Query psy1863
Match_columns 425
No_of_seqs 669 out of 4805
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 18:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2E-32 6.8E-37 258.7 31.6 349 18-422 2-369 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2E-30 6.9E-35 244.9 31.3 321 16-389 34-373 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 3E-27 1E-31 219.7 35.5 299 14-390 2-341 (359)
4 2y4t_A DNAJ homolog subfamily 100.0 6.8E-27 2.3E-31 224.8 34.2 305 9-391 20-365 (450)
5 3ieg_A DNAJ homolog subfamily 100.0 1.9E-26 6.6E-31 214.2 33.4 286 135-424 3-338 (359)
6 2gw1_A Mitochondrial precursor 100.0 4E-27 1.4E-31 230.1 26.9 261 135-397 186-491 (514)
7 3hym_B Cell division cycle pro 100.0 1.4E-26 4.9E-31 212.8 28.9 225 140-390 61-305 (330)
8 3fp2_A TPR repeat-containing p 100.0 5.9E-27 2E-31 230.4 27.2 249 148-398 215-505 (537)
9 2xpi_A Anaphase-promoting comp 100.0 6.2E-26 2.1E-30 226.2 34.4 356 14-388 199-583 (597)
10 4g1t_A Interferon-induced prot 100.0 1.9E-26 6.6E-31 223.2 29.7 349 20-393 56-468 (472)
11 2xpi_A Anaphase-promoting comp 100.0 2.4E-25 8.3E-30 221.9 37.8 274 147-424 284-582 (597)
12 2y4t_A DNAJ homolog subfamily 100.0 6.9E-26 2.4E-30 217.8 31.5 288 132-423 23-360 (450)
13 3fp2_A TPR repeat-containing p 100.0 7.5E-26 2.6E-30 222.5 31.4 217 135-353 243-485 (537)
14 4eqf_A PEX5-related protein; a 100.0 1.3E-26 4.5E-31 216.8 23.7 228 135-388 65-314 (365)
15 2gw1_A Mitochondrial precursor 100.0 3E-26 1E-30 223.9 26.4 390 13-423 4-480 (514)
16 3hym_B Cell division cycle pro 99.9 8.6E-26 2.9E-30 207.6 25.9 269 135-423 22-301 (330)
17 4eqf_A PEX5-related protein; a 99.9 5.5E-26 1.9E-30 212.6 24.1 233 135-381 99-353 (365)
18 2pl2_A Hypothetical conserved 99.9 1.3E-25 4.3E-30 194.4 23.9 187 135-323 5-212 (217)
19 2pl2_A Hypothetical conserved 99.9 1.3E-25 4.5E-30 194.3 23.2 192 163-381 2-211 (217)
20 2h6f_A Protein farnesyltransfe 99.9 1.2E-25 4.1E-30 210.3 24.3 230 133-389 95-353 (382)
21 1fch_A Peroxisomal targeting s 99.9 4.6E-25 1.6E-29 206.2 27.2 262 135-423 64-361 (368)
22 1fch_A Peroxisomal targeting s 99.9 1.2E-25 4E-30 210.3 23.0 232 135-382 98-357 (368)
23 3u4t_A TPR repeat-containing p 99.9 4.5E-25 1.6E-29 197.4 22.3 241 136-395 4-261 (272)
24 3cv0_A Peroxisome targeting si 99.9 7E-25 2.4E-29 201.2 24.1 264 134-423 20-317 (327)
25 3cv0_A Peroxisome targeting si 99.9 1E-24 3.5E-29 200.1 24.2 232 139-384 59-315 (327)
26 3vtx_A MAMA; tetratricopeptide 99.9 2E-24 6.9E-29 181.6 23.5 169 135-304 5-176 (184)
27 4g1t_A Interferon-induced prot 99.9 4.5E-24 1.6E-28 206.5 29.0 288 135-423 94-461 (472)
28 2h6f_A Protein farnesyltransfe 99.9 3.5E-24 1.2E-28 200.3 23.3 199 137-337 133-360 (382)
29 3uq3_A Heat shock protein STI1 99.9 3.3E-23 1.1E-27 183.3 24.1 217 135-385 5-237 (258)
30 3u4t_A TPR repeat-containing p 99.9 1.3E-23 4.4E-28 187.9 21.3 239 15-303 3-255 (272)
31 3vtx_A MAMA; tetratricopeptide 99.9 2.7E-23 9.3E-28 174.7 22.0 167 164-331 3-176 (184)
32 2q7f_A YRRB protein; TPR, prot 99.9 3.8E-23 1.3E-27 181.4 21.1 207 130-337 18-234 (243)
33 3uq3_A Heat shock protein STI1 99.9 5.1E-22 1.8E-26 175.6 27.9 179 139-326 42-237 (258)
34 2ho1_A Type 4 fimbrial biogene 99.9 6.5E-22 2.2E-26 174.7 26.3 199 134-333 36-246 (252)
35 2vq2_A PILW, putative fimbrial 99.9 1.4E-21 4.6E-26 169.1 27.8 200 133-333 6-219 (225)
36 4i17_A Hypothetical protein; T 99.9 1.3E-21 4.3E-26 170.4 26.5 201 164-392 5-217 (228)
37 4a1s_A PINS, partner of inscut 99.9 2.3E-22 7.9E-27 190.9 23.2 274 12-387 45-375 (411)
38 4i17_A Hypothetical protein; T 99.9 2E-22 7E-27 175.5 20.9 196 135-336 7-220 (228)
39 4gyw_A UDP-N-acetylglucosamine 99.9 1E-22 3.5E-27 204.8 21.5 169 133-302 7-178 (723)
40 3sf4_A G-protein-signaling mod 99.9 3.9E-22 1.3E-26 188.5 24.5 229 138-386 50-338 (406)
41 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.7E-22 3E-26 176.0 24.8 226 144-392 14-252 (275)
42 3ro2_A PINS homolog, G-protein 99.9 3.9E-22 1.3E-26 183.1 22.7 230 138-387 46-335 (338)
43 4gyw_A UDP-N-acetylglucosamine 99.9 1.4E-22 4.7E-27 203.8 20.8 167 163-330 6-179 (723)
44 3mkr_A Coatomer subunit epsilo 99.9 1.3E-21 4.4E-26 176.9 25.1 166 135-303 101-269 (291)
45 1ouv_A Conserved hypothetical 99.9 1.4E-20 4.8E-25 168.5 29.4 218 135-386 6-253 (273)
46 2q7f_A YRRB protein; TPR, prot 99.9 1.1E-21 3.6E-26 172.1 21.6 202 163-390 20-228 (243)
47 3mkr_A Coatomer subunit epsilo 99.9 1.4E-20 4.8E-25 170.1 29.4 243 118-391 15-271 (291)
48 2vq2_A PILW, putative fimbrial 99.9 9E-21 3.1E-25 163.9 26.7 201 163-389 5-216 (225)
49 3ulq_A Response regulator aspa 99.9 1.9E-20 6.4E-25 176.3 30.7 224 137-387 105-371 (383)
50 2ho1_A Type 4 fimbrial biogene 99.9 5E-21 1.7E-25 169.0 24.5 202 163-390 33-244 (252)
51 4abn_A Tetratricopeptide repea 99.9 7.7E-22 2.6E-26 190.9 20.4 205 150-381 83-318 (474)
52 4abn_A Tetratricopeptide repea 99.9 3.7E-21 1.3E-25 186.1 24.4 186 132-319 99-315 (474)
53 4a1s_A PINS, partner of inscut 99.9 8.7E-22 3E-26 186.9 19.5 269 135-423 48-374 (411)
54 3sf4_A G-protein-signaling mod 99.9 1.5E-21 5E-26 184.6 20.3 269 135-423 9-338 (406)
55 2xm6_A Protein corresponding t 99.9 3.2E-19 1.1E-23 173.5 36.5 353 15-398 39-446 (490)
56 3as5_A MAMA; tetratricopeptide 99.9 1.8E-20 6.3E-25 156.6 22.9 170 133-303 6-178 (186)
57 3urz_A Uncharacterized protein 99.9 7.1E-21 2.4E-25 163.3 20.1 173 136-310 5-199 (208)
58 4ga2_A E3 SUMO-protein ligase 99.9 6E-22 2.1E-26 160.6 12.4 143 141-283 3-149 (150)
59 3ro2_A PINS homolog, G-protein 99.9 3.7E-21 1.3E-25 176.5 18.7 267 137-423 7-334 (338)
60 2ond_A Cleavage stimulation fa 99.9 1.2E-19 4.3E-24 165.4 28.1 220 152-395 33-281 (308)
61 3q15_A PSP28, response regulat 99.9 1.7E-19 5.9E-24 169.4 29.1 221 137-384 103-365 (378)
62 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.5E-20 1.9E-24 164.2 24.5 215 133-378 41-269 (275)
63 3qky_A Outer membrane assembly 99.9 2.3E-20 7.7E-25 166.1 21.1 169 134-303 14-229 (261)
64 1ouv_A Conserved hypothetical 99.9 1.4E-18 4.9E-23 155.3 30.8 221 163-422 3-252 (273)
65 3nf1_A KLC 1, kinesin light ch 99.8 1.9E-20 6.6E-25 170.2 17.5 240 132-386 24-309 (311)
66 1qqe_A Vesicular transport pro 99.8 2.5E-20 8.7E-25 168.7 18.0 195 134-329 36-273 (292)
67 3urz_A Uncharacterized protein 99.8 6.7E-20 2.3E-24 157.2 19.6 165 165-330 3-191 (208)
68 4ga2_A E3 SUMO-protein ligase 99.8 2.6E-21 8.8E-26 156.9 9.3 132 171-303 2-134 (150)
69 3qky_A Outer membrane assembly 99.8 1.9E-19 6.5E-24 160.1 21.3 169 163-332 12-231 (261)
70 3ulq_A Response regulator aspa 99.8 3.5E-19 1.2E-23 167.6 24.3 190 137-328 145-371 (383)
71 4gco_A Protein STI-1; structur 99.8 1.5E-19 5.3E-24 141.6 16.2 116 163-278 10-125 (126)
72 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.9E-19 1.3E-23 154.4 20.5 167 135-302 4-217 (225)
73 3as5_A MAMA; tetratricopeptide 99.8 7.4E-19 2.5E-23 146.8 20.9 166 165-331 7-179 (186)
74 1qqe_A Vesicular transport pro 99.8 5.8E-19 2E-23 159.7 21.2 169 134-303 76-274 (292)
75 2xm6_A Protein corresponding t 99.8 2.3E-17 7.8E-22 160.4 33.7 292 112-422 93-433 (490)
76 2ond_A Cleavage stimulation fa 99.8 2.1E-18 7E-23 157.3 23.7 197 134-331 49-276 (308)
77 2ooe_A Cleavage stimulation fa 99.8 7.2E-18 2.5E-22 165.6 28.7 212 184-423 256-494 (530)
78 3nf1_A KLC 1, kinesin light ch 99.8 1E-18 3.4E-23 158.8 20.9 173 13-263 25-224 (311)
79 3e4b_A ALGK; tetratricopeptide 99.8 6.2E-18 2.1E-22 162.4 26.8 312 19-383 7-386 (452)
80 4gco_A Protein STI-1; structur 99.8 3.9E-19 1.3E-23 139.3 14.7 118 191-309 4-123 (126)
81 2pzi_A Probable serine/threoni 99.8 3E-19 1E-23 180.2 17.7 163 146-310 402-577 (681)
82 3edt_B KLC 2, kinesin light ch 99.8 1.7E-19 5.9E-24 161.3 14.1 217 147-383 13-280 (283)
83 3gyz_A Chaperone protein IPGC; 99.8 9.2E-20 3.1E-24 147.2 9.6 115 188-303 24-138 (151)
84 2r5s_A Uncharacterized protein 99.8 1.8E-18 6E-23 144.2 17.2 159 137-297 8-172 (176)
85 2pzi_A Probable serine/threoni 99.8 1.6E-18 5.5E-23 174.9 17.8 170 163-337 391-575 (681)
86 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.5E-18 1.9E-22 147.1 18.9 167 165-332 3-220 (225)
87 3edt_B KLC 2, kinesin light ch 99.8 3.8E-18 1.3E-22 152.5 18.4 129 135-263 43-198 (283)
88 3gyz_A Chaperone protein IPGC; 99.8 1.7E-18 5.7E-23 139.8 13.1 113 156-268 23-138 (151)
89 3q15_A PSP28, response regulat 99.8 1.5E-17 5E-22 156.2 21.5 239 19-298 105-365 (378)
90 2vsy_A XCC0866; transferase, g 99.8 8.1E-18 2.8E-22 166.7 19.2 160 148-308 2-169 (568)
91 3qou_A Protein YBBN; thioredox 99.8 1.1E-17 3.8E-22 150.8 17.4 163 134-297 116-283 (287)
92 1hz4_A MALT regulatory protein 99.8 4.9E-16 1.7E-20 145.4 28.6 228 139-386 57-324 (373)
93 1hz4_A MALT regulatory protein 99.8 5.5E-17 1.9E-21 151.8 21.1 268 134-423 13-324 (373)
94 2fo7_A Synthetic consensus TPR 99.8 7.4E-17 2.5E-21 126.9 18.5 135 167-302 2-136 (136)
95 3dra_A Protein farnesyltransfe 99.8 1.9E-16 6.4E-21 142.4 23.0 227 145-397 42-298 (306)
96 2ooe_A Cleavage stimulation fa 99.8 2.7E-16 9.3E-21 154.4 26.3 225 152-398 255-506 (530)
97 3qou_A Protein YBBN; thioredox 99.8 5.7E-17 2E-21 146.1 19.2 171 153-324 104-283 (287)
98 2vgx_A Chaperone SYCD; alterna 99.7 6.1E-18 2.1E-22 136.5 10.7 117 186-303 7-123 (148)
99 2r5s_A Uncharacterized protein 99.7 1.5E-17 5.1E-22 138.5 12.0 157 166-324 6-172 (176)
100 1p5q_A FKBP52, FK506-binding p 99.7 8.7E-18 3E-22 154.9 11.2 149 148-297 126-293 (336)
101 2vgx_A Chaperone SYCD; alterna 99.7 1.8E-17 6.2E-22 133.7 11.4 117 156-272 8-127 (148)
102 1hh8_A P67PHOX, NCF-2, neutrop 99.7 3.5E-16 1.2E-20 134.1 19.8 130 138-267 9-154 (213)
103 3upv_A Heat shock protein STI1 99.7 1.6E-16 5.5E-21 124.2 16.1 118 163-280 1-124 (126)
104 2vsy_A XCC0866; transferase, g 99.7 1.9E-16 6.4E-21 156.9 19.6 157 179-336 2-168 (568)
105 3rjv_A Putative SEL1 repeat pr 99.7 3.8E-16 1.3E-20 134.1 19.0 164 135-303 18-202 (212)
106 3e4b_A ALGK; tetratricopeptide 99.7 4E-15 1.4E-19 142.8 28.2 182 137-328 178-390 (452)
107 3dss_A Geranylgeranyl transfer 99.7 4.8E-15 1.7E-19 134.0 26.6 190 151-341 90-320 (331)
108 2xcb_A PCRH, regulatory protei 99.7 9.8E-17 3.4E-21 128.4 13.7 107 163-269 15-121 (142)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.7 4.7E-16 1.6E-20 133.3 18.2 134 166-303 6-155 (213)
110 1a17_A Serine/threonine protei 99.7 7.1E-16 2.4E-20 126.3 18.2 134 164-298 11-146 (166)
111 2xcb_A PCRH, regulatory protei 99.7 5.7E-17 2E-21 129.8 10.8 116 187-303 5-120 (142)
112 2ifu_A Gamma-SNAP; membrane fu 99.7 1.7E-16 5.8E-21 144.5 14.8 167 134-303 35-228 (307)
113 3dra_A Protein farnesyltransfe 99.7 4.4E-15 1.5E-19 133.5 23.6 200 135-335 67-298 (306)
114 2fo7_A Synthetic consensus TPR 99.7 1.5E-15 5.2E-20 119.3 17.7 130 137-266 3-135 (136)
115 3dss_A Geranylgeranyl transfer 99.7 1.8E-14 6.2E-19 130.2 26.8 219 145-386 39-306 (331)
116 1xi4_A Clathrin heavy chain; a 99.7 7.2E-14 2.5E-18 144.2 33.7 116 135-260 1105-1247(1630)
117 4gcn_A Protein STI-1; structur 99.7 7.2E-16 2.5E-20 120.8 14.9 108 164-272 6-120 (127)
118 2lni_A Stress-induced-phosphop 99.7 7.7E-16 2.6E-20 121.0 15.2 121 163-283 13-133 (133)
119 2vyi_A SGTA protein; chaperone 99.7 1.3E-15 4.4E-20 119.1 16.2 122 163-284 9-130 (131)
120 3sz7_A HSC70 cochaperone (SGT) 99.7 8.3E-16 2.8E-20 126.2 15.5 114 164-277 9-122 (164)
121 3rjv_A Putative SEL1 repeat pr 99.7 1.1E-15 3.8E-20 131.2 16.5 169 153-328 4-200 (212)
122 2ifu_A Gamma-SNAP; membrane fu 99.7 5.2E-16 1.8E-20 141.3 15.1 170 148-331 29-229 (307)
123 1p5q_A FKBP52, FK506-binding p 99.7 1.5E-17 5.1E-22 153.4 4.9 175 148-325 78-294 (336)
124 2fbn_A 70 kDa peptidylprolyl i 99.7 2.3E-16 8E-21 133.8 11.8 152 142-293 11-182 (198)
125 2qfc_A PLCR protein; TPR, HTH, 99.7 3.2E-15 1.1E-19 135.1 19.6 161 137-298 77-266 (293)
126 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.9E-18 142.7 33.0 213 147-385 1088-1310(1630)
127 2e2e_A Formate-dependent nitri 99.7 1.1E-15 3.7E-20 127.1 15.3 126 177-303 21-149 (177)
128 3upv_A Heat shock protein STI1 99.7 1.4E-15 4.6E-20 118.9 14.8 106 197-303 1-112 (126)
129 2c2l_A CHIP, carboxy terminus 99.7 5.5E-16 1.9E-20 139.2 13.7 164 163-330 1-169 (281)
130 4gcn_A Protein STI-1; structur 99.7 9.7E-16 3.3E-20 120.0 12.6 104 199-303 7-117 (127)
131 3u3w_A Transcriptional activat 99.7 3.2E-15 1.1E-19 135.1 17.1 159 139-298 79-266 (293)
132 2c2l_A CHIP, carboxy terminus 99.7 8.4E-16 2.9E-20 138.0 13.0 185 135-325 4-199 (281)
133 1b89_A Protein (clathrin heavy 99.6 1E-15 3.5E-20 142.1 12.8 220 139-404 98-340 (449)
134 2e2e_A Formate-dependent nitri 99.6 1.7E-15 5.7E-20 126.0 12.6 128 145-272 20-153 (177)
135 2hr2_A Hypothetical protein; a 99.6 8.3E-16 2.8E-20 122.5 10.1 102 166-267 11-135 (159)
136 1na0_A Designed protein CTPR3; 99.6 1.9E-14 6.5E-19 111.4 17.6 117 166-282 9-125 (125)
137 1elw_A TPR1-domain of HOP; HOP 99.6 1.8E-14 6.2E-19 110.3 17.3 114 165-278 3-116 (118)
138 3q49_B STIP1 homology and U bo 99.6 5.3E-15 1.8E-19 117.1 14.5 115 164-278 7-126 (137)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4.3E-16 1.5E-20 149.7 9.7 143 148-290 247-407 (457)
140 4f3v_A ESX-1 secretion system 99.6 8.3E-15 2.8E-19 128.7 16.9 231 10-276 2-249 (282)
141 3q7a_A Farnesyltransferase alp 99.6 3.8E-14 1.3E-18 128.6 21.6 164 144-308 63-249 (349)
142 2hr2_A Hypothetical protein; a 99.6 2.7E-15 9.3E-20 119.6 12.3 103 200-303 11-136 (159)
143 1a17_A Serine/threonine protei 99.6 1.6E-14 5.3E-19 118.3 17.4 129 135-263 13-146 (166)
144 3rkv_A Putative peptidylprolyl 99.6 2.9E-15 9.8E-20 122.7 12.7 117 165-281 10-145 (162)
145 1hxi_A PEX5, peroxisome target 99.6 3.7E-15 1.3E-19 115.6 12.4 99 169-267 20-118 (121)
146 3sz7_A HSC70 cochaperone (SGT) 99.6 1.3E-14 4.3E-19 119.1 15.8 114 196-310 7-122 (164)
147 2fbn_A 70 kDa peptidylprolyl i 99.6 1.1E-15 3.7E-20 129.7 9.3 145 165-310 3-165 (198)
148 1hxi_A PEX5, peroxisome target 99.6 8.3E-15 2.8E-19 113.6 12.5 101 202-303 19-119 (121)
149 3gw4_A Uncharacterized protein 99.6 2.1E-14 7.1E-19 121.8 14.7 155 145-300 2-178 (203)
150 3q49_B STIP1 homology and U bo 99.6 4E-14 1.4E-18 112.0 15.1 107 194-301 3-109 (137)
151 2xev_A YBGF; tetratricopeptide 99.6 4.5E-14 1.5E-18 110.4 15.3 116 167-282 3-124 (129)
152 2qfc_A PLCR protein; TPR, HTH, 99.6 2.1E-13 7.2E-18 123.1 21.5 163 163-326 72-267 (293)
153 2dba_A Smooth muscle cell asso 99.6 4.5E-14 1.6E-18 113.1 15.2 117 163-279 25-144 (148)
154 1elr_A TPR2A-domain of HOP; HO 99.6 3E-14 1E-18 111.3 13.8 118 164-282 2-126 (131)
155 1wao_1 Serine/threonine protei 99.6 8.3E-16 2.8E-20 148.3 5.5 137 165-302 5-154 (477)
156 2lni_A Stress-induced-phosphop 99.6 4.3E-14 1.5E-18 110.9 14.5 118 132-249 13-133 (133)
157 2vyi_A SGTA protein; chaperone 99.6 6.1E-14 2.1E-18 109.5 15.0 117 134-250 11-130 (131)
158 3rkv_A Putative peptidylprolyl 99.6 4.9E-14 1.7E-18 115.3 14.9 103 200-303 11-131 (162)
159 1elw_A TPR1-domain of HOP; HOP 99.6 1.3E-13 4.5E-18 105.4 15.7 110 199-309 3-114 (118)
160 2if4_A ATFKBP42; FKBP-like, al 99.6 3.3E-15 1.1E-19 137.7 7.7 140 163-303 176-333 (338)
161 4f3v_A ESX-1 secretion system 99.6 7.8E-15 2.7E-19 128.9 9.4 189 139-331 11-242 (282)
162 2kck_A TPR repeat; tetratricop 99.6 2.1E-14 7.1E-19 109.0 10.1 104 197-301 3-109 (112)
163 1dce_A Protein (RAB geranylger 99.5 1E-13 3.5E-18 136.1 17.3 163 147-310 40-235 (567)
164 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.8E-15 2.3E-19 141.3 8.4 132 178-310 246-394 (457)
165 2kck_A TPR repeat; tetratricop 99.5 4.3E-14 1.5E-18 107.2 10.7 106 163-268 3-111 (112)
166 2dba_A Smooth muscle cell asso 99.5 3.3E-13 1.1E-17 108.0 16.3 113 195-308 23-140 (148)
167 1na0_A Designed protein CTPR3; 99.5 4.3E-13 1.5E-17 103.6 16.5 114 195-309 3-119 (125)
168 1ihg_A Cyclophilin 40; ppiase 99.5 1E-13 3.6E-18 129.1 14.8 125 165-289 222-362 (370)
169 3u3w_A Transcriptional activat 99.5 2.8E-13 9.4E-18 122.3 16.4 159 168-327 77-268 (293)
170 1zu2_A Mitochondrial import re 99.5 6.6E-14 2.3E-18 111.3 10.3 91 178-268 14-125 (158)
171 3q7a_A Farnesyltransferase alp 99.5 1.2E-12 4.2E-17 118.7 19.8 219 163-382 51-329 (349)
172 3gw4_A Uncharacterized protein 99.5 7E-13 2.4E-17 112.2 17.0 168 176-390 2-182 (203)
173 2xev_A YBGF; tetratricopeptide 99.5 3.5E-13 1.2E-17 105.3 14.1 102 201-303 3-110 (129)
174 3k9i_A BH0479 protein; putativ 99.5 2.8E-14 9.7E-19 109.8 7.3 95 178-272 2-99 (117)
175 1dce_A Protein (RAB geranylger 99.5 1.6E-12 5.6E-17 127.5 21.0 160 178-338 40-234 (567)
176 3ro3_A PINS homolog, G-protein 99.5 2.1E-13 7E-18 110.6 11.9 132 166-298 9-158 (164)
177 4b4t_Q 26S proteasome regulato 99.5 7.6E-13 2.6E-17 126.1 17.5 159 139-298 59-245 (434)
178 1b89_A Protein (clathrin heavy 99.5 2.3E-13 7.9E-18 126.4 13.0 172 136-322 123-308 (449)
179 1elr_A TPR2A-domain of HOP; HO 99.5 5.5E-13 1.9E-17 104.0 13.0 112 198-310 2-121 (131)
180 3ro3_A PINS homolog, G-protein 99.5 8.7E-13 3E-17 106.9 14.2 133 134-266 8-161 (164)
181 3mv2_B Coatomer subunit epsilo 99.5 3.4E-12 1.2E-16 113.6 18.7 160 138-303 103-287 (310)
182 2if4_A ATFKBP42; FKBP-like, al 99.5 7.6E-14 2.6E-18 128.6 8.3 135 135-269 179-334 (338)
183 1zu2_A Mitochondrial import re 99.5 2.2E-13 7.6E-18 108.3 9.6 92 211-303 13-125 (158)
184 1wao_1 Serine/threonine protei 99.4 5.7E-14 2E-18 135.5 6.0 129 139-267 10-154 (477)
185 3k9i_A BH0479 protein; putativ 99.4 2.1E-13 7.3E-18 104.9 7.5 91 212-303 2-95 (117)
186 4b4t_Q 26S proteasome regulato 99.4 2.9E-12 1E-16 122.0 16.8 189 138-327 7-247 (434)
187 1ihg_A Cyclophilin 40; ppiase 99.4 5.7E-12 2E-16 117.3 15.8 122 135-256 223-363 (370)
188 3mv2_B Coatomer subunit epsilo 99.4 1.2E-11 4.2E-16 110.0 16.9 175 154-332 85-289 (310)
189 2l6j_A TPR repeat-containing p 99.3 1.3E-12 4.4E-17 99.0 6.0 92 166-257 4-101 (111)
190 2l6j_A TPR repeat-containing p 99.3 1E-12 3.5E-17 99.6 4.9 95 199-293 3-103 (111)
191 2kat_A Uncharacterized protein 99.3 2.2E-11 7.7E-16 93.0 12.2 94 184-277 3-98 (115)
192 1na3_A Designed protein CTPR2; 99.3 3.2E-11 1.1E-15 87.6 12.2 82 200-281 9-90 (91)
193 1na3_A Designed protein CTPR2; 99.3 3E-11 1E-15 87.7 11.5 86 163-248 6-91 (91)
194 4e6h_A MRNA 3'-END-processing 99.3 5.1E-10 1.7E-14 111.5 22.7 215 152-389 326-575 (679)
195 2kat_A Uncharacterized protein 99.2 8.7E-11 3E-15 89.7 10.9 85 218-303 3-87 (115)
196 3n71_A Histone lysine methyltr 99.2 1.1E-10 3.7E-15 112.0 12.8 92 202-293 353-460 (490)
197 3n71_A Histone lysine methyltr 99.2 1.1E-10 3.6E-15 112.0 12.6 124 140-263 314-464 (490)
198 4e6h_A MRNA 3'-END-processing 99.2 1.2E-09 4.1E-14 108.8 20.2 197 134-331 342-576 (679)
199 2kc7_A BFR218_protein; tetratr 99.2 5.3E-11 1.8E-15 88.1 7.8 88 205-301 5-93 (99)
200 3ma5_A Tetratricopeptide repea 99.2 1.4E-10 4.6E-15 86.2 9.8 70 196-265 3-72 (100)
201 2kc7_A BFR218_protein; tetratr 99.2 5.7E-11 2E-15 87.9 7.1 91 170-268 4-95 (99)
202 1klx_A Cysteine rich protein B 99.1 1.4E-09 4.9E-14 85.9 14.7 111 181-300 10-128 (138)
203 1klx_A Cysteine rich protein B 99.1 8.2E-10 2.8E-14 87.3 12.8 119 149-275 9-136 (138)
204 3ma5_A Tetratricopeptide repea 99.1 4.6E-10 1.6E-14 83.3 9.5 74 229-303 2-75 (100)
205 3ly7_A Transcriptional activat 99.0 2.4E-08 8.3E-13 90.4 17.7 133 169-303 199-344 (372)
206 3u64_A Protein TP_0956; tetrat 98.9 1.8E-07 6.3E-12 81.2 17.6 109 193-302 145-273 (301)
207 1pc2_A Mitochondria fission pr 98.8 6.6E-08 2.2E-12 75.9 12.4 96 182-277 14-114 (152)
208 3ly7_A Transcriptional activat 98.8 1.9E-07 6.6E-12 84.6 16.8 130 139-269 200-345 (372)
209 3bee_A Putative YFRE protein; 98.8 4.6E-08 1.6E-12 71.0 9.6 71 196-266 2-75 (93)
210 3qwp_A SET and MYND domain-con 98.8 3.6E-08 1.2E-12 93.1 11.4 105 175-279 296-424 (429)
211 3qww_A SET and MYND domain-con 98.8 4.1E-08 1.4E-12 92.6 11.5 93 178-270 310-423 (433)
212 3qwp_A SET and MYND domain-con 98.7 5.1E-08 1.7E-12 92.1 11.2 108 140-247 292-426 (429)
213 3bee_A Putative YFRE protein; 98.7 7.2E-08 2.5E-12 69.9 9.3 71 163-233 3-76 (93)
214 3qww_A SET and MYND domain-con 98.7 5.1E-08 1.7E-12 92.0 10.3 95 142-236 305-423 (433)
215 2v5f_A Prolyl 4-hydroxylase su 98.7 1.9E-07 6.6E-12 69.4 11.1 74 167-240 6-86 (104)
216 2v5f_A Prolyl 4-hydroxylase su 98.7 2.9E-07 1E-11 68.4 11.9 78 199-276 4-88 (104)
217 3u64_A Protein TP_0956; tetrat 98.7 3.4E-07 1.1E-11 79.6 13.3 121 146-266 132-272 (301)
218 4g26_A Pentatricopeptide repea 98.6 5E-06 1.7E-10 80.2 22.4 163 140-303 31-211 (501)
219 1pc2_A Mitochondria fission pr 98.6 2.2E-07 7.5E-12 72.9 9.1 88 215-303 13-105 (152)
220 2uy1_A Cleavage stimulation fa 98.5 2.3E-05 7.7E-10 75.5 21.4 165 151-322 195-380 (493)
221 2uy1_A Cleavage stimulation fa 98.4 0.00018 6.2E-09 69.2 26.6 160 140-303 19-246 (493)
222 4g26_A Pentatricopeptide repea 98.3 0.00021 7.1E-09 68.9 23.4 158 168-326 28-205 (501)
223 1nzn_A CGI-135 protein, fissio 98.3 1.5E-05 5E-10 60.2 11.8 96 181-276 16-116 (126)
224 4h7y_A Dual specificity protei 97.9 0.00021 7.2E-09 55.1 12.3 107 195-303 8-128 (161)
225 1nzn_A CGI-135 protein, fissio 97.9 7.7E-05 2.6E-09 56.2 9.7 91 212-303 13-108 (126)
226 4h7y_A Dual specificity protei 97.8 0.00085 2.9E-08 51.7 13.1 107 163-270 10-130 (161)
227 3ffl_A Anaphase-promoting comp 97.8 0.00017 5.8E-09 56.9 9.5 128 138-278 23-165 (167)
228 3ffl_A Anaphase-promoting comp 97.7 0.00045 1.5E-08 54.5 11.0 115 117-244 42-165 (167)
229 1y8m_A FIS1; mitochondria, unk 97.5 0.0037 1.3E-07 47.8 13.8 79 197-275 36-118 (144)
230 3o48_A Mitochondria fission 1 97.5 0.0016 5.4E-08 49.2 11.1 74 199-272 39-116 (134)
231 3txn_A 26S proteasome regulato 97.3 0.055 1.9E-06 49.7 20.7 96 134-229 98-210 (394)
232 3o48_A Mitochondria fission 1 97.2 0.0038 1.3E-07 47.2 10.5 71 134-204 39-116 (134)
233 1y8m_A FIS1; mitochondria, unk 97.2 0.0055 1.9E-07 46.9 10.9 52 185-236 61-113 (144)
234 3kae_A CDC27, possible protein 97.1 0.066 2.2E-06 42.1 18.4 91 139-231 37-145 (242)
235 3txn_A 26S proteasome regulato 96.8 0.07 2.4E-06 49.1 16.9 161 137-298 21-210 (394)
236 3kae_A CDC27, possible protein 96.6 0.17 5.9E-06 39.8 16.5 116 146-266 13-146 (242)
237 4b4t_P 26S proteasome regulato 96.5 0.23 7.9E-06 46.7 18.8 95 135-229 137-247 (445)
238 4gns_B Protein CSD3, chitin bi 96.4 0.042 1.5E-06 54.9 13.5 111 182-293 265-396 (754)
239 4gns_B Protein CSD3, chitin bi 96.3 0.019 6.6E-07 57.3 10.6 112 148-260 261-397 (754)
240 1ya0_A SMG-7 transcript varian 96.0 0.049 1.7E-06 51.9 11.0 80 167-246 153-232 (497)
241 3spa_A Mtrpol, DNA-directed RN 95.8 0.26 8.9E-06 50.7 16.0 98 166-263 127-230 (1134)
242 1ya0_A SMG-7 transcript varian 95.8 0.065 2.2E-06 51.0 11.0 79 202-280 154-232 (497)
243 3spa_A Mtrpol, DNA-directed RN 95.7 0.41 1.4E-05 49.2 17.0 103 200-303 127-237 (1134)
244 2ff4_A Probable regulatory pro 95.6 0.26 8.7E-06 45.5 14.3 111 173-297 122-233 (388)
245 3mkq_B Coatomer subunit alpha; 95.6 0.34 1.2E-05 38.8 12.9 101 144-259 14-114 (177)
246 2ff4_A Probable regulatory pro 95.5 0.28 9.5E-06 45.3 14.3 108 140-262 120-233 (388)
247 3mkq_B Coatomer subunit alpha; 95.5 0.61 2.1E-05 37.3 14.2 99 177-293 16-114 (177)
248 3mkq_A Coatomer beta'-subunit; 95.5 0.26 8.9E-06 50.1 15.2 47 144-192 661-707 (814)
249 1zbp_A Hypothetical protein VP 95.3 0.37 1.2E-05 41.3 12.8 120 175-302 6-133 (273)
250 4b4t_P 26S proteasome regulato 95.0 2.3 7.9E-05 39.8 18.8 184 112-298 30-247 (445)
251 1zbp_A Hypothetical protein VP 94.9 0.4 1.4E-05 41.1 11.8 60 243-303 6-65 (273)
252 3mkq_A Coatomer beta'-subunit; 94.8 0.47 1.6E-05 48.2 14.9 131 144-292 608-747 (814)
253 4b4t_R RPN7, 26S proteasome re 94.4 0.31 1.1E-05 45.6 11.2 101 165-265 130-239 (429)
254 4fhn_B Nucleoporin NUP120; pro 93.9 0.99 3.4E-05 48.0 15.1 30 163-192 839-868 (1139)
255 4b4t_S RPN3, 26S proteasome re 93.2 0.097 3.3E-06 49.5 5.3 124 142-267 143-303 (523)
256 4b4t_R RPN7, 26S proteasome re 92.8 0.52 1.8E-05 44.1 9.8 97 135-231 131-239 (429)
257 1wy6_A Hypothetical protein ST 92.2 2.9 0.0001 31.7 13.1 80 148-229 74-154 (172)
258 4b4t_S RPN3, 26S proteasome re 91.5 3.1 0.0001 39.4 13.1 147 131-286 177-359 (523)
259 4fhn_B Nucleoporin NUP120; pro 91.1 1.1 3.7E-05 47.7 10.9 118 172-293 818-963 (1139)
260 1qsa_A Protein (soluble lytic 90.7 13 0.00046 36.3 17.3 161 135-297 154-347 (618)
261 2w2u_A Hypothetical P60 katani 90.5 0.47 1.6E-05 32.6 5.0 35 11-45 15-49 (83)
262 2v6y_A AAA family ATPase, P60 88.5 0.71 2.4E-05 31.8 4.7 35 11-45 7-41 (83)
263 4ady_A RPN2, 26S proteasome re 88.2 19 0.00064 37.0 16.5 146 145-293 384-549 (963)
264 1wfd_A Hypothetical protein 15 86.5 1 3.5E-05 31.7 4.7 35 11-45 11-45 (93)
265 2v6x_A Vacuolar protein sortin 84.9 1.4 4.8E-05 30.4 4.7 35 11-45 9-43 (85)
266 4a5x_A MITD1, MIT domain-conta 84.2 1.4 4.7E-05 30.5 4.3 32 14-45 15-46 (86)
267 2cpt_A SKD1 protein, vacuolar 83.9 1.4 4.7E-05 32.6 4.5 36 10-45 13-48 (117)
268 4gq2_M Nucleoporin NUP120; bet 83.0 11 0.00036 39.2 12.3 48 234-281 897-949 (950)
269 2wpv_A GET4, UPF0363 protein Y 80.0 31 0.001 30.3 18.3 113 135-258 33-158 (312)
270 2vkj_A TM1634; membrane protei 79.4 3.2 0.00011 28.3 4.5 31 12-42 50-80 (106)
271 3lpz_A GET4 (YOR164C homolog); 78.1 37 0.0013 30.2 20.0 26 232-257 134-159 (336)
272 4ady_A RPN2, 26S proteasome re 76.6 36 0.0012 35.0 13.2 124 137-261 457-587 (963)
273 4gq2_M Nucleoporin NUP120; bet 74.9 29 0.00099 36.0 12.5 93 206-303 816-932 (950)
274 3ubw_A 14-3-3E, 14-3-3 protein 74.3 31 0.0011 29.2 10.3 29 16-44 32-60 (261)
275 3esl_A Checkpoint serine/threo 71.8 35 0.0012 27.7 9.7 77 221-299 58-145 (202)
276 3ax2_A Mitochondrial import re 70.5 13 0.00045 24.6 5.6 28 205-232 22-49 (73)
277 3ax2_A Mitochondrial import re 66.9 19 0.00065 23.8 5.9 33 170-202 21-53 (73)
278 2br9_A 14-3-3E, 14-3-3 protein 66.2 55 0.0019 27.3 10.0 29 16-44 6-34 (234)
279 3lpz_A GET4 (YOR164C homolog); 65.4 74 0.0025 28.2 24.9 144 132-293 52-212 (336)
280 2ijq_A Hypothetical protein; s 64.9 39 0.0013 26.3 8.3 60 238-298 36-104 (161)
281 3uzd_A 14-3-3 protein gamma; s 64.6 63 0.0022 27.2 10.9 29 16-44 5-33 (248)
282 3esl_A Checkpoint serine/threo 62.5 61 0.0021 26.3 9.9 66 164-230 78-145 (202)
283 3t5x_A PCI domain-containing p 59.7 19 0.00066 29.4 6.1 33 167-199 15-47 (203)
284 2crb_A Nuclear receptor bindin 57.5 21 0.00072 24.7 4.8 28 234-261 15-42 (97)
285 1qsa_A Protein (soluble lytic 55.5 1.6E+02 0.0053 28.7 25.1 93 122-215 59-151 (618)
286 2wvi_A Mitotic checkpoint seri 54.3 52 0.0018 25.7 7.4 75 220-301 43-128 (164)
287 1om2_A Protein (mitochondrial 54.2 21 0.00071 25.0 4.5 29 204-232 24-52 (95)
288 3t5v_B Nuclear mRNA export pro 53.6 33 0.0011 32.0 7.3 65 203-267 179-254 (455)
289 2crb_A Nuclear receptor bindin 51.1 28 0.00097 24.0 4.6 21 171-191 20-40 (97)
290 3t5x_A PCI domain-containing p 51.1 44 0.0015 27.2 6.9 33 201-233 15-47 (203)
291 3t5v_B Nuclear mRNA export pro 48.7 39 0.0013 31.5 6.9 64 170-233 180-254 (455)
292 2ynq_A ESSB; membrane protein, 47.9 95 0.0032 24.0 9.1 82 139-225 12-98 (161)
293 4a1g_A Mitotic checkpoint seri 47.1 67 0.0023 24.7 6.9 61 232-299 69-131 (152)
294 3iqu_A 14-3-3 protein sigma; s 46.7 1E+02 0.0036 25.6 8.5 179 16-228 9-204 (236)
295 2e2a_A Protein (enzyme IIA); h 45.5 23 0.0008 25.3 3.8 31 15-45 20-50 (105)
296 1wcr_A PTS system, N, N'-diace 45.1 24 0.00083 25.1 3.8 31 15-45 18-48 (103)
297 1om2_A Protein (mitochondrial 44.6 28 0.00097 24.3 4.0 27 171-197 25-51 (95)
298 3re2_A Predicted protein; meni 43.1 72 0.0025 28.5 7.1 30 267-297 295-324 (472)
299 4aez_C MAD3, mitotic spindle c 42.3 55 0.0019 27.0 6.1 59 234-299 120-180 (223)
300 2ynq_A ESSB; membrane protein, 42.2 1E+02 0.0034 23.9 7.1 76 117-192 23-99 (161)
301 2ijq_A Hypothetical protein; s 41.8 1.2E+02 0.0041 23.5 9.4 19 210-228 85-103 (161)
302 2cwy_A Hypothetical protein TT 41.4 76 0.0026 22.0 5.9 55 240-297 7-67 (94)
303 3k1s_A PTS system, cellobiose- 41.2 30 0.001 24.9 3.8 31 15-45 22-52 (109)
304 3re2_A Predicted protein; meni 41.1 1.1E+02 0.0038 27.3 8.0 66 198-263 253-325 (472)
305 2rpa_A Katanin P60 ATPase-cont 40.0 29 0.00099 23.3 3.3 27 203-229 15-41 (78)
306 2ymb_A MITD1, MIT domain-conta 40.0 6 0.00021 33.5 0.0 33 13-45 21-53 (257)
307 3l8r_A PTCA, putative PTS syst 40.0 31 0.0011 25.3 3.8 30 16-45 38-67 (120)
308 4b4t_O 26S proteasome regulato 38.7 2.2E+02 0.0076 25.7 12.1 89 174-262 84-197 (393)
309 2cwy_A Hypothetical protein TT 37.4 1E+02 0.0035 21.4 6.2 55 206-262 7-67 (94)
310 2rpa_A Katanin P60 ATPase-cont 35.6 35 0.0012 22.9 3.2 25 170-194 16-40 (78)
311 2xze_A STAM-binding protein; h 35.0 45 0.0015 25.5 4.2 38 8-45 33-70 (146)
312 3bqo_A Telomeric repeat-bindin 34.9 85 0.0029 25.3 5.8 36 239-274 122-157 (211)
313 2wpv_A GET4, UPF0363 protein Y 32.6 2.5E+02 0.0086 24.5 20.5 146 130-293 48-213 (312)
314 3u84_A Menin; MLL, JUND, ledgf 31.8 1.3E+02 0.0045 27.5 7.0 26 268-293 318-343 (550)
315 3u84_A Menin; MLL, JUND, ledgf 31.4 1.8E+02 0.0063 26.5 7.9 65 199-263 276-347 (550)
316 4gq4_A Menin; tumor suppressor 31.3 2.4E+02 0.0082 25.8 8.6 26 235-260 304-329 (489)
317 4gq4_A Menin; tumor suppressor 30.5 1.4E+02 0.0049 27.2 7.1 79 204-298 246-332 (489)
318 1wy6_A Hypothetical protein ST 29.6 1.9E+02 0.0064 22.1 15.4 21 142-162 14-34 (172)
319 4a5x_A MITD1, MIT domain-conta 29.5 85 0.0029 21.4 4.5 18 211-228 27-44 (86)
320 2cfu_A SDSA1; SDS-hydrolase, l 28.3 99 0.0034 30.4 6.5 46 203-248 452-497 (658)
321 4aez_C MAD3, mitotic spindle c 28.1 2.5E+02 0.0086 23.1 8.9 47 218-264 132-180 (223)
322 1o9d_A 14-3-3-like protein C; 27.9 2.8E+02 0.0094 23.5 12.1 181 16-228 9-206 (260)
323 2vkj_A TM1634; membrane protei 24.8 1.7E+02 0.0058 20.0 5.4 25 138-162 56-80 (106)
324 2v6x_A Vacuolar protein sortin 24.8 1.1E+02 0.0039 20.5 4.5 11 180-190 27-37 (85)
325 2cfu_A SDSA1; SDS-hydrolase, l 24.8 1.6E+02 0.0054 29.0 7.2 49 167-215 450-498 (658)
326 2br9_A 14-3-3E, 14-3-3 protein 24.5 3E+02 0.01 22.8 13.0 26 357-382 174-200 (234)
327 3dza_A Uncharacterized putativ 23.9 2.8E+02 0.0095 22.1 8.2 57 138-194 111-178 (191)
328 1wfd_A Hypothetical protein 15 23.3 1.2E+02 0.0042 20.8 4.5 10 180-189 29-38 (93)
329 2w2u_A Hypothetical P60 katani 22.4 1.8E+02 0.0062 19.5 7.1 16 212-227 31-46 (83)
330 3bu8_A Telomeric repeat-bindin 21.9 3.3E+02 0.011 22.3 7.9 38 208-245 122-159 (235)
331 4a1g_A Mitotic checkpoint seri 21.6 2.7E+02 0.0094 21.2 7.8 45 219-263 84-130 (152)
332 2cpt_A SKD1 protein, vacuolar 21.3 1.3E+02 0.0045 21.8 4.5 15 213-227 31-45 (117)
333 2zan_A Vacuolar protein sortin 21.0 20 0.0007 33.3 0.0 35 11-45 7-41 (444)
334 2npm_A 14-3-3 domain containin 20.1 4E+02 0.014 22.5 15.7 52 313-382 173-225 (260)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2e-32 Score=258.66 Aligned_cols=349 Identities=14% Similarity=0.047 Sum_probs=203.5
Q ss_pred HHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHH
Q psy1863 18 LIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEK 97 (425)
Q Consensus 18 l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~ 97 (425)
+++.|..+...|++++|++.+.++++.. |........++..+...|++. .+..
T Consensus 2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~-------------------~a~~ 54 (388)
T 1w3b_A 2 PMELAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLD-------------------RSAH 54 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-------------------HHHH
T ss_pred hhhHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-------------------HHHH
Confidence 4567888999999999999998887765 555444445555555545433 1111
Q ss_pred HHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHH
Q psy1863 98 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSF 174 (425)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~ 174 (425)
.+..+.+. .+...+.+..+|.++...|++++|+..|++++ |..+.++..+|.
T Consensus 55 ~~~~a~~~-------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 55 FSTLAIKQ-------------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp HHHHHHHH-------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhc-------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 11111110 01123344566666666666666666666665 556666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254 (425)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 254 (425)
++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcC
Q psy1863 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~ 327 (425)
..|+++++.+|+++.++..+|.++...|++++|+..|++ ++..+|+++ +..++.+ ++++|+..++++++..|
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666666666666666666666666666 666666655 4455544 56666666666666666
Q ss_pred CchhhHhhchHHHHHHHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863 328 PSIEDNFSNGYNWCVQSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL 398 (425)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l 398 (425)
.....+..+|..+...+....+. .+.....+..+|.++...|++++|+..++++.+.. |++......+
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 345 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNL 345 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHH
Confidence 66555555543333222221111 12233455566666666666666666666664433 3333333333
Q ss_pred hhhccCcCCCCcHHHHHHhHhHHh
Q psy1863 399 VSSEFQYLPTSEVPIYLENLLTVL 422 (425)
Q Consensus 399 ~~~~~~~~~~~ea~~~~~~~l~~~ 422 (425)
..........++|..+++++++..
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 333333345666666666665543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2e-30 Score=244.92 Aligned_cols=321 Identities=17% Similarity=0.121 Sum_probs=238.7
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEA 95 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 95 (425)
..+...+..+...|++++|...++.+++.. |........++..|...|++. ++
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--------p~~~~~~~~lg~~~~~~g~~~-------------------~A 86 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQ-------------------EA 86 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH-------------------HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCCHH-------------------HH
Confidence 345666778889999999999999988765 555555666666776666544 23
Q ss_pred HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHH
Q psy1863 96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNL 172 (425)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 172 (425)
...+..+..+ .+ .....+..+|.++...|++++|+..|++++ |..+.++..+
T Consensus 87 ~~~~~~al~~-----~p--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 87 IEHYRHALRL-----KP--------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp HHHHHHHHHH-----CT--------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHc-----Cc--------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3322222211 11 112344677888888888888888888877 7777788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 252 (425)
|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhh
Q psy1863 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKL 325 (425)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~ 325 (425)
|+..|++++..+|+++.++..+|.++...|++++|+..|++ +++.+|+++ +..++.+ ++++|+..++++++.
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR-AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888 888888777 6666666 778888888888888
Q ss_pred cCCchhhHhhchHHHHHHHhHHh---------hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863 326 IAPSIEDNFSNGYNWCVQSIRNS---------AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA 389 (425)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 389 (425)
.|.+...+..+|..+...+.... ...+.....+..+|.++...|++++|+..|+++.+..|..+
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 88777766666543332222111 12233456788899999999999999999999977665443
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=3e-27 Score=219.70 Aligned_cols=299 Identities=12% Similarity=0.070 Sum_probs=246.7
Q ss_pred HHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHH
Q psy1863 14 EIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKH 93 (425)
Q Consensus 14 ~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~ 93 (425)
.+..++..|..+...|+|++|++.++++++.. |........++..+...|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~------------------- 54 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSK------------------- 54 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH-------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHH-------------------
Confidence 35678999999999999999999999998866 544444455555555544433
Q ss_pred HHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c---chHH
Q psy1863 94 EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---E---MTSS 167 (425)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~---~~~~ 167 (425)
.+...+..+... . +.....+..+|.++...|++++|+..|++++ | ..+.
T Consensus 55 ~A~~~~~~~~~~----------------------~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 109 (359)
T 3ieg_A 55 AALPDLTKVIAL----------------------K---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109 (359)
T ss_dssp HHHHHHHHHHHH----------------------C---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHHHHHHh----------------------C---CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHH
Confidence 222222222111 1 1123556889999999999999999999998 7 7888
Q ss_pred HHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH
Q psy1863 168 AATNL------------SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235 (425)
Q Consensus 168 ~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (425)
++..+ |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.
T Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 189 (359)
T 3ieg_A 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 88777 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY------------QIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++..+|.++...|++++|+..++++++..|+++.++. .+|.++...|++++|+..+++ +++..|+++
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~ 268 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTEPSVA 268 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCch
Confidence 9999999999999999999999999999999888654 448889999999999999999 999999977
Q ss_pred ------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHH
Q psy1863 304 ------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVS 372 (425)
Q Consensus 304 ------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 372 (425)
+..+|.+ ++++|+..++++++..|.+. .++..+|.++...|+++
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV-------------------------NALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------------------HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH-------------------------HHHHHHHHHHHHcCCHH
Confidence 3345555 89999999999999888764 35566789999999999
Q ss_pred HHHHHHHHHHhhccCCcc
Q psy1863 373 QAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 373 ~A~~~~~~~~~~~~~~~~ 390 (425)
+|+..|+++.+..|..+.
T Consensus 324 ~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHhcCCCChH
Confidence 999999999877766544
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=6.8e-27 Score=224.83 Aligned_cols=305 Identities=12% Similarity=0.070 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHH
Q psy1863 9 ERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLH 88 (425)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~ 88 (425)
...+..+..+...|..+...|++++|++.++++++.. |........++..|...|++.
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~-------------- 77 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSK-------------- 77 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH--------------
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHCCCHH--------------
Confidence 3344567789999999999999999999999988755 444444455555555555433
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch
Q psy1863 89 REMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT 165 (425)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~ 165 (425)
++...+..+... . +.....+..+|.++...|++++|+..|++++ |..
T Consensus 78 -----~A~~~~~~al~~----------------------~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 78 -----AALPDLTKVIQL----------------------K---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp -----HHHHHHHHHHHH----------------------C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred -----HHHHHHHHHHhc----------------------C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 222222222111 1 1124456788999999999999999999987 666
Q ss_pred H---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863 166 S---SAATNL------------SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230 (425)
Q Consensus 166 ~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (425)
+ .++..+ |.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++..+
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5 665544 6668999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI------------ASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 231 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
|+++.++..+|.++...|++++|+..|++++...|++..++..+ |.++...|++++|+.+|++ +++.
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~l~~ 286 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKT 286 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhc
Confidence 99999999999999999999999999999999999888877666 8889999999999999999 9999
Q ss_pred CcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHh
Q psy1863 299 VRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR 367 (425)
Q Consensus 299 ~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 367 (425)
.|+++ +..++.+ ++++|+..++++++..|.+. .++..+|.++..
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------------------------~~~~~l~~~~~~ 341 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV-------------------------NALKDRAEAYLI 341 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-------------------------HHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-------------------------HHHHHHHHHHHH
Confidence 88864 4555555 88999999999988887654 355667899999
Q ss_pred cCCHHHHHHHHHHHHhhccCCccc
Q psy1863 368 MNDVSQAVDVLKSCDEMTSSAATN 391 (425)
Q Consensus 368 ~g~~~~A~~~~~~~~~~~~~~~~~ 391 (425)
.|++++|+..++++.+..|..+..
T Consensus 342 ~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred hcCHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999998877665543
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.9e-26 Score=214.22 Aligned_cols=286 Identities=10% Similarity=0.007 Sum_probs=224.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
.+.++.+|..++..|++++|+..|++++ |.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 3456788888999999999999998888 7888889999999999999999999999999989988889999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCc---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDA---TCIEALYNL------------GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
..|++++|+..|++++..+| +++.++..+ |.++...|++++|+..+++++...|.++.++..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999888 777777776 688888999999999999999999988889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc------------h
Q psy1863 277 LYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN------------G 337 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~------------~ 337 (425)
++...|++++|+..+++ +++..|+++ +..++.+ ++++|...++++++..|.....+... |
T Consensus 163 ~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKA-ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHTTCHHHHHHHHHH-HHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 888888888 6777766 88889999999998888876644322 1
Q ss_pred HHHHHHHhHHhhch---------hh----hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccC
Q psy1863 338 YNWCVQSIRNSAHS---------SL----AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQ 404 (425)
Q Consensus 338 ~~~~~~~~~~~~~~---------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 404 (425)
..+...+....+.. +. ...++..+|.++...|++++|+..++++.+..|..+ ...+.+......
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 318 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDRAEAYLI 318 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHH
Confidence 11111111111111 11 124466799999999999999999999987765443 344444444444
Q ss_pred cCCCCcHHHHHHhHhHHhhc
Q psy1863 405 YLPTSEVPIYLENLLTVLQY 424 (425)
Q Consensus 405 ~~~~~ea~~~~~~~l~~~~~ 424 (425)
.....+|..++++++++.|.
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTT
T ss_pred cCCHHHHHHHHHHHHhcCCC
Confidence 55788999999999887653
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-27 Score=230.11 Aligned_cols=261 Identities=14% Similarity=0.100 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHH---cCCHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 135 QDLEINKAVTFLR---MNDVSQAVDVLKSCD-----------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACT 194 (425)
Q Consensus 135 ~~~~~~~a~~~~~---~g~~~~A~~~~~~~~-----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 194 (425)
...++.+|..++. .|++++|+..|++++ |..+.++..+|.++...|++++|+..+++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344555555554 666666666666653 22345666666666666666666666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
.+|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.++.++..+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 6666 666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh------hHhhchHHHH
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE------DNFSNGYNWC 341 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~ 341 (425)
|.++...|++++|+..+++ +++..|+++ +..+|.+ ++++|...++++++..|.... .+...|..+.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSE-AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHH-HHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH-HHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 6666666666666666666 666666655 5555554 666666666666666665533 3333333332
Q ss_pred H---HHhHHhhc---------hhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHH
Q psy1863 342 V---QSIRNSAH---------SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYF 397 (425)
Q Consensus 342 ~---~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 397 (425)
. .+....+. .+....++..+|.+|...|++++|+..|+++.+..|..+.....+.+
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 2 22211111 12233455566666666666666666666666655555544444333
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-26 Score=212.76 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=188.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
.++.++...|++++|+..+++++ |.++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|+
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 44667778888888888888888 778888888888888888 88889999998888888888888888888888899
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a 295 (425)
+++|+.+|++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++ +
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a 219 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD-A 219 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH-H
Confidence 999999999988888888888888888888889999999999988888888888888888888888999999888888 8
Q ss_pred HhcC---------cchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHH
Q psy1863 296 LEAV---------RNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 359 (425)
Q Consensus 296 ~~~~---------p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (425)
++.. |..+ +..+|.+ ++++|+.+++++++..|.+. .++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------------------~~~~ 274 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-------------------------STYS 274 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-------------------------HHHH
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-------------------------HHHH
Confidence 8775 3333 6667766 88888888888888877643 3556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863 360 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 360 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 390 (425)
.+|.++...|++++|+..++++.+..|..+.
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 6788999999999999999998766655543
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=5.9e-27 Score=230.39 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=213.0
Q ss_pred cCCHHHHHHHHHhcc---cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMT-------SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV 217 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 217 (425)
.|++++|+..|++++ |.+ +.++..+|.++...|++++|+..|++++..+|. +.++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 358899999999988 554 446888999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
+|+.+|++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.++++ +++
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE-TKL 372 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch------HHHHHH----------HhHHh------
Q psy1863 298 AVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG------YNWCVQ----------SIRNS------ 348 (425)
Q Consensus 298 ~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~----------~~~~~------ 348 (425)
..|+++ +..+|.+ ++++|...++++++..|.....+...+ ..+... +....
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 999988 7777777 999999999999999887665444332 112221 22222
Q ss_pred ---hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863 349 ---AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL 398 (425)
Q Consensus 349 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l 398 (425)
...+....++..+|.+|...|++++|++.|+++.+..|..+.......+.
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 505 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA 505 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHH
Confidence 22333457788999999999999999999999999888877776666554
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6.2e-26 Score=226.20 Aligned_cols=356 Identities=10% Similarity=0.034 Sum_probs=242.9
Q ss_pred HHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhc--chhhcccchhHHHHHHH
Q psy1863 14 EIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKK--NARAVRNDALSQLHREM 91 (425)
Q Consensus 14 ~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~d~l~~~~~~~ 91 (425)
.+......+..+...|++++|++.++++++.. |........++..+...+... ..+.+. +.......
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~---~~~~~~~~ 267 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--------AKCYEAFDQLVSNHLLTADEEWDLVLKLN---YSTYSKED 267 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCSCHHHHHHHHHHSC---THHHHGGG
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------chhhHHHHHHHHhhcccchhHHHHHHhcC---Ccccccch
Confidence 35667888889999999999999999998765 333222222222222111100 000000 00000000
Q ss_pred HHHHHHHHHHhhhhhhh-chhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHH
Q psy1863 92 KHEAEKCILTSAKLIAP-SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSS 167 (425)
Q Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~ 167 (425)
. .....+ ...++.. .-.+++..+...+...+.. +.....+..+|..+...|++++|+.+|++++ |.+..
T Consensus 268 ~-~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 340 (597)
T 2xpi_A 268 A-AFLRSL--YMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340 (597)
T ss_dssp H-HHHHHH--HHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred H-HHHHHH--HHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence 0 000000 0000000 0112233333222222221 2345667889999999999999999999988 77888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 247 (425)
++..++.++...|++++|+..+++++...|++..++..+|.+|...|++++|+.+|+++++.+|.+..+|..+|.+|...
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHH
Q psy1863 248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCIL 320 (425)
Q Consensus 248 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~ 320 (425)
|++++|+..|++++...|++..++..+|.+|...|++++|+.+|++ +++..|.++ +..++.+ ++++|+..|+
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS-SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999888 7777776 8999999999
Q ss_pred HHHhhc------CCc-hhhHhhchHHHHHHHhHHhh---------chhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863 321 TSAKLI------APS-IEDNFSNGYNWCVQSIRNSA---------HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM 384 (425)
Q Consensus 321 ~a~~~~------~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 384 (425)
++++.. |.. ...+..+|..+...+....+ ..+....++..++.+|...|++++|++.++++.+.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 998884 332 22333333222211111111 11223345555666666666666666666666555
Q ss_pred ccCC
Q psy1863 385 TSSA 388 (425)
Q Consensus 385 ~~~~ 388 (425)
.|.+
T Consensus 580 ~p~~ 583 (597)
T 2xpi_A 580 SPNE 583 (597)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4433
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-26 Score=223.23 Aligned_cols=349 Identities=12% Similarity=0.003 Sum_probs=217.8
Q ss_pred HHhhHHhccccHHHHHHHHHHhhHHHHHHHHHH-HhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863 20 DESCICARNQDFKAALEKAKLASNKERVLIKLQ-EQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC 98 (425)
Q Consensus 20 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~ 98 (425)
..|.+++.+|++++|++.+++|+++.+...... ++.......|++.+|...|++. ++..+
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~-------------------~A~~~ 116 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS-------------------DVQIY 116 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHH-------------------HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChH-------------------HHHHH
Confidence 468889999999999999999998764221100 0111112334555555555544 12222
Q ss_pred HHHhhhhhh----------------------hchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHH---HHcCCHHH
Q psy1863 99 ILTSAKLIA----------------------PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTF---LRMNDVSQ 153 (425)
Q Consensus 99 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~ 153 (425)
+..+..+.. ..-..++..+...+.+.+...+. ..+.+..+|.++ ...++.++
T Consensus 117 ~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCchHHHH
Confidence 211111100 00011233343344444443322 233444555543 34567777
Q ss_pred HHHHHHhcc---cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863 154 AVDVLKSCD---EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226 (425)
Q Consensus 154 A~~~~~~~~---~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (425)
|+..|++++ |..+.++..+|..+.. .|++++|+.++++++..+|.++.++.++|.++...|++++|+..|+++
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 888888877 7777777777766554 456778888888888888888888888888888888888888888888
Q ss_pred HhcCcCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy1863 227 LDNDATCIEALYNLGLAHKHL-------------------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287 (425)
Q Consensus 227 l~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (425)
++.+|+++.++.++|.+|... +.+++|+..+++++..+|.+..++..+|.++...|++++|
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence 888888888888888887543 3467888888888888888888888899999999999999
Q ss_pred HHHHHHHHHhcCcchH-----HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHH-hHHhhchhhhc
Q psy1863 288 SDVNENLLLEAVRNDA-----LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQS-IRNSAHSSLAQ 355 (425)
Q Consensus 288 ~~~~~~~a~~~~p~~~-----~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 355 (425)
+.+|++ ++...|++. +..++.+ ++++|+.+|.+++++.|.......... .+... .......|...
T Consensus 354 ~~~~~k-aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~--~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 354 EYYFQK-EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD--KLQKIAKMRLSKNGADS 430 (472)
T ss_dssp HHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH--HHHHHHHHHHHHCC-CT
T ss_pred HHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH--HHHHHHHHHHHhCCCCH
Confidence 999999 998887665 3444443 788999999999999888765332221 11111 11123345567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh
Q psy1863 356 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS 393 (425)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 393 (425)
.++..+|.+|...|++++|++.|+++....+..|...+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp THHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 88999999999999999999999999887777665443
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.4e-25 Score=221.89 Aligned_cols=274 Identities=13% Similarity=0.049 Sum_probs=228.0
Q ss_pred HcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863 147 RMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224 (425)
Q Consensus 147 ~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (425)
..|++++|+..|++++ +.++.++..+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..++
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445555555555554 46678888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-
Q psy1863 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA- 303 (425)
Q Consensus 225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~- 303 (425)
+++...|+++.++..+|.+|...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|++ +++..|++.
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~ 442 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT-AARLFQGTHL 442 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTTTCSH
T ss_pred HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999877
Q ss_pred -HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhc---------------hhhh-cHHHHHH
Q psy1863 304 -LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAH---------------SSLA-QDLEINK 361 (425)
Q Consensus 304 -~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~l 361 (425)
+..++.+ ++++|...|+++++..|.+...+..+|..+...+....+. .+.. ..++..+
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 7777766 9999999999999999998887777765444332222111 1221 4678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhhc
Q psy1863 362 AVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQY 424 (425)
Q Consensus 362 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~ 424 (425)
+.+|...|++++|+..++++.+..|.. ......+..........++|..++++++++-|.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999997776544 344444444444455788999999999987654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=6.9e-26 Score=217.80 Aligned_cols=288 Identities=10% Similarity=0.009 Sum_probs=233.8
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
+.....++.+|..+...|++++|+..|++++ |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3456677888999999999999999999988 7889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCI---EALYNL------------GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
++...|++++|+.+|++++..+|++. .++..+ |.++...|++++|+..|++++...|.++.++..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999999887 766555 666899999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhc----------
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSN---------- 336 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~---------- 336 (425)
+|.++...|++++|+..|++ +++.+|+++ +..++.+ ++++|+..+++++...|.....+...
T Consensus 183 l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKA-ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHH-HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999998888 7777777 89999999999999999887655433
Q ss_pred --hHHHHHHHhHHhhch---------hhh----cHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhh
Q psy1863 337 --GYNWCVQSIRNSAHS---------SLA----QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSS 401 (425)
Q Consensus 337 --~~~~~~~~~~~~~~~---------~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~ 401 (425)
|..+...+....+.. +.. ...+..+|.++...|++++|+..++++.+..|..+ ...+.+...
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~ 338 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence 222222211111111 111 34677899999999999999999999977765443 444444344
Q ss_pred ccCcCCCCcHHHHHHhHhHHhh
Q psy1863 402 EFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 402 ~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
........+|..++++++++.|
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHhCc
Confidence 4445578899999999987654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=7.5e-26 Score=222.48 Aligned_cols=217 Identities=14% Similarity=0.085 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
...+..+|..+...|++++|+..|++++ |. +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999 66 8999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcchH--------HHHHHH---------------hhHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863 292 ENLLLEAVRNDA--------LSQLHR---------------EMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS 348 (425)
Q Consensus 292 ~~~a~~~~p~~~--------~~~l~~---------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (425)
++ +++..|+++ +..++. -++++|+.+++++++..|.+...+..+|..+...+....
T Consensus 402 ~~-a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 402 DI-AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HH-HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HH-HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 99 999988765 122222 257899999999999999999888887765555444444
Q ss_pred hchhh
Q psy1863 349 AHSSL 353 (425)
Q Consensus 349 ~~~~~ 353 (425)
+...+
T Consensus 481 A~~~~ 485 (537)
T 3fp2_A 481 AIELF 485 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.3e-26 Score=216.81 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
...++.+|..+...|++++|+..|++++ |..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4446889999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNL----------GLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYE 279 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 279 (425)
..|++++|+.+|++++..+|++..++..+ |.++...|++++|+.+|++++...|. ++.++..+|.++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 99999999999999999999876666554 99999999999999999999999999 8999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchh
Q psy1863 280 ITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS 352 (425)
Q Consensus 280 ~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (425)
..|++++|+.+|++ +++..|+++ +..+|.+ ++++|+..|+++++..|...
T Consensus 225 ~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------------- 281 (365)
T 4eqf_A 225 LSGEFNRAIDAFNA-ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI---------------------- 281 (365)
T ss_dssp HHTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------
T ss_pred HCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----------------------
Confidence 99999999999999 999999988 8888887 99999999999999988763
Q ss_pred hhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q psy1863 353 LAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 388 (425)
Q Consensus 353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 388 (425)
.++..+|.+|...|++++|+..|+++.+..|..
T Consensus 282 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 282 ---RSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp ---HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 345667889999999999999999998777653
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-26 Score=223.90 Aligned_cols=390 Identities=12% Similarity=0.078 Sum_probs=269.4
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK 92 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 92 (425)
+.+..+...|..+...|+|++|+..+++++... | +.....+++..+...|++..........+...
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 69 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK--------E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK----- 69 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----
Confidence 457889999999999999999999999998876 4 34456677888888887662111111111100
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHH-----------------
Q psy1863 93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAV----------------- 155 (425)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~----------------- 155 (425)
+.........+... ...+++..+...+...+...+.........+.........+...+++
T Consensus 70 p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 70 PDYSKVLLRRASAN--EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp SCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred hHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 00000000011110 11123333443344433333222211111111111111111111111
Q ss_pred ------------------HHHHhcc----------cchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--C-
Q psy1863 156 ------------------DVLKSCD----------EMTSSAATNLSFIYFL---QGEVEQAEKMAEEACT-----A--D- 196 (425)
Q Consensus 156 ------------------~~~~~~~----------~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~-----~--~- 196 (425)
..+.... |.++.++..+|.+++. .|++++|+..|++++. . +
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 0111100 3458888999998887 8999999999999998 5 4
Q ss_pred ------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 197 ------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 197 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
|.++.++..+|.++...|++++|+.+|++++..+|. +.++..+|.++...|++++|+..+++++...|.++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 306 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH
T ss_pred cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH
Confidence 444678999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHH
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQ 343 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 343 (425)
+..+|.++...|++++|+..+++ +++..|+++ +..++.+ ++++|+..++++++..|.+...+...|..+...
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDK-AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHH-HHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH-HHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 99999999999999999999999 999999887 7777777 899999999999999999888777776544433
Q ss_pred HhHHhhch---------hhh------cHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCc
Q psy1863 344 SIRNSAHS---------SLA------QDLEINKAVTFLR---MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQY 405 (425)
Q Consensus 344 ~~~~~~~~---------~~~------~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 405 (425)
+....+.. +.. ...+..+|.++.. .|++++|+..++++....|..+ ...+.+.......
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~ 462 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE---QAKIGLAQMKLQQ 462 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHh
Confidence 32222211 112 2388899999999 9999999999999987765544 3333333334444
Q ss_pred CCCCcHHHHHHhHhHHhh
Q psy1863 406 LPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 406 ~~~~ea~~~~~~~l~~~~ 423 (425)
....+|..++++++++.+
T Consensus 463 g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 463 EDIDEAITLFEESADLAR 480 (514)
T ss_dssp TCHHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 578899999999988755
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=8.6e-26 Score=207.56 Aligned_cols=269 Identities=11% Similarity=0.033 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
.++.+.+|..++..|++++|+.+|++++ |.++.++..++.++...|++++|+..++++++.+|.++.++..+|.++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 3455788999999999999999999998 8888899999999999999999999999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 212 ARE-DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 212 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (425)
..| ++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.+
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHH
Q psy1863 291 NENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAV 363 (425)
Q Consensus 291 ~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 363 (425)
+++ +++..|+++ +..++.+ ++++|..+++++++..|....... .+....++..+|.
T Consensus 182 ~~~-al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~la~ 244 (330)
T 3hym_B 182 FSQ-ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT----------------VDKWEPLLNNLGH 244 (330)
T ss_dssp HHH-HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT----------------TTTCCHHHHHHHH
T ss_pred HHH-HHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc----------------ccHHHHHHHHHHH
Confidence 999 999999998 7777777 999999999999998765332111 1122467888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhccCCccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 364 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 364 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
++...|++++|+..++++.+..|..+. ....+...........+|..++++++++.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchH---HHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999887765443 333333333334477899999999887654
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=5.5e-26 Score=212.58 Aligned_cols=233 Identities=14% Similarity=0.085 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-----
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL----- 206 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----- 206 (425)
...+..+|.++...|++++|+..|++++ |..+.++..+|.+|...|++++|+..|+++++.+|.+..++..+
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 178 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence 3445788999999999999999999998 88899999999999999999999999999999998876665544
Q ss_pred -----HHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 207 -----GNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 207 -----a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
|.++...|++++|+.+|++++..+|+ ++.++.++|.++...|++++|+.+|+++++..|+++.++..+|.++.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchh
Q psy1863 280 ITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS 352 (425)
Q Consensus 280 ~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (425)
..|++++|+.+|++ +++.+|+++ +..+|.+ ++++|..+|++++++.|......... ...
T Consensus 259 ~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------~~~ 324 (365)
T 4eqf_A 259 NGDRSEEAVEAYTR-ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP-------------HPA 324 (365)
T ss_dssp HTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----------------------
T ss_pred HcCCHHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccc-------------hhh
Confidence 99999999999999 999999988 7888877 89999999999999998765422111 111
Q ss_pred hhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 353 LAQDLEINKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 353 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
....+|..++.++..+|+.+.|....++.
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 23578889999999999999988876653
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-25 Score=194.43 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
.+.++.+|..+...|++++|+..|++++ |.++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556889999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred Hh-----------cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 212 AR-----------EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 212 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
.. |++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++ +++.++.++|.++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHH
Q psy1863 281 TGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSA 323 (425)
Q Consensus 281 ~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~ 323 (425)
.|++++|+..|++ +++.+|+++ +..++.+ ++++|+..++++-
T Consensus 164 ~g~~~~A~~~~~~-al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 164 MGRLDEALAQYAK-ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred cCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999 999999998 7778777 8888988887763
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-25 Score=194.27 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=167.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.++.++|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863 243 AHKHL-----------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHR 309 (425)
Q Consensus 243 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~ 309 (425)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|++ +++++ +++ +..+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ-ALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHC-CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH-HHhcc-cchHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999999 99999 777 788888
Q ss_pred h-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 310 E-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 310 ~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
+ ++++|+..|+++++..|++.. ++..+|.++...|++++|+..++++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~-------------------------~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLD-------------------------LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHH-------------------------HHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChH-------------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7 999999999999999998653 4456689999999999999999886
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=1.2e-25 Score=210.27 Aligned_cols=230 Identities=11% Similarity=0.012 Sum_probs=202.6
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGE-VEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
...+++..+|.++...|++++|+..|++++ |.+..+|+.+|.++..+|+ +++|+..|++++.++|++..+|+++|.
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 346677889999999999999999999999 9999999999999999997 999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-TGDVEQA 287 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A 287 (425)
++..+|++++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.. .|..++|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 5655777
Q ss_pred -----HHHHHHHHHhcCcchH--HHHHHHh-------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh
Q psy1863 288 -----SDVNENLLLEAVRNDA--LSQLHRE-------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL 353 (425)
Q Consensus 288 -----~~~~~~~a~~~~p~~~--~~~l~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (425)
+.+|++ ++.++|++. |..++.+ ++++|+..+.++ +..|++..
T Consensus 255 ~~~~el~~~~~-Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~---------------------- 310 (382)
T 2h6f_A 255 VLEREVQYTLE-MIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY---------------------- 310 (382)
T ss_dssp HHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH----------------------
T ss_pred HHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH----------------------
Confidence 599999 999999998 8887776 367788777776 65665533
Q ss_pred hcHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhhccCCc
Q psy1863 354 AQDLEINKAVTFLRMN--------D-VSQAVDVLKSC-DEMTSSAA 389 (425)
Q Consensus 354 ~~~~~~~la~~~~~~g--------~-~~~A~~~~~~~-~~~~~~~~ 389 (425)
++..+|.+|..+| + +++|+++|+++ .+..|...
T Consensus 311 ---al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 311 ---LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp ---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred ---HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH
Confidence 3445567777764 3 58999999998 66665443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=4.6e-25 Score=206.22 Aligned_cols=262 Identities=15% Similarity=0.082 Sum_probs=224.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
...++.+|..+...|++++|+..|++++ |..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3445789999999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALY----------------NLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQ 273 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 273 (425)
..|++++|+..|++++...|.+...+. .++.++ ..|++++|+..|++++...|. .+.++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 999999999999999999998876654 567776 999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR 346 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 346 (425)
+|.++...|++++|+.+|++ ++...|+++ +..+|.+ ++++|+..++++++..|...
T Consensus 223 l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------- 285 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTA-ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI---------------- 285 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------
T ss_pred HHHHHHHcCCHHHHHHHHHH-HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------
Confidence 99999999999999999999 999999988 7788877 99999999999999988654
Q ss_pred HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc--------cchhHHHHHhhhccCcCCCCcHHHHHHhH
Q psy1863 347 NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA--------TNLSFIYFLVSSEFQYLPTSEVPIYLENL 418 (425)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~l~~~~~l~~~~~~~~~~~ea~~~~~~~ 418 (425)
.++..+|.+|...|++++|+..|+++.+..|... ........+..........+++..+..+.
T Consensus 286 ---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 286 ---------RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 3456678899999999999999999987776551 11233333333333334677888888777
Q ss_pred hHHhh
Q psy1863 419 LTVLQ 423 (425)
Q Consensus 419 l~~~~ 423 (425)
++.+.
T Consensus 357 l~~~~ 361 (368)
T 1fch_A 357 LSTLL 361 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=1.2e-25 Score=210.26 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=207.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH-------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV------- 204 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 204 (425)
...+..+|.++...|++++|+..|++++ |..+.++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 4566889999999999999999999998 889999999999999999999999999999999999877664
Q ss_pred ---------HHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 205 ---------NLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 205 ---------~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
.++.++ ..|++++|+.+|++++..+|+ ++.++..+|.++...|++++|+..|++++...|+++.++..
T Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 566666 999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhH
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIR 346 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 346 (425)
+|.++...|++++|+.+|++ +++..|+++ +..+|.+ ++++|..+++++++..|........
T Consensus 257 l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------- 324 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRR-ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE----------- 324 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc-----------
Confidence 99999999999999999999 999999988 7788877 9999999999999998876332111
Q ss_pred HhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 347 NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
..+....++..+|.++..+|++++|..++++..
T Consensus 325 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 325 ---GGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ---ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 122335678889999999999999999887653
No 23
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=4.5e-25 Score=197.35 Aligned_cols=241 Identities=16% Similarity=0.146 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGN 208 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 208 (425)
+..+..|..++..|++++|+..|++++ |.++.++..+|.++...|++++|+..++++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 445788999999999999999999998 88888999999999999999999999999999 4433 455999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (425)
++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.+++.+|......+++++|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995555567999999
Q ss_pred HHHHHHHHhcCcchH--HHHHHHh-----h---HHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863 289 DVNENLLLEAVRNDA--LSQLHRE-----M---KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE 358 (425)
Q Consensus 289 ~~~~~~a~~~~p~~~--~~~l~~~-----~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (425)
..|++ +++.+|+++ +..++.+ + +++|+..++++++......... ......++
T Consensus 163 ~~~~~-a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~ 224 (272)
T 3u4t_A 163 SSFVK-VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-----------------KDELIEAN 224 (272)
T ss_dssp HHHHH-HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-----------------HHHHHHHH
T ss_pred HHHHH-HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-----------------hHHHHHHH
Confidence 99999 999999988 6667766 3 6678999999988764332211 01113567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchhHH
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFI 395 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 395 (425)
..+|.+|...|++++|++.++++.+..|.++.-...+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 7899999999999999999999988887766544443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=7e-25 Score=201.18 Aligned_cols=264 Identities=13% Similarity=0.070 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
..+.++.+|..+...|++++|+.+|++++ |..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34456888999999999999999999998 888999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNL--------------GL-AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
...|++++|+..+++++..+|.+...+..+ +. ++...|++++|+..+++++...|.++.++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999888777776 66 688899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863 276 SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS 348 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (425)
.++...|++++|+.++++ +++..|+++ +..++.+ ++++|+..++++++..|.+..
T Consensus 180 ~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------- 241 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRR-AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR----------------- 241 (327)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------
T ss_pred HHHHHhccHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------
Confidence 999999999999999999 999999988 7777777 899999999999999887543
Q ss_pred hchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---------chhHHHHHhhhccCcCCCCcHHHHHHhHh
Q psy1863 349 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---------NLSFIYFLVSSEFQYLPTSEVPIYLENLL 419 (425)
Q Consensus 349 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~l~~~~~l~~~~~~~~~~~ea~~~~~~~l 419 (425)
.+..+|.++...|++++|+..++++.+..|.... .......+..........++|..++++.+
T Consensus 242 --------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 242 --------VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455678888888888888888888776655211 22333333333333346667777777776
Q ss_pred HHhh
Q psy1863 420 TVLQ 423 (425)
Q Consensus 420 ~~~~ 423 (425)
+..+
T Consensus 314 ~~~~ 317 (327)
T 3cv0_A 314 EPFA 317 (327)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6554
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=1e-24 Score=200.09 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=200.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---------
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL--------- 206 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------- 206 (425)
..+|.++...|++++|+..+++++ |..+.++..+|.++...|++++|+..+++++..+|.+...+..+
T Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 567889999999999999999998 88899999999999999999999999999999999988877776
Q ss_pred -----HH-HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 207 -----GN-CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 207 -----a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
+. ++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 66 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh
Q psy1863 281 TGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL 353 (425)
Q Consensus 281 ~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (425)
.|++++|+.++++ +++..|+++ +..++.+ ++++|...++++++..|......... ....
T Consensus 219 ~~~~~~A~~~~~~-a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------~~~~ 284 (327)
T 3cv0_A 219 GNRPQEALDAYNR-ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA-------------SREA 284 (327)
T ss_dssp TTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC------------------CCTH
T ss_pred cCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc-------------hhhc
Confidence 9999999999999 999999988 7777777 89999999999999988743221100 0111
Q ss_pred hcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863 354 AQDLEINKAVTFLRMNDVSQAVDVLKSCDEM 384 (425)
Q Consensus 354 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 384 (425)
...++..++.++..+|++++|...++++...
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2456778999999999999999998876443
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=2e-24 Score=181.58 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
+.+++.+|.++...|++++|+..|++++ |.++.++..+|.+|...|++++|+..+.+++...|.++.++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5677999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
..++++.|...+.+++..+|+++.++..+|.++..+|++++|+..|+++++.+|.++.+++++|.+|..+|++++|+.+|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcchHH
Q psy1863 292 ENLLLEAVRNDAL 304 (425)
Q Consensus 292 ~~~a~~~~p~~~~ 304 (425)
++ +++++|+++.
T Consensus 165 ~~-al~~~p~~a~ 176 (184)
T 3vtx_A 165 KK-ALEKEEKKAK 176 (184)
T ss_dssp HH-HHHTTHHHHH
T ss_pred HH-HHhCCccCHH
Confidence 99 9999998773
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.5e-24 Score=206.55 Aligned_cols=288 Identities=12% Similarity=0.007 Sum_probs=211.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQ--GEVEQAEKMAEEACTADTYNSA 201 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~ 201 (425)
...+.++|.+|..+|++++|+.++++++ +..+.++..+|.++... +++++|+.+|+++++++|+++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4456789999999999999999999987 34578888888877664 5799999999999999999999
Q ss_pred HHHHHHHHHHH---hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 202 AFVNLGNCAMA---REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 202 ~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
++..+|.++.. .+++++|+..|+++++++|+++.++.++|..+.. .|++++|+.++++++..+|..+.++..+
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l 253 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 99999988665 4667889999999999999999999999887765 4678899999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh------------------------hHHHHHHHHHHHHhhcCC
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE------------------------MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~------------------------~~~~A~~~~~~a~~~~~~ 328 (425)
|.+|...|++++|+..|++ +++.+|+++ +..+|.+ ..++|...+++++...|.
T Consensus 254 g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKK-ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCchHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999 999999988 6666654 357889999999999999
Q ss_pred chhhHhhchHHHHHHHhHHhhchhh------------hcHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhccC--------
Q psy1863 329 SIEDNFSNGYNWCVQSIRNSAHSSL------------AQDLEINKAVT-FLRMNDVSQAVDVLKSCDEMTSS-------- 387 (425)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~-------- 387 (425)
....+..+|..+...+....+...+ ...++..++.+ +...|++++|+..|+++.++.+.
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~ 412 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK 412 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 8888777775444333322222211 12344555543 45789999999999998765443
Q ss_pred -------------CccchhHHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 388 -------------AATNLSFIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 388 -------------~~~~l~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
.|.+...++.+...........+|+++++++++.-+
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 233334444443333334467889999999987643
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=3.5e-24 Score=200.29 Aligned_cols=199 Identities=8% Similarity=-0.033 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863 137 LEINKAVTFLRMND-VSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA 212 (425)
Q Consensus 137 ~~~~~a~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (425)
.+..+|.++...|+ +++|+..|++++ |.++.+|+++|.++...|++++|+..|+++++++|++..+|+++|.++..
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 34778999999997 999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKH-LNEYSDS-----LECFHKLQAIVPSMPEVLYQIASLYEITG--DV 284 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~ 284 (425)
+|++++|+.+|+++++++|++..+|+++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++
T Consensus 213 ~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 9999999999999999999999999999999999 5555888 59999999999999999999999999988 69
Q ss_pred HHHHHHHHHHHHhcCcchH--HHHHHHh--h------------HHHHHHHHHHH-HhhcCCchhhHhhch
Q psy1863 285 EQASDVNENLLLEAVRNDA--LSQLHRE--M------------KHEAEKCILTS-AKLIAPSIEDNFSNG 337 (425)
Q Consensus 285 ~~A~~~~~~~a~~~~p~~~--~~~l~~~--~------------~~~A~~~~~~a-~~~~~~~~~~~~~~~ 337 (425)
++|+..+.+ + +.+|+++ +..++.+ . .++|+.+|+++ ++++|.....|...+
T Consensus 293 ~~a~~~~~~-~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 293 PNLLNQLLD-L-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHHHHHH-H-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHH-h-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 999999999 7 8899888 6666666 1 37899999999 899998877666554
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.3e-23 Score=183.31 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-------SAAFVN 205 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~ 205 (425)
.+.+..+|..++..|++++|+.+|++++ ..++.++..+|.++...|++++|+..++++++..|.+ +.++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4566889999999999999999999998 5668899999999999999999999999999998877 789999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (425)
+|.++...|++++|+.+|++++...|. +.++...|++++|+..+++++..+|..+.++..+|.++...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999887 466778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863 286 QASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE 358 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (425)
+|+.+|++ +++.+|+++ +..+|.+ ++++|+.+++++++..|... ..+
T Consensus 157 ~A~~~~~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------~~~ 210 (258)
T 3uq3_A 157 NAVKAYTE-MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-------------------------RAY 210 (258)
T ss_dssp HHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------------------HHH
T ss_pred HHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH-------------------------HHH
Confidence 99999999 999999988 7778877 99999999999999988753 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSCDEMT 385 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 385 (425)
..+|.++...|++++|+..++++.+..
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 667899999999999999999997666
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=1.3e-23 Score=187.85 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=140.2
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHE 94 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 94 (425)
...++..|..+...|+|++|++.++++++.. |........++..|...|++. +
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~-------------------~ 55 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--------YNSPYIYNRRAVCYYELAKYD-------------------L 55 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------CCCSTTHHHHHHHHHHTTCHH-------------------H
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHhhHH-------------------H
Confidence 3568899999999999999999999988766 544444444444444444332 1
Q ss_pred HHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHH
Q psy1863 95 AEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATN 171 (425)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 171 (425)
+...+..+. .....+......+..+|.++...|++++|+..|++++ |..+.++..
T Consensus 56 A~~~~~~a~----------------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 113 (272)
T 3u4t_A 56 AQKDIETYF----------------------SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ 113 (272)
T ss_dssp HHHHHHHHH----------------------TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred HHHHHHHHH----------------------hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence 111111111 1001112223334556666666666666666666665 555566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC--
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-- 249 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-- 249 (425)
+|.++...|++++|+.+|+++++.+|.++.++..+|......+++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 114 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcch
Confidence 666666666666666666666666666666666666333333466666666666666666666666666666666665
Q ss_pred -HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 250 -YSDSLECFHKLQAIV---PS-----MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 250 -~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+++|+..|+++++.. |+ ...++..+|.+|...|++++|+.+|++ +++++|+++
T Consensus 194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~ 255 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN-ILALDPTNK 255 (272)
T ss_dssp SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCH
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCccHH
Confidence 555666666666554 32 124555666666666666666666666 666666655
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=2.7e-23 Score=174.66 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
+++.+|+++|.+|..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHH
Q psy1863 244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAE 316 (425)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~ 316 (425)
+...++++.|+..+.+++...|.++.++..+|.++..+|++++|+..|++ +++.+|+++ +..+|.+ ++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK-TISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH-HHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999998 8888888 999999
Q ss_pred HHHHHHHhhcCCchh
Q psy1863 317 KCILTSAKLIAPSIE 331 (425)
Q Consensus 317 ~~~~~a~~~~~~~~~ 331 (425)
.+|+++++++|.+..
T Consensus 162 ~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 162 KYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTHHHHH
T ss_pred HHHHHHHhCCccCHH
Confidence 999999999987643
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=3.8e-23 Score=181.35 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=174.6
Q ss_pred CcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1863 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL 206 (425)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 206 (425)
........++.+|..+...|++++|+..|++++ |..+.++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 334556777899999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 287 ASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
|+..+++ ++...|+++ +..++.+ ++++|..+++++++..|++.......+
T Consensus 178 A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 178 ALSQFAA-VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHH-HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 9999999 999999988 7777777 899999999999999999887665543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.1e-22 Score=175.58 Aligned_cols=179 Identities=9% Similarity=0.008 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMT-------SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
..+|.++...|++++|+..+++++ |.. +.++..+|.++...|++++|+.+|++++...|. +.
T Consensus 42 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~ 113 (258)
T 3uq3_A 42 NNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------AD 113 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hH
Confidence 344555555555555555555555 222 455555566666666666666666665555554 33
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (425)
++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc
Q psy1863 289 DVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI 326 (425)
Q Consensus 289 ~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~ 326 (425)
.++++ +++.+|+++ +..+|.+ ++++|..+++++++..
T Consensus 194 ~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 194 ADCNK-AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 55555 555555555 4444444 5555555555555555
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=6.5e-22 Score=174.74 Aligned_cols=199 Identities=19% Similarity=0.191 Sum_probs=188.1
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
....++.+|..+...|++++|+..|++++ |..+.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 36778899999999999999999999998 888999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHh--cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863 211 MAREDYVKGKELYVHALD--NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (425)
...|++++|+.+|++++. ..|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 289 DVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 289 ~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
.++++ +++..|.++ +..++.+ ++++|..+++++++..|.+....
T Consensus 196 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 196 QYYDL-FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHH-HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHH-HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999 999999888 5566555 99999999999999999877543
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=1.4e-21 Score=169.11 Aligned_cols=200 Identities=16% Similarity=0.090 Sum_probs=185.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.....++.+|..+...|++++|+..+++++ |..+.++..+|.++...|++++|+.++++++..+|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 345667899999999999999999999998 88899999999999999999999999999999999999999999999
Q ss_pred HHHh-cCHHHHHHHHHHHHh--cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy1863 210 AMAR-EDYVKGKELYVHALD--NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 210 ~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (425)
+... |++++|+.++++++. ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 999999999999999 6777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc-chH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhH
Q psy1863 287 ASDVNENLLLEAVR-NDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 287 A~~~~~~~a~~~~p-~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
|+..+++ +++..| .++ +..++.+ +.++|..+++.+.+..|++....
T Consensus 166 A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 166 ADYYFKK-YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHH-HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHH-HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999 999999 777 4444433 88899999999999999887644
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.3e-21 Score=170.42 Aligned_cols=201 Identities=12% Similarity=0.110 Sum_probs=132.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT-YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
.++.+++.+|.+++..|++++|+..|+++++.+| .+..+++++|.++...|++++|+.+|++++..+|+++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3456677777777777777777777777777776 666677777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc--hH--HHHHHHhh
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMP-------EVLYQIASLYEITGDVEQASDVNENLLLEAVRN--DA--LSQLHREM 311 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~--~~--~~~l~~~~ 311 (425)
++..+|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++ +++.+|+ ++ +..+|.+-
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH-ATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH-HHhcCCCcccHHHHHHHHHHH
Confidence 77777777777777777777777766 4567777777777777777777777 7777777 55 66666665
Q ss_pred HHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccc
Q psy1863 312 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATN 391 (425)
Q Consensus 312 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 391 (425)
...+...+.++..+.+...... .+......+.+++|+..++++.++.|.++..
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKY---------------------------ASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 5555555555555544432111 1111223455677777777776666555443
Q ss_pred h
Q psy1863 392 L 392 (425)
Q Consensus 392 l 392 (425)
.
T Consensus 217 ~ 217 (228)
T 4i17_A 217 K 217 (228)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=2.3e-22 Score=190.89 Aligned_cols=274 Identities=14% Similarity=0.058 Sum_probs=213.8
Q ss_pred HHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHH
Q psy1863 12 EQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREM 91 (425)
Q Consensus 12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~ 91 (425)
+..+..+...|..+...|++++|++.+++++.+. |..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~~----------------------------------- 81 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG--------TED----------------------------------- 81 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CSC-----------------------------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--------ccC-----------------------------------
Confidence 4567888999999999999999999998887643 110
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------
Q psy1863 92 KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--------- 162 (425)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--------- 162 (425)
......++..+|.++...|++++|+..+++++
T Consensus 82 ---------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 82 ---------------------------------------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 00011233667888888899999999888887
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcC-----------------HHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSAAFVNLGNCAMARED-----------------YVKG 219 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A 219 (425)
+..+.++..+|.+|...|++++|+.++++++.. .|....++.++|.++...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 455678889999999999999999999998887 45566788899999999999 8999
Q ss_pred HHHHHHHHhcC------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHH
Q psy1863 220 KELYVHALDND------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------EVLYQIASLYEITGDVEQA 287 (425)
Q Consensus 220 ~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A 287 (425)
+.++++++.+. +....++.++|.++...|++++|+.++++++.+.|... .++..+|.++...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 99998888763 33456888899999999999999999999988876433 3788899999999999999
Q ss_pred HHHHHHHHHhcCcch------H--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhh
Q psy1863 288 SDVNENLLLEAVRND------A--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 354 (425)
Q Consensus 288 ~~~~~~~a~~~~p~~------~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (425)
+.++++ ++...|.. . +..++.+ ++++|..++++++...+.... ....
T Consensus 283 ~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~ 342 (411)
T 4a1s_A 283 AEHYKR-TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-------------------RIGE 342 (411)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-------------------hHHH
Confidence 999999 88876643 1 5566666 888899998888877543221 1112
Q ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863 355 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 355 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 387 (425)
..++..+|.+|...|++++|+..++++.++...
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 356778999999999999999999999765543
No 38
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=2e-22 Score=175.46 Aligned_cols=196 Identities=10% Similarity=0.044 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
.+.++.+|..++..|++++|+..|++++ | .++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 3667899999999999999999999999 5 88899999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q psy1863 211 MAREDYVKGKELYVHALDNDATCI-------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQIASLYEIT 281 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 281 (425)
..+|++++|+..|+++++.+|+++ .++.++|.++...|++++|+..|+++++.+|+ ++.++.++|.++...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999998 67999999999999999999999999999999 999999999999876
Q ss_pred CCHHHHHHHHHHHHHhcCcchH--HHHHHHh---hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863 282 GDVEQASDVNENLLLEAVRNDA--LSQLHRE---MKHEAEKCILTSAKLIAPSIEDNFSN 336 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~ 336 (425)
|+ ..+.+ +..+.+.++ +...... .+++|+.++++++++.|++......+
T Consensus 167 ~~-----~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 167 GA-----DVLRK-ATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HH-----HHHHH-HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HH-----HHHHH-HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 54 45666 777766655 2222222 88999999999999999987655443
No 39
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1e-22 Score=204.77 Aligned_cols=169 Identities=19% Similarity=0.240 Sum_probs=162.5
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
-..+.+.++|.++..+|++++|+..|++++ |.++.+++++|.+|..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346777999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
+..+|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcch
Q psy1863 290 VNENLLLEAVRND 302 (425)
Q Consensus 290 ~~~~~a~~~~p~~ 302 (425)
.+++ ++++.|+.
T Consensus 167 ~~~k-al~l~~~~ 178 (723)
T 4gyw_A 167 RMKK-LVSIVADQ 178 (723)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHhChhH
Confidence 9999 99886654
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.9e-22 Score=188.52 Aligned_cols=229 Identities=17% Similarity=0.138 Sum_probs=166.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAA 202 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 202 (425)
+..+|.++...|++++|+.++++++ +..+.++..+|.++...|++++|+.++++++...|.. ..+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 3566778888888888888887776 3446677788888888888888888888888775432 346
Q ss_pred HHHHHHHHHHhcC--------------------HHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 203 FVNLGNCAMARED--------------------YVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 203 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
+..+|.++...|+ +++|+.++++++.+ .|....++.++|.++...|++++|+.+
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7788888888888 88888888888766 333456777888888888888888888
Q ss_pred HHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch------H--HHHHHHh-----hHHHHHH
Q psy1863 257 FHKLQAIVPSMPE------VLYQIASLYEITGDVEQASDVNENLLLEAVRND------A--LSQLHRE-----MKHEAEK 317 (425)
Q Consensus 257 ~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~------~--~~~l~~~-----~~~~A~~ 317 (425)
+++++...|.... ++..+|.++...|++++|+.++++ ++...|.. . +..+|.+ ++++|..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK-TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8888877554332 777888888888888888888888 77765543 1 5555555 7788888
Q ss_pred HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
++++++...+..... +....++..+|.+|...|++++|+..++++.+..+
T Consensus 289 ~~~~a~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 289 YHLKHLAIAQELNDR-------------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 888877765432211 11134566788888888999999988888876543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=8.7e-22 Score=176.04 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=193.3
Q ss_pred HHHHcCCHHHHHHHHHhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy1863 144 TFLRMNDVSQAVDVLKSCD-------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY 216 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 216 (425)
.....|++++|+..|++++ |..+.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445678999999999988 356889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy1863 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296 (425)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~ 296 (425)
++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++..|+++.....++.+ ...|++++|+..+.+ ++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~-~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ-HF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999999999998777666654 666999999999999 99
Q ss_pred hcCcchH-HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCC
Q psy1863 297 EAVRNDA-LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMND 370 (425)
Q Consensus 297 ~~~p~~~-~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 370 (425)
...|++. ...++.. +.++|+..+.+++...|... +....++..+|.+|...|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA---------------------EHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH---------------------HHHHHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccccc---------------------ccccHHHHHHHHHHHHcCC
Confidence 9988877 3333333 77888888888876654311 1113567889999999999
Q ss_pred HHHHHHHHHHHHhhccCCccch
Q psy1863 371 VSQAVDVLKSCDEMTSSAATNL 392 (425)
Q Consensus 371 ~~~A~~~~~~~~~~~~~~~~~l 392 (425)
+++|+..|+++....|......
T Consensus 231 ~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHH
Confidence 9999999999987776554433
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=3.9e-22 Score=183.06 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=180.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAA 202 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 202 (425)
+..+|.++...|++++|+.++++++ +..+.++..+|.++...|++++|+.+++++++..|.. ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 3677888889999999999988876 3456788899999999999999999999988876433 347
Q ss_pred HHHHHHHHHHhcC--------------------HHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 203 FVNLGNCAMARED--------------------YVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 203 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
+..+|.++...|+ +++|+.++++++.. .|....++.++|.++...|++++|+.+
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8889999999999 99999999988876 233466888999999999999999999
Q ss_pred HHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch------H--HHHHHHh-----hHHHHHH
Q psy1863 257 FHKLQAIVPSM------PEVLYQIASLYEITGDVEQASDVNENLLLEAVRND------A--LSQLHRE-----MKHEAEK 317 (425)
Q Consensus 257 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~------~--~~~l~~~-----~~~~A~~ 317 (425)
+++++...|.. ..++..+|.++...|++++|+.++++ ++...|.. . +..++.+ ++++|..
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK-TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99998875532 23788899999999999999999999 88776543 1 5556665 8889999
Q ss_pred HHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 387 (425)
++++++...+..... .....++..+|.+|...|++++|+..++++.++.+.
T Consensus 285 ~~~~a~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDR-------------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCH-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCc-------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 998888775433211 112346778999999999999999999999765543
No 43
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1.4e-22 Score=203.81 Aligned_cols=167 Identities=18% Similarity=0.228 Sum_probs=161.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|.++.++++||.++..+|++++|+.+|+++++++|++..+++++|.++..+|++++|+.+|+++++++|+++.+++++|.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEA 315 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A 315 (425)
++..+|++++|+++|+++++++|++..+++++|.++..+|++++|+..|++ +++++|+++ +.+++.+ ++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT-ALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999 8888887 88999
Q ss_pred HHHHHHHHhhcCCch
Q psy1863 316 EKCILTSAKLIAPSI 330 (425)
Q Consensus 316 ~~~~~~a~~~~~~~~ 330 (425)
.+.+++++++.|+..
T Consensus 165 ~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 165 DERMKKLVSIVADQL 179 (723)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhHH
Confidence 999999999876554
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.3e-21 Score=176.85 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG--NCAMA 212 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~ 212 (425)
...++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..++++++.+|++.......+ .++..
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC
Confidence 45566777777777777777777776 666777777777777777777777777777777776654433322 22334
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ-ASDVN 291 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~ 291 (425)
.|++++|+.+|+++++.+|+++.+++++|.++..+|++++|+..|++++..+|+++.++.++|.++...|+..+ +..++
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 46777777777777777777777777777777777777777777777777777777777777777777777654 45666
Q ss_pred HHHHHhcCcchH
Q psy1863 292 ENLLLEAVRNDA 303 (425)
Q Consensus 292 ~~~a~~~~p~~~ 303 (425)
++ +++.+|+++
T Consensus 259 ~~-~~~~~P~~~ 269 (291)
T 3mkr_A 259 SQ-LKDAHRSHP 269 (291)
T ss_dssp HH-HHHHCTTCH
T ss_pred HH-HHHhCCCCh
Confidence 77 777777777
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.4e-20 Score=168.49 Aligned_cols=218 Identities=17% Similarity=0.160 Sum_probs=195.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.+.++.+|..+...|++++|+.+|++++ +..+.+++.+|.++.. .|++++|+.+|+++++.+ ++.+++.+|.+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 83 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 4456889999999999999999999999 8889999999999999 999999999999999885 89999999999
Q ss_pred HHH----hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q psy1863 210 AMA----REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI- 280 (425)
Q Consensus 210 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 280 (425)
+.. .+++++|+.+|++++... ++.++.++|.+|.. .|++++|+.+|+++++.. ++.+++.+|.++..
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcC
Confidence 999 999999999999999874 79999999999999 999999999999999976 68899999999999
Q ss_pred ---cCCHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHh
Q psy1863 281 ---TGDVEQASDVNENLLLEAVRNDALSQLHRE---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS 348 (425)
Q Consensus 281 ---~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (425)
.+++++|+.+|++ +++..+...+..+|.+ ++++|+.+++++++..|
T Consensus 160 ~~~~~~~~~A~~~~~~-a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--------------------- 217 (273)
T 1ouv_A 160 RGTPKDLKKALASYDK-ACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--------------------- 217 (273)
T ss_dssp SSSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---------------------
T ss_pred CCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---------------------
Confidence 9999999999999 9988655446666655 78999999999987644
Q ss_pred hchhhhcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcc
Q psy1863 349 AHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 349 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~ 386 (425)
...+..+|.+|.. .+++++|+.+|+++.+..+
T Consensus 218 ------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 218 ------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp ------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 2345678899998 9999999999999976654
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=1.1e-21 Score=172.10 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=167.5
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
...+.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEA 315 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A 315 (425)
++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++ +++..|+++ +..++.+ ++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR-AVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999888 7777776 88999
Q ss_pred HHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863 316 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 390 (425)
+..++++++..|... .++..+|.+|...|++++|+..++++.+..|..+.
T Consensus 179 ~~~~~~~~~~~~~~~-------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHA-------------------------DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHCTTCH-------------------------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCcccH-------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999999888653 34567789999999999999999999877765544
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=1.4e-20 Score=170.05 Aligned_cols=243 Identities=11% Similarity=0.033 Sum_probs=198.9
Q ss_pred HHHHHHHHHh-cCCcch-hhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863 118 YNWCVQSIRN-SAHSSL-AQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195 (425)
Q Consensus 118 ~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 195 (425)
|..+++.... ....+. ..+....++.+|+..|+++.|+..++..-+....++..++..+...|++++|++.+++.+..
T Consensus 15 y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 15 YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR 94 (291)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Confidence 5555555433 222222 23455777999999999999998876644667788889999999999999999999999876
Q ss_pred --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 196 --DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 196 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
+|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..++++++.+|++......
T Consensus 95 ~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~ 169 (291)
T 3mkr_A 95 SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA 169 (291)
T ss_dssp CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence 599999999999999999999999999998 8899999999999999999999999999999999987654443
Q ss_pred HH--HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHH
Q psy1863 274 IA--SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQS 344 (425)
Q Consensus 274 la--~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 344 (425)
.+ .++...|++++|+..|++ +++..|+++ +..+|.+ ++++|+..+++++..+|.+..
T Consensus 170 ~a~~~l~~~~~~~~eA~~~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~------------- 235 (291)
T 3mkr_A 170 TAWVSLAAGGEKLQDAYYIFQE-MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE------------- 235 (291)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------
T ss_pred HHHHHHHhCchHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------
Confidence 33 333345899999999999 999999998 7777777 999999999999999998764
Q ss_pred hHHhhchhhhcHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhccCCccc
Q psy1863 345 IRNSAHSSLAQDLEINKAVTFLRMNDVSQ-AVDVLKSCDEMTSSAATN 391 (425)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 391 (425)
++.++|.++...|++.+ +..+++++.+..|..|.-
T Consensus 236 ------------~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 236 ------------TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp ------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 34556788888999976 568889998888776643
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=9e-21 Score=163.89 Aligned_cols=201 Identities=16% Similarity=0.079 Sum_probs=182.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hH
Q psy1863 243 AHKHL-NEYSDSLECFHKLQA--IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MK 312 (425)
Q Consensus 243 ~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~ 312 (425)
++... |++++|+..+++++. ..|....++..+|.++...|++++|+.++++ +++..|+++ +..++.+ ++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR-SLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999999 6667789999999999999999999999999 999999988 7777776 89
Q ss_pred HHHHHHHHHHHhhcC-CchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863 313 HEAEKCILTSAKLIA-PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA 389 (425)
Q Consensus 313 ~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 389 (425)
++|...++++++..| ..... +..++.++...|++++|...++.+.+..|..+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADD-------------------------LLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHH-------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCCHHH-------------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999988 65432 23456788899999999999999876665444
No 49
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=1.9e-20 Score=176.29 Aligned_cols=224 Identities=13% Similarity=0.176 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------H
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN-------S 200 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 200 (425)
.++.+|..+...|++++|+..|++++ +..+.+++.+|.+|...|++++|+.++.+++++.+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 34568999999999999999999997 2356899999999999999999999999999885433 4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQA-----IV-PSMP 268 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~ 268 (425)
.++.++|.++...|++++|+.+|++++.+.|.. ..++.++|.+|..+|++++|+.++++++. .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 579999999999999999999999999885432 46899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H-----HHHHHHh-----h---HHHHHHHHHHHHhhcCCchhhH
Q psy1863 269 EVLYQIASLYEITGDVEQASDVNENLLLEAVRND--A-----LSQLHRE-----M---KHEAEKCILTSAKLIAPSIEDN 333 (425)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~-----~~~l~~~-----~---~~~A~~~~~~a~~~~~~~~~~~ 333 (425)
.++.++|.++..+|++++|..++++ +++..+.. + +..++.+ + ..+|+..+++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----------- 332 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSK-GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----------- 332 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-----------
Confidence 8999999999999999999999999 99885432 2 3444444 2 33444443332
Q ss_pred hhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q psy1863 334 FSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 387 (425)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 387 (425)
...+....++..+|.+|...|++++|+..++++.+....
T Consensus 333 ---------------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 333 ---------------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred ---------------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 111222456678999999999999999999999765543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=5e-21 Score=169.04 Aligned_cols=202 Identities=16% Similarity=0.077 Sum_probs=185.2
Q ss_pred cch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 163 EMT-SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 163 ~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
|.. +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 444 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hH
Q psy1863 242 LAHKHLNEYSDSLECFHKLQA--IVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MK 312 (425)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~ 312 (425)
.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+.++++ +++..|.++ +..++.+ ++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK-SLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999 8888899999999999999999999999999 999999988 7777776 89
Q ss_pred HHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863 313 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 313 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 390 (425)
++|...++++++..|.... .+..++.++...|++++|...++++.+..|..+.
T Consensus 192 ~~A~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNAR-------------------------SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHhCcCcHH-------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999998886543 3445678899999999999999999777655443
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=7.7e-22 Score=190.86 Aligned_cols=205 Identities=13% Similarity=0.062 Sum_probs=160.2
Q ss_pred CHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863 150 DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEV-EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225 (425)
Q Consensus 150 ~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (425)
.+++++..+.+.. +..+.+++.+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556666666555 66778888888888888888 8888888888888888888888888888888888888888888
Q ss_pred HHhcCcCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q psy1863 226 ALDNDATCIEALYNLGLAHKHL---------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT--------GDVEQAS 288 (425)
Q Consensus 226 al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~ 288 (425)
+++++|+ ..++.++|.++... |++++|+..|+++++++|+++.+++.+|.++... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888887 67888888888888 8888888888888888888888888888888887 8888888
Q ss_pred HHHHHHHHhcCc---chH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863 289 DVNENLLLEAVR---NDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE 358 (425)
Q Consensus 289 ~~~~~~a~~~~p---~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (425)
.+|++ +++++| +++ +.++|.+ ++++|+..|++++++.|.+.. .+
T Consensus 242 ~~~~~-al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------------------------a~ 295 (474)
T 4abn_A 242 SAYAQ-AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE-------------------------PQ 295 (474)
T ss_dssp HHHHH-HHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------HH
T ss_pred HHHHH-HHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------------------HH
Confidence 88888 888888 666 7777776 788888888888888877643 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy1863 359 INKAVTFLRMNDVSQAVDVLKSC 381 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~~~~ 381 (425)
..++.++...|++++|++.+.+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44566677777777777655443
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=3.7e-21 Score=186.10 Aligned_cols=186 Identities=15% Similarity=0.054 Sum_probs=174.6
Q ss_pred chhhHHHHHHHHHHHHcCCH-HHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1863 132 SLAQDLEINKAVTFLRMNDV-SQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLG 207 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (425)
+.....++.+|.++...|++ ++|+..|++++ |..+.+++.+|.+|...|++++|+.+|+++++.+|+ ..++.++|
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg 177 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLS 177 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence 34577889999999999999 99999999999 899999999999999999999999999999999999 79999999
Q ss_pred HHHHHh---------cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CC
Q psy1863 208 NCAMAR---------EDYVKGKELYVHALDNDATCIEALYNLGLAHKHL--------NEYSDSLECFHKLQAIVP---SM 267 (425)
Q Consensus 208 ~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~ 267 (425)
.++... |++++|+.+|+++++++|+++.+|.++|.++... |++++|+.+|+++++++| ++
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 999999 9999999999999999999999999999999999 999999999999999999 99
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHH
Q psy1863 268 PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCI 319 (425)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~ 319 (425)
+.+++++|.+|..+|++++|+..|++ +++++|+++ +..++.+ ++++|+..+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQ-AAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 999999998 7777766 555555543
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=8.7e-22 Score=186.91 Aligned_cols=269 Identities=14% Similarity=0.102 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS----SAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSA 201 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 201 (425)
...++.+|..+...|++++|+..|++++ |.++ .++..+|.++...|++++|+.++++++.. .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4455688999999999999999999999 5544 68999999999999999999999999988 566778
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDN------DATCIEALYNLGLAHKHLNE-----------------YSDSLECFH 258 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~ 258 (425)
++..+|.++...|++++|+.+|++++.. .|....++.++|.++...|+ +++|+.+++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 8999999999999999999999999998 55667899999999999999 999999999
Q ss_pred HHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHHH
Q psy1863 259 KLQAIVP------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKCI 319 (425)
Q Consensus 259 ~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~~ 319 (425)
+++.+.+ ....++..+|.++...|++++|+.++++ +++..|... +..++.+ ++++|+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE-RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9988642 3446899999999999999999999999 998876432 5666666 999999999
Q ss_pred HHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---chhHHH
Q psy1863 320 LTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIY 396 (425)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~ 396 (425)
++++...+..... .....++..+|.+|..+|++++|+..++++....+.... ......
T Consensus 287 ~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 287 KRTLALAVELGER-------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999886643211 112356778999999999999999999999766544322 222333
Q ss_pred HHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 397 FLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 397 ~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
.+...........+|..++++++++.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 333334444578899999999988754
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=184.57 Aligned_cols=269 Identities=14% Similarity=0.092 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT----SSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSA 201 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 201 (425)
...++.+|..+...|++++|+.+|++++ |.+ ..++..+|.++...|++++|+.++++++.. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3445788999999999999999999998 444 478999999999999999999999999877 344567
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNE--------------------YSDSLE 255 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 255 (425)
++..+|.++...|++++|+.++++++...|.. ..++.++|.++...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999986643 5589999999999999 999999
Q ss_pred HHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHH
Q psy1863 256 CFHKLQAIV------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAE 316 (425)
Q Consensus 256 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~ 316 (425)
.+.+++.+. |....++..+|.++...|++++|+.++++ +++..|..+ +..+|.+ ++++|.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999998873 33456899999999999999999999999 998765432 5666666 899999
Q ss_pred HHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---chh
Q psy1863 317 KCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLS 393 (425)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~ 393 (425)
.++++++...|..... .....++..+|.+|...|++++|+..++++....+.... ...
T Consensus 248 ~~~~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDR-------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcCc-------------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 9999999876543211 112356778999999999999999999999776554332 122
Q ss_pred HHHHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 394 FIYFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 394 ~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
....+...........+|..++++++++.+
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 333333333344478899999999988754
No 55
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=3.2e-19 Score=173.54 Aligned_cols=353 Identities=12% Similarity=0.093 Sum_probs=250.0
Q ss_pred HHHHHHHhhHHhc----cccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcch----hhhhcchhhcccchhHH
Q psy1863 15 IIGLIDESCICAR----NQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSN----INRKKNARAVRNDALSQ 86 (425)
Q Consensus 15 ~~~l~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~d~l~~ 86 (425)
+..+..-+..+.. .+++++|++.+++|.+.. .......++..|.. .+.+. .++.-
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~~~~-------~A~~~ 101 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------YTPAEYVLGLRYMNGEGVPQDYA-------QAVIW 101 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHH-------HHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCHH-------HHHHH
Confidence 4566777777777 899999999999886532 22344555555544 22222 11111
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--hchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH----cCCHHHHHHHHHh
Q psy1863 87 LHREMKHEAEKCILTSAKLIA--PSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKS 160 (425)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~ 160 (425)
+.+...............+.. .-+..++..+..|+...... . ..+..+.+|.+|.. .+++++|+.+|++
T Consensus 102 ~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 102 YKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 111100000000001111110 11134666677777766554 1 24566888999988 8899999999999
Q ss_pred cc-cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCc
Q psy1863 161 CD-EMTSSAATNLSFIYFL----QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDA 231 (425)
Q Consensus 161 ~~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 231 (425)
+. ..++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 177 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 177 AAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 98 7788999999999998 89999999999999875 578899999999987 88999999999999876
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCcch
Q psy1863 232 TCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT-----GDVEQASDVNENLLLEAVRND 302 (425)
Q Consensus 232 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~a~~~~p~~ 302 (425)
.++.+++++|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|++ +.+..+..
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~-a~~~~~~~ 329 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTK-SAEQGDAT 329 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH-HHHTTCHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH-HHhcCCHH
Confidence 567889999999998 89999999999999765 5788999999999988 899999999999 98876655
Q ss_pred HHHHHHHh--------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHH----HHhH-------HhhchhhhcHHHHHHHH
Q psy1863 303 ALSQLHRE--------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCV----QSIR-------NSAHSSLAQDLEINKAV 363 (425)
Q Consensus 303 ~~~~l~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~la~ 363 (425)
.+..+|.+ ++++|+.+|+++.+. .+......+|..+.. .... ..+...-.+..+.++|.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~ 407 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 56667666 678999999999887 445556666544333 1111 12222224677888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863 364 TFLR----MNDVSQAVDVLKSCDEMTSSAATNLSFIYFL 398 (425)
Q Consensus 364 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l 398 (425)
+|.. .+++++|+.+|+++....+..|.+....+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 9998 8999999999999987765434444444443
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.87 E-value=1.8e-20 Score=156.64 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=162.4
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.....+..+|..+...|++++|+..+++++ |..+.++..+|.++...|++++|+.+++++++..|.++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345667889999999999999999999998 78899999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
+...|++++|+.++++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcchH
Q psy1863 290 VNENLLLEAVRNDA 303 (425)
Q Consensus 290 ~~~~~a~~~~p~~~ 303 (425)
++++ +++..|+++
T Consensus 166 ~~~~-~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKK-ANELDEGAS 178 (186)
T ss_dssp HHHH-HHHHHHCCC
T ss_pred HHHH-HHHcCCCch
Confidence 9999 998887764
No 57
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=7.1e-21 Score=163.29 Aligned_cols=173 Identities=15% Similarity=0.077 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcC
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATN----------------LSFIYFLQGEVEQAEKMAEEACTAD 196 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~~~ 196 (425)
+..+..|..++..|++++|+..|++++ |.++.+++. +|.++...|++++|+..|+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345788999999999999999999998 888899999 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE--YSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
|+++.+++++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ ...+...+.+++...| ...+++.+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHH
Confidence 99999999999999999999999999999999999999999999999987764 4566777777754332 23467889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE 310 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~ 310 (425)
|.++...|++++|+.+|++ +++++|++. ...+..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~-al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQK-VILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHH-HTTTSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHH-HHHhCCCHHHHHHHHHH
Confidence 9999999999999999999 999999876 4444443
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=6e-22 Score=160.61 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=125.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863 141 KAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV 217 (425)
Q Consensus 141 ~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 217 (425)
+|.++...|++++|+..+++++ |..+.+++.+|.+|+..|++++|+.+|+++++++|+++.++.++|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 5777888889999999999988 7778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC-FHKLQAIVPSMPEVLYQIASLYEITGD 283 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (425)
+|+.+|+++++++|+++.++.++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999877765 589999999999999999988887775
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=3.7e-21 Score=176.52 Aligned_cols=267 Identities=14% Similarity=0.100 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMT----SSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSAAF 203 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 203 (425)
.++..|..+...|++++|+..|++++ |.+ ..++..+|.++...|++++|+.++++++.. .|....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34677999999999999999999998 444 578899999999999999999999999887 34556789
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNE--------------------YSDSLECF 257 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~ 257 (425)
..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999885533 4589999999999999 99999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHH
Q psy1863 258 HKLQAIV------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKC 318 (425)
Q Consensus 258 ~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~ 318 (425)
++++... |....++..+|.++...|++++|+.++++ +++..|... +..++.+ ++++|..+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998763 23456899999999999999999999999 998765432 5566665 89999999
Q ss_pred HHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc---chhHH
Q psy1863 319 ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFI 395 (425)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~ 395 (425)
+++++...+..... .....++..+|.++...|++++|+..++++....+.... .....
T Consensus 246 ~~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 246 YKKTLLLARQLKDR-------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhcch-------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99998876543211 112356778999999999999999999999765543322 12223
Q ss_pred HHHhhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 396 YFLVSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 396 ~~l~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
..+...........+|..++++++++.+
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3333333334478899999999988764
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.2e-19 Score=165.43 Aligned_cols=220 Identities=10% Similarity=0.004 Sum_probs=191.7
Q ss_pred HHHHHHHHhcc---cchHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q psy1863 152 SQAVDVLKSCD---EMTSSAATNLSFIYFL-------QGEV-------EQAEKMAEEACT-ADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 213 (425)
++|+..|++++ |.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 67889999998 9999999999999874 5885 999999999999 7999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q psy1863 214 EDYVKGKELYVHALDNDATCIE-ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI-TGDVEQASDVN 291 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 291 (425)
|++++|+..|+++++..|.++. +|.++|.++.+.|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999886 999999999999999999999999999999998888877776544 79999999999
Q ss_pred HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhc--CCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHH
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLI--APSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKA 362 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 362 (425)
++ +++.+|+++ |..++.+ ++++|...|++++... |... ...+|...+
T Consensus 193 ~~-al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-----------------------~~~l~~~~~ 248 (308)
T 2ond_A 193 EL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-----------------------SGEIWARFL 248 (308)
T ss_dssp HH-HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG-----------------------CHHHHHHHH
T ss_pred HH-HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH-----------------------HHHHHHHHH
Confidence 99 999999988 7777766 8999999999999863 2110 124566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhccCCccchhHH
Q psy1863 363 VTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFI 395 (425)
Q Consensus 363 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 395 (425)
..+...|++++|...++++.+..|..+......
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~ 281 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFREEYEGKETA 281 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccccccchHH
Confidence 888889999999999999988888766655443
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=1.7e-19 Score=169.39 Aligned_cols=221 Identities=11% Similarity=0.069 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-------NS 200 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 200 (425)
.++.+|..+...|++++|+..|++++ +..+.+++.+|.+|...|++++|+.+++++++..+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 45778999999999999999999997 346789999999999999999999999999987543 24
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDA------TCIEALYNLGLAHKHLNEYSDSLECFHKLQA-----IVPSMPE 269 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 269 (425)
.++.++|.++...|++++|+.+|++++.+.+ ....++.++|.+|..+|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5789999999999999999999999998733 2356899999999999999999999999999 7777788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H-----HHHHHHh-----h---HHHHHHHHHHHHhhcCCchhhHh
Q psy1863 270 VLYQIASLYEITGDVEQASDVNENLLLEAVRND--A-----LSQLHRE-----M---KHEAEKCILTSAKLIAPSIEDNF 334 (425)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~-----~~~l~~~-----~---~~~A~~~~~~a~~~~~~~~~~~~ 334 (425)
++..+|.++..+|++++|+.++++ +++..+.. + +..++.+ + ..+|+.++++
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~------------- 328 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEE-GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK------------- 328 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-------------
Confidence 999999999999999999999999 99985542 2 3333333 2 3344444333
Q ss_pred hchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy1863 335 SNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM 384 (425)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 384 (425)
....+....+...+|.+|...|++++|+..|+++...
T Consensus 329 -------------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 329 -------------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111122345678999999999999999999998543
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=5.5e-20 Score=164.24 Aligned_cols=215 Identities=11% Similarity=-0.040 Sum_probs=185.4
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 133 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.....+..+|.++...|++++|+..|++++ |..+.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 120 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 346677899999999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
+...|++++|+.+|++++..+|+++.....++.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|+.
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHH
Confidence 9999999999999999999999998777666654 6679999999999999999998776654 7777888899999999
Q ss_pred HHHHHHHhcCcch----H--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHH
Q psy1863 290 VNENLLLEAVRND----A--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLE 358 (425)
Q Consensus 290 ~~~~~a~~~~p~~----~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (425)
.+.+ ++...|.. + +..+|.+ ++++|..+|++++...|.+...
T Consensus 199 ~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------- 251 (275)
T 1xnf_A 199 RLKA-DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE-------------------------- 251 (275)
T ss_dssp HHHH-HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH--------------------------
T ss_pred HHHH-HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH--------------------------
Confidence 9999 99887753 3 6777777 9999999999999998865321
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q psy1863 359 INKAVTFLRMNDVSQAVDVL 378 (425)
Q Consensus 359 ~~la~~~~~~g~~~~A~~~~ 378 (425)
.+.++...|++++|++.+
T Consensus 252 --~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 --HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhhHHHH
Confidence 234566777788877766
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.3e-20 Score=166.06 Aligned_cols=169 Identities=15% Similarity=0.145 Sum_probs=154.0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFV 204 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 204 (425)
..+.++.+|..++..|++++|+..|++++ |.+ +.+++.+|.+++..|++++|+..|+++++.+|++ +.+++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45667899999999999999999999998 666 8999999999999999999999999999998854 57899
Q ss_pred HHHHHHHH--------hcCHHHHHHHHHHHHhcCcCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q psy1863 205 NLGNCAMA--------REDYVKGKELYVHALDNDATCIEAL-----------------YNLGLAHKHLNEYSDSLECFHK 259 (425)
Q Consensus 205 ~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~ 259 (425)
.+|.++.. .|++++|+..|++++..+|+++.+. +.+|.+|...|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 9999999999999999999875555 8889999999999999999999
Q ss_pred HHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCcchH
Q psy1863 260 LQAIVPS---MPEVLYQIASLYEIT----------GDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 260 al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+++..|+ .+.+++.+|.+|..+ |++++|+..|++ +++.+|+++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~-~~~~~p~~~ 229 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER-LLQIFPDSP 229 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH-HHHHCTTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH-HHHHCCCCh
Confidence 9999998 457899999999977 899999999999 999999887
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=1.4e-18 Score=155.34 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=185.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcCcHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDATCIEALY 238 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (425)
|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.. ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 56788999999999999999999999999998 8889999999999999 999999999999999985 799999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh
Q psy1863 239 NLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVRNDALSQLHRE 310 (425)
Q Consensus 239 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~ 310 (425)
++|.+|.. .+++++|+.+|++++... ++.+++.+|.+|.. .+++++|+.+|++ +++..+...+..++.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK-ACDLNDGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHH-HHhcCcHHHHHHHHHH
Confidence 99999999 999999999999999874 89999999999999 9999999999999 9998765556666655
Q ss_pred ---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHh----cCCHHHHHHH
Q psy1863 311 ---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDV 377 (425)
Q Consensus 311 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 377 (425)
++++|+.+|+++++..+ ...+..+|.+|.. .+++++|+.+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~---------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKD---------------------------SPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC---------------------------HHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 78999999999886532 2456678899999 9999999999
Q ss_pred HHHHHhhccCCccchhHHHHHhhhccC----cCCCCcHHHHHHhHhHHh
Q psy1863 378 LKSCDEMTSSAATNLSFIYFLVSSEFQ----YLPTSEVPIYLENLLTVL 422 (425)
Q Consensus 378 ~~~~~~~~~~~~~~l~~~~~l~~~~~~----~~~~~ea~~~~~~~l~~~ 422 (425)
|+++.+..+ + ...+.+...... .....+|..+++++++.-
T Consensus 209 ~~~a~~~~~--~---~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 209 YSKACELEN--G---GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTC--H---HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHhCCC--H---HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999976543 1 122222121222 347889999999988764
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=170.19 Aligned_cols=240 Identities=15% Similarity=0.156 Sum_probs=183.0
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA----- 195 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 195 (425)
+.....+..+|..+...|++++|+.++++++ +..+.++..+|.++...|++++|+.++++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4456778899999999999999999999987 334678899999999999999999999999987
Q ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q psy1863 196 ---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND--------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI- 263 (425)
Q Consensus 196 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 263 (425)
.|....++..+|.++...|++++|+.+|++++... |....++.++|.++...|++++|+.++++++..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999874 566788999999999999999999999999998
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-----------HHHHHHhhHHHHHHHHHHHHhh
Q psy1863 264 -------VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-----------LSQLHREMKHEAEKCILTSAKL 325 (425)
Q Consensus 264 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-----------~~~l~~~~~~~A~~~~~~a~~~ 325 (425)
.|....++..+|.++...|++++|+.++++ +++..|... +...+.. ......+......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE-ILTRAHEREFGSVDDENKPIWMHAEER--EECKGKQKDGTSF 260 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHHHC------CCHHHHHHHH--HHC-------CCS
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcCCCCCcchHHHHHHHHHH--HHhcCchhhHHHH
Confidence 666678899999999999999999999999 987655422 1111111 0000000000000
Q ss_pred cCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 326 IAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
.. ...++... ....+....++..+|.+|...|++++|+..++++.++.+
T Consensus 261 ~~---------a~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 261 GE---------YGGWYKAC---KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CC---------CC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HH---------HHHHHhhc---CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 00 00000000 012233456788899999999999999999999976654
No 66
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=2.5e-20 Score=168.66 Aligned_cols=195 Identities=16% Similarity=0.030 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----- 199 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 199 (425)
+.+.+...|.++...|++++|+..|.+++ +..+.++.++|.+|..+|++++|+.+|++++.+.|..
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34455666889999999999999999998 1236789999999999999999999999999987654
Q ss_pred -HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q psy1863 200 -SAAFVNLGNCAMAR-EDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE-- 269 (425)
Q Consensus 200 -~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 269 (425)
..++.++|.+|... |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++++...|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 46799999999996 99999999999999997753 567899999999999999999999999999987643
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-------HHHHHHh-------hHHHHHHHHHHHHhhcCCc
Q psy1863 270 -----VLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-------LSQLHRE-------MKHEAEKCILTSAKLIAPS 329 (425)
Q Consensus 270 -----~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-------~~~l~~~-------~~~~A~~~~~~a~~~~~~~ 329 (425)
++.++|.++..+|++++|+.+|++ +++++|+.. +..++.. ++.+|+..|.+++.++|..
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQE-GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHG-GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 678999999999999999999999 999999865 2233322 5778888888777766644
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=6.7e-20 Score=157.18 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHh
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVN----------------LGNCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 228 (425)
.+..+...|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCcchH-HH
Q psy1863 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD--VEQASDVNENLLLEAVRNDA-LS 305 (425)
Q Consensus 229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~a~~~~p~~~-~~ 305 (425)
++|+++.++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ ...+...+.+ ++...|... +.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~ 161 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK-LSSPTKMQYARY 161 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCCCchhHHHH
Confidence 9999999999999999999999999999999999999999999999999987764 4567778888 765555443 55
Q ss_pred HHHHh-----hHHHHHHHHHHHHhhcCCch
Q psy1863 306 QLHRE-----MKHEAEKCILTSAKLIAPSI 330 (425)
Q Consensus 306 ~l~~~-----~~~~A~~~~~~a~~~~~~~~ 330 (425)
.+|.. ++++|+.+|++++++.|+..
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 55554 89999999999999999753
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=2.6e-21 Score=156.88 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=123.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 250 (425)
.||.++...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+.+|+++++++|+++.+|.++|.+|...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhcCcchH
Q psy1863 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV-NENLLLEAVRNDA 303 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~a~~~~p~~~ 303 (425)
++|+.+|+++++++|+++.+++++|.++...|++++|... +++ +++++|+++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~-al~l~P~~~ 134 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER-AAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH-HHHHSTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHhCcCCH
Confidence 9999999999999999999999999999999999887765 589 999999998
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=1.9e-19 Score=160.05 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=154.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC---cHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT---CIEA 236 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~ 236 (425)
+..+..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++.+|+ .+.+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 7788999999999999999999999999999999999 899999999999999999999999999999874 4778
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q psy1863 237 LYNLGLAHKH--------LNEYSDSLECFHKLQAIVPSMPEVL-----------------YQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 237 ~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~ 291 (425)
++.+|.++.. .|++++|+..|++++...|+++.+. +.+|.+|...|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999 9999999999999999999887665 88999999999999999999
Q ss_pred HHHHHhcCcchH-----HHHHHHh---------------hHHHHHHHHHHHHhhcCCchhh
Q psy1863 292 ENLLLEAVRNDA-----LSQLHRE---------------MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 292 ~~~a~~~~p~~~-----~~~l~~~---------------~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
++ +++..|+++ +..+|.+ ++++|+..|+++++..|++...
T Consensus 172 ~~-~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 172 EA-VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HH-HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HH-HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 99 999999843 5566554 4588999999999999987643
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=3.5e-19 Score=167.55 Aligned_cols=190 Identities=13% Similarity=0.100 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------S 200 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 200 (425)
.+..+|.++...|++++|+..+.+++ +..+.++..+|.+|...|++++|+.+|+++++..|.. .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 34667788888888888888888877 1234577788888888888888888888888765432 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALD-----ND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-----SMPE 269 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~ 269 (425)
.++.++|.+|..+|++++|+.+|++++. .+ |..+.++.++|.++..+|++++|+.++++++.+.+ ....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4677888888888888888888888887 45 66677888888888888888888888888877632 2233
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCC
Q psy1863 270 VLYQIASLYEITGD---VEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 270 ~~~~la~~~~~~g~---~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~ 328 (425)
.+..+|.++...|+ +++|+..+++ . ...|... +..+|.+ ++++|..++++++++...
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~-~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLES-K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667778888887 6777777776 4 2222222 5556666 778888888888776544
No 71
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1.5e-19 Score=141.60 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|..+.++..+|..++..|+|++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 77788888889999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (425)
++..+|++++|+..|+++++++|++..++..++.|+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999998888888888763
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=3.9e-19 Score=154.38 Aligned_cols=167 Identities=12% Similarity=0.107 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---AFVN 205 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 205 (425)
.+.++.+|..++..|++++|+..|++++ |.. +.+++.+|.+++..|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3456889999999999999999999998 443 578999999999999999999999999999999864 7899
Q ss_pred HHHHHHH------------------hcCHHHHHHHHHHHHhcCcCcHHHH-----------------HHHHHHHHHcCCH
Q psy1863 206 LGNCAMA------------------REDYVKGKELYVHALDNDATCIEAL-----------------YNLGLAHKHLNEY 250 (425)
Q Consensus 206 la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~la~~~~~~g~~ 250 (425)
+|.++.. .|++++|+..|+++++.+|+++.++ ..+|.+|...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 9999876 5799999999999999999886543 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch
Q psy1863 251 SDSLECFHKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLLLEAVRND 302 (425)
Q Consensus 251 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~ 302 (425)
++|+..|+++++..|+++ .+++.+|.++..+|++++|+..++. +....|++
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~-l~~~~~~~ 217 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI-IAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHCCSCC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH-HHhhCCCc
Confidence 999999999999999876 6799999999999999999999999 88887765
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=7.4e-19 Score=146.78 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
...++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHH
Q psy1863 245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEK 317 (425)
Q Consensus 245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~ 317 (425)
...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++ +++..|+++ +..++.+ ++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI-ALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999988 7777776 8999999
Q ss_pred HHHHHHhhcCCchh
Q psy1863 318 CILTSAKLIAPSIE 331 (425)
Q Consensus 318 ~~~~a~~~~~~~~~ 331 (425)
+++++++..|++..
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999999887654
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=5.8e-19 Score=159.69 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC----
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQ-GEVEQAEKMAEEACTADTYN---- 199 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~---- 199 (425)
....+.++|.++...|++++|+.+|++++ + ..+.++.++|.+|... |++++|+.+|++++++.|..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 35566899999999999999999999998 2 1256899999999996 99999999999999998754
Q ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 200 --SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE-------ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 200 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
..++.++|.++..+|++++|+.+|++++...|++.. ++.++|.++..+|++++|+.+|++++.++|+....
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 467899999999999999999999999999887543 68899999999999999999999999999976653
Q ss_pred -----HHHHHHHHH--HcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 271 -----LYQIASLYE--ITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 271 -----~~~la~~~~--~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+..++..+. ..+++++|+..|++ ++.++|...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~-~~~l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDN-FMRLDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTT-SSCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhcc-CCccHHHHH
Confidence 455666664 45789999999999 999888776
No 75
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2.3e-17 Score=160.44 Aligned_cols=292 Identities=12% Similarity=0.054 Sum_probs=213.8
Q ss_pred hhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH----cCCHHHHHHHHHhcc-cchHHHHHHHHHHHHH----cCCH
Q psy1863 112 DNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCD-EMTSSAATNLSFIYFL----QGEV 182 (425)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~----~g~~ 182 (425)
.++..+..|+...... . .....+.+|.+|.. .+++++|+.+|+++. ..++.+++.+|.+|.. .+++
T Consensus 93 ~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALK-G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 3555566666665543 1 24556778888888 788888888888888 7778888888888887 7888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHH
Q psy1863 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSL 254 (425)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~ 254 (425)
++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 168 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 168 VMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 8888888888875 578888888888888 78889999999888875 467888888888887 78899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh----------hHHHHHHHHH
Q psy1863 255 ECFHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVRNDALSQLHRE----------MKHEAEKCIL 320 (425)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~----------~~~~A~~~~~ 320 (425)
.+|++++.. .++.+++.+|.+|.. .+++++|+.+|++ +.+..+.+.+..++.+ ++++|+.+|+
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~-a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK-SAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 999888765 567888899999888 8899999999999 8876544445555554 7888999999
Q ss_pred HHHhhcCCchhhHhhchHHHHHH---HhH-------HhhchhhhcHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcc
Q psy1863 321 TSAKLIAPSIEDNFSNGYNWCVQ---SIR-------NSAHSSLAQDLEINKAVTFLR----MNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~ 386 (425)
++.+..+ ......+|..+... ... ..+...-.+..+..+|.+|.. .+++++|+.+|+++....
T Consensus 321 ~a~~~~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 321 KSAEQGD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 9887643 34445555333221 011 122222356778889999998 899999999999986532
Q ss_pred CCccchhHHHHHhhhccC----cCCCCcHHHHHHhHhHHh
Q psy1863 387 SAATNLSFIYFLVSSEFQ----YLPTSEVPIYLENLLTVL 422 (425)
Q Consensus 387 ~~~~~l~~~~~l~~~~~~----~~~~~ea~~~~~~~l~~~ 422 (425)
+....+.+..-... .....+|..+++++++.-
T Consensus 398 ----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 22333333333333 567788888888888764
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.1e-18 Score=157.34 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHHH-------HcCCH-------HHHHHHHHhcc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863 134 AQDLEINKAVTFL-------RMNDV-------SQAVDVLKSCD----EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195 (425)
Q Consensus 134 ~~~~~~~~a~~~~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 195 (425)
..++++..|..+. ..|++ ++|+..|++++ |..+.+|..+|.++...|++++|...|+++++.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 3556677777665 45885 99999999998 778899999999999999999999999999999
Q ss_pred CCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH-LNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 196 ~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
.|.++. +|.++|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+.+|+++++.+|+++.+|..
T Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 208 (308)
T 2ond_A 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 208 (308)
T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999987 999999999999999999999999999999998888877766544 799999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc---Ccc-hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEA---VRN-DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~---~p~-~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~ 331 (425)
+|.++...|++++|+..|++ ++.. .|+ .. |..++.+ +.+.|...+.++++..|++..
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~-al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFER-VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHCCCHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 99999999999999999999 9995 554 33 6655555 889999999999999997653
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=7.2e-18 Score=165.62 Aligned_cols=212 Identities=11% Similarity=0.036 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHh-cCcCcHHHHHHHHHHHHHcC
Q psy1863 184 QAEKMAEEACTADTYNSAAFVNLGNCAMA-------REDYV-------KGKELYVHALD-NDATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g 248 (425)
.++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 44455555555555555555555555543 45544 55555555554 45555555555555555555
Q ss_pred CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh------hHHHHHHHH
Q psy1863 249 EYSDSLECFHKLQAIVPSMP-EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE------MKHEAEKCI 319 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~------~~~~A~~~~ 319 (425)
++++|...|+++++..|.++ .+|..+|.++...|++++|+..|++ +++..|.+. +...+.+ ++++|...|
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 55555555555555555543 3555555555555555555555555 555544433 1111111 455555555
Q ss_pred HHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCccchh-HH-HH
Q psy1863 320 LTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLS-FI-YF 397 (425)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~-~~ 397 (425)
+++++..|++. .+|..++.++...|++++|..+|+++....+..|.... .. .+
T Consensus 415 e~al~~~p~~~-------------------------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 415 ELGLKKYGDIP-------------------------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHTTCH-------------------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHCCCCH-------------------------HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 55555555443 45555666666667777777777776555444443211 11 11
Q ss_pred H-hhhccCcCCCCcHHHHHHhHhHHhh
Q psy1863 398 L-VSSEFQYLPTSEVPIYLENLLTVLQ 423 (425)
Q Consensus 398 l-~~~~~~~~~~~ea~~~~~~~l~~~~ 423 (425)
+ .-..+| ....+..+..++++.+|
T Consensus 470 ~~~e~~~G--~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 470 LAFESNIG--DLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHTH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHCc
Confidence 1 011223 44555556666655554
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1e-18 Score=158.80 Aligned_cols=173 Identities=15% Similarity=0.149 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMK 92 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~ 92 (425)
..+..+...|..+...|++++|++.+++++++.+.... ...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~-------------------------------- 65 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG-------HDH-------------------------------- 65 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-------SSS--------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC-------CCC--------------------------------
Confidence 45677899999999999999999999998876521110 000
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc----------
Q psy1863 93 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------- 162 (425)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------- 162 (425)
+.....+..+|.++...|++++|+.++++++
T Consensus 66 ---------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 66 ---------------------------------------PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 0011222455666666666666666666665
Q ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q psy1863 163 -EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN---- 229 (425)
Q Consensus 163 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 229 (425)
+....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+|++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2234556666666666666666666666666553 334455666666666666666666666666665
Q ss_pred ----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 230 ----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 230 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.|....++..+|.++...|++++|+.++++++..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666653
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=6.2e-18 Score=162.45 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=156.8
Q ss_pred HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhc---chhhcccchhHHHHHHHHHHH
Q psy1863 19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKK---NARAVRNDALSQLHREMKHEA 95 (425)
Q Consensus 19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~d~l~~~~~~~~~~~ 95 (425)
...|..+..+|++++|++.++++.+ +.......+++..|...|... .....+...+.. .+.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~----------~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A 71 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAE----------LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HTCCTGGGTCC---------------------------------C
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHH
Confidence 3457788999999999999988753 345677888999888777762 211112111111 0000
Q ss_pred HHHHHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcc-------------------------------hhhHHHHHHHHH
Q psy1863 96 EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS-------------------------------LAQDLEINKAVT 144 (425)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~a~~ 144 (425)
...+-............++..+..|+...+... .+. -.....+.+|.+
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANG-EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLL 150 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000000000000011123333444443333321 100 002233455555
Q ss_pred HHHcCCH----HHHHHHHHhcccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----
Q psy1863 145 FLRMNDV----SQAVDVLKSCDEMTSSAATNLSFIYFLQG---EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR---- 213 (425)
Q Consensus 145 ~~~~g~~----~~A~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 213 (425)
+...+.+ +.+..+++.+...++.+++.+|.+|...| ++++|+..|+++.+..|.....++++|.+|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 5555533 22333333333444446666666666666 666666666666666666666666666666444
Q ss_pred cCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHH
Q psy1863 214 EDYVKGKELYVHALDNDATCIEALYNLGLA-H--KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-----DVE 285 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~ 285 (425)
+++++|+.+|+++. |.++.+++++|.+ + ...|++++|+.+|+++.+. .++.+++++|.+|. .| +++
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHH
Confidence 46666666666655 5566666666665 3 3456666666666666543 35666666666665 34 666
Q ss_pred HHHHHHHHHHHhcCcchH--HHHHHHh---------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhh
Q psy1863 286 QASDVNENLLLEAVRNDA--LSQLHRE---------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 354 (425)
Q Consensus 286 ~A~~~~~~~a~~~~p~~~--~~~l~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (425)
+|+.+|++ +. |+++ ..+||.+ ++++|..+|+++.+.. .
T Consensus 305 ~A~~~~~~-Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---------------------------~ 353 (452)
T 3e4b_A 305 AAEAHFEK-AV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---------------------------Q 353 (452)
T ss_dssp HHHHHHHT-TT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---------------------------C
T ss_pred HHHHHHHH-Hh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---------------------------h
Confidence 66666666 55 4444 5555544 5556666666555422 2
Q ss_pred cHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q psy1863 355 QDLEINKAVTFLR----MNDVSQAVDVLKSCDE 383 (425)
Q Consensus 355 ~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 383 (425)
.....++|.+|.. ..++.+|+.+|+++..
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3445566677664 4578888888888743
No 80
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=3.9e-19 Score=139.31 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=110.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 191 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
++..++|+.+..+.++|..++..|+|++|+.+|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHR 309 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~ 309 (425)
++++|.++..+|++++|+..|++ +++++|+++ +..++.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~-al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYED-ALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-HHHHCcCCHHHHHHHHH
Confidence 99999999999999999999999 999999998 556654
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=3e-19 Score=180.21 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=158.2
Q ss_pred HHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy1863 146 LRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE 214 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (425)
...|++++|+..+++++ |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 78899999999999987 8889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (425)
++++|+..|+++++++|+++.++.++|.++..+|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~- 559 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE- 559 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhcCcchH--HHHHHHh
Q psy1863 295 LLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 295 a~~~~p~~~--~~~l~~~ 310 (425)
+++++|++. +.+++.+
T Consensus 560 al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 560 VPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp SCTTSTTHHHHHHHHHHH
T ss_pred hcccCcccHHHHHHHHHH
Confidence 999999988 7777776
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=1.7e-19 Score=161.30 Aligned_cols=217 Identities=15% Similarity=0.145 Sum_probs=165.7
Q ss_pred HcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q psy1863 147 RMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--------DTYNSAAFVNLG 207 (425)
Q Consensus 147 ~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la 207 (425)
..|++++|+.+|++++ |..+.++..+|.++...|++++|+.++++++.. .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4556666666666665 456788999999999999999999999999987 366678899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI--------VPSMPEVL 271 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 271 (425)
.++...|++++|+.+|++++.. +|....++.++|.++...|++++|+.++++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999988 4777889999999999999999999999999998 66677899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-----------HHHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhc
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA-----------LSQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSN 336 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-----------~~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~ 336 (425)
..+|.++...|++++|+.++++ +++..|... +..++.. ........+..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 239 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKE-ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS------------ 239 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH------------
Confidence 9999999999999999999999 988744322 2222221 00000000000000
Q ss_pred hHHHHHHHhHH-hhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy1863 337 GYNWCVQSIRN-SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE 383 (425)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 383 (425)
.... ....+....++..+|.+|..+|++++|+..++++.+
T Consensus 240 -------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 240 -------WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 011223346778899999999999999999999854
No 83
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=9.2e-20 Score=147.17 Aligned_cols=115 Identities=4% Similarity=-0.014 Sum_probs=67.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (425)
.+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++.+|.++|.++..+|++++|+.+|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 34445555555555555555555555555555555555555555555555555555555555555655555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 268 PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+.+++++|.+|..+|++++|+.+|++ ++++.|+.+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~-al~l~~~~~ 138 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFEL-VIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCHH
Confidence 55555555555555666656555555 555555544
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=1.8e-18 Score=144.15 Aligned_cols=159 Identities=9% Similarity=0.087 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-H
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM-A 212 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~ 212 (425)
..+.+|..+...|++++|+..|++++ |.++.+++.+|.++...|++++|+..+++++..+| ++.....++.+.. .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 34788999999999999999999999 99999999999999999999999999999999999 8877766665533 3
Q ss_pred hcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQASDV 290 (425)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~ 290 (425)
.++..+|+..++++++.+|+++.+++++|.++...|++++|+..|+++++.+|+. +.++..+|.++..+|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 3455568999999999999999999999999999999999999999999999975 66999999999999999999999
Q ss_pred HHHHHHh
Q psy1863 291 NENLLLE 297 (425)
Q Consensus 291 ~~~~a~~ 297 (425)
|++ ++.
T Consensus 167 y~~-al~ 172 (176)
T 2r5s_A 167 YRR-QLY 172 (176)
T ss_dssp HHH-HHH
T ss_pred HHH-HHH
Confidence 999 764
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.6e-18 Score=174.91 Aligned_cols=170 Identities=9% Similarity=0.015 Sum_probs=158.5
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEAC--------TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (425)
|.++.+++..| ...|++++|+..+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 66677777766 78999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--
Q psy1863 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-- 310 (425)
Q Consensus 235 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-- 310 (425)
.+++++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|++ +++.+|++. +.++|.+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~-al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT-VWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH-HHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH-HHHhCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999 999999998 8888888
Q ss_pred ---hHHHHHHHHHHHHhhcCCchhhHhhch
Q psy1863 311 ---MKHEAEKCILTSAKLIAPSIEDNFSNG 337 (425)
Q Consensus 311 ---~~~~A~~~~~~a~~~~~~~~~~~~~~~ 337 (425)
++++|+..|+++++++|.+...+...|
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHH
Confidence 999999999999999998766555443
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=5.5e-18 Score=147.09 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH---HHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDNDATCI---EALY 238 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~ 238 (425)
.+.+++.+|..++..|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++ .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 567899999999999999999999999999998764 7899999999999999999999999999999875 4889
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCC
Q psy1863 239 NLGLAHKH------------------LNEYSDSLECFHKLQAIVPSMPEVL-----------------YQIASLYEITGD 283 (425)
Q Consensus 239 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~ 283 (425)
.+|.++.. .|++++|+..|+++++..|+++.++ ..+|.+|...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999886 5799999999999999999887554 578999999999
Q ss_pred HHHHHHHHHHHHHhcCcchH-----HHHHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863 284 VEQASDVNENLLLEAVRNDA-----LSQLHRE-----MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~~~-----~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
+++|+..|++ +++..|+++ +..++.+ ++++|+..++.+....|++...
T Consensus 163 ~~~A~~~~~~-~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 163 WVAVVNRVEG-MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHH-HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHH-HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 9999999999 999999876 6667776 9999999999999888877653
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=3.8e-18 Score=152.55 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-------- 195 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 195 (425)
..++..+|.++...|++++|+.++++++ +..+.++..+|.++...|++++|+.++++++..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455788999999999999999998887 345678889999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
+|....++.++|.++...|++++|+.+|++++.. .|....++.++|.++...|++++|+.++++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666788999999999999999999999999988 6777888999999999999999999999999876
No 88
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=1.7e-18 Score=139.76 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=107.8
Q ss_pred HHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 156 DVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 156 ~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
..+++++ |.++.+++.+|.+++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 4455666 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy1863 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (425)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999765
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=1.5e-17 Score=156.20 Aligned_cols=239 Identities=13% Similarity=0.067 Sum_probs=176.5
Q ss_pred HHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHHHHHH
Q psy1863 19 IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKC 98 (425)
Q Consensus 19 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~ 98 (425)
.-.|..+...|+|++|++.+++|+++.+.+... +.......+++..|...|++. .+..+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~y~~~~~~~-------------------~A~~~ 163 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--IEKAEFHFKVAEAYYHMKQTH-------------------VSMYH 163 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCHH-------------------HHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHcCCcH-------------------HHHHH
Confidence 346777889999999999999998865211000 011112233344444433322 33333
Q ss_pred HHHhhhhhhhchhhhhhhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHH
Q psy1863 99 ILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAA 169 (425)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~ 169 (425)
+..+..+..... .+.......+..+|.++...|++++|+..|++++ +..+.++
T Consensus 164 ~~~al~~~~~~~------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 164 ILQALDIYQNHP------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHHHTST------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCC------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333322211000 1122345567899999999999999999999998 2345788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cCcHHHHHH
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACT-----ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND-----ATCIEALYN 239 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~ 239 (425)
.++|.+|..+|++++|+.++++++. .+|..+.++.++|.++...|++++|+.++++++.+. |.....+..
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 305 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999 778888999999999999999999999999999984 444566788
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 240 LGLAHKHLNE---YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 240 la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
++.++...|+ +.+|+..+++. ...|....++..+|.+|...|++++|..+|++ +++.
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~-al~~ 365 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRK-VLKA 365 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHH
Confidence 8999999998 88888888762 22334556788999999999999999999999 8765
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=8.1e-18 Score=166.71 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=139.5
Q ss_pred cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (425)
.|++++|+..|++++ |.++.++..+|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 478999999999998 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCcc
Q psy1863 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT---GDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 225 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~a~~~~p~ 301 (425)
++++.+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+ |++++|...+++ +++.+|+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~-al~~~p~ 160 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA-AVAQGVG 160 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH-HHHHTCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH-HHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999 9999998
Q ss_pred hH--HHHHH
Q psy1863 302 DA--LSQLH 308 (425)
Q Consensus 302 ~~--~~~l~ 308 (425)
+. +..++
T Consensus 161 ~~~~~~~l~ 169 (568)
T 2vsy_A 161 AVEPFAFLS 169 (568)
T ss_dssp CSCHHHHTT
T ss_pred ccChHHHhC
Confidence 76 55555
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=1.1e-17 Score=150.75 Aligned_cols=163 Identities=9% Similarity=0.048 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
..+..+.+|..+...|++++|+..|++++ |.++.++..+|.++...|++++|+..+++++..+|+........+..+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 44566888999999999999999999988 888899999999999999999999999999999897777777777778
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~ 288 (425)
...++.++|+..+++++..+|+++.+++++|.++...|++++|+..|.++++.+|++ ..++..++.++...|+.++|.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 888888889999999999999999999999999999999999999999999999987 788999999999999999999
Q ss_pred HHHHHHHHh
Q psy1863 289 DVNENLLLE 297 (425)
Q Consensus 289 ~~~~~~a~~ 297 (425)
..|++ ++.
T Consensus 276 ~~~r~-al~ 283 (287)
T 3qou_A 276 SXYRR-QLY 283 (287)
T ss_dssp HHHHH-HHH
T ss_pred HHHHH-HHH
Confidence 99888 664
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=4.9e-16 Score=145.38 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=171.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--------TYNSA 201 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 201 (425)
..+|.++...|++++|+..+.+++ + ....++..+|.++...|++++|+.++++++... |....
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 567888888999999999999887 1 123457789999999999999999999998764 33456
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH--
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT-----CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLY-- 272 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-- 272 (425)
++.++|.++...|++++|..++++++...|. ...++.++|.++...|++++|...+++++...+. .+..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 6788999999999999999999999988664 3567888999999999999999999999876432 222221
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhcCcchH------HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863 273 ---QIASLYEITGDVEQASDVNENLLLEAVRNDA------LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGY 338 (425)
Q Consensus 273 ---~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 338 (425)
.++.++...|++++|...+++ ++...|.++ +..++.+ ++++|...+++++...+.....
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~------ 289 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRH-TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM------ 289 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch------
Confidence 344557789999999999999 887766431 3445444 7888888888887664421100
Q ss_pred HHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 339 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
.....++..+|.++...|++++|...++++....+
T Consensus 290 -------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 290 -------------SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 11124566789999999999999999999865443
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=5.5e-17 Score=151.84 Aligned_cols=268 Identities=13% Similarity=0.009 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMT-----SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS----- 200 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----- 200 (425)
..++...+|.++...|++++|+..+++++ |.. ..++..+|.++...|++++|...+++++...|...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35566788999999999999999999987 222 24688999999999999999999999998765432
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----
Q psy1863 201 -AAFVNLGNCAMAREDYVKGKELYVHALDND--------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS----- 266 (425)
Q Consensus 201 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 266 (425)
.++.++|.++...|++++|+.++++++... |....++.++|.++...|++++|..++++++...|.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 347889999999999999999999999874 334667889999999999999999999999998875
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc--h-H-HH-----HHHHh-----hHHHHHHHHHHHHhhcCCchhh
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN--D-A-LS-----QLHRE-----MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~--~-~-~~-----~l~~~-----~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
...++..+|.++...|++++|..++++ ++...+. . . +. ..+.+ ++++|...+.+++...|....
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~- 250 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNR-LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH- 250 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch-
Confidence 245788999999999999999999999 8876322 2 1 11 12211 889999999988765543210
Q ss_pred HhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc---cchhHHHHHhhhccCcCCCC
Q psy1863 333 NFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLVSSEFQYLPTS 409 (425)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~l~~~~~~~~~~~ 409 (425)
. ....+..++.++...|++++|+..++++....+..+ ........+...........
T Consensus 251 -~-------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 251 -F-------------------LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp -G-------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -h-------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 0 012345688999999999999999999865544322 11112222222222334677
Q ss_pred cHHHHHHhHhHHhh
Q psy1863 410 EVPIYLENLLTVLQ 423 (425)
Q Consensus 410 ea~~~~~~~l~~~~ 423 (425)
+|..+++.++++.+
T Consensus 311 ~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 311 DAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.76 E-value=7.4e-17 Score=126.94 Aligned_cols=135 Identities=30% Similarity=0.441 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
.+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch
Q psy1863 247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND 302 (425)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~ 302 (425)
.|++++|+..+++++...|.++.++..+|.++...|++++|..++++ ++..+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK-ALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH-HHccCCCC
Confidence 99999999999999999999999999999999999999999999999 99888863
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=1.9e-16 Score=142.42 Aligned_cols=227 Identities=8% Similarity=-0.040 Sum_probs=182.9
Q ss_pred HHHcCCH-HHHHHHHHhcc---cchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHh-
Q psy1863 145 FLRMNDV-SQAVDVLKSCD---EMTSSAATNLSFIYFLQG--EVEQAEKMAEEACTADTYNSAAFVNLGNCA----MAR- 213 (425)
Q Consensus 145 ~~~~g~~-~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~- 213 (425)
....|.+ ++|+.++.+++ |.+..+|+..+.++...| ++++++.+++.++..+|.+..+|+..+.++ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence 3444544 68999999998 999999999999999999 999999999999999999999999999998 666
Q ss_pred --cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------
Q psy1863 214 --EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS--DSLECFHKLQAIVPSMPEVLYQIASLYEITGD------ 283 (425)
Q Consensus 214 --g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------ 283 (425)
+++++++.++.+++..+|.+..+|.+.+.+....|.++ ++++++.++++.+|.+..+|...+.+....|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999999999999999999999999998 99999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHhcCcchH--HHHHHHh------hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhc
Q psy1863 284 VEQASDVNENLLLEAVRNDA--LSQLHRE------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQ 355 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~~~--~~~l~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (425)
++++++++.+ ++..+|+|. |..++.+ ..+....++.+++... ...+-..
T Consensus 202 ~~eEl~~~~~-aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~s~ 258 (306)
T 3dra_A 202 IDEELNYVKD-KIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE----------------------KDQVTSS 258 (306)
T ss_dssp HHHHHHHHHH-HHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG----------------------GTEESCH
T ss_pred HHHHHHHHHH-HHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc----------------------CCCCCCH
Confidence 8999999999 999999988 6666554 1222333333333322 0011223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hccCCccchhHHHH
Q psy1863 356 DLEINKAVTFLRMNDVSQAVDVLKSCDE-MTSSAATNLSFIYF 397 (425)
Q Consensus 356 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~ 397 (425)
.++..++.+|.+.|+.++|+++|+.+.. .. |.......+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~D---pir~~yW~~ 298 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYN---PIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---GGGHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhccC---hHHHHHHHH
Confidence 4556688888899999999999999853 33 444444433
No 96
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.7e-16 Score=154.39 Aligned_cols=225 Identities=11% Similarity=0.010 Sum_probs=193.4
Q ss_pred HHHHHHHHhcc---cchHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q psy1863 152 SQAVDVLKSCD---EMTSSAATNLSFIYFL-------QGEVE-------QAEKMAEEACT-ADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 213 (425)
.+++..|++++ |.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|..+...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 47888999999 9999999999999986 79987 99999999997 8999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy1863 214 EDYVKGKELYVHALDNDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL-YEITGDVEQASDVN 291 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~ 291 (425)
|++++|...|+++++..|.++ .+|.++|.++.+.|++++|+..|+++++..|.....+...+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999885 6999999999999999999999999999999888887777665 45699999999999
Q ss_pred HHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHH
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVT 364 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 364 (425)
++ +++..|+++ |..++.+ +.++|...|++++...|.+.... ..+|...+..
T Consensus 415 e~-al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~---------------------~~lw~~~~~~ 472 (530)
T 2ooe_A 415 EL-GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS---------------------GEIWARFLAF 472 (530)
T ss_dssp HH-HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC---------------------HHHHHHHHHH
T ss_pred HH-HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH---------------------HHHHHHHHHH
Confidence 99 999999988 7777776 89999999999999876543210 2345555666
Q ss_pred HHhcCCHHHHHHHHHHHHhhccCCccchhHHHHH
Q psy1863 365 FLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL 398 (425)
Q Consensus 365 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~l 398 (425)
....|+.+.+..+++++.+..|..+.......|.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~ 506 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFREEYEGKETALLV 506 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHG
T ss_pred HHHcCCHHHHHHHHHHHHHHCchhccCchHHHHH
Confidence 6778999999999999988887655554544554
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=5.7e-17 Score=146.08 Aligned_cols=171 Identities=9% Similarity=-0.021 Sum_probs=156.3
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 153 QAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 153 ~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
.-...+...+|..+..+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 33444555558899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H--HHHHH
Q psy1863 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--A--LSQLH 308 (425)
Q Consensus 233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~--~~~l~ 308 (425)
........+..+...++.++|+..+++++..+|+++.+++++|.++...|++++|+..|.+ ++..+|++ . +..++
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~-~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG-HLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTGGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH-HHhcccccccchHHHHHH
Confidence 8888888888899999999999999999999999999999999999999999999999999 99999987 4 77777
Q ss_pred Hh-----hHHHHHHHHHHHHh
Q psy1863 309 RE-----MKHEAEKCILTSAK 324 (425)
Q Consensus 309 ~~-----~~~~A~~~~~~a~~ 324 (425)
.+ +.++|...|++++.
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 76 67788888888765
No 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=6.1e-18 Score=136.49 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+++.+++++|.++..+|++++|+.+|++ ++++.|+++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~ 123 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFL-AQELIANXP 123 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHTTCG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCcCCC
Confidence 7777777777777777777777777777 777766655
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=1.5e-17 Score=138.48 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
...+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999 8777666665533
Q ss_pred -HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch--H--HHHHHHh-----hHHHH
Q psy1863 246 -HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--A--LSQLHRE-----MKHEA 315 (425)
Q Consensus 246 -~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~--~--~~~l~~~-----~~~~A 315 (425)
..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++ +++.+|+. + +..++.+ +.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN-ILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH-HHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 333445689999999999999999999999999999999999999999 99999874 2 7777776 77889
Q ss_pred HHHHHHHHh
Q psy1863 316 EKCILTSAK 324 (425)
Q Consensus 316 ~~~~~~a~~ 324 (425)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988875
No 100
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=8.7e-18 Score=154.95 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=137.5
Q ss_pred cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---------------SAAFVNLGNC 209 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 209 (425)
.+++++|+..+++++ |..+.++..+|.+++..|++++|+..|++++.++|.+ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766 7788999999999999999999999999999999999 6899999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-H
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-S 288 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~ 288 (425)
+..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.++..+|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHh
Q psy1863 289 DVNENLLLE 297 (425)
Q Consensus 289 ~~~~~~a~~ 297 (425)
..|++ ++.
T Consensus 286 ~~~~~-~~~ 293 (336)
T 1p5q_A 286 KLYAN-MFE 293 (336)
T ss_dssp HHHHH-HHH
T ss_pred HHHHH-HHH
Confidence 56676 543
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=1.8e-17 Score=133.69 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=109.8
Q ss_pred HHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 156 DVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 156 ~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
..|++++ |.++.+++.+|.++...|++++|+..|++++..+|.++.+++++|.++...|++++|+.+|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3456666 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
++.+++++|.++..+|++++|+.+|++++++.|+++....
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999999999999999998776533
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.73 E-value=3.5e-16 Score=134.10 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV 217 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 217 (425)
++.+|..+...|++++|+..|+++++..+.+++.+|.++...|++++|+..|++++..+|.++.+++++|.++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 35667777777777777777777774466777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCcCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863 218 KGKELYVHALDNDATCI----------------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (425)
+|+..|+++++..|.+. .+++++|.++...|++++|+..|+++++..|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777665544 677777777777777777777777777777654
No 103
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.6e-16 Score=124.24 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=105.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|..+..+..+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASLYEI 280 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 280 (425)
++..+|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999998 8888888888877654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=1.9e-16 Score=156.91 Aligned_cols=157 Identities=12% Similarity=0.073 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258 (425)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 258 (425)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh--------hHHHHHHHHHHHHhhcCC
Q psy1863 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE--------MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~--------~~~~A~~~~~~a~~~~~~ 328 (425)
++++.+|+++.++.++|.++...|++++|+..|++ +++.+|+++ +..++.+ ++++|...++++++..|.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR-AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999 999999988 6667666 678999999999999998
Q ss_pred chhhHhhc
Q psy1863 329 SIEDNFSN 336 (425)
Q Consensus 329 ~~~~~~~~ 336 (425)
....+..+
T Consensus 161 ~~~~~~~l 168 (568)
T 2vsy_A 161 AVEPFAFL 168 (568)
T ss_dssp CSCHHHHT
T ss_pred ccChHHHh
Confidence 87655444
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=3.8e-16 Score=134.08 Aligned_cols=164 Identities=14% Similarity=0.099 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQG----EVEQAEKMAEEACTADTYNSAAFVNLGNC 209 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (425)
.+..+.+|.++...+++++|+.+|+++. ..++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++++|.+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 4556889999999999999999999999 8889999999999998 7 99999999999964 6789999999999
Q ss_pred HHH----hcCHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 210 AMA----REDYVKGKELYVHALDNDA--TCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 210 ~~~----~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
|.. .+++++|+.+|+++++..| .++.+++++|.+|.. .+++++|+.+|+++... |.++.+++++|.+|.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 988 8899999999999999988 359999999999999 88999999999999998 678889999999998
Q ss_pred Hc-C-----CHHHHHHHHHHHHHhcCcchH
Q psy1863 280 IT-G-----DVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 280 ~~-g-----~~~~A~~~~~~~a~~~~p~~~ 303 (425)
.. | ++++|+.+|++ +.+......
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~-A~~~g~~~A 202 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNV-SCLEGFDTG 202 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHH-HHHHTCHHH
T ss_pred cCCCCCCCCCHHHHHHHHHH-HHHcCCHHH
Confidence 74 3 89999999999 988765544
No 106
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=4e-15 Score=142.83 Aligned_cols=182 Identities=12% Similarity=0.006 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHhcc---cchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1863 137 LEINKAVTFLRMN---DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQ----GEVEQAEKMAEEACTADTYNSAAFVNL 206 (425)
Q Consensus 137 ~~~~~a~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 206 (425)
.++.+|.++...| ++++|+..|+++. +..+..++++|.+|... +++++|+.+|+++. |+++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 6689999999999 9999999999998 66677779999999765 79999999999998 9999999999
Q ss_pred HHH-H--HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863 207 GNC-A--MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-----EYSDSLECFHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 207 a~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (425)
|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .| ++++|+.+|+++. |.++.+++++|.+|
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 999 4 5789999999999999965 48999999999998 56 9999999999998 89999999999998
Q ss_pred HH----cCCHHHHHHHHHHHHHhcCcchHHHHHHHh---------hHHHHHHHHHHHHhhcCC
Q psy1863 279 EI----TGDVEQASDVNENLLLEAVRNDALSQLHRE---------MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 279 ~~----~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~---------~~~~A~~~~~~a~~~~~~ 328 (425)
.. ..++++|+.+|++ +.+........+||.+ ++.+|..+|+++.+..+.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~-Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLT-AARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHH-HHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HCCCCCCcCHHHHHHHHHH-HHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 87 3499999999999 9886554447777776 899999999999876543
No 107
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.72 E-value=4.8e-15 Score=133.96 Aligned_cols=190 Identities=10% Similarity=-0.027 Sum_probs=163.4
Q ss_pred HHHHHHHHHhcc---cchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHH
Q psy1863 151 VSQAVDVLKSCD---EMTSSAATNLSFIYFLQG--EVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED-YVKGKELYV 224 (425)
Q Consensus 151 ~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~ 224 (425)
+++++.++..++ |.+..+|...+.++...| .+++++.++.++++.+|.|..+|...+.+....|. +++++.++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 567888888888 999999999999999999 48999999999999999999999999999999998 699999999
Q ss_pred HHHhcCcCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------
Q psy1863 225 HALDNDATCIEALYNLGLAHKHL--------------NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT--------- 281 (425)
Q Consensus 225 ~al~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------- 281 (425)
+++..+|.+..+|.+++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 99999999999999999999887 5689999999999999999999998666665554
Q ss_pred --CCHHHHHHHHHHHHHhcCcchHHHHHHHh----------hHHHHHHHHHHHHhhcCCchhhHhhchHHHH
Q psy1863 282 --GDVEQASDVNENLLLEAVRNDALSQLHRE----------MKHEAEKCILTSAKLIAPSIEDNFSNGYNWC 341 (425)
Q Consensus 282 --g~~~~A~~~~~~~a~~~~p~~~~~~l~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 341 (425)
+.++++++++.+ +++..|++.|..++.+ ..++...++.+..+++|...+.+..++-.+.
T Consensus 250 ~~~~l~~el~~~~e-lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 250 KSTVLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 458899999999 9999999884333332 5568888999999999988776655543333
No 108
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=9.8e-17 Score=128.44 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|..+.+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.+++++|.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
++..+|++++|+.+|++++.+.|+++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 555555555555555555555544443
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.71 E-value=4.7e-16 Score=133.33 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
...++.+|.++...|++++|+..|++++ +| ++.+++++|.++...|++++|+.+|++++..+|+++.++.++|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4567899999999999999999999996 33 78999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 246 HLNEYSDSLECFHKLQAIVPSMP----------------EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..|++++|+..|+++++..|.+. .+++++|.++...|++++|+.+|++ +++..|++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~ 155 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL-ATSMKSEPR 155 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCSGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH-HHHcCcccc
Confidence 99999999999999999888776 9999999999999999999999999 999999764
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.71 E-value=7.1e-16 Score=126.34 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=122.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.++.++.++|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhc
Q psy1863 244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS--LYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
+...|++++|+.+|++++..+|.+..++..++. .+...|++++|+..+.+ +...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH-KRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc-hHHH
Confidence 999999999999999999999999988855544 48888999999999988 6543
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=5.7e-17 Score=129.82 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 187 KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++.+++.+|.++..+|++++|+.+|++ ++++.|+++
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~ 120 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYS-ARALAAAQP 120 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTCG
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCc
Confidence 999999999999999999999999999 999998877
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=1.7e-16 Score=144.51 Aligned_cols=167 Identities=14% Similarity=0.049 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C---
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY--N--- 199 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~--- 199 (425)
+.+.+...|.++...|++++|+..|.+++ .....++.++|.+|..+|++++|+.+|++++.+.+. +
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34445566888999999999999999988 233668899999999999999999999999988532 2
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q psy1863 200 -SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM----- 267 (425)
Q Consensus 200 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 267 (425)
..++.++|.+|.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+.+|++++.+.|.+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 4678999999998 99999999999999986643 5788999999999999999999999999986643
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 268 -PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 268 -~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
..++..+|.++..+|++++|+.+|++ ++ .+|+..
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~-al-~~p~~~ 228 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRE-SY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HT-TSTTST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH-Hh-CCCCCC
Confidence 34788899999999999999999999 99 888754
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=4.4e-15 Score=133.51 Aligned_cols=200 Identities=10% Similarity=-0.035 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHcC--CHHHHHHHHHhcc---cchHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHH
Q psy1863 135 QDLEINKAVTFLRMN--DVSQAVDVLKSCD---EMTSSAATNLSFIY----FLQ---GEVEQAEKMAEEACTADTYNSAA 202 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~ 202 (425)
..++..++.++...| ++++++..+..++ |.+..+|+..+.++ ... +++++++.++.++++.+|.+..+
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a 146 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence 345677899999999 9999999999999 99999999999999 777 89999999999999999999999
Q ss_pred HHHHHHHHHHhcCHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 203 FVNLGNCAMAREDYV--KGKELYVHALDNDATCIEALYNLGLAHKHLNE------YSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 203 ~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
|...+.+....|.++ +++.++.++++.+|.+..+|.+.+.+....|+ ++++++++.+++..+|++..+|+.+
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 999999999999999 99999999999999999999999999999988 9999999999999999999999999
Q ss_pred HHHHHHcCCHHH-HHHHHHHHHHhcC---cchH--HHHHHHh-----hHHHHHHHHHHHHh-hcCCchhhHhh
Q psy1863 275 ASLYEITGDVEQ-ASDVNENLLLEAV---RNDA--LSQLHRE-----MKHEAEKCILTSAK-LIAPSIEDNFS 335 (425)
Q Consensus 275 a~~~~~~g~~~~-A~~~~~~~a~~~~---p~~~--~~~l~~~-----~~~~A~~~~~~a~~-~~~~~~~~~~~ 335 (425)
+.++...|+... ...++.+ ++... |.++ +..++.+ +.++|+++|+.+.+ .+|.....|..
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQ-FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHT-TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 999999998555 5567777 77765 6666 6666666 88999999999997 78877665543
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.69 E-value=1.5e-15 Score=119.30 Aligned_cols=130 Identities=27% Similarity=0.398 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (425)
.++.+|..+...|++++|+..+++++ |..+.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45788999999999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999885
No 115
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.69 E-value=1.8e-14 Score=130.23 Aligned_cols=219 Identities=6% Similarity=-0.079 Sum_probs=183.8
Q ss_pred HHHcCCHH-HHHHHHHhcc---cchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 145 FLRMNDVS-QAVDVLKSCD---EMTSSAATNLSFIYFLQGE----------VEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 145 ~~~~g~~~-~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
....|.++ +|+.++.+++ |.+..+|+..+.+....|. +++++.++..++..+|.+..+|+..+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34566665 7999999998 9999999999999988776 78999999999999999999999999999
Q ss_pred HHhcC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------
Q psy1863 211 MARED--YVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECFHKLQAIVPSMPEVLYQIASLYEIT------ 281 (425)
Q Consensus 211 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 281 (425)
...|+ +++++.++.++++.+|.+..+|.+.+.+....|. ++++++++.+++..+|.+..+|..++.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 99994 9999999999999999999999999999999999 69999999999999999999999999999887
Q ss_pred --------CCHHHHHHHHHHHHHhcCcchH--HHHH-HHh---------------hHHHHHHHHHHHHhhcCCchhhHhh
Q psy1863 282 --------GDVEQASDVNENLLLEAVRNDA--LSQL-HRE---------------MKHEAEKCILTSAKLIAPSIEDNFS 335 (425)
Q Consensus 282 --------g~~~~A~~~~~~~a~~~~p~~~--~~~l-~~~---------------~~~~A~~~~~~a~~~~~~~~~~~~~ 335 (425)
+.++++++++.+ ++..+|+|. |..+ +.+ .++++++++.++++..|++.- ..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~-ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w--~l 275 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQN-AFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW--CL 275 (331)
T ss_dssp ----CCCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred ccccccchHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch--HH
Confidence 568999999999 999999999 5433 332 367999999999999998732 21
Q ss_pred chHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy1863 336 NGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTS 386 (425)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 386 (425)
.+...+. ...-..|..++...++.+..++.|
T Consensus 276 ~~~~~~~--------------------~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 276 LTIILLM--------------------RALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHH--------------------HHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHH--------------------HhhcccccHHHHHHHHHHHHHhCc
Confidence 1111110 011134667888888888877775
No 116
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=7.2e-14 Score=144.15 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY---------------- 198 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------- 198 (425)
..++..+|..+...|++++|+..|.++ +++..+..+|.++...|++++|+++|..+.+..++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 556678888888888888888888776 77788888888888888888888888777755532
Q ss_pred -----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 199 -----------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 199 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
+...+..+|..+...|+|++|+.+|.++ ..|..+|.++.++|++++|+++++++
T Consensus 1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 2233556777777777777777777764 36667777777777777777777766
No 117
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=7.2e-16 Score=120.77 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEA 236 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~ 236 (425)
+.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++ ..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888888888888888876654 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
+.++|.++..+|++++|+.+|++++...| ++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 77777888888888888888888877776 344433
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-16 Score=121.03 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=114.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
+..+.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|+++.++.++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (425)
++...|++++|+.+|++++..+|.+..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988764
No 119
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=1.3e-15 Score=119.14 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=116.1
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
+..+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (425)
++...|++++|+.+|++++...|+++.++..+|.++..+|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999988875
No 120
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=8.3e-16 Score=126.22 Aligned_cols=114 Identities=17% Similarity=0.030 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
..+..++.+|.+++..|++++|+.+|+++++.+|.++.+++++|.++...|++++|+.+|++++.++|+++.+++++|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy1863 244 HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (425)
+..+|++++|+.+|+++++++|++..+++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7777777777777777777777777766655544
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=1.1e-15 Score=131.19 Aligned_cols=169 Identities=13% Similarity=0.063 Sum_probs=149.8
Q ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHH
Q psy1863 153 QAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE----DYVKGKELYVHAL 227 (425)
Q Consensus 153 ~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al 227 (425)
+|+..|+++. ..++.+++.+|.+|...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4777888887 788999999999999999999999999999875 689999999999998 7 9999999999996
Q ss_pred hcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy1863 228 DNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEI----TGDVEQASDVNENLLLE 297 (425)
Q Consensus 228 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~ 297 (425)
. +.++.+++++|.+|.. .+++++|+.+|+++.+..| .++.++++||.+|.. .+++++|+.+|++ +.+
T Consensus 81 ~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~-A~~ 157 (212)
T 3rjv_A 81 E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG-SSS 157 (212)
T ss_dssp H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH-HHH
T ss_pred H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHH
Confidence 5 5789999999999998 8999999999999999887 358999999999999 8999999999999 998
Q ss_pred cCcchH--HHHHHHh-----------hHHHHHHHHHHHHhhcCC
Q psy1863 298 AVRNDA--LSQLHRE-----------MKHEAEKCILTSAKLIAP 328 (425)
Q Consensus 298 ~~p~~~--~~~l~~~-----------~~~~A~~~~~~a~~~~~~ 328 (425)
. |.++ ..+||.+ ++++|+.+|+++.+....
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8 3333 6666665 479999999999887543
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=5.2e-16 Score=141.26 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=143.9
Q ss_pred cCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVNLGNCAMAREDYVKGKE 221 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 221 (425)
.+++++|+.+|.++ |.+|...|++++|+..|.+++.+.+.. ..++.++|.+|..+|++++|+.
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46777777766654 788999999999999999999886532 4679999999999999999999
Q ss_pred HHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q psy1863 222 LYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 222 ~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 289 (425)
+|++++.+.+. ...++.++|.+|.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988532 25688999999999 99999999999999987643 5689999999999999999999
Q ss_pred HHHHHHHhcCcchH--------HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863 290 VNENLLLEAVRNDA--------LSQLHRE-----MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 290 ~~~~~a~~~~p~~~--------~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~ 331 (425)
+|++ ++.+.|++. +..++.+ ++++|..+|++++ ..|....
T Consensus 177 ~~~~-al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 177 SLQK-EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHH-HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9999 999866432 4444444 8999999999999 8887654
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=1.5e-17 Score=153.36 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=150.2
Q ss_pred cCCHHHHHHHHHh----cc---cchHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKS----CD---EMTSSAATNLSFIYF------------LQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 148 ~g~~~~A~~~~~~----~~---~~~~~~~~~lg~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
.+.+++|+..+.. ++ |.. ++...|.... .++++++|+..+++++..+|..+.++.++|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4467778877777 44 433 4555554432 4677888999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATC---------------IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
+++..|++++|+.+|++++.+.|++ ..++.++|.++..+|++++|+.+|+++++++|+++.++++
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHH-HHHHHHHHhh
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEA-EKCILTSAKL 325 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A-~~~~~~a~~~ 325 (425)
+|.++..+|++++|+..|++ +++++|++. +..++.+ ++++| ...|.+++..
T Consensus 236 lg~~~~~~g~~~~A~~~~~~-al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQK-VLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999998 7777776 55566 4466666554
No 124
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=2.3e-16 Score=133.84 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=124.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS----------------AA 202 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~ 202 (425)
+......|+++++.+.+.... +..+..+..+|..++..|++++|+..|++++...|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 445566777887777776655 56778899999999999999999999999999998887 88
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
+.++|.++...|++++|+.++++++..+|+++.+++++|.++..+|++++|+..|++++.++|++..++..++.++..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHH-HHHHH
Q psy1863 283 DVEQAS-DVNEN 293 (425)
Q Consensus 283 ~~~~A~-~~~~~ 293 (425)
+..++. ..|..
T Consensus 171 ~~~~~~~~~~~~ 182 (198)
T 2fbn_A 171 EARKKDKLTFGG 182 (198)
T ss_dssp HHHC--------
T ss_pred HHHHHHHHHHHH
Confidence 887776 34444
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=3.2e-15 Score=135.10 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HH
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SA 201 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 201 (425)
.....+..++..|++++|+..+.+++ + .....++.+|.++...|++++|+.++++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34677889999999999999999877 2 223456789999999999999999999999875443 56
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---hcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHAL---DNDATC----IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------MP 268 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al---~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 268 (425)
++.++|.+|...|++++|+.+|++++ ...|++ ..+++++|.+|..+|++++|+.++++++.+.+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 89999999999999999999999999 445553 368999999999999999999999999987542 26
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q psy1863 269 EVLYQIASLYEITGDVEQA-SDVNENLLLEA 298 (425)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A-~~~~~~~a~~~ 298 (425)
.+++++|.+|..+|++++| ..++++ ++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~-Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK-ASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH-HHHH
Confidence 7899999999999999999 788999 8765
No 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=1.1e-13 Score=142.73 Aligned_cols=213 Identities=11% Similarity=0.035 Sum_probs=162.8
Q ss_pred HcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863 147 RMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226 (425)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (425)
..|++++|+++++++ ..+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|+|++|+++|..+
T Consensus 1088 ~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677788888777775 66889999999999999999999999875 78889999999999999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHH
Q psy1863 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306 (425)
Q Consensus 227 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~ 306 (425)
.+..++ +.+-..+|.+|.+++++++ ++.|. .+.+...+..+|..+...|++++|..+|.+ +- .|..
T Consensus 1161 rk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k-A~------ny~r 1226 (1630)
T 1xi4_A 1161 RKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-VS------NFGR 1226 (1630)
T ss_pred Hhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-hh------HHHH
Confidence 988744 3333459999999999885 55442 233556777899999999999999999999 62 2555
Q ss_pred HHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhh-----hcHHHHHHHHHHHhcCCHHHHHH
Q psy1863 307 LHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL-----AQDLEINKAVTFLRMNDVSQAVD 376 (425)
Q Consensus 307 l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 376 (425)
++.+ ++++|++.+.++ .+...|...++..+..+....+.... .++....++..|...|.|++|+.
T Consensus 1227 LA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555 899999999998 33456655544333222222222111 34455578999999999999999
Q ss_pred HHHHHHhhc
Q psy1863 377 VLKSCDEMT 385 (425)
Q Consensus 377 ~~~~~~~~~ 385 (425)
+++.+..+.
T Consensus 1302 LlE~aL~Le 1310 (1630)
T 1xi4_A 1302 MLEAALGLE 1310 (1630)
T ss_pred HHHHHhccC
Confidence 999986554
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=1.1e-15 Score=127.12 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=99.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHcCCH--HHH
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA-HKHLNEY--SDS 253 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A 253 (425)
...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4467778888888888888888888888888888888888888888888888888888888888888 7778887 888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 254 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+..+++++..+|+++.+++.+|.++...|++++|+..|++ +++.+|+++
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~ 149 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK-VMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCTTS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH-HHhhCCCCc
Confidence 8888888888888888888888888888888888888888 888887766
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-15 Score=118.94 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
|..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC------cchH
Q psy1863 277 LYEITGDVEQASDVNENLLLEAV------RNDA 303 (425)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~a~~~~------p~~~ 303 (425)
++..+|++++|+..|++ +++++ |+++
T Consensus 81 ~~~~~~~~~~A~~~~~~-al~~~p~~~~~p~~~ 112 (126)
T 3upv_A 81 AQIAVKEYASALETLDA-ARTKDAEVNNGSSAR 112 (126)
T ss_dssp HHHHTTCHHHHHHHHHH-HHHHHHHHHTTTTHH
T ss_pred HHHHHhCHHHHHHHHHH-HHHhCcccCCchhHH
Confidence 99999999999999999 99999 7666
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.67 E-value=5.5e-16 Score=139.17 Aligned_cols=164 Identities=10% Similarity=0.069 Sum_probs=121.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
|..+.++..+|..++..|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++++|+++.+++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677888889999999999999999999999999888899999999999999999999999999999988889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh---hHHHHHH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE---MKHEAEK 317 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~---~~~~A~~ 317 (425)
++..+|++++|+..|+++++++|+++..+........ ...++...... .....|.++ ...++.+ ++++|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~i~~~l~~l~~~~~~~A~~ 156 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSI-EERRIHQESELHSYLTRLIAAERERELE 156 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHH-HHTCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888865322221211111 11222233333 344455544 4444444 7788888
Q ss_pred HHHHHHhhcCCch
Q psy1863 318 CILTSAKLIAPSI 330 (425)
Q Consensus 318 ~~~~a~~~~~~~~ 330 (425)
.++++++..|.+.
T Consensus 157 ~~~~al~~~p~~~ 169 (281)
T 2c2l_A 157 ECQRNHEGHEDDG 169 (281)
T ss_dssp TTSGGGTTTSCHH
T ss_pred HHHhhhccccchh
Confidence 8888888777553
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=9.7e-16 Score=120.04 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-------EVL 271 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~ 271 (425)
.+.++.++|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999988653 578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
.++|.++..+|++++|+.+|++ ++...|+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~k-al~~~~~~~ 117 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHR-SLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHHHSCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHhhCcCHH
Confidence 9999999999999999999999 999888654
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=3.2e-15 Score=135.08 Aligned_cols=159 Identities=11% Similarity=0.030 Sum_probs=135.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMT------SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAF 203 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 203 (425)
...+..++..|++++|+..+++++ +.. ...+..+|.++...|++++|+.++++++...+.. ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 456788999999999999999987 222 2244568999999999999999999999865332 3479
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDN-------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEV 270 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 270 (425)
.++|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++++++.+.+.. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999953 22346689999999999999999999999999886533 689
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Q psy1863 271 LYQIASLYEITG-DVEQASDVNENLLLEA 298 (425)
Q Consensus 271 ~~~la~~~~~~g-~~~~A~~~~~~~a~~~ 298 (425)
++++|.++..+| ++++|+.+|++ ++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~-Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKK-ASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHH-HHHH
Confidence 999999999999 57999999999 8865
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=8.4e-16 Score=137.96 Aligned_cols=185 Identities=12% Similarity=0.025 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
...+..+|..++..|++++|+..|++++ |.++.++.++|.++...|++++|+..++++++.+|+++.+++++|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456788999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVN 291 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (425)
.+|++++|+..|+++++++|+++..+........ +..++...........|.++.+...++.++ .|++++|+..+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999999998866322222222222 223333444444456778888888887765 69999999999
Q ss_pred HHHHHhcCcchH--HHHHHHh------hHHHHHHHHHHHHhh
Q psy1863 292 ENLLLEAVRNDA--LSQLHRE------MKHEAEKCILTSAKL 325 (425)
Q Consensus 292 ~~~a~~~~p~~~--~~~l~~~------~~~~A~~~~~~a~~~ 325 (425)
++ +++.+|++. ...++.+ .+++|...|.++.+.
T Consensus 159 ~~-al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QR-NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SG-GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred Hh-hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99 999999987 3333333 566788888877664
No 133
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=1e-15 Score=142.14 Aligned_cols=220 Identities=10% Similarity=0.093 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (425)
..++.+|.+.|++.++.++++. | +..+|..+|..++..|+|++|..+|.++ ..|..+|.++.++|+|++
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~~--p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFING--P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -----------CHHHHTTTTTC--C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHcC--C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHH
Confidence 3445555555555555444432 2 2235555555555555555555555544 245555555555555555
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
|++.++++ .++.+|...+.++...|+++.|..+... +..+ ++-...++.+|.+.|.+++|+.++++ ++.+
T Consensus 167 AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~-aL~l 236 (449)
T 1b89_A 167 AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEA-ALGL 236 (449)
T ss_dssp HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH-HTTS
T ss_pred HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHH-HhCC
Confidence 55555555 2455555555555555555555544443 1122 22233455555555555555555555 5555
Q ss_pred CcchH--HHHHHHh----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchh-----hhcHHHHHHHHHHHh
Q psy1863 299 VRNDA--LSQLHRE----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSS-----LAQDLEINKAVTFLR 367 (425)
Q Consensus 299 ~p~~~--~~~l~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~ 367 (425)
++.+. +..++.+ ++++-.+.++.-... ...++ ....+|..+..+|..
T Consensus 237 e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~----------------------ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 237 ERAHMGMFTELAILYSKFKPQKMREHLELFWSR----------------------VNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----------------------SCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------------hcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 55544 4444444 222222222211100 11111 235678889999999
Q ss_pred cCCHHHHHHHHHHHHhhccC------------CccchhHHHHHhhhccC
Q psy1863 368 MNDVSQAVDVLKSCDEMTSS------------AATNLSFIYFLVSSEFQ 404 (425)
Q Consensus 368 ~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~l~~~~~~ 404 (425)
.++|+.|+.+.-.- .+. .+.|....|-...-.++
T Consensus 295 ~~e~d~A~~tm~~h---~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 295 YEEYDNAIITMMNH---PTDAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp TTCHHHHHHHHHHS---TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHhC---ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 99999999866554 222 35566666655554554
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=1.7e-15 Score=126.00 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=116.8
Q ss_pred HHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCH--HH
Q psy1863 145 FLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC-AMAREDY--VK 218 (425)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 218 (425)
+...|++++|+..+++++ |.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456789999999999988 88999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
|+.+|++++..+|+++.++.++|.++...|++++|+..|++++..+|+++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999999999999999999999999999998765443
No 135
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=8.3e-16 Score=122.54 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTY-------NSA-----AFVNLGNCAMAREDYVKGKELYVHALDN---- 229 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 229 (425)
+..+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345667777777777777777777777777776 222 5555555555555555555555555555
Q ss_pred ---CcCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863 230 ---DATCIEAL----YNLGLAHKHLNEYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 230 ---~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (425)
+|+++.+| +++|.++..+|++++|+.+|++++++.|++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55555555 555555555555555555555555554443
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=1.9e-14 Score=111.39 Aligned_cols=117 Identities=30% Similarity=0.433 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
+.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
..|++++|+..+++++..+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999887654
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=1.8e-14 Score=110.34 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863 245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (425)
...|++++|+..++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999988888764
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=5.3e-15 Score=117.15 Aligned_cols=115 Identities=11% Similarity=0.156 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA 243 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 243 (425)
..+..+..+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|+..+++++..+|+++.+++++|.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q psy1863 244 HKHLNEYSDSLECFHKLQAIVPS-----MPEVLYQIASLY 278 (425)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 278 (425)
+...|++++|+..|++++...|+ +..+...+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666554 444444444443
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=4.3e-16 Score=149.69 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=127.5
Q ss_pred cCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---------------SAAFVNLGNC 209 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 209 (425)
.+++++|+..+..++ |..+.++..+|.+++..|++++|+..|+++++++|.+ ..+++++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345666776666665 7788899999999999999999999999999999998 6899999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
+..+|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred H
Q psy1863 290 V 290 (425)
Q Consensus 290 ~ 290 (425)
.
T Consensus 407 ~ 407 (457)
T 1kt0_A 407 R 407 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.63 E-value=8.3e-15 Score=128.75 Aligned_cols=231 Identities=12% Similarity=0.073 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhhCCCccccc-------chhcchhhhhcchhhcccc
Q psy1863 10 RMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNI-------ELTFSNINRKKNARAVRND 82 (425)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~d 82 (425)
.|+.++.+++..|+.+ ..+++.+|++.|.+++.++ |.....+..+ +.++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~d--------P~~~Daw~g~~a~g~~~~~~L~~~~r~~-------- 64 (282)
T 4f3v_A 2 HMTDRLASLFESAVSM-LPMSEARSLDLFTEITNYD--------ESACDAWIGRIRCGDTDRVTLFRAWYSR-------- 64 (282)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCCCHHHHHHHHHTG--------
T ss_pred CchHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhC--------hhhhHHHHhHHHccCCcHHHHHHHHHHH--------
Confidence 3678889999999987 6999999999999999988 4332333333 22222222211
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhchhhhhh-hhHHHHHHHHH-hcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy1863 83 ALSQLHREMKHEAEKCILTSAKLIAPSIEDNFS-NGYNWCVQSIR-NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKS 160 (425)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 160 (425)
+..........+-...+...+. .|. .. -........++.+..|..+...|++++|.+.|..
T Consensus 65 -----------~a~~~~~~~l~l~p~~l~a~~~~~g~------y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~ 127 (282)
T 4f3v_A 65 -----------RNFGQLSGSVQISMSTLNARIAIGGL------YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEA 127 (282)
T ss_dssp -----------GGTTHHHHTTTCCGGGGCCEEECCTT------TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTS
T ss_pred -----------HHHHHHHHHhcCChhhhhhhhccCCc------ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0001111111110011111111 010 00 0000112367778889999999999999999999
Q ss_pred cc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cC-
Q psy1863 161 CD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDND--AT- 232 (425)
Q Consensus 161 ~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~- 232 (425)
.+ |... +.+.+|.+++..|++++|+.+|+.+....+.. ..+++++|.++..+|++++|+.+|++++... |.
T Consensus 128 ~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~ 206 (282)
T 4f3v_A 128 APVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC 206 (282)
T ss_dssp SCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred HHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc
Confidence 88 7777 99999999999999999999999887653221 3589999999999999999999999998654 55
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy1863 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 233 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (425)
.+.+++++|.++..+|+.++|...|++++..+|+ ..+...|..
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 6779999999999999999999999999999998 776665543
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.63 E-value=3.8e-14 Score=128.61 Aligned_cols=164 Identities=8% Similarity=-0.052 Sum_probs=150.4
Q ss_pred HHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-CHH
Q psy1863 144 TFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQG-EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAR-E-DYV 217 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~ 217 (425)
+....+..++|+.++.+++ |.+..+|+..+.++...| .+++++.++++++..+|.+..+|+..+.++... + +++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3444556678999999999 999999999999999999 599999999999999999999999999999988 8 899
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYS--------DSLECFHKLQAIVPSMPEVLYQIASLYEITGD------ 283 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------ 283 (425)
+++.++.+++..+|.+..+|...+.+....|.++ ++++++.++++.+|.+..+|...+.++..++.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999999999999999999999999998888 99999999999999999999999999999887
Q ss_pred -HHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863 284 -VEQASDVNENLLLEAVRNDA--LSQLH 308 (425)
Q Consensus 284 -~~~A~~~~~~~a~~~~p~~~--~~~l~ 308 (425)
++++++++.+ ++..+|+|. |..+.
T Consensus 223 ~~~eELe~~~~-aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 223 SLQDELIYILK-SIHLIPHNVSAWNYLR 249 (349)
T ss_dssp HHHHHHHHHHH-HHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhCCCCHHHHHHHH
Confidence 7899999999 999999988 65543
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.63 E-value=2.7e-15 Score=119.58 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDAT-------CIE-----ALYNLGLAHKHLNEYSDSLECFHKLQAI---- 263 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 263 (425)
...+.++|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356889999999999999999999999999998 443 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 264 ---VPSMPEVL----YQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 264 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+|++..+| +++|.++..+|++++|+..|++ +++++|++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k-Alel~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK-VVEMIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH-HHhcCCCcH
Confidence 99999999 9999999999999999999999 999999887
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1.6e-14 Score=118.26 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
...+..+|..++..|++++|+..|++++ |..+.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556889999999999999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhh
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGL--AHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 263 (425)
..|++++|+.+|++++..+|.+..++..++. .+...|++++|+..+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999888855544 488899999999999987654
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.63 E-value=2.9e-15 Score=122.70 Aligned_cols=117 Identities=19% Similarity=0.184 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTA------------------DTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (425)
.+..+..+|..++..|++++|+..|.+++.. +|.+..++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3566777888888888888888888888877 5666678888888888888888888888888
Q ss_pred HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHc
Q psy1863 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP-EVLYQIASLYEIT 281 (425)
Q Consensus 227 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 281 (425)
+.++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877 5566666665544
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.63 E-value=3.7e-15 Score=115.58 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 169 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 248 (425)
++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q psy1863 249 EYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~ 267 (425)
++++|+..|+++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 6666666666666665544
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=1.3e-14 Score=119.09 Aligned_cols=114 Identities=23% Similarity=0.169 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
.+.++..++.+|.+++..|++++|+.+|++++.++|+++.++.++|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 276 SLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
.++..+|++++|+.+|++ +++++|+++ +...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEK-GIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH-HHHhCCCchHHHHHHHHH
Confidence 999999999999999999 999999987 5555443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.62 E-value=1.1e-15 Score=129.68 Aligned_cols=145 Identities=13% Similarity=0.016 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH----------
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI---------- 234 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------- 234 (425)
.+......+......|++++|.+.+.......+.....+..+|.+++..|++++|+.+|++++...|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3445566777888889999998888877777777788899999999999999999999999999998876
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHH
Q psy1863 235 ------EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQ 306 (425)
Q Consensus 235 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~ 306 (425)
.++.++|.++...|++++|+.++++++..+|+++.+++.+|.++..+|++++|+.+|++ +++++|+++ +..
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~ 161 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK-AASLNPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999 999999988 666
Q ss_pred HHHh
Q psy1863 307 LHRE 310 (425)
Q Consensus 307 l~~~ 310 (425)
++.+
T Consensus 162 l~~~ 165 (198)
T 2fbn_A 162 YELC 165 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=8.3e-15 Score=113.59 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (425)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcchH
Q psy1863 282 GDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 282 g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|++++|+..|++ +++.+|++.
T Consensus 99 g~~~~A~~~~~~-al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRA-WLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHH-HHC------
T ss_pred CCHHHHHHHHHH-HHHhCcCCC
Confidence 999999999999 999998753
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.59 E-value=2.1e-14 Score=121.78 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=127.1
Q ss_pred HHHcCCHHHHHH---HHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcC
Q psy1863 145 FLRMNDVSQAVD---VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA------DTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 145 ~~~~g~~~~A~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 215 (425)
++..|++++|.. .+....+..+.++..+|.++...|++++|+.++++++.. .|....++.++|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356799999999 443322467889999999999999999999999999983 45556789999999999999
Q ss_pred HHHHHHHHHHHHhc---Cc----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcC
Q psy1863 216 YVKGKELYVHALDN---DA----TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SM----PEVLYQIASLYEITG 282 (425)
Q Consensus 216 ~~~A~~~~~~al~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g 282 (425)
+++|+.++++++.. .+ ....++.++|.++...|++++|+.++++++...+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999988 33 2356789999999999999999999999997643 22 235689999999999
Q ss_pred CHHHHHHHHHHHHHhcCc
Q psy1863 283 DVEQASDVNENLLLEAVR 300 (425)
Q Consensus 283 ~~~~A~~~~~~~a~~~~p 300 (425)
++++|..++++ ++++..
T Consensus 162 ~~~~A~~~~~~-al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLR-ARDIFA 178 (203)
T ss_dssp CHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHH-HHHHHH
Confidence 99999999999 887643
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.59 E-value=4e-14 Score=112.02 Aligned_cols=107 Identities=8% Similarity=0.063 Sum_probs=102.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
..+|.++..+..+|.+++..|++++|+.+|++++..+|+++.++.++|.++...|++++|+..+++++..+|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcc
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~ 301 (425)
+|.++...|++++|+..|++ +++..|+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~-a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQR-AYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH-HHHHChh
Confidence 99999999999999999999 9999887
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.59 E-value=4.5e-14 Score=110.43 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNL 240 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 240 (425)
.+++.+|.+++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3567788888888888888888888888888877 788888888888888888888888888888887 7888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 241 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
|.++..+|++++|+..|++++...|+++.+......+-...+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 888888888888888888888888888777666555544433
No 152
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=2.1e-13 Score=123.09 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS------AAFVNLGNCAMAREDYVKGKELYVHALDNDATC--- 233 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 233 (425)
+.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+.++++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34455667788999999999999999999999887765 336778999999999999999999999875433
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch-
Q psy1863 234 ---IEALYNLGLAHKHLNEYSDSLECFHKLQ---AIVPSMP----EVLYQIASLYEITGDVEQASDVNENLLLEAVRND- 302 (425)
Q Consensus 234 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~- 302 (425)
..++.++|.+|...|++++|+.+|++++ ...|++. .+++++|.+|..+|++++|+.++++ +++..++.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k-al~~~~~~~ 230 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK-AIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH-HHHHHHhcC
Confidence 6689999999999999999999999999 5566543 6899999999999999999999999 99876541
Q ss_pred -----H--HHHHHHh-----hHHHH-HHHHHHHHhhc
Q psy1863 303 -----A--LSQLHRE-----MKHEA-EKCILTSAKLI 326 (425)
Q Consensus 303 -----~--~~~l~~~-----~~~~A-~~~~~~a~~~~ 326 (425)
. +.++|.+ ++++| ..++++++.+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2 6777777 78899 78899998765
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-14 Score=113.06 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN---SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
+..+..++.+|..++..|++++|+..|+++++.+|++ ..++.++|.++...|++++|+.++++++..+|+++.++++
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 5567778888888888888888888888888888876 7778888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
+|.++...|++++|+.+|++++..+|++..++..++.+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888888888887777776643
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.58 E-value=3e-14 Score=111.28 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHH
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEA 236 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~ 236 (425)
..+.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998776 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (425)
+.++|.++...|++++|+.+|++++...| ++.....++.+....+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 6888888887765543
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.58 E-value=8.3e-16 Score=148.35 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
.+.++..+|.++...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|+++.+++++|.+|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhcCcch
Q psy1863 245 KHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL--YEITGDVEQASDVNE-----------NLLLEAVRND 302 (425)
Q Consensus 245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~a~~~~p~~ 302 (425)
..+|++++|+..|+++++++|++..++..++.+ +...|++++|+..++ + ++...|+.
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE-SMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS-SCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh-hccccccc
Confidence 999999999999999999999999999999998 888999999999999 7 77776654
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=4.3e-14 Score=110.90 Aligned_cols=118 Identities=20% Similarity=0.145 Sum_probs=111.8
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (425)
+.....+..+|..+...|++++|+..|++++ |.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4456677899999999999999999999998 8889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q psy1863 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 249 (425)
++...|++++|+.+|++++..+|.+..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988774
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.57 E-value=6.1e-14 Score=109.46 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (425)
....++.+|..+...|++++|+..|++++ |..+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35566889999999999999999999998 888999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 250 (425)
...|++++|+.+|++++..+|+++.++..+|.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998875
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.57 E-value=4.9e-14 Score=115.28 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDN------------------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
+..+...|..++..|+|++|+..|++++.. +|....++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467899999999999999999999999999 77778999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
.++|+++.+++.+|.++..+|++++|+..|++ ++.++|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~-al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKL-LLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH-HHhcCCCCH
Confidence 99999999999999999999999999999999 999999987
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=1.3e-13 Score=105.44 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (425)
.+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863 279 EITGDVEQASDVNENLLLEAVRNDA--LSQLHR 309 (425)
Q Consensus 279 ~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~ 309 (425)
...|++++|..++++ +++.+|+++ +..++.
T Consensus 83 ~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEE-GLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHH-HHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH-HHHcCCCCHHHHHHHHH
Confidence 999999999999999 999999988 555543
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=3.3e-15 Score=137.72 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=82.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNS-----------------AAFVNLGNCAMAREDYVKGKELYVH 225 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 225 (425)
+..+..+..+|..++..|++++|+..|++++...|.+. .+++++|.++..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567788888888888889999998988888888766 3778888888888888888888888
Q ss_pred HHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY-EITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 226 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+ ++...|+++
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~-~l~~~p~~~ 333 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG-IFKGKDEGG 333 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 88888888888888888888888888888888888888888888888887773 445667777778888 777777654
No 161
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.56 E-value=7.8e-15 Score=128.91 Aligned_cols=189 Identities=8% Similarity=-0.017 Sum_probs=156.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNL-------SFIYFLQGEVEQAEKMAEEACTADTYNSA------- 201 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~p~~~~------- 201 (425)
+..|.-+ ..+++..|...|.+++ |..+++|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 4445554 5899999999999998 9999999999 89999999999999999999998765443
Q ss_pred --------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy1863 202 --------------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM 267 (425)
Q Consensus 202 --------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (425)
+...++.++...|+|++|...|..++...|.+. +.+.+|.++.+.|++++|+..|+.+....+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 344578889999999999999999998899888 99999999999999999999998776543221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--cc-hH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863 268 --PEVLYQIASLYEITGDVEQASDVNENLLLEAV--RN-DA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 268 --~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~--p~-~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~ 331 (425)
..+++.+|.++..+|++++|+.+|++ +.... |. .+ +..+|.+ +.++|...|++++...|. ..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~-a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTE-ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHH-HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 35899999999999999999999999 87543 54 33 6666666 889999999999999998 44
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.55 E-value=2.1e-14 Score=108.97 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q psy1863 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS--MPEVLYQI 274 (425)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 274 (425)
|+++.++..+|.++...|++++|+.+|+++++.+|.+..++.++|.++...|++++|+.+++++++..|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555555555555555555 55555555
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhcCcc
Q psy1863 275 ASLYEIT-GDVEQASDVNENLLLEAVRN 301 (425)
Q Consensus 275 a~~~~~~-g~~~~A~~~~~~~a~~~~p~ 301 (425)
|.++... |++++|+.++++ ++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~-~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEAR-AKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHH-HGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHH-HhhcccC
Confidence 5555555 555555555555 5555544
No 163
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1e-13 Score=136.08 Aligned_cols=163 Identities=8% Similarity=-0.056 Sum_probs=152.0
Q ss_pred HcCC-HHHHHHHHHhcc---cchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy1863 147 RMND-VSQAVDVLKSCD---EMTSSAATNLSFIYFLQGE----------VEQAEKMAEEACTADTYNSAAFVNLGNCAMA 212 (425)
Q Consensus 147 ~~g~-~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (425)
..|+ .++|++.+.+++ |.+..+|+..+.++...|+ +++++..++++++.+|.+..+|+..+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444 457899999999 9999999999999999998 9999999999999999999999999999999
Q ss_pred hc--CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------
Q psy1863 213 RE--DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-EYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT-------- 281 (425)
Q Consensus 213 ~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 281 (425)
.| ++++++.++.++++.+|.+..+|.+.+.+....| .++++++++.++++.+|.+..+|..++.++..+
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 99 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ------CCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 282 ------GDVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 282 ------g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
+.++++++++.+ ++..+|++. |..++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~-ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 200 QGRLPENVLLKELELVQN-AFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp CCSSCHHHHHHHHHHHHH-HHHHCSSCSHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH-HHhhCCCCccHHHHHHHH
Confidence 567999999999 999999988 7777666
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=6.8e-15 Score=141.35 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=120.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---------------HHHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---------------IEALYNLGL 242 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~la~ 242 (425)
..+++++|+..++.++...|.....+.++|.+++..|+|++|+..|++++.++|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888889999999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHHh
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHRE 310 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~~ 310 (425)
+|.++|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|++ +++++|++. +..++.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~-al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK-VLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTC----CHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999998 7777766
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=4.3e-14 Score=107.18 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=100.8
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC--cHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT--CIEALYNL 240 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l 240 (425)
|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|. +..++.++
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q psy1863 241 GLAHKHL-NEYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 241 a~~~~~~-g~~~~A~~~~~~al~~~p~~~ 268 (425)
|.++... |++++|+.++++++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999998753
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-13 Score=107.95 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=106.4
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC---IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
..|.+...++.+|..++..|++++|+.+|++++..+|++ ..++.++|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457789999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHH
Q psy1863 272 YQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH 308 (425)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~ 308 (425)
+.+|.++...|++++|+.+|++ ++..+|+++ +..++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQR-CVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-HHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-HHHcCCCcHHHHHHHH
Confidence 9999999999999999999999 999999987 44443
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=4.3e-13 Score=103.57 Aligned_cols=114 Identities=32% Similarity=0.463 Sum_probs=104.2
Q ss_pred cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy1863 195 ADTYN-SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273 (425)
Q Consensus 195 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (425)
.+|.. ..+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 34555 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863 274 IASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLHR 309 (425)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~a~~~~p~~~--~~~l~~ 309 (425)
+|.++...|++++|..++++ ++...|+++ +..++.
T Consensus 83 la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQK-ALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHH-HHHhCCCcHHHHHHHHH
Confidence 99999999999999999999 999999887 555554
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.53 E-value=1e-13 Score=129.05 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACT----------------ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (425)
.+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345677888888888888888888888887 7778889999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888887754
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.52 E-value=2.8e-13 Score=122.29 Aligned_cols=159 Identities=9% Similarity=0.010 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA------AFVNLGNCAMAREDYVKGKELYVHALDNDATC------IE 235 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~ 235 (425)
.+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445578889999999999999999998877765 24468999999999999999999999964432 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcch------
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIV-------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND------ 302 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~------ 302 (425)
++.++|.+|...|++++|+.+|++++... +....+++++|.+|..+|++++|+.++++ ++++.+..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~-al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK-AIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHcCcHHHH
Confidence 79999999999999999999999999532 12345889999999999999999999999 99886543
Q ss_pred H--HHHHHHh------hHHHHHHHHHHHHhhcC
Q psy1863 303 A--LSQLHRE------MKHEAEKCILTSAKLIA 327 (425)
Q Consensus 303 ~--~~~l~~~------~~~~A~~~~~~a~~~~~ 327 (425)
. +..+|.+ ++++|..+|++++.+..
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 2 7778877 35999999999998753
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.51 E-value=6.6e-14 Score=111.31 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=65.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q psy1863 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY----------VKGKELYVHALDNDATCIEALYNLGLAHKHL 247 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 247 (425)
+.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 345677788888888888888888888888888777664 4777777777777777777777777777766
Q ss_pred C-----------CHHHHHHHHHHHHhhCCCCH
Q psy1863 248 N-----------EYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 248 g-----------~~~~A~~~~~~al~~~p~~~ 268 (425)
| ++++|+.+|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 56666666666666666654
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.51 E-value=1.2e-12 Score=118.74 Aligned_cols=219 Identities=12% Similarity=-0.015 Sum_probs=182.5
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHALDNDATCIEALYNLG 241 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la 241 (425)
+....++..+..+....+..++|+..+.+++.++|++..+|+..+.++...| .+++++.++.+++..+|.+..+|+..+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~ 130 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4445666666666677777789999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhcCcchH--HHHHHH
Q psy1863 242 LAHKHL-N-EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE--------QASDVNENLLLEAVRNDA--LSQLHR 309 (425)
Q Consensus 242 ~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~a~~~~p~~~--~~~l~~ 309 (425)
.++... + ++++++.++.+++..+|.+..+|...+.+....|.++ ++++++.+ +++.+|.|. |...+.
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k-~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE-MLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Confidence 999998 8 9999999999999999999999999999999988887 99999999 999999988 777777
Q ss_pred h-----h-------HHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHh------------------------HHhhch--
Q psy1863 310 E-----M-------KHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSI------------------------RNSAHS-- 351 (425)
Q Consensus 310 ~-----~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-- 351 (425)
+ . ++++++++.+++..+|.+...+..........+. ......
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 6 2 6899999999999999999988765422211110 110000
Q ss_pred ---------hhhcHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1863 352 ---------SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD 382 (425)
Q Consensus 352 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 382 (425)
.-..-+.-.++.+|...|+.++|+++++...
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0112334458999999999999999999984
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.51 E-value=7e-13 Score=112.24 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=128.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCcCcHHHHHHHHHHHHHcCC
Q psy1863 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD------NDATCIEALYNLGLAHKHLNE 249 (425)
Q Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~g~ 249 (425)
.+..|++++|...++......+....++..+|.++...|++++|+.++++++. ..|....++.++|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35689999999966555543346778999999999999999999999999998 345567889999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHH
Q psy1863 250 YSDSLECFHKLQAI---VPSM----PEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTS 322 (425)
Q Consensus 250 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~~~~l~~~~~~~A~~~~~~a 322 (425)
+++|+.++++++.. .+++ ..++.++|.++...|++++|+.++++ ++...+..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~-------------------- 140 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK-SLVYAQQA-------------------- 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhc--------------------
Confidence 99999999999988 4433 45789999999999999999999999 66432110
Q ss_pred HhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcc
Q psy1863 323 AKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT 390 (425)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 390 (425)
+. .......+..+|.++...|++++|+..++++........+
T Consensus 141 ----~~----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 141 ----DD----------------------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp ----TC----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----cc----------------------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 00 0001234567899999999999999999999765554433
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.51 E-value=3.5e-13 Score=105.26 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM---PEVLYQI 274 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 274 (425)
.+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3478899999999999999999999999999887 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 275 ASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
|.++..+|++++|+..|++ ++...|+++
T Consensus 83 a~~~~~~g~~~~A~~~~~~-~~~~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQ-VATQYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHH-HHHHSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHH-HHHHCCCCh
Confidence 9999999999999999999 999999988
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=2.8e-14 Score=109.84 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=72.4
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTA---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 254 (425)
.+|++++|+.+|+++++. +|+++.++.++|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357778888888888887 57777788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCCHHHHH
Q psy1863 255 ECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 255 ~~~~~al~~~p~~~~~~~ 272 (425)
..+++++...|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888887776543
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=1.6e-12 Score=127.54 Aligned_cols=160 Identities=7% Similarity=-0.046 Sum_probs=147.6
Q ss_pred HcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 178 LQGEV-EQAEKMAEEACTADTYNSAAFVNLGNCAMARED----------YVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 178 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
..|++ ++|+..+.+++..+|++..+|+..+.++...|+ +++++..+++++..+|.+..+|++.+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444 678999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCcchH--HHHHHHh-----------
Q psy1863 247 LN--EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-DVEQASDVNENLLLEAVRNDA--LSQLHRE----------- 310 (425)
Q Consensus 247 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~a~~~~p~~~--~~~l~~~----------- 310 (425)
.| +++++++++.++++.+|.+..+|...+.+....| .++++++++.+ +++.+|++. |...+.+
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~-~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS-LITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT-TTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHH-HHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 99 7799999999999999999999999999999999 99999999999 999999988 6666555
Q ss_pred --------hHHHHHHHHHHHHhhcCCchhhHhhchH
Q psy1863 311 --------MKHEAEKCILTSAKLIAPSIEDNFSNGY 338 (425)
Q Consensus 311 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 338 (425)
.++++++++.+++..+|.+...|...++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ 234 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 234 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 2589999999999999999998887763
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.49 E-value=2.1e-13 Score=110.65 Aligned_cols=132 Identities=23% Similarity=0.284 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------ 233 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------ 233 (425)
+.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3455666666666666666666666666554321 1356666666666667777766666666653321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS------MPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
..++.++|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++ ++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK-HLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHH
Confidence 446667777777777777777777777655321 234566777777777777777777777 6654
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.6e-13 Score=126.11 Aligned_cols=159 Identities=9% Similarity=0.052 Sum_probs=134.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD------TYNSAAF 203 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~ 203 (425)
..+|.+|...|++++|++++.+++ .....+...+|.++...|++++|+.++++++... +....++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 678999999999999999999988 1223466778999999999999999999998764 3336789
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----HHH
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDN------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP---SM----PEV 270 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~ 270 (425)
.++|.++...|+|++|+.++++++.. .|....++..+|.+|...|++++|...+++++...+ +. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 99999999999999999999999875 234477999999999999999999999999987743 22 246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
+..+|.++...|++++|..+|.+ +++.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~-a~~~ 245 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFE-SFES 245 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH-HHHH
Confidence 77888999999999999999999 8765
No 178
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.48 E-value=2.3e-13 Score=126.42 Aligned_cols=172 Identities=10% Similarity=0.032 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 136 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
..+..+|..+...|+|++|+.+|.++ ..|..+|.++..+|++++|++.++++ +++.+|...+.++...|+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp --------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc
Confidence 36789999999999999999999987 57889999999999999999999999 478999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI--TGDVEQASDVNEN 293 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~ 293 (425)
++.|..+... +..+|+. ...+..+|.+.|++++|+.++++++.+++....++..+|.+|.+ .++..+.++.|..
T Consensus 193 f~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 193 FRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999888776 3355554 44688999999999999999999999999999999999998876 4677788888887
Q ss_pred HHHhcCc-----chH--HHHHHHh-----hHHHHHHHHHHH
Q psy1863 294 LLLEAVR-----NDA--LSQLHRE-----MKHEAEKCILTS 322 (425)
Q Consensus 294 ~a~~~~p-----~~~--~~~l~~~-----~~~~A~~~~~~a 322 (425)
.+.+.| ++. |..+..+ +++.|...+-+.
T Consensus 269 -~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 -RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp -TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred -HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 777766 444 7777666 777787755443
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.48 E-value=5.5e-13 Score=104.00 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q psy1863 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM-------PEV 270 (425)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 270 (425)
..+..+..+|.++...|++++|+.+|++++..+|.++.++.++|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH-HHHHHHh
Q psy1863 271 LYQIASLYEITGDVEQASDVNENLLLEAVRNDA-LSQLHRE 310 (425)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~-~~~l~~~ 310 (425)
++.+|.++...|++++|+.+|++ +++..|+.. ...++.+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNK-SLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-HHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHH-HHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999 999988543 5555443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.47 E-value=8.7e-13 Score=106.89 Aligned_cols=133 Identities=20% Similarity=0.131 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---E------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN----- 199 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 199 (425)
...++..+|..+...|++++|+..+++++ + ....++..+|.++...|++++|+.++++++...+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 45667899999999999999999999998 1 223588999999999999999999999999876443
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 200 -SAAFVNLGNCAMAREDYVKGKELYVHALDNDA------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 200 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
..++.++|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+.++++++++...
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998732 23668899999999999999999999999987543
No 181
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.47 E-value=3.4e-12 Score=113.59 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=131.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---c--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHH--
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---E--MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTY----NSAAFVNL-- 206 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l-- 206 (425)
.+.+|.++...|++++|+.++.+.+ + ...+++..++.++..+|+.+.|.+.++++.+.+|+ +..+...+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence 4678899999999999999999987 3 67888999999999999999999999999888883 22333444
Q ss_pred HHHHHHhc--CHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHH
Q psy1863 207 GNCAMARE--DYVKGKELYVHALDNDAT--CIEALYNLGLAHKHLNEYSDSLECFHKLQAI----------VPSMPEVLY 272 (425)
Q Consensus 207 a~~~~~~g--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~ 272 (425)
|.+.+..| ++.+|..+|+++....|+ .+..+++ ++.++|++++|...++.+++. +|+++.++.
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 54466666 899999999998888887 3444444 889999999999999977776 488899998
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 273 QIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+++.+...+|+ +|.+++++ +.+.+|+++
T Consensus 260 N~i~l~~~lgk--~a~~l~~q-L~~~~P~hp 287 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQ-LVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHH-HHHTTCCCH
T ss_pred HHHHHHHHhCh--HHHHHHHH-HHHhCCCCh
Confidence 99888888897 88899999 999999999
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.46 E-value=7.6e-14 Score=128.57 Aligned_cols=135 Identities=9% Similarity=0.018 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTS-----------------SAATNLSFIYFLQGEVEQAEKMAEEACT 194 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 194 (425)
...+..+|..++..|++++|+..|++++ |... .+++++|.++..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456788999999999999999999998 5554 3899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA-HKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
.+|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ....+..+++...|.+++...|.++.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999998 44567888999999999999987653
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.46 E-value=2.2e-13 Score=108.29 Aligned_cols=92 Identities=11% Similarity=0.157 Sum_probs=86.4
Q ss_pred HHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY----------SDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
.+.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHhcCcchH
Q psy1863 281 TG-----------DVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 281 ~g-----------~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+| ++++|+.+|++ |++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~k-Al~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQ-AVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHH-HHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHH-HHHhCCCCH
Confidence 85 89999999999 999999987
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.44 E-value=5.7e-14 Score=135.47 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=116.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
..+|..+...|++++|+..|++++ |..+.++.++|.++..+|++++|+..++++++++|+++.+++++|.++..+|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 456788899999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q psy1863 216 YVKGKELYVHALDNDATCIEALYNLGLA--HKHLNEYSDSLECFH-----------KLQAIVPSM 267 (425)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 267 (425)
+++|+..|+++++++|++..++.+++.+ +...|++++|+..++ +++.+.|+.
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999999999999998 889999999999999 777777643
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.43 E-value=2.1e-13 Score=104.88 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=83.9
Q ss_pred HhcCHHHHHHHHHHHHhc---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy1863 212 AREDYVKGKELYVHALDN---DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (425)
.+|++++|+.+|+++++. +|+++.++.++|.++..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchH
Q psy1863 289 DVNENLLLEAVRNDA 303 (425)
Q Consensus 289 ~~~~~~a~~~~p~~~ 303 (425)
..+++ ++...|+++
T Consensus 82 ~~~~~-al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLK-IIAETSDDE 95 (117)
T ss_dssp HHHHH-HHHHHCCCH
T ss_pred HHHHH-HHHhCCCcH
Confidence 99999 999999887
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.9e-12 Score=122.03 Aligned_cols=189 Identities=11% Similarity=0.046 Sum_probs=156.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---c-----------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---E-----------------MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT 197 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 197 (425)
.+..|..+...|++++|++.|.+++ + ....++..+|.+|...|++++|+.++.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999987 1 2235789999999999999999999999998765
Q ss_pred CCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q psy1863 198 YNS------AAFVNLGNCAMAREDYVKGKELYVHALDND------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV- 264 (425)
Q Consensus 198 ~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 264 (425)
... .+...+|.++...|++++|+.++++++... +....++.++|.++...|+|++|+..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 432 346678888889999999999999998763 3347789999999999999999999999998763
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc---hH------HHHHHHh-----hHHHHHHHHHHHHhh
Q psy1863 265 -----PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN---DA------LSQLHRE-----MKHEAEKCILTSAKL 325 (425)
Q Consensus 265 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~---~~------~~~l~~~-----~~~~A~~~~~~a~~~ 325 (425)
|....++..+|.+|...|++++|..++++ ++...+. .+ +..+|.+ ++.+|..+|.++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA-ARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23456899999999999999999999999 8876432 21 4455555 999999999999886
Q ss_pred cC
Q psy1863 326 IA 327 (425)
Q Consensus 326 ~~ 327 (425)
.+
T Consensus 246 ~~ 247 (434)
T 4b4t_Q 246 YH 247 (434)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.39 E-value=5.7e-12 Score=117.29 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD-------------------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 195 (425)
...+..+|..++..|++++|+..|++++ |..+.++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999987 234688999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887654
No 188
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.39 E-value=1.2e-11 Score=110.02 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=143.3
Q ss_pred HHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863 154 AVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADT--YNSAAFVNLGNCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 154 A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (425)
|+..+++.+ +....++..+|.++...|++++|+..+.+.+..+| ++..+...++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 788888887 35566778999999999999999999999999987 8889999999999999999999999999999
Q ss_pred cCcC----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 229 NDAT----CIEALYNL--GLAHKHLN--EYSDSLECFHKLQAIVPS--MPEVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 229 ~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
.+|+ +..+..++ |.+....| ++++|...|+++....|+ .+..+++ ++..+|++++|...++. +++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~-l~~~ 240 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVEL-LLSD 240 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHH-HHSH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHH-HHHh
Confidence 9883 23334444 44466666 999999999999888886 3344444 89999999999999998 8876
Q ss_pred ----------CcchH--HHHHHHh---hHHHHHHHHHHHHhhcCCchhh
Q psy1863 299 ----------VRNDA--LSQLHRE---MKHEAEKCILTSAKLIAPSIED 332 (425)
Q Consensus 299 ----------~p~~~--~~~l~~~---~~~~A~~~~~~a~~~~~~~~~~ 332 (425)
+|+++ +.++..+ .-++|.+++.++.+..|+++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCCCHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHhCCCChHH
Confidence 47777 6565444 2238899999999999988743
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.3e-12 Score=99.00 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc------HHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC------IEALYN 239 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~ 239 (425)
+.++..+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666655 555556
Q ss_pred HHHHHHHcCCHHHHHHHH
Q psy1863 240 LGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~ 257 (425)
+|.++...|+++.|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666665555555544433
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=1e-12 Score=99.60 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSM------PEVLY 272 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 272 (425)
++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy1863 273 QIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~ 293 (425)
.+|.++..+|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988887766655
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.31 E-value=2.2e-11 Score=92.99 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 184 QAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++.++|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCC--CHHHHHHHHHH
Q psy1863 264 VPS--MPEVLYQIASL 277 (425)
Q Consensus 264 ~p~--~~~~~~~la~~ 277 (425)
.|. +......+...
T Consensus 83 ~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 83 AQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHH
Confidence 663 33333444333
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=3.2e-11 Score=87.56 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (425)
+.+++.+|.++...|++++|+.+|++++..+|+++.++.++|.++...|++++|+.+|++++..+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hc
Q psy1863 280 IT 281 (425)
Q Consensus 280 ~~ 281 (425)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=3e-11 Score=87.71 Aligned_cols=86 Identities=33% Similarity=0.405 Sum_probs=80.7
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 242 (425)
+..+.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++.++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q psy1863 243 AHKHLN 248 (425)
Q Consensus 243 ~~~~~g 248 (425)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 988765
No 194
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=5.1e-10 Score=111.46 Aligned_cols=215 Identities=12% Similarity=0.007 Sum_probs=176.9
Q ss_pred HHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863 152 SQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAE-KMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227 (425)
Q Consensus 152 ~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (425)
......|++++ |..+..|...+......|+.++|. ..|++|+...|.+...|..++......|++++|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567788888 899999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hc-----------CcC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-C
Q psy1863 228 DN-----------DAT-----------CIEALYNLGLAHKHLNEYSDSLECFHKLQAI-VPSMPEVLYQIASLYEITG-D 283 (425)
Q Consensus 228 ~~-----------~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g-~ 283 (425)
.. .|. ...+|...+.+..+.|..+.|...|.+|++. .+....+|...+.+....| +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 75 242 3557888999999999999999999999987 4456778877777766665 4
Q ss_pred HHHHHHHHHHHHHhcCcchH--HHHHHHh-----hHHHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcH
Q psy1863 284 VEQASDVNENLLLEAVRNDA--LSQLHRE-----MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD 356 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~~~--~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (425)
++.|...|+. +++..|+++ |..++.. +.+.|...|++++...|+.. ....
T Consensus 486 ~e~Ar~ife~-~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~----------------------~~~~ 542 (679)
T 4e6h_A 486 TKTACKVLEL-GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH----------------------LLKM 542 (679)
T ss_dssp CHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT----------------------HHHH
T ss_pred HHHHHHHHHH-HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH----------------------HHHH
Confidence 8999999999 999999888 4444444 78899999999999887410 0124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q psy1863 357 LEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAA 389 (425)
Q Consensus 357 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 389 (425)
+|......-...|+.+.+..+.+++....|+.+
T Consensus 543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 543 IFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 555556666778999999999999987777654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.22 E-value=8.7e-11 Score=89.67 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 218 KGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
+|+..|+++++.+|+++.+++++|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++ +++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES-GLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cCcchH
Q psy1863 298 AVRNDA 303 (425)
Q Consensus 298 ~~p~~~ 303 (425)
..|.+.
T Consensus 82 ~~~~~~ 87 (115)
T 2kat_A 82 AAQSRG 87 (115)
T ss_dssp HHHHHT
T ss_pred hccccc
Confidence 887654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.20 E-value=1.1e-10 Score=111.97 Aligned_cols=92 Identities=15% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI-----VPSMP 268 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 268 (425)
++.++|.+|..+|+|++|+.++++++.+ +|+....++++|.+|..+|++++|+..|++++.+ .|+++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444555555555555555555555443 2333444455555555555555555555555543 23332
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 269 ---EVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 269 ---~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
.....++.++..++.+++|...|.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555555555555555555
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.19 E-value=1.1e-10 Score=112.03 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC---H
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN---S 200 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~ 200 (425)
..+..+..+|+|++|+.++++++ |....++.+||.+|..+|+|++|+.++++++.+. |++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 44555666777777777777766 4445667777777777777777777777777552 333 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
..+++||.+|..+|++++|+.+|++++.+ +|.......+++.++..+|.+++|...|.++.+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777764 3334455567777777777777777777766443
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.2e-09 Score=108.82 Aligned_cols=197 Identities=9% Similarity=0.002 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHH-HHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CC
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAV-DVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----------TY 198 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~ 198 (425)
..++++..|..+...|+.++|. .+|++++ |.....|..++......|++++|...|++++..- |.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4788889999999999999997 9999999 8888889999999999999999999999999752 53
Q ss_pred -----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Q psy1863 199 -----------NSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATCIEALYNLGLAHKHLNE-YSDSLECFHKLQAIVP 265 (425)
Q Consensus 199 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 265 (425)
...+|...+....+.|..+.|...|.+|++. .+....+|...|.+-...|+ ++.|...|+.+++..|
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 3457888899989999999999999999988 55557788878877777654 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcc--hH---HHHHHHh-----hHHHHHHHHHHHHhhcCCchh
Q psy1863 266 SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRN--DA---LSQLHRE-----MKHEAEKCILTSAKLIAPSIE 331 (425)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~--~~---~~~l~~~-----~~~~A~~~~~~a~~~~~~~~~ 331 (425)
+++..+...+......|+.+.|...|++ ++...|+ .. |..+... +.+.+....+++.+..|++..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lfer-al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFES-SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHH-HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999999999999999999 9998883 22 5544444 778899999999999998754
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.18 E-value=5.3e-11 Score=88.13 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDNDATCIE-ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (425)
..|.++...|++++|+..|+++++.+|+++. ++.++|.++...|++++|+..|+++++.+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4455555555555555555555555555555 55555555555555555555555555555555554432 33
Q ss_pred HHHHHHHHHHHHHhcCcc
Q psy1863 284 VEQASDVNENLLLEAVRN 301 (425)
Q Consensus 284 ~~~A~~~~~~~a~~~~p~ 301 (425)
+.+++..|++ +...+|+
T Consensus 77 ~~~a~~~~~~-~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNK-DMYNQLE 93 (99)
T ss_dssp HHHHHHHHCC-TTHHHHC
T ss_pred HHHHHHHHHH-HhccCcc
Confidence 4444455555 4444443
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.18 E-value=1.4e-10 Score=86.23 Aligned_cols=70 Identities=13% Similarity=0.278 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
+|+++.+++.+|.++...|++++|+.+|+++++.+|+++.+|.++|.+|...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4666666666666666666666666666666666666666666666666666666666666666666654
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.16 E-value=5.7e-11 Score=87.93 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 248 (425)
+..|.++...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+.+|+++++++|+++.++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56889999999999999999999999999999 99999999999999999999999999999999887754 5
Q ss_pred CHHHHHHHHHHHHhhCCCCH
Q psy1863 249 EYSDSLECFHKLQAIVPSMP 268 (425)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~ 268 (425)
.+.+++..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67888888888887777543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.14 E-value=1.4e-09 Score=85.89 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHH
Q psy1863 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH----LNEYSDSLEC 256 (425)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 256 (425)
++++|+.+|+++.+..+.... +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 566677777777666533333 666666666666677777777665 456677777777766 6677777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCc
Q psy1863 257 FHKLQAIVPSMPEVLYQIASLYEI----TGDVEQASDVNENLLLEAVR 300 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~a~~~~p 300 (425)
|+++.+. .++.+.+++|.+|.. .+++++|+.+|++ +.+...
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~-Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK-ACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH-HHHCCC
Confidence 7777655 466677777777776 6677777777777 666543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.13 E-value=8.2e-10 Score=87.27 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHH
Q psy1863 149 NDVSQAVDVLKSCD-EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA----REDYVKGKELY 223 (425)
Q Consensus 149 g~~~~A~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 223 (425)
+++++|+.+|+++. ..++.+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 36788999999988 4455555 999999999999999999999886 688999999999998 89999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 224 VHALDNDATCIEALYNLGLAHKH----LNEYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 224 ~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.. ++.+..+++
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999987 678999999999999 899999999999998874 566665554
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.10 E-value=4.6e-10 Score=83.31 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=68.2
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
.+|+++.+++++|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++ ++++.|.+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~-al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ-GIEVAREEG 75 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhhhcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999 998877654
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.99 E-value=2.4e-08 Score=90.41 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-------HHHH-HHHHH--HHhcCcCcHH
Q psy1863 169 ATNLSFIYFLQGE---VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY-------VKGK-ELYVH--ALDNDATCIE 235 (425)
Q Consensus 169 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~-~~~~~--al~~~~~~~~ 235 (425)
++..|..++..++ +.+|+.+|+++++++|+++.++..++.+|.....+ ..++ ..++. ++..+|..+.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 4455666665544 47899999999999999999999888887632211 1111 12222 2245788899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
++..++..+...|++++|+..+++++.++| +..++..+|.++...|++++|++.|.+ |+.++|..+
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~-AlrL~P~~~ 344 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLT-AFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSCSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCcC
Confidence 999999999999999999999999999997 477888999999999999999999999 999999988
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.85 E-value=1.8e-07 Score=81.23 Aligned_cols=109 Identities=10% Similarity=-0.010 Sum_probs=93.7
Q ss_pred HhcCCCCHHHHHHHHHHHHH---h--c------CHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHc-----CCHHHHH
Q psy1863 193 CTADTYNSAAFVNLGNCAMA---R--E------DYVKGKELYVHALDNDAT--CIEALYNLGLAHKHL-----NEYSDSL 254 (425)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~ 254 (425)
-+.+|+++..++-.|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34568888887776666533 1 2 367899999999999999 577999999999995 9999999
Q ss_pred HHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCcch
Q psy1863 255 ECFHKLQAIVPSM-PEVLYQIASLYEI-TGDVEQASDVNENLLLEAVRND 302 (425)
Q Consensus 255 ~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~a~~~~p~~ 302 (425)
.+|+++++++|+. ..+++..|..++. .|++++|..++++ ++...|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k-AL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR-ALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH-HHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH-HHcCCCCC
Confidence 9999999999975 9999999999988 5999999999999 99998885
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=6.6e-08 Score=75.88 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-c-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMARE---DYVKGKELYVHALDND-A-TCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
...+.+.|.+.+..+|.+..+.+++|.++.+.+ +.++++.+++.+++.+ | ++.++++++|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677777777778888888888888888877 6678888888888887 6 5678888888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q psy1863 257 FHKLQAIVPSMPEVLYQIASL 277 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~ 277 (425)
+++++++.|++..+....-.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 888888888887776554433
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.80 E-value=1.9e-07 Score=84.56 Aligned_cols=130 Identities=9% Similarity=0.041 Sum_probs=104.1
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCH-------HHHHH-HHH--HHHhcCCCCHHH
Q psy1863 139 INKAVTFLRMN---DVSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEV-------EQAEK-MAE--EACTADTYNSAA 202 (425)
Q Consensus 139 ~~~a~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~-------~~A~~-~~~--~al~~~p~~~~~ 202 (425)
+..|..++..+ .+.+|+.+|++++ |..+.++..++.+|.....+ ..++. .+. .++..+|.++.+
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~ 279 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII 279 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHH
Confidence 45577777665 4578999999999 99999999888888532111 11111 122 123567999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (425)
+..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|.+|+.++|..+.
T Consensus 280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 280 YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999999999999999975 678899999999999999999999999999997653
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.77 E-value=4.6e-08 Score=70.98 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 196 DTYNSAAFVNLGNCAMARED---YVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|+|++|+.+|++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35555566666665544433 456666666666666666666666666666666666666666666655554
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.77 E-value=3.6e-08 Score=93.11 Aligned_cols=105 Identities=7% Similarity=-0.016 Sum_probs=72.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHH
Q psy1863 175 IYFLQGEVEQAEKMAEEACTAD-----TYNS---AAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALY 238 (425)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~ 238 (425)
-+..+|++++|+..+++++++. |+++ .++.++|.+|..+|+|++|+.++++++.+ +|+....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3456778888888888887652 4443 55777888888888888888888888765 444466777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHH
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAI-----VPSMPE---VLYQIASLYE 279 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~ 279 (425)
++|.+|..+|++++|+..+++++++ .|+++. +..+|+.+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8888888888888888888888765 345543 3444555443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.76 E-value=4.1e-08 Score=92.58 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=70.9
Q ss_pred HcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcCcHHHHHHHH
Q psy1863 178 LQGEVEQAEKMAEEACTA-----DTYNS---AAFVNLGNCAMAREDYVKGKELYVHALDN--------DATCIEALYNLG 241 (425)
Q Consensus 178 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la 241 (425)
..|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ +|+....++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888888888888875 34444 55788888888888888888888888865 455566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH
Q psy1863 242 LAHKHLNEYSDSLECFHKLQAI-----VPSMPEV 270 (425)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 270 (425)
.+|..+|++++|+..|++++++ .|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888775 4555543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.73 E-value=5.1e-08 Score=92.09 Aligned_cols=108 Identities=8% Similarity=-0.012 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH---
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYNS--- 200 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~--- 200 (425)
.....+..+|++++|+..+++++ |....++.++|.+|..+|+|++|+.++++++... |+++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455678899999999999987 5556789999999999999999999999999763 4444
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcCc---HHHHHHHHHHHHHc
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDN-----DATC---IEALYNLGLAHKHL 247 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~ 247 (425)
..++++|.+|..+|++++|+.+|++++++ .|++ ..++.+++.+...+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999976 3444 55666777766543
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.72 E-value=7.2e-08 Score=69.94 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=66.6
Q ss_pred cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863 163 EMTSSAATNLSFIYFLQGE---VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (425)
|.++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|++++..+|..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 6788999999999987766 7999999999999999999999999999999999999999999999999874
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=5.1e-08 Score=91.95 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC---HHH
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD-----------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYN---SAA 202 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~ 202 (425)
.......|+|++|+.++++++ |....++.++|.+|..+|+|++|+.++++++.+. |++ ...
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 334445789999999999987 5556788999999999999999999999999762 444 456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcCcHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDN-----DATCIEA 236 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 236 (425)
++++|.+|..+|++++|+.+|++++++ .|+++.+
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999999999986 4555544
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.69 E-value=1.9e-07 Score=69.43 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTAD-------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (425)
.-++.+|..++..|+|..|+..|++|++.. +..+.++..+|.+++++|++++|+.++++++++.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334445555555555555555555554432 1223344444444444444444444444444444444444443
Q ss_pred H
Q psy1863 240 L 240 (425)
Q Consensus 240 l 240 (425)
+
T Consensus 86 ~ 86 (104)
T 2v5f_A 86 L 86 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.68 E-value=2.9e-07 Score=68.44 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy1863 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDND-------ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (425)
++.-++.+|..++..|+|..|+..|+++++.. +..+.++.++|.++.++|+++.|+..+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45667899999999999999999999999863 34578899999999999999999999999999999999988
Q ss_pred HHHHH
Q psy1863 272 YQIAS 276 (425)
Q Consensus 272 ~~la~ 276 (425)
.+++.
T Consensus 84 ~n~~~ 88 (104)
T 2v5f_A 84 GNLKY 88 (104)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 88773
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.66 E-value=3.4e-07 Score=79.60 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=98.4
Q ss_pred HHcCCHHHHHHHHHhcccchHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy1863 146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFL-----QG------EVEQAEKMAEEACTADTY--NSAAFVNLGNCAMA 212 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 212 (425)
+..++..+-...+.++-+.++.+++..|.+... .| ....|...++++++++|+ +..++..+|..|..
T Consensus 132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence 344443333333444447888888877776644 13 357899999999999999 66799999999999
Q ss_pred h-----cCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q psy1863 213 R-----EDYVKGKELYVHALDNDATC-IEALYNLGLAHKH-LNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 213 ~-----g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 266 (425)
. |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++++...|.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 5 99999999999999999975 9999999999988 59999999999999998876
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.64 E-value=5e-06 Score=80.18 Aligned_cols=163 Identities=10% Similarity=0.056 Sum_probs=134.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc----cchHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcC-CCCHHHHHH
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD----EMTSSAATNLSFIYFLQG---------EVEQAEKMAEEACTAD-TYNSAAFVN 205 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~~ 205 (425)
..-..+.+.|+.++|..+|+++. ..+..+|..+-.++...+ ..++|...|++..... +.+..++..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34467789999999999999987 456677777776666544 3789999999987764 447788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCC
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDND-ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP-SMPEVLYQIASLYEITGD 283 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 283 (425)
+...+.+.|++++|..+|++..+.. +-+..+|..+-..|.+.|+.++|.+.|++..+..- .+..+|..+..++.+.|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 9999999999999999999988752 23578899999999999999999999999987643 377889999999999999
Q ss_pred HHHHHHHHHHHHHh--cCcchH
Q psy1863 284 VEQASDVNENLLLE--AVRNDA 303 (425)
Q Consensus 284 ~~~A~~~~~~~a~~--~~p~~~ 303 (425)
.++|..++++ ..+ ..|+..
T Consensus 191 ~d~A~~ll~~-Mr~~g~~ps~~ 211 (501)
T 4g26_A 191 ADKVYKTLQR-LRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHHHH-HHHHTSSBCHH
T ss_pred HHHHHHHHHH-HHHhCCCcCHH
Confidence 9999999999 554 356555
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=2.2e-07 Score=72.91 Aligned_cols=88 Identities=9% Similarity=0.076 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLN---EYSDSLECFHKLQAIV-P-SMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
....+.+.|.+.+..+|.+.++.+++|.++.+.+ +.++++..++..++.+ | +..++++++|..+.++|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4566788888888888999999999999999988 6779999999999998 7 568899999999999999999999
Q ss_pred HHHHHHHhcCcchH
Q psy1863 290 VNENLLLEAVRNDA 303 (425)
Q Consensus 290 ~~~~~a~~~~p~~~ 303 (425)
+++. +++.+|++.
T Consensus 93 y~~~-lL~ieP~n~ 105 (152)
T 1pc2_A 93 YVRG-LLQTEPQNN 105 (152)
T ss_dssp HHHH-HHHHCTTCH
T ss_pred HHHH-HHhcCCCCH
Confidence 9999 999999987
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.46 E-value=2.3e-05 Score=75.55 Aligned_cols=165 Identities=10% Similarity=-0.120 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy1863 151 VSQAVDVLKSCD---EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227 (425)
Q Consensus 151 ~~~A~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (425)
......+|++++ |..+..|...+..+...|+.++|...|++++.. |.+...+...+... ..+ +....+.+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~ 269 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHH
Confidence 345677888888 888999999999999999999999999999999 99887766554431 111 1111111111
Q ss_pred h----------cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q psy1863 228 D----------NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-DVEQASDVNENLLL 296 (425)
Q Consensus 228 ~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~a~ 296 (425)
. ..+....+|...+....+.|..+.|...|.++ ...+.....|...|.+....+ +.+.|...|+. ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~-al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS-GL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH-HH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH-HH
Confidence 0 01122456777777777788888888888888 433335566666666655555 58888888888 88
Q ss_pred hcCcchH--HHHHHHh-----hHHHHHHHHHHH
Q psy1863 297 EAVRNDA--LSQLHRE-----MKHEAEKCILTS 322 (425)
Q Consensus 297 ~~~p~~~--~~~l~~~-----~~~~A~~~~~~a 322 (425)
+..|+++ +...... +.+.|...|+++
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777 3333333 667777777776
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.42 E-value=0.00018 Score=69.22 Aligned_cols=160 Identities=11% Similarity=-0.035 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH--
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGE-VEQAEKMAEEACTA---DTYNSAAFVNLGNCAM-- 211 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~~~~-- 211 (425)
..+...+-.|+++.+..+|++++ ..+...|..........++ .+.....|+.++.. +|.+...|......+.
T Consensus 19 er~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~ 98 (493)
T 2uy1_A 19 EHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKI 98 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc
Confidence 33444444478888888888888 2255666666655555553 34556677777764 5777777777766543
Q ss_pred --HhcCHHHHHHHHHHHHhcCcCcHH-------------------------------------------------HHHHH
Q psy1863 212 --AREDYVKGKELYVHALDNDATCIE-------------------------------------------------ALYNL 240 (425)
Q Consensus 212 --~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------------------~~~~l 240 (425)
.+|+.+.+...|++++...+.+.. .|...
T Consensus 99 ~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y 178 (493)
T 2uy1_A 99 EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL 178 (493)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 356777888888888875322211 11111
Q ss_pred HHHHHHcCC---------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 241 GLAHKHLNE---------YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 241 a~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
... ..++ .+.....|++++...|..+..|...+..+...|+.++|...|++ ++.. |.+.
T Consensus 179 ~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~er-Ai~~-P~~~ 246 (493)
T 2uy1_A 179 IDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVER-GIEM-SDGM 246 (493)
T ss_dssp HHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHH-CCSS
T ss_pred HHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhC-CCcH
Confidence 111 1121 23455677777777787788888888777777888888888888 8777 7665
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.28 E-value=0.00021 Score=68.86 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcC-cCcHHH
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTAD-TYNSAAFVNLGNCAMAR---------EDYVKGKELYVHALDND-ATCIEA 236 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~-~~~~~~ 236 (425)
.+..+-..+.+.|+.++|+.+|++..+.. +.+..+|..+-.++... +..++|...|++..... +-+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 35566678889999999999999998764 34666777776666544 34789999999988752 235778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CcchH-HHHHHHh--
Q psy1863 237 LYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQIASLYEITGDVEQASDVNENLLLEA--VRNDA-LSQLHRE-- 310 (425)
Q Consensus 237 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~--~p~~~-~~~l~~~-- 310 (425)
|..+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|+.++|...|++ ..+. .|+.. +..+-..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH-MVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999988763 23788899999999999999999999999 6553 56655 4443333
Q ss_pred ---hHHHHHHHHHHHHhhc
Q psy1863 311 ---MKHEAEKCILTSAKLI 326 (425)
Q Consensus 311 ---~~~~A~~~~~~a~~~~ 326 (425)
+.++|...+++..+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhC
Confidence 9999999999987654
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.27 E-value=1.5e-05 Score=60.17 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-c-CcHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK---GKELYVHALDND-A-TCIEALYNLGLAHKHLNEYSDSLE 255 (425)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 255 (425)
....+...|.+.+..++.+..+.+++|.++.+...... ++.+++..+..+ | ..-+.++.+|..++++|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34556667777777777788888888888888776655 888888888776 5 456788888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHH
Q psy1863 256 CFHKLQAIVPSMPEVLYQIAS 276 (425)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~ 276 (425)
+++..++..|++..+......
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 888888888888777654443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.94 E-value=0.00021 Score=55.07 Aligned_cols=107 Identities=14% Similarity=0.051 Sum_probs=67.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcCcCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 195 ADTYNSAAFVNLGNCAMAREDY------VKGKELYVHALDNDATC--------IEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
..|++++.|..........|+. ++-+..|++++..-|.. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3566666666666666666666 66666666666554421 4445555543 4456777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
+..+...+.+|...|..-.++|+...|...+.+ ++.+.|...
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~-AiG~~~k~~ 128 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQK-AVERGAVPL 128 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTCBCH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HhccCCCcH
Confidence 666666666777777777777777777777777 777666544
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.93 E-value=7.7e-05 Score=56.24 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=78.9
Q ss_pred HhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD---SLECFHKLQAIV-P-SMPEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 286 (425)
.......+...|.+.+..++.+..+.+++|.++.+..+..+ ++..++..+... | ..-+.++.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445667777888888788889999999999999888776 999999998876 4 456789999999999999999
Q ss_pred HHHHHHHHHHhcCcchH
Q psy1863 287 ASDVNENLLLEAVRNDA 303 (425)
Q Consensus 287 A~~~~~~~a~~~~p~~~ 303 (425)
|+.+++. .++..|++.
T Consensus 93 A~~~~~~-lL~~eP~n~ 108 (126)
T 1nzn_A 93 ALKYVRG-LLQTEPQNN 108 (126)
T ss_dssp HHHHHHH-HHHHCTTCH
T ss_pred HHHHHHH-HHHhCCCCH
Confidence 9999999 999999988
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.77 E-value=0.00085 Score=51.74 Aligned_cols=107 Identities=9% Similarity=-0.067 Sum_probs=91.4
Q ss_pred cchHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863 163 EMTSSAATNLSFIYFLQGEV------EQAEKMAEEACTADTYN--------SAAFVNLGNCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (425)
|.+++.|..........|+. ++-++.|++|+..-|.. ...|...+.. ...++.++|...|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 88899999999888888999 88899999999876643 3446666644 667999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 229 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
++...+.+|...|..-.++|+...|...+.+++.+.|.....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 888889999999999999999999999999999998865443
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.76 E-value=0.00017 Score=56.90 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cc---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHH
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD---EM---------TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD---TYNSAA 202 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 202 (425)
++.....++..|.|+.|+-+...++ .. ...++..+|.+++..|+|..|...|++++... +.+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3455666677777777777666655 11 12356667777777777777777777766543 222211
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (425)
...++. ...+.. .... +...++.+.++.||..+|++++|+..++..-. ....+.+...||.+|
T Consensus 103 ~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred cccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 111100 000000 0111 23455666677777777777777766543211 113455555555543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.69 E-value=0.00045 Score=54.50 Aligned_cols=115 Identities=9% Similarity=-0.036 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCC---cchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 117 GYNWCVQSIRNSAH---SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEK 187 (425)
Q Consensus 117 ~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~ 187 (425)
-...+.......+. +....++...+|..++..|+|.+|...|++++ +....+...++. ...+.
T Consensus 42 La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~----~ss~p---- 113 (167)
T 3ffl_A 42 LSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN----SASTP---- 113 (167)
T ss_dssp HHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc----cCCCc----
Confidence 34444444433332 33456678899999999999999999999987 323222111110 00000
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy1863 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244 (425)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 244 (425)
.... .+...++.+.++.|+...|++++|+..++..-.. ..++.+...||.+|
T Consensus 114 ---~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 114 ---QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred ---cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 0111 1345577888999999999999999887653222 24577777777665
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.54 E-value=0.0037 Score=47.84 Aligned_cols=79 Identities=18% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 197 TYNSAAFVNLGNCAMARED---YVKGKELYVHALDNDA-TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 197 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
+-++.+.+++|.++....+ ..+++.+++..+...| ..-+.++.+|..+.++|+|++|..+.+..++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4566777777777777654 3467778888777777 35667778888888888888888888888888887776654
Q ss_pred HHH
Q psy1863 273 QIA 275 (425)
Q Consensus 273 ~la 275 (425)
...
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.50 E-value=0.0016 Score=49.25 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy1863 199 NSAAFVNLGNCAMARED---YVKGKELYVHALDNDAT-CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (425)
++.+.+++|.++.+..+ ..+++.+++..++.+|. .-+.++.+|..+.++|+|++|..+.+..++..|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34455555555554433 23455555555555552 3455556666666666666666666666666665555443
No 231
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.25 E-value=0.055 Score=49.73 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCH-
Q psy1863 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD---TYNS- 200 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~- 200 (425)
...+...+|..|+..|+|.+|.+++.+.. ....+++.....+|...+++.++...+.++.... +.++
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 33445678888888888888888887776 1224556666777778888888887777775443 1222
Q ss_pred ---HHHHHHHHHHH-HhcCHHHHHHHHHHHHhc
Q psy1863 201 ---AAFVNLGNCAM-AREDYVKGKELYVHALDN 229 (425)
Q Consensus 201 ---~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 229 (425)
.....-|..++ ..++|..|-.+|-+++..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 22344466667 677888887777777644
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.24 E-value=0.0038 Score=47.16 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHcCCH---HHHHHHHHhcc---c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy1863 134 AQDLEINKAVTFLRMNDV---SQAVDVLKSCD---E-MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFV 204 (425)
Q Consensus 134 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (425)
+.+..++.|+.+.+..+. .+++.+++..+ | ..-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 445556666666666533 34555555554 2 34455666666666666666666666666666666655543
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.17 E-value=0.0055 Score=46.90 Aligned_cols=52 Identities=8% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHH
Q psy1863 185 AEKMAEEACTADTY-NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236 (425)
Q Consensus 185 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (425)
++..++..+...|. .-+.++.+|..+.+.|+|++|..+.+..++..|++.++
T Consensus 61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44444444444442 22444445555555555555555555555555544443
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.11 E-value=0.066 Score=42.08 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C---------------CCCHH
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA--D---------------TYNSA 201 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~---------------p~~~~ 201 (425)
+.++.+++-.|.+..++-++... +...+.+.-+.||....+|..|+..++..+.- + |.+.+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhhhhcchHhHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 45566666666666666555543 44445555666666666666666666666621 1 22222
Q ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863 202 -AFVNLGNCAMAREDYVKGKELYVHALDNDA 231 (425)
Q Consensus 202 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (425)
.+..+|.++.+.|+.++|+.+|.......|
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 244456666666666666666666665544
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.79 E-value=0.07 Score=49.06 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC----HH--
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFL-QGEVEQAEKMAEEACTADTYN----SA-- 201 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~----~~-- 201 (425)
..+.+|..|...|++++-..++.... ...+.....+-..+.. -+..+.-+..+..+++-..+. ..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999998888776 2222333333333333 345555566666666543222 12
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDAT------CIEALYNLGLAHKHLNEYSDSLECFHKLQAIV---PSMP---- 268 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~---- 268 (425)
.-..+|..|+..|+|.+|.+.+.+.++-... -.+++..-..+|...|++.++...+.++.... +.+|
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2347899999999999999998888764211 25567777888999999999999998886553 1233
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Q psy1863 269 EVLYQIASLYE-ITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 269 ~~~~~la~~~~-~~g~~~~A~~~~~~~a~~~ 298 (425)
.....-|..+. ..++|..|...|-+ +.+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~e-af~~ 210 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYE-AFEG 210 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHH-HHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHH-HHhc
Confidence 23455677788 79999999999888 7643
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.64 E-value=0.17 Score=39.77 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=69.5
Q ss_pred HHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy1863 146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225 (425)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (425)
++-.+++.++-+-.-..|..++....++.+++..|+|..|+-++. .-+...+.+.-+.||...++|..|+.++++
T Consensus 13 ~kY~dYdt~~fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~ 87 (242)
T 3kae_A 13 IRYRDYETAIFLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLES 87 (242)
T ss_dssp HHTTCHHHHHHHHHHHC----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665533222226666666777888888888888776664 345566677777888888888888888888
Q ss_pred HHhc----C-------------cCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy1863 226 ALDN----D-------------ATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266 (425)
Q Consensus 226 al~~----~-------------~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 266 (425)
.+.- + |.+. ..+..+|.++.+.|+.++|+.++.......|-
T Consensus 88 il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 88 ILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 8732 2 2222 23344555556666666666666655555553
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.23 Score=46.75 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCH--
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD---------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACT---ADTYNS-- 200 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~-- 200 (425)
..+...++..+...|++.+|..++.... ....+.+.....+|...+++.+|...+.++.. ..+..+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3445566677777777777776666654 22345555666666666777776666666531 122222
Q ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 201 --AAFVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 201 --~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
..+...|..+...++|.+|-.+|..++..
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 23455566666666666666666666543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.042 Score=54.89 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HH-hcCHHHHHHHHHHHHhc--------CcCc----------HHHHHHH
Q psy1863 182 VEQAEKMAEEACTADTYNSAAFVNLGNCA--MA-REDYVKGKELYVHALDN--------DATC----------IEALYNL 240 (425)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~-~g~~~~A~~~~~~al~~--------~~~~----------~~~~~~l 240 (425)
++.|+..+++....+|.....+. .+.+. .. ..+--+|+....+.++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 46677777777777775543221 11111 11 12334556655555531 1111 2234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 241 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
+..+...|+++-|+.+-++++...|..-.+|+.|+.+|..+|+++.|+-.+..
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 66666777888888888888888888888888888888888888887766665
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.019 Score=57.32 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=80.5
Q ss_pred cCC-HHHHHHHHHhcc---cchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--------CCCCH----------HH
Q psy1863 148 MND-VSQAVDVLKSCD---EMTSSAATNLSFIYF---LQGEVEQAEKMAEEACTA--------DTYNS----------AA 202 (425)
Q Consensus 148 ~g~-~~~A~~~~~~~~---~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--------~p~~~----------~~ 202 (425)
.++ ++.|+.++++.. |.. .+++..+.+.. ...+--+|+....++++. .+.+. ..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 688999998877 322 23333333222 123445677777777642 22222 23
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
+..-+..+...|+++-|+++.++++...|+...+|+.|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455777788999999999999999999999999999999999999999999887665
No 240
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.049 Score=51.86 Aligned_cols=80 Identities=19% Similarity=0.107 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 246 (425)
..+..||.+....+.++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|.+++......+.+..|+...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888888899999999999999999999999988888888888888888888776678888888777654
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.83 E-value=0.26 Score=50.66 Aligned_cols=98 Identities=4% Similarity=-0.055 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cCcHHHHHHH
Q psy1863 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTA----DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND-ATCIEALYNL 240 (425)
Q Consensus 166 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l 240 (425)
...++.+-..|.+.|+.++|..+|.+..+. ...+..+|+.+...|.+.|+.++|.++|++..... .-+..+|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 334555555555555555555555443221 12344555555555555555555555555555431 1234445555
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhh
Q psy1863 241 GLAHKHLNE-YSDSLECFHKLQAI 263 (425)
Q Consensus 241 a~~~~~~g~-~~~A~~~~~~al~~ 263 (425)
-.++.+.|+ .++|...|+++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 555555554 24555555555443
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.75 E-value=0.065 Score=50.99 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy1863 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280 (425)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (425)
.+..+|.+..-...++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5678899988889999999999999999999999999999999999999999999999998887789999999888765
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.74 E-value=0.41 Score=49.23 Aligned_cols=103 Identities=5% Similarity=0.019 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Q psy1863 200 SAAFVNLGNCAMAREDYVKGKELYVHALDN----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPEVLYQI 274 (425)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 274 (425)
...+..+-..|.+.|+.++|...|...... ..-+..+|+.+-..|.+.|++++|.+.|++..... .-+..+|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 356888999999999999999999775532 23357899999999999999999999999997764 2378889999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhc--CcchH
Q psy1863 275 ASLYEITGD-VEQASDVNENLLLEA--VRNDA 303 (425)
Q Consensus 275 a~~~~~~g~-~~~A~~~~~~~a~~~--~p~~~ 303 (425)
..++.+.|+ .++|..++++ ..+. .|+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~E-M~~kG~~PD~v 237 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQ-MSQEGLKLQAL 237 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHH-HHHHTCCSHHH
T ss_pred HHHHHhCCCcHHHHHHHHHH-HHHcCCCCChh
Confidence 999999998 5789999999 5543 45544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.62 E-value=0.26 Score=45.51 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=77.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q psy1863 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKG-KELYVHALDNDATCIEALYNLGLAHKHLNEYS 251 (425)
Q Consensus 173 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 251 (425)
|......|+.+.|...+.+|+.+....+-.-.. ...|-.+ ...+++. ...+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQFVEPFATALVED------KVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHH
Confidence 333445688888888888888876332211000 0111111 1111111 1334566788888999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
+|+..+..++..+|-+..++..+..++...|+..+|+..|++ +..
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~-~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR-VKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999988 543
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.34 Score=38.78 Aligned_cols=101 Identities=18% Similarity=0.090 Sum_probs=58.9
Q ss_pred HHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q psy1863 144 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY 223 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (425)
..+..|+++.|.++.+.. ++...|..+|......|+++-|..+|.++-. +-.+...|...|+.+.-.+.-
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence 456677888887776664 5566777788888888888877777776432 223334445556655544443
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259 (425)
Q Consensus 224 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 259 (425)
+.+..... +.....+++.+|+++++++.|.+
T Consensus 84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33332221 11223345566677776666643
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.55 E-value=0.28 Score=45.27 Aligned_cols=108 Identities=11% Similarity=-0.035 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc-----cchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy1863 140 NKAVTFLRMNDVSQAVDVLKSCD-----EMTSSAATNLSFIYFLQGEVEQA-EKMAEEACTADTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 140 ~~a~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (425)
..|......|+.+.|...+.+++ +..+... .+.+-.+ ...+++. ...+...++..+...
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~ 184 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVED------KVLAHTAKAEAEIAC 184 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHC
Confidence 33455566789999999999987 1111110 0111111 1111111 112445677788899
Q ss_pred cCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 214 EDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
|++.+|+..+..++..+|-+-.++..+-.++...|+..+|+..|+++-+
T Consensus 185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987644
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.61 Score=37.29 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=49.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy1863 177 FLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256 (425)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 256 (425)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. +..+..+|.-.|+.+.-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3456666666665543 4556666666666666666666666665421 11233334444554433333
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
-+.+.... + +.....++..+|+++++++.|.+
T Consensus 83 a~iA~~~g--~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE--D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT--C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc--c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33322211 1 11122334556666666666655
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.45 E-value=0.26 Score=50.11 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=28.3
Q ss_pred HHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 144 TFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEA 192 (425)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 192 (425)
..+..|+++.|.++.+.. .++..|..+|..+...|+++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345566666666655443 44556666666666666666666666654
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.30 E-value=0.37 Score=41.32 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=80.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHH
Q psy1863 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254 (425)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 254 (425)
..+..|+.++|+......++.+|.+......+...+.-.|+|+.|.+-++.+.+++|+....-..+..+ =.|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHH
Confidence 356778999999999999999999999999999999999999999999999999998864432111111 0111
Q ss_pred HHHHHHHhh--CC---CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhcCcch
Q psy1863 255 ECFHKLQAI--VP---SMPEVLY---QIASLYEITGDVEQASDVNENLLLEAVRND 302 (425)
Q Consensus 255 ~~~~~al~~--~p---~~~~~~~---~la~~~~~~g~~~~A~~~~~~~a~~~~p~~ 302 (425)
..=.+.+.- .| ..+..|. .-+......|+.++|...-.+ +.+.-|..
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~-A~e~ap~~ 133 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ-IEELRQEK 133 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH-HHhcCccc
Confidence 111222221 12 2333333 334455567999999888888 87776543
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=2.3 Score=39.84 Aligned_cols=184 Identities=5% Similarity=-0.007 Sum_probs=107.0
Q ss_pred hhhhhhHHHHHHHHHh---cCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc---cchHHH---HHHHHHHHHH-cCC
Q psy1863 112 DNFSNGYNWCVQSIRN---SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD---EMTSSA---ATNLSFIYFL-QGE 181 (425)
Q Consensus 112 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~lg~~~~~-~g~ 181 (425)
+++..+.+.+...-+. .........+...+...+...|+++...+.+.-.. .....+ ......-+.. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4555555554443332 23333345666677788888899988766554433 111111 1111111211 111
Q ss_pred HHHHHHHHHHHHhcC----CC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----Cc--CcHHHHHHHHHHH
Q psy1863 182 VEQAEKMAEEACTAD----TY-------NSAAFVNLGNCAMAREDYVKGKELYVHALDN----DA--TCIEALYNLGLAH 244 (425)
Q Consensus 182 ~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~--~~~~~~~~la~~~ 244 (425)
.+. ......+..- .+ .......|+.++...|++.+|...+.....- .+ .-...+.....+|
T Consensus 110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 111 1111122111 11 2344677899999999999999888887632 11 1155777788888
Q ss_pred HHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 245 KHLNEYSDSLECFHKLQA---IVPSMP----EVLYQIASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 245 ~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
...+++..|...+.++.. ..+..+ ..+...|..+...++|.+|..+|.. +...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e-~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE-IYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHhc
Confidence 899999999988888632 233333 3456778888888999999888888 6653
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.87 E-value=0.4 Score=41.05 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCcchH
Q psy1863 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA 303 (425)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~p~~~ 303 (425)
-..+.|.+++|++.....++..|.+......+..+++-.|+++.|..-++. +.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~-~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ-SIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCchhh
Confidence 345678889999999999999999999988899999999999999999988 888888866
No 252
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.83 E-value=0.47 Score=48.17 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=62.5
Q ss_pred HHHHcCCHHHHHH-HHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q psy1863 144 TFLRMNDVSQAVD-VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL 222 (425)
Q Consensus 144 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 222 (425)
.....+++++|.. ++... +. ......+...+...|.+++|+...+ ++...+ ......|++++|.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-EG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDL 674 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-CC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcC-Cc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHH
Confidence 3345667776665 33211 20 1122444555555666666554432 111111 223455666666555
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI--------VPSMPEVLYQIASLYEITGDVEQASDVNE 292 (425)
Q Consensus 223 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (425)
.+. .++...|..+|..+.+.|+++.|..+|.++-.. ...+...+..++......|++..|..+|.
T Consensus 675 ~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 675 LTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 322 244556666666666666666666666554111 12334444444555555555555544443
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.31 Score=45.60 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cCc----HH
Q psy1863 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT---YNSAAFVNLGNCAMAREDYVKGKELYVHALDND--ATC----IE 235 (425)
Q Consensus 165 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~----~~ 235 (425)
...++..+|..|...|++++|.+.|.++..... .....+..+..++...+++..+..++.++.... ..+ ..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345667788888888888888888877765532 234667777778888888888888888876541 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy1863 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265 (425)
Q Consensus 236 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 265 (425)
.....|.++...++|.+|-..|-.++....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 444567777888999999999888876654
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.90 E-value=0.99 Score=48.03 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEA 192 (425)
Q Consensus 163 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 192 (425)
+.++...+.+|.++...|++++|..+|+++
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444455555555555555555555554
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.097 Score=49.51 Aligned_cols=124 Identities=6% Similarity=-0.033 Sum_probs=57.7
Q ss_pred HHHHHHcCCHHHHHHHHHhcc--------------cchHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh---
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD--------------EMTSSAATNLSFIYFLQGEVEQAEK----------MAEEACT--- 194 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~----------~~~~al~--- 194 (425)
-..++..+++++|.++-...+ .-.+.+|+..+.++...|+...... .+-.+++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 345567788888887765443 4456678888888877777665321 2222222
Q ss_pred --cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863 195 --ADTYN-SAAFVNLGNCAMAREDYVKGKELYVHALDNDATC-------IEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 195 --~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 264 (425)
.++.. ...++.+-..|...+.|+.|..+..++. .|.. ...++.+|.++.-.++|.+|.+++..|++..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22322 3557778888999999999999999985 3321 4567788999999999999999999999987
Q ss_pred CCC
Q psy1863 265 PSM 267 (425)
Q Consensus 265 p~~ 267 (425)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.85 E-value=0.52 Score=44.11 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCH----HH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD------EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNS----AA 202 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~ 202 (425)
.+....+|..+...|++++|.++|.++. ....+.+..+..++...+++..+..++.++-... ..++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3445789999999999999999999987 4567888889999999999999999999986552 2222 23
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDA 231 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (425)
....|..+...++|.+|-.+|-.++....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 44557778889999999999998876643
No 257
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.24 E-value=2.9 Score=31.68 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHhcccchHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy1863 148 MNDVSQAVDVLKSCDEMTSSAATNLS-FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226 (425)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (425)
.|+...-+.+|-+.- ...+ +..+| .....+|+-++-.+.+...+...+-++..++.+|.+|.+.|+..+|.+.+.+|
T Consensus 74 C~NlKrVi~C~~~~n-~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 445555555554442 1111 12222 23344566666555555555555556666666666666666666666666666
Q ss_pred Hhc
Q psy1863 227 LDN 229 (425)
Q Consensus 227 l~~ 229 (425)
.+.
T Consensus 152 C~k 154 (172)
T 1wy6_A 152 CKK 154 (172)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.52 E-value=3.1 Score=39.45 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=79.6
Q ss_pred cchhhHHHHHHHHHHHHcCCHHHHH--------------HHHHhcc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 131 SSLAQDLEINKAVTFLRMNDVSQAV--------------DVLKSCD-----EMTSSAATNLSFIYFLQGEVEQAEKMAEE 191 (425)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~g~~~~A~--------------~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 191 (425)
..+++.+|+-.+.++-..|+..... ..++.+. ...+..++.+-..|...+.+++|..+..+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 3445666665555565566554321 1233333 34567788889999999999999999999
Q ss_pred HHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcH-------HHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 192 ACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI-------EALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 192 al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~ 257 (425)
+. .|.+ ...++.+|.++.-+++|.+|..++..|+...|.+. .++..+..+-.-+|+..+- ..|
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf 333 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFF 333 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHH
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCCh-HHh
Confidence 85 4432 34578889999999999999999999999877542 2333344444445664431 111
Q ss_pred HHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q psy1863 258 HKLQAIVPSM---PEVLYQIASLYEITGDVEQ 286 (425)
Q Consensus 258 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 286 (425)
..|.. ...|..++.++ +.|+...
T Consensus 334 -----~q~~l~~~L~pY~~Lv~Av-r~GdL~~ 359 (523)
T 4b4t_S 334 -----HQSNMQKSLLPYYHLTKAV-KLGDLKK 359 (523)
T ss_dssp -----TTTSCHHHHHHHHHHHHHH-HHTCHHH
T ss_pred -----hchhHHHHHHHHHHHHHHH-HcCCHHH
Confidence 11222 23466666665 4576654
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.07 E-value=1.1 Score=47.70 Aligned_cols=118 Identities=12% Similarity=-0.058 Sum_probs=86.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C------------------
Q psy1863 172 LSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN---D------------------ 230 (425)
Q Consensus 172 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------------------ 230 (425)
+...+...|.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-.. +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555566654433 33456778888899999999999999999999887421 0
Q ss_pred --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 231 --ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS-MP----EVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 231 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
...+..|..+..++.+.|.++.+++....|++..+. +. ..|.++-..+..+|+|++|...+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 112456677888888999999999999999987653 32 2577788888999999999777655
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.67 E-value=13 Score=36.28 Aligned_cols=161 Identities=11% Similarity=0.021 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcc----------------cchHH-------------HHHHHHHHHHHcCCHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCD----------------EMTSS-------------AATNLSFIYFLQGEVEQA 185 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~----------------~~~~~-------------~~~~lg~~~~~~g~~~~A 185 (425)
.+.........+..|+...|..+...+- |.... ....++.......+.+.|
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A 233 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENA 233 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHH
Confidence 3334455667777788777776655531 22111 122334445556688888
Q ss_pred HHHHHHHHhcCCCCHHH----HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 186 EKMAEEACTADTYNSAA----FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 186 ~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
...+.......+.+... +..++......+...++...+.+.....+++...-...+. ..+.|+++.|...|...-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 234 RLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSC
T ss_pred HHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHHHHHHcc
Confidence 88888776544444332 2233333334453556777777766554444433334444 446799999999997654
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 262 AIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
...+..+...+-+|..+..+|+.++|..+|++ +..
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~-~a~ 347 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQ-LMQ 347 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH-HHT
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHH-Hhc
Confidence 43335677889999999999999999999998 654
No 261
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=90.55 E-value=0.47 Score=32.64 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
..++...++.+|+..-..|+|++|+..+++|+..-
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999998755
No 262
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=88.49 E-value=0.71 Score=31.77 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+..+...++.+|+..-..|+|++|+.++++|+..-
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999998754
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.17 E-value=19 Score=37.01 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHcCCHHHHHHHHHhccc----c----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C---CH----HHHHHH
Q psy1863 145 FLRMNDVSQAVDVLKSCDE----M----TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT---Y---NS----AAFVNL 206 (425)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~l 206 (425)
....|+.++++..+.+.++ . ..-+.+.+|.++...+ .+++.++...+..+. . +. .+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 4455777788988888874 1 2445666777666555 467887777775432 1 11 345677
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy1863 207 GNCAMAREDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284 (425)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (425)
|.++...++ +++...+...+..+... ..+-..+|.++...|+-+.....+..+.....+...-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 777776665 46677777777644322 235567788888888866555555555543222222223344445566787
Q ss_pred HHHHHHHHH
Q psy1863 285 EQASDVNEN 293 (425)
Q Consensus 285 ~~A~~~~~~ 293 (425)
+.+-...+.
T Consensus 541 e~~~~li~~ 549 (963)
T 4ady_A 541 ELADDLITK 549 (963)
T ss_dssp GGGHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666665
No 264
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=86.50 E-value=1 Score=31.71 Aligned_cols=35 Identities=6% Similarity=0.037 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+..+...++..|+..-..|+|++|+..+.+|+..-
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999998765
No 265
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=84.86 E-value=1.4 Score=30.39 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+..+...++.+|+..-..|+|++|+..+.+|+..-
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999998865
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.20 E-value=1.4 Score=30.51 Aligned_cols=32 Identities=6% Similarity=-0.013 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 14 EIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 14 ~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+...|+.+|+..-..|+|++|+..|.+|+..-
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999998755
No 267
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=83.94 E-value=1.4 Score=32.58 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 10 RMEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+..+...|+.+|+..-..|+|++|+.+|.+|+..-
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 355778899999999999999999999999999865
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.95 E-value=11 Score=39.23 Aligned_cols=48 Identities=13% Similarity=-0.049 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH----HHHHHHHHHHHc
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIV-PSMPE----VLYQIASLYEIT 281 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~----~~~~la~~~~~~ 281 (425)
...|.....++...+-++-++...+.|++.. ++++. .|..+-......
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 4467788888888899999999998888754 34443 444444444433
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.05 E-value=31 Score=30.35 Aligned_cols=113 Identities=6% Similarity=-0.029 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q psy1863 135 QDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA-----DTYNSAAFVNLGNC 209 (425)
Q Consensus 135 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 209 (425)
...+..++.-|.+++++++|++++... +..+...|++..|.....-.++. .|-+......+..+
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344456677777788888888765543 33333344444443332222211 12223333333333
Q ss_pred HHHhcCHH-HHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy1863 210 AMAREDYV-KGKELYVHALDN-------DATCIEALYNLGLAHKHLNEYSDSLECFH 258 (425)
Q Consensus 210 ~~~~g~~~-~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 258 (425)
+.....-+ .=.++.+++++- .-.++..+..+|..|...|++.+|..+|-
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 32211000 012222333321 22468888888888888888888888774
No 270
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=79.38 E-value=3.2 Score=28.31 Aligned_cols=31 Identities=23% Similarity=0.110 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhHHhccccHHHHHHHHHHhh
Q psy1863 12 EQEIIGLIDESCICARNQDFKAALEKAKLAS 42 (425)
Q Consensus 12 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~ 42 (425)
+.+++.++..|..+...|+|.+|+-.++++.
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4679999999999999999999999998876
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.14 E-value=37 Score=30.16 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy1863 232 TCIEALYNLGLAHKHLNEYSDSLECF 257 (425)
Q Consensus 232 ~~~~~~~~la~~~~~~g~~~~A~~~~ 257 (425)
.++..+..+|..|.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 56888889999999999999988887
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.63 E-value=36 Score=34.98 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc-cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1863 137 LEINKAVTFLRMNDVSQAVDVLKSCD-EMT----SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAM 211 (425)
Q Consensus 137 ~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (425)
.-+.+|.++.-.++- ++.+.+...+ .+. ..+-..+|.++...|+-+-....+..+.+...+...-...+|..+.
T Consensus 457 AaLGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 457 ASLGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 345666666666553 4555555555 121 2345567777777787766666666555543333333344444455
Q ss_pred HhcCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHALDNDATC--IEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
..|+.+.+-...+......... ..+-..+|..|...|+...-...+..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 5666665555555444322111 1223456677777887433333444444
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.92 E-value=29 Score=36.00 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=62.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV--------------------- 264 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------- 264 (425)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.--
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 445556666665443 3445566666666777777777777777777777653210
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-cchH
Q psy1863 265 PS--MPEVLYQIASLYEITGDVEQASDVNENLLLEAV-RNDA 303 (425)
Q Consensus 265 p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~-p~~~ 303 (425)
+. ....|..+..++...+-++-++++.+. |+... ++++
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l-AI~~~~~dd~ 932 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLL-ADASKETDDE 932 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCCSCCH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhcccCCc
Confidence 01 123678899999999999999999999 99753 4444
No 274
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=74.28 E-value=31 Score=29.25 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNK 44 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~ 44 (425)
..++..|...-+.++|++..+..++.++.
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~ 60 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGM 60 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 45788888888999999999998887654
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.78 E-value=35 Score=27.68 Aligned_cols=77 Identities=13% Similarity=-0.025 Sum_probs=53.9
Q ss_pred HHHHHHHhc---------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy1863 221 ELYVHALDN---------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASD 289 (425)
Q Consensus 221 ~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 289 (425)
.++++++.. +|....+|...+..+ ..+...++...|.-..... ...+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456666653 344456677666654 2344678888887776654 3466777888888899999999999
Q ss_pred HHHHHHHhcC
Q psy1863 290 VNENLLLEAV 299 (425)
Q Consensus 290 ~~~~~a~~~~ 299 (425)
.|+. +++..
T Consensus 137 Vy~~-GI~~~ 145 (202)
T 3esl_A 137 LLEL-GAENN 145 (202)
T ss_dssp HHHH-HHHTT
T ss_pred HHHH-HHHcC
Confidence 9998 88764
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.46 E-value=13 Score=24.59 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 205 NLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
.+|..+...|++++|..+|-+|+...|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3444444455555555555555554444
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.87 E-value=19 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (425)
..+|..+...|++++|..+|-+|+...|.-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777655443
No 278
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=66.20 E-value=55 Score=27.32 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNK 44 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~ 44 (425)
..++..|...-+.|+|++..+..++.+..
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~ 34 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGM 34 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcc
Confidence 34777888888889999999999887764
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.41 E-value=74 Score=28.21 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHh-------c
Q psy1863 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVE-QAEKMAEEACT-------A 195 (425)
Q Consensus 132 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~-------~ 195 (425)
..+.++.+.-+..+++.|+...|.++..-.+ +.+......+..++.....-+ .=..+.+++++ .
T Consensus 52 ~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~ 131 (336)
T 3lpz_A 52 AAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDY 131 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCC
Confidence 3356666666777777777777766543333 334445555565555443211 11223333332 2
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy1863 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275 (425)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (425)
.-.++..+..+|..|.+.+++.+|..+|- +. ..+.+..+..+-.-+...+ .|...+.+...+
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQD---------------ESHTAPLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHH
Confidence 34578889999999999999999988873 21 1122334333222222221 234445554444
Q ss_pred H-HHHHcCCHHHHHHHHHH
Q psy1863 276 S-LYEITGDVEQASDVNEN 293 (425)
Q Consensus 276 ~-~~~~~g~~~~A~~~~~~ 293 (425)
. .|...++...|...+..
T Consensus 194 VL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4 46778888888776555
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=64.90 E-value=39 Score=26.33 Aligned_cols=60 Identities=15% Similarity=0.007 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--H----HHHHH---HHHHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSM--P----EVLYQ---IASLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 238 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~----~~~~~---la~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
+..|..++..|+|=+|.+.++......+.. . ..+.+ .|..+...|+...|...+.+ ++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~-Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRT-SLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHH
Confidence 456777788899999999999988876544 2 22233 34455678999999999999 8763
No 281
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=64.60 E-value=63 Score=27.17 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNK 44 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~ 44 (425)
..|+..|...-+.++|++..+..++.++.
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~ 33 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTEL 33 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34788889999999999999998887654
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.48 E-value=61 Score=26.28 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q psy1863 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD--TYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230 (425)
Q Consensus 164 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (425)
.....|...+..+ ..+...++...|....... ...+..|...|..+...|++.+|...|+.+++..
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344555555543 1333556666666665443 4455666777777777777777777777777664
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=59.66 E-value=19 Score=29.37 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (425)
...+.+|.+++..++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345556666666666666666666666655543
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=57.46 E-value=21 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQ 261 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al 261 (425)
+..+...+..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566777777788888877776654
No 285
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.47 E-value=1.6e+02 Score=28.75 Aligned_cols=93 Identities=17% Similarity=0.086 Sum_probs=58.0
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy1863 122 VQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA 201 (425)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (425)
...+...+..+....+...--..+.+.+++..-+..+.. .|.+..............|+-.+|.....++.......+.
T Consensus 59 ~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~ 137 (618)
T 1qsa_A 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN 137 (618)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH
Confidence 344444455555544444434445567888877776665 3777777777888888889988888877777665554444
Q ss_pred HHHHHHHHHHHhcC
Q psy1863 202 AFVNLGNCAMARED 215 (425)
Q Consensus 202 ~~~~la~~~~~~g~ 215 (425)
....+-..+...|.
T Consensus 138 ~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 138 ACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
Confidence 44444444444343
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.33 E-value=52 Score=25.69 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHhc---------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHH
Q psy1863 220 KELYVHALDN---------DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP--SMPEVLYQIASLYEITGDVEQAS 288 (425)
Q Consensus 220 ~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~ 288 (425)
..++++++.. +|....+|...+... +++.+.|..+....- ..+..|...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHHHHHHhcCcc
Q psy1863 289 DVNENLLLEAVRN 301 (425)
Q Consensus 289 ~~~~~~a~~~~p~ 301 (425)
..|+. +++....
T Consensus 117 ~Iy~~-Gi~~~A~ 128 (164)
T 2wvi_A 117 AIFQE-GIQQKAE 128 (164)
T ss_dssp HHHHH-HHHTTCB
T ss_pred HHHHH-HHHcCCC
No 287
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=54.25 E-value=21 Score=25.01 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcC
Q psy1863 204 VNLGNCAMAREDYVKGKELYVHALDNDAT 232 (425)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (425)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566666666666666666666666554
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=53.55 E-value=33 Score=32.00 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDA----------TCIEALYNLGLAHKHLNEYSDSLECFHKLQAI-VPSM 267 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 267 (425)
...+-.+|++.|+...+...++..-...+ .....++.+|..+...++|.+|.+++..|++. .|..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34556778888888888777765433221 12456788899999999999999999999888 6644
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.14 E-value=28 Score=24.05 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEE 191 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~ 191 (425)
..+..+...|+|++||++.++
T Consensus 20 RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHH
Confidence 344444444444444444433
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.14 E-value=44 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCc
Q psy1863 201 AAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233 (425)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (425)
...+.+|..++..++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 346667777777777777777777777776654
No 291
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.68 E-value=39 Score=31.50 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------C--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcCc
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACTADT--------Y--NSAAFVNLGNCAMAREDYVKGKELYVHALDN-DATC 233 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 233 (425)
..+-.+|++.|+..-+...++..-...+ . -....+.+|..++..++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3455788899998888887765433221 1 1345788999999999999999999999988 7654
No 292
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=47.87 E-value=95 Score=24.02 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Q psy1863 139 INKAVTFLRMNDVSQAVDVLKSCD--EMTSSAATNLSFIYFLQGEVEQA-EKMAEEACTA--DTYNSAAFVNLGNCAMAR 213 (425)
Q Consensus 139 ~~~a~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~--~p~~~~~~~~la~~~~~~ 213 (425)
+..+...+-..+|.+.+..++..- .....+.+.||..|....++.+- .......+.+ +|..... .++...
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~Y-----WIyiGR 86 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLY-----WIYIGR 86 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHH-----HHHHcC
Confidence 344666777778888887777766 34456677777777776655422 2222222221 1222222 344456
Q ss_pred cCHHHHHHHHHH
Q psy1863 214 EDYVKGKELYVH 225 (425)
Q Consensus 214 g~~~~A~~~~~~ 225 (425)
|++++|+...+.
T Consensus 87 g~~~eAlDiA~~ 98 (161)
T 2ynq_A 87 SQSEEALELART 98 (161)
T ss_dssp TCHHHHHHHHHH
T ss_pred CchHHHHHHHHh
Confidence 777777766544
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.12 E-value=67 Score=24.71 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy1863 232 TCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAV 299 (425)
Q Consensus 232 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~ 299 (425)
....+|...+... +++.+.|.-..... ...+..|...|..+...|++.+|...|+. +++..
T Consensus 69 RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~-Gi~~~ 131 (152)
T 4a1g_A 69 RFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR-GIQNQ 131 (152)
T ss_dssp HHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcC
Confidence 3355565555432 34777777766544 35667788888999999999999999999 88764
No 294
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=46.71 E-value=1e+02 Score=25.63 Aligned_cols=179 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHHHHHHHHHHHhh-CCCcccccchhcchhhhhcchhhcccchhHHHHHHHHHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQF-GHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHE 94 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 94 (425)
..++..|...-+.++|++..+..++.++.. +. +.....-+.++|-|
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~--------~eLs~EERnLLSvaYKN------------------------- 55 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKG--------EELSCEERNLLSVAYKN------------------------- 55 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CCCCHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CcCCHHHHHHHHHHHHh-------------------------
Q ss_pred HHHHHHHhhhhhhhchhhhhhhh-------HHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHH
Q psy1863 95 AEKCILTSAKLIAPSIEDNFSNG-------YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 167 (425)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (425)
.......+++.++..-...-..| .......+.. .....+.++.-.+-..+.-...-.++.-.|.+...+..+
T Consensus 56 vig~rR~swRiissieqke~~~~~~~~~~~i~~yr~kie~-EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyR 134 (236)
T 3iqu_A 56 VVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVET-ELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYR 134 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYNS----AAFVNLGNCAMAREDYVKGKELYVHALD 228 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (425)
.+...+.---+..--+.|...|+.|.++. |.+| -+++.-.-.|.-.++.++|....++++.
T Consensus 135 YlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 135 YLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 295
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=45.50 E-value=23 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.027 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+++.-+|......|+|++|.++.++|-+.-
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 50 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAGSCI 50 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4566677788888999999999998886533
No 296
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=45.09 E-value=24 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=25.2
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+++.-+|......|+|++|.++.++|-+.-
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 48 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQSRMAL 48 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999886643
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=44.56 E-value=28 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy1863 171 NLSFIYFLQGEVEQAEKMAEEACTADT 197 (425)
Q Consensus 171 ~lg~~~~~~g~~~~A~~~~~~al~~~p 197 (425)
.+|..+...|+++.|+.+|-+|+...|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 456666666666666666666665544
No 298
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=43.05 E-value=72 Score=28.49 Aligned_cols=30 Identities=7% Similarity=-0.224 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 267 MPEVLYQIASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
....|..+|..+++.+++.+|+..+.. +..
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~-Aa~ 324 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVD-AGY 324 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHH-HHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHH-HHH
Confidence 445555666666666666666666666 544
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.33 E-value=55 Score=27.04 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy1863 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIV--PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAV 299 (425)
Q Consensus 234 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~a~~~~ 299 (425)
..+|...+.. .+++...|.-+.... ...+..|...|..+...|++.+|...|+. +++..
T Consensus 120 LklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~-Gi~~~ 180 (223)
T 4aez_C 120 LRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK-GKRMK 180 (223)
T ss_dssp HHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcC
Confidence 4455555542 135556665555443 34556677777778888888888888887 77654
No 300
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=42.18 E-value=1e+02 Score=23.88 Aligned_cols=76 Identities=12% Similarity=0.227 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcCCHHH-HHHHHHhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 117 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQ-AVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEA 192 (425)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 192 (425)
.|..++..++.-....+.....+.+|..|....++.. ........+.....-.+.+=.+|...|++++|+......
T Consensus 23 dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 23 KYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp CHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcCCchHHHHHHHHhc
Confidence 4666777777766667777888999999999876653 333333333222222333445666679999999887653
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.82 E-value=1.2e+02 Score=23.52 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=10.2
Q ss_pred HHHhcCHHHHHHHHHHHHh
Q psy1863 210 AMAREDYVKGKELYVHALD 228 (425)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~ 228 (425)
+.+.|+..-|...+.+++.
T Consensus 85 H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 85 HFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHCCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3445555555555555544
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=41.37 E-value=76 Score=22.03 Aligned_cols=55 Identities=9% Similarity=-0.109 Sum_probs=31.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q psy1863 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMP----EVLYQ--IASLYEITGDVEQASDVNENLLLE 297 (425)
Q Consensus 240 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~--la~~~~~~g~~~~A~~~~~~~a~~ 297 (425)
.|..++..|+|=+|.+.++......|+.. ..+.+ .|..+...|+. |...+.+ ++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~-a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRK-AEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHH-HHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH-HHH
Confidence 45556666777777777777776664321 12222 23334455666 6666666 554
No 303
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=41.16 E-value=30 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=25.0
Q ss_pred HHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 15 IIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 15 ~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
.+++.-+|......|+|++|.++.++|-+.-
T Consensus 22 Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l 52 (109)
T 3k1s_A 22 ARSFAMEALQFAKQGKMAEADEAMVKAKEAI 52 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567777888889999999999998886533
No 304
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.11 E-value=1.1e+02 Score=27.32 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc-----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 198 YNSAAFVNLGNCAMAR--EDYVKGKELYVHALDN-----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 198 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
..|.++-+||.+--.. .....++.+|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-..
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 3455566666554322 1122378888888865 3344667788888999999999999998877554
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.04 E-value=29 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDN 229 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (425)
...+|.-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345666677777777777777777653
No 306
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=40.01 E-value=6 Score=33.54 Aligned_cols=33 Identities=6% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 13 QEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 13 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
....+|+.+|+.+-..|+|++|+..|++|+..-
T Consensus 21 ~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~L 53 (257)
T 2ymb_A 21 TAAATVLKRAVELDSESRYPQALVCYQEGIDLL 53 (257)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999998755
No 307
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=39.96 E-value=31 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+++.-.|......|+|++|.+++++|-+.-
T Consensus 38 RS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l 67 (120)
T 3l8r_A 38 RSIVHEAFDAMREKNYILAEQKLQEANDEL 67 (120)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445566777788999999999999886533
No 308
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.69 E-value=2.2e+02 Score=25.69 Aligned_cols=89 Identities=8% Similarity=-0.059 Sum_probs=55.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Q psy1863 174 FIYFLQGEVEQAEKMAEEACTAD-----------------TYNSAAFVNLGNCAMAREDYVKGKELYVHALDN------- 229 (425)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 229 (425)
.+.....+.++|++++++....- .....+...++..|...|+.++|..+.+++-..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34455667777777777653221 011234566777788888888888887777543
Q ss_pred Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 230 DA-TCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 230 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 262 (425)
+| -+...+...+..+...+++..+....-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 1244555567777777888777766666654
No 309
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=37.41 E-value=1e+02 Score=21.38 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=34.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcCc----HHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 206 LGNCAMAREDYVKGKELYVHALDNDATC----IEALYN--LGLAHKHLNEYSDSLECFHKLQA 262 (425)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~--la~~~~~~g~~~~A~~~~~~al~ 262 (425)
.|..++..|+|=+|-+.++......|.. ...+.. .|..+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4555667788888888888877766442 112222 33444456776 8888887766
No 310
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.59 E-value=35 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 170 TNLSFIYFLQGEVEQAEKMAEEACT 194 (425)
Q Consensus 170 ~~lg~~~~~~g~~~~A~~~~~~al~ 194 (425)
..+|.-|...|+|+.|+.+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3556666667777777777766654
No 311
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.97 E-value=45 Score=25.49 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 8 FERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
++.+-....+|+.+|..+...|+.+.|.-.+-+++.+-
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44456667999999999999999999999998877766
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.91 E-value=85 Score=25.31 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy1863 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274 (425)
Q Consensus 239 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (425)
..-.++.+.|.+++|.+.+++....++.+......|
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 344567778888888888888777665554443333
No 313
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.63 E-value=2.5e+02 Score=24.49 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=88.8
Q ss_pred CcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcc--------cchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc-----
Q psy1863 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCD--------EMTSSAATNLSFIYFLQGEVE-QAEKMAEEACTA----- 195 (425)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~----- 195 (425)
....+.++.+.-+..+++.|+...|.++..-.+ +.+......+..++.....-+ .=.++.+++++-
T Consensus 48 ~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 48 SYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFS 127 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcC
Confidence 334577777888899999999999887643333 445556666776665533211 113444444432
Q ss_pred --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHH
Q psy1863 196 --DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL---NEYSDSLECFHKLQAIVPSMPEV 270 (425)
Q Consensus 196 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~ 270 (425)
.-.++..+..+|..+...|++.+|..+|-. -+.+++..+..+-.-+... |. |...+.
T Consensus 128 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~---~~~~s~~~~a~~l~~w~~~~~~~~---------------~~e~dl 189 (312)
T 2wpv_A 128 EYKFGDPYLHNTIGSKLLEGDFVYEAERYFML---GTHDSMIKYVDLLWDWLCQVDDIE---------------DSTVAE 189 (312)
T ss_dssp SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHTTCCC---------------HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh---CCCccHHHHHHHHHHHHHhcCCCC---------------cchHHH
Confidence 235789999999999999999999888752 1112344333322222222 22 222333
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHH
Q psy1863 271 LYQIA-SLYEITGDVEQASDVNEN 293 (425)
Q Consensus 271 ~~~la-~~~~~~g~~~~A~~~~~~ 293 (425)
+...+ ..|..+|+...|...+..
T Consensus 190 f~~RaVL~yL~l~n~~~A~~~~~~ 213 (312)
T 2wpv_A 190 FFSRLVFNYLFISNISFAHESKDI 213 (312)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33333 346678999999888776
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.76 E-value=1.3e+02 Score=27.47 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy1863 268 PEVLYQIASLYEITGDVEQASDVNEN 293 (425)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (425)
...|..+|..+++.+++.+|+..+..
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~ 343 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWAD 343 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHH
Confidence 33444444455555555555555444
No 315
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.43 E-value=1.8e+02 Score=26.55 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhc-----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 199 NSAAFVNLGNCAMARED--YVKGKELYVHALDN-----DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 199 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
.+.++-+||.+--..-- -..++.+|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-..
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 34555555554332111 11367788888765 2344667788899999999999999998877554
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=31.26 E-value=2.4e+02 Score=25.81 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy1863 235 EALYNLGLAHKHLNEYSDSLECFHKL 260 (425)
Q Consensus 235 ~~~~~la~~~~~~g~~~~A~~~~~~a 260 (425)
..|..+|-.+.+.+++.+|+..+-.+
T Consensus 304 YPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cceeecchHHHHhhhHHHHHHHhhhh
Confidence 33444444555555555555555444
No 317
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.54 E-value=1.4e+02 Score=27.23 Aligned_cols=79 Identities=14% Similarity=-0.045 Sum_probs=49.1
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q psy1863 204 VNLGNCAMARE---DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI-----VPSMPEVLYQIA 275 (425)
Q Consensus 204 ~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la 275 (425)
..|-..++..| +|.-|+..+-..-++.|.... ..++..|++++.. .......|..+|
T Consensus 246 q~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlg 310 (489)
T 4gq4_A 246 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLA 310 (489)
T ss_dssp HHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcccceeecc
Confidence 33444444443 466666666666666554311 1234455555543 224567788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Q psy1863 276 SLYEITGDVEQASDVNENLLLEA 298 (425)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~a~~~ 298 (425)
-.+.+.+++.+|+..+.. +...
T Consensus 311 G~~~R~~~~~eAl~~wa~-aa~V 332 (489)
T 4gq4_A 311 GYHCRNRNVREALQAWAD-TATV 332 (489)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHH
T ss_pred hHHHHhhhHHHHHHHhhh-hhhh
Confidence 999999999999999988 7654
No 318
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=29.63 E-value=1.9e+02 Score=22.06 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=13.0
Q ss_pred HHHHHHcCCHHHHHHHHHhcc
Q psy1863 142 AVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~~ 162 (425)
|.-....|..++.+++..+..
T Consensus 14 AK~~ildG~v~qGveii~k~~ 34 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEIT 34 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHc
Confidence 445555666666666666655
No 319
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.54 E-value=85 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=9.9
Q ss_pred HHhcCHHHHHHHHHHHHh
Q psy1863 211 MAREDYVKGKELYVHALD 228 (425)
Q Consensus 211 ~~~g~~~~A~~~~~~al~ 228 (425)
-..|+|++|+.+|..+++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445556665555555553
No 320
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=28.29 E-value=99 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q psy1863 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248 (425)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 248 (425)
....|...+..|+|.-|.+....++..+|++..+...++.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666665554
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.09 E-value=2.5e+02 Score=23.08 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy1863 218 KGKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264 (425)
Q Consensus 218 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 264 (425)
++..+|..+... ....+..|...|..+...|++.+|...|+..++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444433 23445555556666666666666666666665544
No 322
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.92 E-value=2.8e+02 Score=23.48 Aligned_cols=181 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHhhHHhccccHHHHHHHHHHhhHHH--HHHHHHHHhhCCCcccccchhcchhhhhcchhhcccchhHHHHHHHHH
Q psy1863 16 IGLIDESCICARNQDFKAALEKAKLASNKE--RVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKH 93 (425)
Q Consensus 16 ~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~ 93 (425)
..++..|...-+.++|++..+..++++... . .++-.. +.+......
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~-----------------eLt~EE---------------RnLLSvaYK 56 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSE-----------------ELTVEE---------------RNLLSVAYK 56 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSS-----------------CCCHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCC-----------------CCCHHH---------------HHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHh------cCCcchhhHHHHHHHHHHHHcCCHHHHHHHHHhcccchHH
Q psy1863 94 EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN------SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS 167 (425)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (425)
........+++.++..-...-..+-......++. ......+.++.-.+-..+.-...-.++.-.|.+...+..+
T Consensus 57 Nvig~rR~swRiissieqke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyR 136 (260)
T 1o9d_A 57 NVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHR 136 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q psy1863 168 AATNLSFIYFLQGEVEQAEKMAEEACTAD-----TYNS---AAFVNLGNCAMA-REDYVKGKELYVHALD 228 (425)
Q Consensus 168 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~-~g~~~~A~~~~~~al~ 228 (425)
.+.....--.+..-.+.|...|+.|..+. |.+| ....+.+..|+. +++.++|..+.++++.
T Consensus 137 YlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 137 YLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 323
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=24.84 E-value=1.7e+02 Score=20.01 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD 162 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~ 162 (425)
.+..|..+++.++|.+|..+|+++.
T Consensus 56 ~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 56 LIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3455666666777777777776665
No 324
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=24.82 E-value=1.1e+02 Score=20.51 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=4.4
Q ss_pred CCHHHHHHHHH
Q psy1863 180 GEVEQAEKMAE 190 (425)
Q Consensus 180 g~~~~A~~~~~ 190 (425)
|++++|+.+|.
T Consensus 27 g~y~eAl~~Y~ 37 (85)
T 2v6x_A 27 TQYEEAYTAYY 37 (85)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444333
No 325
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=24.80 E-value=1.6e+02 Score=28.96 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy1863 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARED 215 (425)
Q Consensus 167 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (425)
......|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4455677888899999999999999999999999999988888877663
No 326
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=24.52 E-value=3e+02 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHH
Q psy1863 357 LEINKAVTFL-RMNDVSQAVDVLKSCD 382 (425)
Q Consensus 357 ~~~~la~~~~-~~g~~~~A~~~~~~~~ 382 (425)
+.++.+..|+ -+|+.++|+..-+++.
T Consensus 174 LaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 174 LALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444 4799999999888773
No 327
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=23.87 E-value=2.8e+02 Score=22.15 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc----------cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy1863 138 EINKAVTFLRMNDVSQAVDVLKSCD----------EM-TSSAATNLSFIYFLQGEVEQAEKMAEEACT 194 (425)
Q Consensus 138 ~~~~a~~~~~~g~~~~A~~~~~~~~----------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 194 (425)
.+..++..++.|+...|.+.++-+- |. ........+..+...|+|.+|-..+..+..
T Consensus 111 AI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 111 AIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4677999999999999999998874 32 345566788889999999999888888764
No 328
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.31 E-value=1.2e+02 Score=20.84 Aligned_cols=10 Identities=20% Similarity=-0.034 Sum_probs=3.9
Q ss_pred CCHHHHHHHH
Q psy1863 180 GEVEQAEKMA 189 (425)
Q Consensus 180 g~~~~A~~~~ 189 (425)
|+|++|+.+|
T Consensus 29 g~y~eAl~~Y 38 (93)
T 1wfd_A 29 SRYQQALVCY 38 (93)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3333333333
No 329
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.41 E-value=1.8e+02 Score=19.50 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=7.8
Q ss_pred HhcCHHHHHHHHHHHH
Q psy1863 212 AREDYVKGKELYVHAL 227 (425)
Q Consensus 212 ~~g~~~~A~~~~~~al 227 (425)
..|++++|+.+|.+++
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555444444
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.87 E-value=3.3e+02 Score=22.30 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=22.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy1863 208 NCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245 (425)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 245 (425)
.++++.|.|++|.+.+++....+|++......|..+-.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 34566677777777777776665555545544444443
No 331
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.59 E-value=2.7e+02 Score=21.24 Aligned_cols=45 Identities=2% Similarity=-0.057 Sum_probs=21.5
Q ss_pred HHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy1863 219 GKELYVHALDN--DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263 (425)
Q Consensus 219 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 263 (425)
+..+|..+... ....+..|...|..+...|++.+|...|+..++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34444444332 2233444555555555555555555555555544
No 332
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.27 E-value=1.3e+02 Score=21.80 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=7.1
Q ss_pred hcCHHHHHHHHHHHH
Q psy1863 213 REDYVKGKELYVHAL 227 (425)
Q Consensus 213 ~g~~~~A~~~~~~al 227 (425)
.|+|++|+.+|..++
T Consensus 31 ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 31 AGNYEEALQLYQHAV 45 (117)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 344555544444444
No 333
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=21.04 E-value=20 Score=33.33 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHhccccHHHHHHHHHHhhHHH
Q psy1863 11 MEQEIIGLIDESCICARNQDFKAALEKAKLASNKE 45 (425)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a~~~~ 45 (425)
+.++..+++.+|+.+-..|+|++|+.+|++|+..-
T Consensus 7 ~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l 41 (444)
T 2zan_A 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 41 (444)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999998755
No 334
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.07 E-value=4e+02 Score=22.50 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCchhhHhhchHHHHHHHhHHhhchhhhcHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q psy1863 313 HEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFL-RMNDVSQAVDVLKSCD 382 (425)
Q Consensus 313 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~ 382 (425)
+.|...|+.|.++. ....+.+.. .-.+.++.+..|+ -+|+.++|+.+-+++-
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPi-----------------rLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPI-----------------RLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHH-----------------HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcH-----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777665 333222211 1123344455444 4799999999888874
Done!