204 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~~~ 204 (425)
.....+.-+..++..|++..|..++.+.. ..........|.+....|++++|+..+... ..+.+. ....+.
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~ 102 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQ 102 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHH
Confidence 45556777889999999999999998876 333455667788899999999999998751 111111 223455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
..+.++...|++-+|...+-..-.+
T Consensus 103 l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 103 LRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp -------------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 6788888888888887765544433
No 454
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=57.75 E-value=1.4e+02 Score=26.75 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=64.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHH---HHcCCHH----HHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIY---FLQGEVE----QAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~---~~~g~~~----~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
...++..++|++=...+.+.. ....+..+..+... +...... .-...++.=++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677788887777777665 01111112222211 1111111 23445555566677777777777666
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (425)
+....=--.....- +.....-|..... -.+.|...+.+++.++|....++..+-.+-...|.+.
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 55432100000000 0011122211111 2366777777777777777777766666666666554
No 455
>KOG0292|consensus
Probab=56.23 E-value=1.5e+02 Score=31.11 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
.+..|..+...|+|.+|++.|+.++
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii 1018 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSII 1018 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHH
Confidence 4677888899999999999999887
No 456
>PRK12798 chemotaxis protein; Reviewed
Probab=55.54 E-value=1.9e+02 Score=27.53 Aligned_cols=162 Identities=16% Similarity=0.001 Sum_probs=112.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLS-FIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNC 209 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 209 (425)
.+..|..-+-.|+-.++.+.+..+. |...-.+..|. -......+..+|+..|+.+--..|... .++..-..+
T Consensus 115 ~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~l 194 (421)
T PRK12798 115 RLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFI 194 (421)
T ss_pred HHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHH
Confidence 3566778888999999999988877 33333344333 334556789999999999998999875 344444555
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-CCHHHHHHHHHHHHHcCCH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEA---LYNLGLAHKHLNEYSDSLECFHKLQAI-VP-SMPEVLYQIASLYEITGDV 284 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~~~~~~~~la~~~~~~g~~ 284 (425)
....|+.+++..+-.+.+.....++.+ +........+.++-. -...+...+.. +| .....|..++..-...|+.
T Consensus 195 a~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~ 273 (421)
T PRK12798 195 AAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKT 273 (421)
T ss_pred HHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcH
Confidence 678899999999988888887665443 334444444443221 22335555554 33 2456888899988999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q psy1863 285 EQASDVNENLLLEAVRN 301 (425)
Q Consensus 285 ~~A~~~~~~~a~~~~p~ 301 (425)
+-|...-.+ +..+...
T Consensus 274 ~lA~~As~~-A~~L~~~ 289 (421)
T PRK12798 274 ELARFASER-ALKLADP 289 (421)
T ss_pred HHHHHHHHH-HHHhccC
Confidence 999999999 8887533
No 457
>KOG4521|consensus
Probab=55.34 E-value=3.2e+02 Score=29.96 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=47.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDA----TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP---EVLYQIASLYE 279 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~ 279 (425)
-..+..-+-.+.+++...+|++.-| +.+..+..+-.-+..+|.+-+|.... -.+|+.. ..+..+..++.
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHH
Confidence 3445556777788888888887643 33445556666667788888876543 3456532 35666777777
Q ss_pred HcCCHH
Q psy1863 280 ITGDVE 285 (425)
Q Consensus 280 ~~g~~~ 285 (425)
..|.++
T Consensus 1066 ecg~l~ 1071 (1480)
T KOG4521|consen 1066 ECGELE 1071 (1480)
T ss_pred hccchH
Confidence 766554
No 458
>KOG4151|consensus
Probab=55.06 E-value=49 Score=33.80 Aligned_cols=105 Identities=13% Similarity=0.002 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---c----chHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---E----MTSSAATNLSFIYFL--QGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~----~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
..-+..++..+++..+.--|..++ | .......+.+.++.. .|++..++.-..-++...|....++...+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 345888999999999865555554 3 334455667777655 5789999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
|...++++-|++...-....+|++..+..-....
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 9999999999999888888899986554433333
No 459
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.53 E-value=26 Score=24.53 Aligned_cols=17 Identities=35% Similarity=0.149 Sum_probs=10.8
Q ss_pred HcCCHHHHHHHHHHHHHh
Q psy1863 280 ITGDVEQASDVNENLLLE 297 (425)
Q Consensus 280 ~~g~~~~A~~~~~~~a~~ 297 (425)
..|+.++|+.+|++ ++.
T Consensus 20 E~g~~e~Al~~Y~~-gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRK-GLR 36 (79)
T ss_pred hcCCHHHHHHHHHH-HHH
Confidence 34677777777777 443
No 460
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=54.32 E-value=56 Score=28.89 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHH
Q psy1863 5 EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQ 52 (425)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~ 52 (425)
.+++..++++|..++.++-.+-..|+.++|.....++..+........
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le 169 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELE 169 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999888776555543
No 461
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=53.20 E-value=32 Score=19.27 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhcCcC
Q psy1863 216 YVKGKELYVHALDNDAT 232 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~ 232 (425)
++.|..+|++.+..+|+
T Consensus 3 ~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE 19 (32)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 45555555555555544
No 462
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.14 E-value=2.2e+02 Score=27.40 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=25.2
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+.+.++.|..+...|+|++|++.|+..+-.-
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4567888999999999999999998876544
No 463
>KOG2561|consensus
Probab=53.04 E-value=2.2e+02 Score=27.36 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=65.3
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHH-HHhhCCCcccccchhcc--hhhhhcchhhcccchhHHHHHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKL-QEQFGHADSHNIELTFS--NINRKKNARAVRNDALSQLHREM 91 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~d~l~~~~~~~ 91 (425)
-..+.+.|..+.....|++|+..+-+|-+.-...... .+.-.--+..+++++|. -+..+. .+ .
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknit---cL-----~------ 228 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNIT---CL-----P------ 228 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccc---cC-----C------
Confidence 3567888999999999999999988886655332221 11112233456665554 211111 11 1
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 92 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS--LAQDLEINKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
.++.-+..+.+-+...-..+ +..+. .++....+. +-..+++..|.+.+.+|+-++|.++++.+.
T Consensus 229 --DAe~RL~ra~kgf~~syGen----l~Rl~-~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 229 --DAEVRLVRARKGFERSYGEN----LSRLR-SLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred --hHHHHHHHHHHhhhhhhhhh----hHhhh-hccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11111111111110000000 00000 112111222 235566788999999999999999998876
No 464
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.34 E-value=39 Score=18.67 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHH
Q psy1863 168 AATNLSFIYFLQ----GEVEQAEKMAEEAC 193 (425)
Q Consensus 168 ~~~~lg~~~~~~----g~~~~A~~~~~~al 193 (425)
+.+.+|.+|..- .+..+|+.+++++.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 344455554331 24455555555544
No 465
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.88 E-value=2e+02 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++.+-+..|..+.-.|++.++...+.. +.-+.|+..
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e-~~gi~qd~~ 247 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNE-AYGISQDQS 247 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHH-HhccCchhh
Confidence 555666667777777788888888888 777776644
No 466
>KOG0796|consensus
Probab=51.52 E-value=40 Score=30.45 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHH
Q psy1863 5 EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKER 46 (425)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 46 (425)
..++..++++|..+++++-.+-..|+.++|...+.++..+..
T Consensus 121 ~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 121 AEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999998887763
No 467
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.29 E-value=2.3e+02 Score=26.83 Aligned_cols=54 Identities=17% Similarity=0.001 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc--c------chHHHHHH--HHHHHHHcCCHHHHHHHHHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD--E------MTSSAATN--LSFIYFLQGEVEQAEKMAEE 191 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~--~------~~~~~~~~--lg~~~~~~g~~~~A~~~~~~ 191 (425)
....+..+++.++|..|...|.++. . .....+.. .|..++..-++++|.+.+++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3456778899999999999999888 1 11223333 34455778889999999885
No 468
>KOG0889|consensus
Probab=50.10 E-value=6.1e+02 Score=31.73 Aligned_cols=102 Identities=7% Similarity=-0.055 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhcCcchH-H
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT----GD----VEQASDVNENLLLEAVRNDA-L 304 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~----~~~A~~~~~~~a~~~~p~~~-~ 304 (425)
+..+...|....+.|+.++|-..|..|++++...+.+|..-|...... +. -..|+.+|-+ |.....+.. .
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLq-A~~~~~~skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQ-AARLYNSSKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHH-HhccccchhhH
Confidence 556777899999999999999999999999988888998888765432 22 2456777777 766654444 3
Q ss_pred HHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863 305 SQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSN 336 (425)
Q Consensus 305 ~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~ 336 (425)
..++.+ ..+.|.....++++..-..+..+.+.
T Consensus 2891 k~iakvLwLls~dda~~~l~~~~~k~l~~ip~~~wl 2926 (3550)
T KOG0889|consen 2891 KLIAKVLWLLSFDDSLGTLGDVFDKFLGEIPVWNWL 2926 (3550)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhhccCCchhhh
Confidence 334443 66666655555555555555544444
No 469
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=49.78 E-value=52 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTY 198 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 198 (425)
.+|..+...|++++|..+|-+|+...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555443
No 470
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=49.23 E-value=47 Score=18.78 Aligned_cols=12 Identities=42% Similarity=0.285 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy1863 182 VEQAEKMAEEAC 193 (425)
Q Consensus 182 ~~~A~~~~~~al 193 (425)
+++|+.+|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 444555554443
No 471
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=48.74 E-value=2.2e+02 Score=26.22 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=55.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
...|+...|.+.-.+. + -.....|.....++...++|++=..+... ...|-.|.-...++...|+..+|..+
T Consensus 188 i~~~~~k~A~kl~k~F-k--v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 188 IEMGQEKQAEKLKKEF-K--VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHCCCHHHHHHHHHHc-C--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 4456666665553332 2 22445566666777777777765543321 12344455555666677777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
..+ -|+ ......|...|++.+|.+...+
T Consensus 260 I~k----~~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 260 IPK----IPD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHh----CCh-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 766 111 3445566677777777655333
No 472
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.31 E-value=1.1e+02 Score=22.90 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
..-|.+.+..||+..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344555555666666666666665443333333333333333333
No 473
>KOG4521|consensus
Probab=47.78 E-value=4.2e+02 Score=29.13 Aligned_cols=159 Identities=9% Similarity=0.046 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc--c--------------------------chH----HHHHHHHHHHHHcCCHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD--E--------------------------MTS----SAATNLSFIYFLQGEVE 183 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~--~--------------------------~~~----~~~~~lg~~~~~~g~~~ 183 (425)
-..+.+|.+|+..|+..+|+.+|.++. . ..+ ..|...-.++..-+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 345778999999999999999999987 0 011 11222233444456666
Q ss_pred HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHH--
Q psy1863 184 QAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSL-- 254 (425)
Q Consensus 184 ~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~-- 254 (425)
.++....+|++.-|++ +.....+-+-+..+|.+-+|.+. +-.+|+. -..+..+-.+++..|+.+.-.
T Consensus 1001 ~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 6777777777654333 34455566666778888887653 3345553 346677788888887765322
Q ss_pred ----------H-HHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHH-HHHHHHHhcC
Q psy1863 255 ----------E-CFHKLQAIVPSMPE-VLYQIASLYEITGDVEQASD-VNENLLLEAV 299 (425)
Q Consensus 255 ----------~-~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~-~~~~~a~~~~ 299 (425)
. .++.+-+..|.... .|..|--.+...+++.+|-. +|+- +..+.
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEy-amrl~ 1133 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEY-AMRLE 1133 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHH-HHHhc
Confidence 2 33444444443333 34444445567788877654 4555 65553
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.31 E-value=48 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=5.3
Q ss_pred cCCHHHHHHHHHH
Q psy1863 179 QGEVEQAEKMAEE 191 (425)
Q Consensus 179 ~g~~~~A~~~~~~ 191 (425)
.|++++|+.+|.+
T Consensus 18 ~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 18 AGNYEEALELYKE 30 (69)
T ss_dssp TTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3444444444433
No 475
>KOG1920|consensus
Probab=45.80 E-value=4.5e+02 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863 360 NKAVTFLRMNDVSQAVDVLKSCDE 383 (425)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~~~~ 383 (425)
.+-.++...|..++|.++-+.+..
T Consensus 1189 ~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1189 RLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 366777888888888887776643
No 476
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.88 E-value=1.3e+02 Score=22.54 Aligned_cols=83 Identities=7% Similarity=-0.124 Sum_probs=42.3
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNE 292 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (425)
....++|..+.+=.-........+..-....+.+.|+|++|+ . +......++.---++.+-.+.|-.+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l--~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---L--LPQCHCYPDLEPWAALCAWKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---H--HHTTS--GGGHHHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---H--hcccCCCccHHHHHHHHHHhhccHHHHHHHHH
Confidence 344566655554333333323334444556677788888872 1 12233445555556666777888887777777
Q ss_pred HHHHhcCc
Q psy1863 293 NLLLEAVR 300 (425)
Q Consensus 293 ~~a~~~~p 300 (425)
+++..-+|
T Consensus 94 rla~~g~~ 101 (116)
T PF09477_consen 94 RLASSGSP 101 (116)
T ss_dssp HHCT-SSH
T ss_pred HHHhCCCH
Confidence 52333333
No 477
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=44.73 E-value=36 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.++..-+|......|+|++|.++.++|-+.-
T Consensus 20 Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l 50 (104)
T PRK09591 20 ARTEVHEAFAAMREGNFDLAEQKLNQSNEEL 50 (104)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4556667888888999999999999887644
No 478
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.61 E-value=1.9e+02 Score=24.33 Aligned_cols=46 Identities=30% Similarity=0.349 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHH
Q psy1863 6 EKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKL 51 (425)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~ 51 (425)
+++=++-.+|..+...++....+|++++|...+++|.+.-..|.+.
T Consensus 20 EE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~ 65 (204)
T COG2178 20 EEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRL 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788999999999999999999999999988776666543
No 479
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=44.29 E-value=2.4e+02 Score=25.35 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (425)
|.+..++..+|..+... |-..... ...-|... ..-.+.|...+.+++.++|....+
T Consensus 74 P~Sy~A~La~g~~~~~~------------Aw~~RG~~~A~~V~~~~W~~~------~~~~d~A~~~ll~A~~l~pr~~~A 135 (277)
T PF13226_consen 74 PKSYHAHLAMGMYWVHR------------AWDIRGSGYASTVTEAQWLGA------HQACDQAVAALLKAIELSPRPVAA 135 (277)
T ss_pred CCChHHHHHHHHHHHHH------------HHHHHccchhcccCHHHHHHH------HHHHHHHHHHHHHHHhcCCCchHH
Confidence 88889999888887652 2222111 11222221 122467888899999999998888
Q ss_pred HHHHHHHHHHcCCHH
Q psy1863 237 LYNLGLAHKHLNEYS 251 (425)
Q Consensus 237 ~~~la~~~~~~g~~~ 251 (425)
...+-.+-...|..+
T Consensus 136 ~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 136 AIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHhhcCCch
Confidence 887777777777665
No 480
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=44.21 E-value=54 Score=30.78 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 259 (425)
+..-+|+.+++.++...|.+......+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456677777888888888888888888888888888888877754
No 481
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=43.36 E-value=40 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.++..-+|.....+|+|++|.++.++|-+.-
T Consensus 15 Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l 45 (97)
T cd00215 15 ARSKALEALKAAKEGDFAEAEELLEEANDSL 45 (97)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999886644
No 482
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=42.23 E-value=3.2e+02 Score=26.23 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 361 KAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 361 la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
-|.-|.+.|+...|+.+|..+.....
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999965443
No 483
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=42.23 E-value=97 Score=25.14 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHH
Q psy1863 5 EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKL 51 (425)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~ 51 (425)
+..+++++.++..+...+..+...|+-..|+-++++...++..+.+.
T Consensus 14 ~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~ 60 (171)
T PF03357_consen 14 EKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKL 60 (171)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999998887777655553
No 484
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=41.85 E-value=43 Score=24.65 Aligned_cols=31 Identities=19% Similarity=-0.004 Sum_probs=24.8
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+++.-+|......|+|++|.++.++|-+.-
T Consensus 17 Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l 47 (99)
T TIGR00823 17 ARSKALEALKAAKAGDFAKARALVEQAGMCL 47 (99)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4556677888889999999999998886544
No 485
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=41.25 E-value=73 Score=24.46 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=12.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
+|..+...|++++|..+|-+|+...|+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444443
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.81 E-value=1.4e+02 Score=23.17 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=35.0
Q ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 230 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+|....+|...+... +++.+.|..+.+..- ..+..|...|..+...|++.+|...|+.
T Consensus 65 D~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 334445555555432 335556665554433 3445566777778888888888887764
No 487
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.40 E-value=67 Score=22.29 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=6.0
Q ss_pred hcCHHHHHHHHHHHH
Q psy1863 213 REDYVKGKELYVHAL 227 (425)
Q Consensus 213 ~g~~~~A~~~~~~al 227 (425)
.|+|++|+.+|..++
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (76)
T cd02681 19 EGRYSEAVFYYKEAA 33 (76)
T ss_pred ccCHHHHHHHHHHHH
Confidence 344444444444433
No 488
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.23 E-value=3.6e+02 Score=27.13 Aligned_cols=77 Identities=16% Similarity=0.026 Sum_probs=57.1
Q ss_pred HHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863 146 LRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL 222 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 222 (425)
.+....+.+....+.-+ ...+.....-+..+-..|..++|-.+|++.+..+|+ ..++..+..+.+.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34556677777776666 344555666777778888888888888888888887 5677777888888888888777
Q ss_pred HH
Q psy1863 223 YV 224 (425)
Q Consensus 223 ~~ 224 (425)
+.
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 76
No 489
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.47 E-value=74 Score=22.12 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=7.9
Q ss_pred HhcCHHHHHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHAL 227 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al 227 (425)
..|++++|+.+|.+++
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555544444
No 490
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.46 E-value=1.4e+02 Score=22.00 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (425)
+-.|-.+..||.+|...|+.+.|..-|+.--.+.|.+...
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 4556677788888888888888888888877777776544
No 491
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.40 E-value=2.8e+02 Score=27.93 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=59.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 257 (425)
+....+.+....+.-+.-...+....+..+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-..+|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3445566666666555444555566777788888888899999999999998888 66778888888888888888887
Q ss_pred H
Q psy1863 258 H 258 (425)
Q Consensus 258 ~ 258 (425)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 492
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=38.87 E-value=53 Score=24.00 Aligned_cols=31 Identities=32% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+++.-.|......|+|++|.+++++|-+.-
T Consensus 14 Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l 44 (96)
T PF02255_consen 14 ARSLAMEALKAAREGDFEEAEELLKEADEEL 44 (96)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4667778888899999999999998886544
No 493
>KOG1497|consensus
Probab=38.80 E-value=3.1e+02 Score=25.16 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHH--hcCcCcHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--------NSAAFVNLGNCAMAREDYVKGKELYVHAL--DNDATCIE 235 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~ 235 (425)
......||.+|...++|..|...+.- +..+.. ....+..+|..|...++..+|..+..++- ..+..+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 45667899999999999999877653 333321 12347888999999999999988887764 23445555
Q ss_pred HHHHHHHHH----HHcCCHHHHHHHHHHHH
Q psy1863 236 ALYNLGLAH----KHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 236 ~~~~la~~~----~~~g~~~~A~~~~~~al 261 (425)
....+-.|| -..++|=+|-..|.+..
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444 34566666666665544
No 494
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.34 E-value=1e+02 Score=30.42 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 270 VLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
.|..+|..+++.+++.+|+..+.+
T Consensus 320 PYty~gg~~yR~~~~~eA~~~Wa~ 343 (618)
T PF05053_consen 320 PYTYLGGYYYRHKRYREALRSWAE 343 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cceehhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 495
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=38.32 E-value=50 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+++.-+|......|+|++|.++.++|-+.-
T Consensus 32 rS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l 61 (115)
T PRK10454 32 RSLAYAALKQAKQGDFAAAKAMMDQSRMAL 61 (115)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345556777788999999999998886543
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.23 E-value=33 Score=29.68 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=18.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 280 ITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 280 ~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..++...|..++++ |+.++|.-.
T Consensus 190 d~~~l~~Al~~L~r-A~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQR-AFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHH-HHHhCCCCC
Confidence 34677889999999 999888755
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=37.58 E-value=64 Score=30.33 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhh
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLN------------EYSDSLECFHKLQAI 263 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~ 263 (425)
...|++++++|..- +.|.+|.++|.++..+| -|.+|...+.+|-..
T Consensus 334 ~~~Al~yL~kA~d~--ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQDE--DDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc--CChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666542 33445555555444443 255666666666544
No 498
>KOG2280|consensus
Probab=37.06 E-value=5e+02 Score=26.96 Aligned_cols=101 Identities=8% Similarity=-0.018 Sum_probs=60.4
Q ss_pred HHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy1863 143 VTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE 221 (425)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 221 (425)
..+...|+..+|.++-.++- |+. ..|..-...+...+++++-.++.+. .. .|..+.-.-....+.|+.++|.+
T Consensus 692 ~~li~~g~~k~a~ql~~~FkipdK-r~~wLk~~aLa~~~kweeLekfAks---kk--sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKIPDK-RLWWLKLTALADIKKWEELEKFAKS---KK--SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHccchHHHHHHHHhcCCcch-hhHHHHHHHHHhhhhHHHHHHHHhc---cC--CCCCchhHHHHHHhcccHHHHhh
Confidence 44566778888888777776 444 3333444555666777655444332 11 13333344455677788888877
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 222 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 257 (425)
++-++-.+ . ....+|.+.|++.+|.+.-
T Consensus 766 Yiprv~~l----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGGL----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCCh----H----HHHHHHHHhccHHHHHHHH
Confidence 76654221 1 5667777778888777654
No 499
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.93 E-value=3.2e+02 Score=24.73 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcC-CC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcC
Q psy1863 181 EVEQAEKMAEEACTAD-TY-----NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLN 248 (425)
Q Consensus 181 ~~~~A~~~~~~al~~~-p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g 248 (425)
.-++-++-+.+.++.. .+ ...++.++|..|.+.++.+.+.+.+.+.++..-.. .-....+|.+|..+.
T Consensus 90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence 3344555554444322 22 24667788888888888887777777766543221 223346677776666
Q ss_pred CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCc
Q psy1863 249 EYSDSLECFHKLQAIVPSMPE---VLYQIASLYEITGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p 300 (425)
-.++.++..+..++...+... .-...|...+...++.+|...+.. .+....
T Consensus 170 vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d-~l~tF~ 223 (412)
T COG5187 170 VVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD-ILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH-Hhcccc
Confidence 666667666666666543221 222334445555677777766666 554433
No 500
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.49 E-value=1.8e+02 Score=21.66 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 248 (425)
-|.+....|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3445566777777777777776665444444444454444444
Done!