Your job contains 1 sequence.
>psy1863
MERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADS
HNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNW
CVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQG
EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL
GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR
NDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEIN
KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSEVPIYLENLLT
VLQYT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1863
(425 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-574 - symbol:ift88 "intraflagellar t... 549 1.6e-52 1
UNIPROTKB|E1BLX1 - symbol:IFT88 "Uncharacterized protein"... 544 4.3e-52 1
RGD|1309717 - symbol:Ift88 "intraflagellar transport 88 h... 539 1.4e-51 1
MGI|MGI:98715 - symbol:Ift88 "intraflagellar transport 88... 539 1.6e-51 1
UNIPROTKB|E1C168 - symbol:IFT88 "Uncharacterized protein"... 535 4.0e-51 1
UNIPROTKB|Q13099 - symbol:IFT88 "Intraflagellar transport... 521 1.7e-49 1
UNIPROTKB|Q9FPW0 - symbol:IFT88 "Intraflagellar transport... 373 8.1e-42 2
WB|WBGene00003885 - symbol:osm-5 species:6239 "Caenorhabd... 391 2.4e-35 1
FB|FBgn0016919 - symbol:nompB "no mechanoreceptor potenti... 293 2.4e-23 1
UNIPROTKB|F1RVB0 - symbol:LOC100519382 "Uncharacterized p... 179 4.9e-11 1
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 133 2.9e-05 2
UNIPROTKB|G4NAC6 - symbol:MGG_03196 "RCM-1" species:24250... 132 4.2e-05 1
MGI|MGI:3039590 - symbol:Tmtc1 "transmembrane and tetratr... 132 4.3e-05 1
TAIR|locus:2080722 - symbol:SPY "SPINDLY" species:3702 "A... 131 5.3e-05 1
TAIR|locus:2103025 - symbol:SEC "secret agent" species:37... 123 0.00043 1
RGD|1564868 - symbol:Tmtc1 "transmembrane and tetratricop... 121 0.00064 1
UNIPROTKB|E1BG63 - symbol:TMTC3 "Uncharacterized protein"... 120 0.00084 1
>ZFIN|ZDB-GENE-030131-574 [details] [associations]
symbol:ift88 "intraflagellar transport 88 homolog"
species:7955 "Danio rerio" [GO:0042462 "eye photoreceptor cell
development" evidence=IMP] [GO:0045494 "photoreceptor cell
maintenance" evidence=IMP] [GO:0035058 "nonmotile primary cilium
assembly" evidence=IMP] [GO:0005932 "microtubule basal body"
evidence=IDA] [GO:0005930 "axoneme" evidence=IDA] [GO:0042384
"cilium assembly" evidence=IMP] [GO:0001539 "ciliary or flagellar
motility" evidence=IMP] [GO:0060271 "cilium morphogenesis"
evidence=IMP] [GO:0072019 "proximal convoluted tubule development"
evidence=IMP] [GO:0045880 "positive regulation of smoothened
signaling pathway" evidence=IMP] [GO:0071482 "cellular response to
light stimulus" evidence=IMP] [GO:0060785 "regulation of apoptosis
involved in tissue homeostasis" evidence=IMP] [GO:0007368
"determination of left/right symmetry" evidence=IGI;IMP]
[GO:0007369 "gastrulation" evidence=IMP] [GO:0005929 "cilium"
evidence=IDA] [GO:0005622 "intracellular" evidence=IMP] [GO:0042073
"intraflagellar transport" evidence=IMP] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF13174 Pfam:PF13181
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
ZFIN:ZDB-GENE-030131-574 GO:GO:0005929 GO:GO:0045494
Gene3D:1.25.40.10 InterPro:IPR006597 SMART:SM00671 GO:GO:0007368
GO:GO:0005932 InterPro:IPR013105 Pfam:PF07719 GO:GO:0007369
GO:GO:0042073 GO:GO:0035058 GO:GO:0001539 GO:GO:0042462
GO:GO:0045880 GO:GO:0071482 GO:GO:0005930 GO:GO:0060785
GeneTree:ENSGT00390000015473 EMBL:CR392366 IPI:IPI00890468
ProteinModelPortal:F1QVN7 Ensembl:ENSDART00000110943
ArrayExpress:F1QVN7 Bgee:F1QVN7 GO:GO:0072019 Uniprot:F1QVN7
Length = 855
Score = 549 (198.3 bits), Expect = 1.6e-52, P = 1.6e-52
Identities = 108/214 (50%), Positives = 150/214 (70%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+TSAKLIAP+IE +F+ G++WCV ++ S + LA DL
Sbjct: 359 AIKNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGSQYVELANDL 418
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKA+T+LR D QAV+ LK ++ + S+AATNLSF+YFL+ + +QA++ AE A
Sbjct: 419 EINKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKDFDQADRYAELAM 478
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+AD YN AA +N GN +EDY K E Y +L ND++C EALYNLGL +K L ++
Sbjct: 479 SADRYNPAALINKGNTLFVKEDYEKAAEFYKESLRNDSSCTEALYNLGLTYKRLGRLEEA 538
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
L+CF KL AI+ + +V+YQ+A+LYE+ D QA
Sbjct: 539 LDCFLKLHAILRNSAQVMYQLANLYEMLEDPHQA 572
Score = 301 (111.0 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 60/114 (52%), Positives = 84/114 (73%)
Query: 289 DVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNS 348
D + N+++EA++ND L Q+ RE K AEK I+TSAKLIAP+IE +F+ G++WCV ++ S
Sbjct: 350 DPHANMVIEAIKNDKLHQMERERKALAEKYIMTSAKLIAPAIEMSFAAGFDWCVDMVKGS 409
Query: 349 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFL 398
+ LA DLEINKA+T+LR D QAV+ LK ++ + S+AATNLSF+YFL
Sbjct: 410 QYVELANDLEINKAITYLRQRDFKQAVETLKMFEKKDSRVKSAAATNLSFLYFL 463
Score = 181 (68.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 55/197 (27%), Positives = 98/197 (49%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
+ PEEK + +E+++ LI++SC+ D + +LEKAK A KER L++ +EQ G AD
Sbjct: 132 DTPEEKIKILEKKVNDLIEDSCLAHARGDLQVSLEKAKEAGRKERALVRQREQTGTADHI 191
Query: 62 NIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSA---KLIAPSI---EDNFS 115
N++LT+S + N A ND ++ + + + +A K+ +I + N++
Sbjct: 192 NLDLTYSVLFNLANQYA-NNDMYTEALNTYQVIVKNKMFNNAGRLKVNMANIYFKQKNYT 250
Query: 116 NG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT-- 170
Y + I N AH+++ + N V F+ M S A+ + + + T
Sbjct: 251 KAIKFYRMALDQISN-AHNAMRIKIMQNIGVVFIHMGQYSDAITSFEYIMTESPNIKTGF 309
Query: 171 NLSFIYFLQGEVEQAEK 187
NL Y+ G+ E+ +K
Sbjct: 310 NLILCYYAIGDRERMKK 326
Score = 105 (42.0 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 44/200 (22%), Positives = 82/200 (41%)
Query: 104 KLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEIN-KAVTFLRMNDVSQAVDVLKSCD 162
K++ + D + C+ R SL + E K +R + + D +
Sbjct: 139 KILEKKVNDLIEDS---CLAHARGDLQVSLEKAKEAGRKERALVRQREQTGTADHINL-- 193
Query: 163 EMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF--VNLGNCAMAREDYVKGK 220
++T S NL+ Y +A + +N+A VN+ N +++Y K
Sbjct: 194 DLTYSVLFNLANQYANNDMYTEALNTYQVIVKNKMFNNAGRLKVNMANIYFKQKNYTKAI 253
Query: 221 ELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275
+ Y ALD ++A I+ + N+G+ H+ +YSD++ F + P++ I
Sbjct: 254 KFYRMALDQISNAHNAMRIKIMQNIGVVFIHMGQYSDAITSFEYIMTESPNIKTGFNLIL 313
Query: 276 SLYEITGDVEQASDVNENLL 295
Y I GD E+ + L+
Sbjct: 314 CYYAI-GDRERMKKAFQKLI 332
>UNIPROTKB|E1BLX1 [details] [associations]
symbol:IFT88 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060426 "lung vasculature development" evidence=IEA]
[GO:0060411 "cardiac septum morphogenesis" evidence=IEA]
[GO:0060271 "cilium morphogenesis" evidence=IEA] [GO:0048853
"forebrain morphogenesis" evidence=IEA] [GO:0048568 "embryonic
organ development" evidence=IEA] [GO:0045862 "positive regulation
of proteolysis" evidence=IEA] [GO:0045177 "apical part of cell"
evidence=IEA] [GO:0042733 "embryonic digit morphogenesis"
evidence=IEA] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0035085 "cilium axoneme"
evidence=IEA] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA] [GO:0031512 "motile primary cilium" evidence=IEA]
[GO:0021537 "telencephalon development" evidence=IEA] [GO:0016485
"protein processing" evidence=IEA] [GO:0009953 "dorsal/ventral
pattern formation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0007368 "determination of
left/right symmetry" evidence=IEA] [GO:0007224 "smoothened
signaling pathway" evidence=IEA] [GO:0005932 "microtubule basal
body" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0003382 "epithelial cell morphogenesis" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13174 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
GO:GO:0005814 GO:GO:0009952 GO:GO:0001701 GO:GO:0045177
GO:GO:0003382 Gene3D:1.25.40.10 GO:GO:0007368 GO:GO:0005932
GO:GO:0009953 GO:GO:0045862 GO:GO:0042733 GO:GO:0016485
GO:GO:0007224 GO:GO:0032391 GO:GO:0060271 GO:GO:0035085
GO:GO:0042487 GO:GO:0021537 GO:GO:0048568 GO:GO:0060411
GO:GO:0031512 GO:GO:0060426 GO:GO:0048853 OMA:CYRRSGN
GeneTree:ENSGT00390000015473 EMBL:DAAA02033236 EMBL:DAAA02033237
IPI:IPI00696143 UniGene:Bt.36147 ProteinModelPortal:E1BLX1
Ensembl:ENSBTAT00000018980 Uniprot:E1BLX1
Length = 825
Score = 544 (196.6 bits), Expect = 4.3e-52, P = 4.3e-52
Identities = 135/342 (39%), Positives = 194/342 (56%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+T+AKLIAP IE +F+ GY+WCV+ ++ S + LA DL
Sbjct: 359 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIETSFAVGYDWCVEVVKASQYVELANDL 418
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKA+T+LR D +QAV+ LK ++ + S+AATNLSF+Y+L+ E QA A+ A
Sbjct: 419 EINKAITYLRQKDFNQAVETLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 478
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+D YN +A N GN A DY K E Y AL ND +C EALYN+GL +K LN ++
Sbjct: 479 NSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDCSCTEALYNIGLTYKKLNRLDEA 538
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
L+CF KL AI+ + +VLYQIA++YE+ D QA + L+ V D ALS+L
Sbjct: 539 LDCFLKLHAILRNSAQVLYQIANVYELMEDPSQAMEWLMQLI-SVVPTDSRALSKLGGLY 597
Query: 312 KHEAEKC-----ILTSAKLIAPSIED-NFSNGY----NWCVQSIRNSAHSSLAQDLEIN- 360
E +K S + +IE + Y +C ++I+ +SL Q ++
Sbjct: 598 DSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKW 657
Query: 361 ---KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
A F R + +A+D K ++ N+ + FLV
Sbjct: 658 QLMVASCFRRSGNYQKALDTYK---DIHRKFPENVECLRFLV 696
Score = 308 (113.5 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 77/203 (37%), Positives = 119/203 (58%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
N+G + Y + H + A ++A +NL L++ + + + F KL A+
Sbjct: 277 NIGVTFIKTGQYSDAISSFEHIMSM-APNLKAGFNLILSYFAIGDREKMKKSFQKLIAVP 335
Query: 265 PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAK 324
+ E Y + + D + NL++EA++ND L Q+ RE K AEK I+T+AK
Sbjct: 336 LEIDE-----DDKY-----ISPSDDPHTNLVIEAIKNDHLRQMERERKAMAEKYIMTAAK 385
Query: 325 LIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE- 383
LIAP IE +F+ GY+WCV+ ++ S + LA DLEINKA+T+LR D +QAV+ LK ++
Sbjct: 386 LIAPVIETSFAVGYDWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVETLKMFEKK 445
Query: 384 ---MTSSAATNLSFIYFLVSSEF 403
+ S+AATNLSF+Y+L +EF
Sbjct: 446 DSRVKSAAATNLSFLYYL-ENEF 467
Score = 185 (70.2 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 57/198 (28%), Positives = 97/198 (48%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
+ PEEK ++E+++ L++ESCI D K ALEKAK A KERVL++ +EQ ++
Sbjct: 132 DSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTRPENI 191
Query: 62 NIELTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNF 114
N++LT+S N+ + +A + +AL+ + +M A + + + + N+
Sbjct: 192 NLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLK--QRNY 249
Query: 115 SNG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS--AA 169
S Y + I S H + + N VTF++ S A+ + M + A
Sbjct: 250 SKAIKFYRMALDQIP-SVHKEMRIKIMQNIGVTFIKTGQYSDAISSFEHIMSMAPNLKAG 308
Query: 170 TNLSFIYFLQGEVEQAEK 187
NL YF G+ E+ +K
Sbjct: 309 FNLILSYFAIGDREKMKK 326
>RGD|1309717 [details] [associations]
symbol:Ift88 "intraflagellar transport 88 homolog
(Chlamydomonas)" species:10116 "Rattus norvegicus" [GO:0001654 "eye
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003382 "epithelial cell
morphogenesis" evidence=IEA;ISO] [GO:0005814 "centriole"
evidence=IEA;ISO] [GO:0005929 "cilium" evidence=ISO] [GO:0005930
"axoneme" evidence=ISO] [GO:0005932 "microtubule basal body"
evidence=IEA;ISO] [GO:0007224 "smoothened signaling pathway"
evidence=IEA;ISO] [GO:0007368 "determination of left/right
symmetry" evidence=IEA;ISO] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008104 "protein localization" evidence=ISO] [GO:0009887 "organ
morphogenesis" evidence=ISO] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA;ISO] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA;ISO] [GO:0016485
"protein processing" evidence=IEA;ISO] [GO:0021513 "spinal cord
dorsal/ventral patterning" evidence=ISO] [GO:0021537 "telencephalon
development" evidence=IEA;ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0031512 "motile primary cilium" evidence=IEA;ISO]
[GO:0032391 "photoreceptor connecting cilium" evidence=IEA;ISO]
[GO:0035085 "cilium axoneme" evidence=IEA;ISO] [GO:0042487
"regulation of odontogenesis of dentin-containing tooth"
evidence=IEA;ISO] [GO:0042733 "embryonic digit morphogenesis"
evidence=IEA;ISO] [GO:0045177 "apical part of cell"
evidence=IEA;ISO] [GO:0045862 "positive regulation of proteolysis"
evidence=IEA;ISO] [GO:0048568 "embryonic organ development"
evidence=IEA;ISO] [GO:0048598 "embryonic morphogenesis"
evidence=ISO] [GO:0048853 "forebrain morphogenesis"
evidence=IEA;ISO] [GO:0060021 "palate development" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060271 "cilium
morphogenesis" evidence=IEA;ISO] [GO:0060411 "cardiac septum
morphogenesis" evidence=IEA;ISO] [GO:0060426 "lung vasculature
development" evidence=IEA;ISO] InterPro:IPR001440
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF00515 Pfam:PF13174 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 RGD:1309717 GO:GO:0019861 GO:GO:0005814 GO:GO:0009952
GO:GO:0001701 GO:GO:0045177 GO:GO:0003382 Gene3D:1.25.40.10
GO:GO:0007368 GO:GO:0005932 GO:GO:0009953 GO:GO:0045862
GO:GO:0042733 GO:GO:0016485 GO:GO:0007224 GO:GO:0032391
GO:GO:0060271 GO:GO:0035085 GO:GO:0042487 GO:GO:0021537
GO:GO:0048568 GO:GO:0060411 GO:GO:0031512 EMBL:CH474049
GO:GO:0060426 GO:GO:0048853 CTD:8100 KO:K16474 OrthoDB:EOG45DWNT
GeneTree:ENSGT00390000015473 IPI:IPI00372651 RefSeq:NP_001100736.1
UniGene:Rn.132110 Ensembl:ENSRNOT00000012988 GeneID:305918
KEGG:rno:305918 UCSC:RGD:1309717 NextBio:655246 Uniprot:D4ACI9
Length = 815
Score = 539 (194.8 bits), Expect = 1.4e-51, P = 1.4e-51
Identities = 136/342 (39%), Positives = 194/342 (56%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S + LA DL
Sbjct: 359 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDL 418
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKA+T+LR D +QAVD LK ++ + S+AATNLSF+Y+L+ E QA A+ A
Sbjct: 419 EINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 478
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
++D YN +A N GN A DY K E Y AL ND++C EALYN+GL +K LN ++
Sbjct: 479 SSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEA 538
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
L+ F KL AI+ + +VL QIA++YE+ D QA + L+ V D ALS+L
Sbjct: 539 LDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLI-SVVPTDSQALSKLGELY 597
Query: 312 KHEAEKC-----ILTSAKLIAPSIED-NFSNGY----NWCVQSIRNSAHSSLAQDLEIN- 360
E +K S + +IE + Y +C ++I+ +SL Q ++
Sbjct: 598 DSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKW 657
Query: 361 ---KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
A F R + +A+D K E+ N+ + FLV
Sbjct: 658 QLMVASCFRRSGNYQKALDTYK---EIHRKFPENVECLRFLV 696
Score = 317 (116.6 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 70/137 (51%), Positives = 95/137 (69%)
Query: 274 IASLYEITGD---VEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSI 330
IA EI D + + D + NLL+EA++ND L Q+ RE K AEK I+T+AKLIAP I
Sbjct: 332 IAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVI 391
Query: 331 EDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE----MTS 386
E +F+ GYNWCV+ ++ S + LA DLEINKA+T+LR D +QAVD LK ++ + S
Sbjct: 392 EASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKS 451
Query: 387 SAATNLSFIYFLVSSEF 403
+AATNLSF+Y+L +EF
Sbjct: 452 AAATNLSFLYYL-ENEF 467
Score = 178 (67.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 56/198 (28%), Positives = 97/198 (48%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
+ PEEK ++E+++ L++ESCI D K ALEKAK A KERVL++ +EQ ++
Sbjct: 132 DSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENI 191
Query: 62 NIELTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNF 114
N++LT+S N+ + +A + +AL+ + +M A + + + + N+
Sbjct: 192 NLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLK--QRNY 249
Query: 115 SNG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS--AA 169
S Y + I S H + + N +TF++ S A++ + M S A
Sbjct: 250 SKAIKFYRMALDQIP-SVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAG 308
Query: 170 TNLSFIYFLQGEVEQAEK 187
NL F G+ E+ +K
Sbjct: 309 FNLILSCFAIGDREKMKK 326
>MGI|MGI:98715 [details] [associations]
symbol:Ift88 "intraflagellar transport 88" species:10090 "Mus
musculus" [GO:0001654 "eye development" evidence=IGI] [GO:0001701
"in utero embryonic development" evidence=IMP] [GO:0003382
"epithelial cell morphogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005814 "centriole" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0005929 "cilium" evidence=IDA] [GO:0005930
"axoneme" evidence=IDA] [GO:0005932 "microtubule basal body"
evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IGI;IMP] [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007420 "brain development" evidence=IGI;IMP]
[GO:0007507 "heart development" evidence=IGI] [GO:0008104 "protein
localization" evidence=IMP] [GO:0009887 "organ morphogenesis"
evidence=IMP] [GO:0009952 "anterior/posterior pattern
specification" evidence=IMP] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IMP] [GO:0016485 "protein processing"
evidence=IMP] [GO:0021513 "spinal cord dorsal/ventral patterning"
evidence=IMP] [GO:0021537 "telencephalon development" evidence=IMP]
[GO:0030030 "cell projection organization" evidence=IEA]
[GO:0030324 "lung development" evidence=IMP] [GO:0031512 "motile
primary cilium" evidence=IDA] [GO:0032391 "photoreceptor connecting
cilium" evidence=IDA] [GO:0035085 "cilium axoneme" evidence=IDA]
[GO:0042487 "regulation of odontogenesis of dentin-containing
tooth" evidence=IMP] [GO:0042733 "embryonic digit morphogenesis"
evidence=IGI;IMP] [GO:0042995 "cell projection" evidence=IEA]
[GO:0045177 "apical part of cell" evidence=IDA] [GO:0045862
"positive regulation of proteolysis" evidence=IMP] [GO:0048568
"embryonic organ development" evidence=IMP] [GO:0048598 "embryonic
morphogenesis" evidence=IGI] [GO:0048853 "forebrain morphogenesis"
evidence=IMP] [GO:0060021 "palate development" evidence=IGI]
[GO:0060173 "limb development" evidence=IGI] [GO:0060271 "cilium
morphogenesis" evidence=IMP] [GO:0060411 "cardiac septum
morphogenesis" evidence=IMP] [GO:0060426 "lung vasculature
development" evidence=IMP] InterPro:IPR001440 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF00515 Pfam:PF13174
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028 MGI:MGI:98715
GO:GO:0008104 GO:GO:0005814 GO:GO:0009952 GO:GO:0001701
GO:GO:0045177 GO:GO:0003382 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0007368 GO:GO:0005932 GO:GO:0009953 GO:GO:0045862
Pathway_Interaction_DB:hedgehog_glipathway GO:GO:0060021
GO:GO:0042733 GO:GO:0016485 GO:GO:0007224 GO:GO:0032391
GO:GO:0060271 GO:GO:0035085 GO:GO:0001654 GO:GO:0042487
GO:GO:0021537 GO:GO:0048568 GO:GO:0060411 GO:GO:0031512
GO:GO:0060426 GO:GO:0048853 CTD:8100 HOGENOM:HOG000258203
HOVERGEN:HBG059328 KO:K16474 OMA:CYRRSGN OrthoDB:EOG45DWNT
EMBL:L31959 EMBL:AK135110 EMBL:AC124462 EMBL:AC154675 EMBL:BC012250
IPI:IPI00988448 PIR:I49564 RefSeq:NP_033402.2 UniGene:Mm.4653
ProteinModelPortal:Q61371 SMR:Q61371 STRING:Q61371
PhosphoSite:Q61371 PaxDb:Q61371 PRIDE:Q61371 GeneID:21821
KEGG:mmu:21821 InParanoid:Q3UXY9 ChiTaRS:IFT88 NextBio:301236
Bgee:Q61371 Genevestigator:Q61371 GermOnline:ENSMUSG00000040040
Uniprot:Q61371
Length = 824
Score = 539 (194.8 bits), Expect = 1.6e-51, P = 1.6e-51
Identities = 136/342 (39%), Positives = 193/342 (56%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+T+AKLIAP IE +F+ GYNWCV+ ++ S + LA DL
Sbjct: 358 AIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDL 417
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKA+T+LR D +QAVD LK ++ + S+AATNLSF+Y+L+ E QA A+ A
Sbjct: 418 EINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAV 477
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+D YN +A N GN A DY K E Y AL ND++C EALYN+GL +K LN ++
Sbjct: 478 NSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEA 537
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
L+ F KL AI+ + +VL QIA++YE+ D QA + L+ V D ALS+L
Sbjct: 538 LDSFLKLHAILRNSAQVLCQIANIYELMEDPNQAIEWLMQLI-SVVPTDSQALSKLGELY 596
Query: 312 KHEAEKC-----ILTSAKLIAPSIED-NFSNGY----NWCVQSIRNSAHSSLAQDLEIN- 360
E +K S + +IE + Y +C ++I+ +SL Q ++
Sbjct: 597 DSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKW 656
Query: 361 ---KAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLV 399
A F R + +A+D K E+ N+ + FLV
Sbjct: 657 QLMVASCFRRSGNYQKALDTYK---EIHRKFPENVECLRFLV 695
Score = 317 (116.6 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 70/137 (51%), Positives = 95/137 (69%)
Query: 274 IASLYEITGD---VEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSI 330
IA EI D + + D + NLL+EA++ND L Q+ RE K AEK I+T+AKLIAP I
Sbjct: 331 IAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVI 390
Query: 331 EDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE----MTS 386
E +F+ GYNWCV+ ++ S + LA DLEINKA+T+LR D +QAVD LK ++ + S
Sbjct: 391 EASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKS 450
Query: 387 SAATNLSFIYFLVSSEF 403
+AATNLSF+Y+L +EF
Sbjct: 451 AAATNLSFLYYL-ENEF 466
Score = 178 (67.7 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 56/198 (28%), Positives = 97/198 (48%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
+ PEEK ++E+++ L++ESCI D K ALEKAK A KERVL++ +EQ ++
Sbjct: 131 DSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENI 190
Query: 62 NIELTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNF 114
N++LT+S N+ + +A + +AL+ + +M A + + + + N+
Sbjct: 191 NLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLK--QRNY 248
Query: 115 SNG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS--AA 169
S Y + I S H + + N +TF++ S A++ + M S A
Sbjct: 249 SKAIKFYRMALDQIP-SVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAG 307
Query: 170 TNLSFIYFLQGEVEQAEK 187
NL F G+ E+ +K
Sbjct: 308 FNLILSCFAIGDREKMKK 325
>UNIPROTKB|E1C168 [details] [associations]
symbol:IFT88 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003382 "epithelial cell morphogenesis" evidence=IEA]
[GO:0005814 "centriole" evidence=IEA] [GO:0005932 "microtubule
basal body" evidence=IEA] [GO:0007224 "smoothened signaling
pathway" evidence=IEA] [GO:0007368 "determination of left/right
symmetry" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0016485 "protein processing"
evidence=IEA] [GO:0021537 "telencephalon development" evidence=IEA]
[GO:0031512 "motile primary cilium" evidence=IEA] [GO:0032391
"photoreceptor connecting cilium" evidence=IEA] [GO:0035085 "cilium
axoneme" evidence=IEA] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0042733 "embryonic digit
morphogenesis" evidence=IEA] [GO:0045177 "apical part of cell"
evidence=IEA] [GO:0045862 "positive regulation of proteolysis"
evidence=IEA] [GO:0048568 "embryonic organ development"
evidence=IEA] [GO:0048853 "forebrain morphogenesis" evidence=IEA]
[GO:0060271 "cilium morphogenesis" evidence=IEA] [GO:0060411
"cardiac septum morphogenesis" evidence=IEA] [GO:0060426 "lung
vasculature development" evidence=IEA] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF13174 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00028 GO:GO:0005814 GO:GO:0045177
Gene3D:1.25.40.10 InterPro:IPR006597 Pfam:PF08238 GO:GO:0005932
InterPro:IPR013105 Pfam:PF07719 GO:GO:0045862 GO:GO:0016485
GO:GO:0007224 GO:GO:0032391 GO:GO:0035085 GO:GO:0042487
GO:GO:0031512 OMA:CYRRSGN GeneTree:ENSGT00390000015473
EMBL:AADN02005095 EMBL:AADN02005096 IPI:IPI00589996
UniGene:Gga.50321 Ensembl:ENSGALT00000027679 Uniprot:E1C168
Length = 816
Score = 535 (193.4 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 114/246 (46%), Positives = 160/246 (65%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND+L Q+ RE K AE I+T+AKLIAP IE +F+ GY+WCV++++ S + LA DL
Sbjct: 358 AIKNDSLRQIERERKSMAEDYIMTAAKLIAPVIETSFAVGYDWCVEAVKASHYVELANDL 417
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKA T+LR D +QA++ LK ++ + S+AATNLSF+Y+L+ E+ QA A+ A
Sbjct: 418 EINKATTYLRQRDFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQATNYADLAV 477
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
++D YN AA N GN A DY K E Y AL ND +C EALYNLGL +K LN ++
Sbjct: 478 SSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDCSCTEALYNLGLTYKKLNRIDEA 537
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND--ALSQLHREM 311
L+CF KL AI+ + +VL+QIA +YEI D QA + L+ V D L++L +
Sbjct: 538 LDCFLKLHAILGNSAQVLHQIADIYEIMEDPNQAIEWLMQLI-SVVPTDPHVLTKLGKLY 596
Query: 312 KHEAEK 317
+E +K
Sbjct: 597 DNEGDK 602
Score = 305 (112.4 bits), Expect = 4.7e-25, P = 4.7e-25
Identities = 76/198 (38%), Positives = 116/198 (58%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
N+G + Y+ + H + ++A +NL + + + + + F KL A V
Sbjct: 276 NIGVAFIKTGQYMDAISSFEHIMSTSPN-LKAGFNLIVCYFAIGDSEQMKKAFQKLIA-V 333
Query: 265 PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAK 324
P EV + Y D D + NLL+EA++ND+L Q+ RE K AE I+T+AK
Sbjct: 334 PL--EVDFD--DKYVSPND-----DPHTNLLIEAIKNDSLRQIERERKSMAEDYIMTAAK 384
Query: 325 LIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE- 383
LIAP IE +F+ GY+WCV++++ S + LA DLEINKA T+LR D +QA++ LK ++
Sbjct: 385 LIAPVIETSFAVGYDWCVEAVKASHYVELANDLEINKATTYLRQRDFNQALETLKMFEKK 444
Query: 384 ---MTSSAATNLSFIYFL 398
+ S+AATNLSF+Y+L
Sbjct: 445 DSRVKSAAATNLSFLYYL 462
Score = 176 (67.0 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 100/417 (23%), Positives = 172/417 (41%)
Query: 5 EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIE 64
EEK ++E+++ L++ESCI D K ALEKAK A KERVL++ +EQ +DS N++
Sbjct: 134 EEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKEAGRKERVLVRQREQTATSDSINLD 193
Query: 65 LTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNFSNG 117
LT+S N+ + A + +AL+ + +M + + + + + N+S
Sbjct: 194 LTYSVLFNLASQYAANEMYAEALNTYQVIVKNKMFNNGGRLKVNMGNIYLK--QRNYSKA 251
Query: 118 ---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS-----AA 169
Y + I S H + + N V F++ Q +D + S + + S+ A
Sbjct: 252 IKFYRMALDQIP-SVHKEMRIKIMQNIGVAFIK---TGQYMDAISSFEHIMSTSPNLKAG 307
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
NL YF G+ EQ +K ++ V+ + ++ D L + A+ N
Sbjct: 308 FNLIVCYFAIGDSEQMKKAFQKLIAVPLE-----VDFDDKYVSPNDDPH-TNLLIEAIKN 361
Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQA-IVPSMPEVLYQ-IASLYEITGDVEQA 287
D+ L + K + E D + KL A ++ + V Y + + VE A
Sbjct: 362 DS-----LRQIERERKSMAE--DYIMTAAKLIAPVIETSFAVGYDWCVEAVKASHYVELA 414
Query: 288 SDVNENLLLEAVR----NDALSQLHR-EMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCV 342
+D+ N +R N AL L E K K + +E+ + N+
Sbjct: 415 NDLEINKATTYLRQRDFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQATNYAD 474
Query: 343 QSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIY 396
++ + ++ A NK T D +A + K D + A NL Y
Sbjct: 475 LAVSSDRYNPAALT---NKGNTVFANGDYEKAAEFYKEALRNDCSCTEALYNLGLTY 528
Score = 128 (50.1 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 140 NKAVTFLRMNDVSQAV---DVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + N+++QA D+ S D +A TN F G+ E+A + +EA D
Sbjct: 455 NLSFLYYLENELAQATNYADLAVSSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND 514
Query: 197 TYNSAAFVNLGNC--AMAREDYVKGKELYVHA-LDNDATCIEALYNLGLAHKHLNEYSDS 253
+ A NLG + R D L +HA L N A + L+ + ++ + + + +
Sbjct: 515 CSCTEALYNLGLTYKKLNRIDEALDCFLKLHAILGNSA---QVLHQIADIYEIMEDPNQA 571
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+E +L ++VP+ P VL ++ LY+ GD QA
Sbjct: 572 IEWLMQLISVVPTDPHVLTKLGKLYDNEGDKSQA 605
>UNIPROTKB|Q13099 [details] [associations]
symbol:IFT88 "Intraflagellar transport protein 88 homolog"
species:9606 "Homo sapiens" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003382 "epithelial cell
morphogenesis" evidence=IEA] [GO:0007224 "smoothened signaling
pathway" evidence=IEA] [GO:0007368 "determination of left/right
symmetry" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0016485 "protein processing"
evidence=IEA] [GO:0021537 "telencephalon development" evidence=IEA]
[GO:0031512 "motile primary cilium" evidence=IEA] [GO:0032391
"photoreceptor connecting cilium" evidence=IEA] [GO:0035085 "cilium
axoneme" evidence=IEA] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0042733 "embryonic digit
morphogenesis" evidence=IEA] [GO:0045177 "apical part of cell"
evidence=IEA] [GO:0045862 "positive regulation of proteolysis"
evidence=IEA] [GO:0048568 "embryonic organ development"
evidence=IEA] [GO:0048853 "forebrain morphogenesis" evidence=IEA]
[GO:0060411 "cardiac septum morphogenesis" evidence=IEA]
[GO:0060426 "lung vasculature development" evidence=IEA]
[GO:0005932 "microtubule basal body" evidence=ISS] [GO:0005814
"centriole" evidence=ISS] [GO:0005929 "cilium" evidence=ISS]
[GO:0060271 "cilium morphogenesis" evidence=ISS] [GO:0031514
"motile cilium" evidence=ISS] [GO:0030992 "intraflagellar transport
particle B" evidence=ISS] InterPro:IPR001440 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF00515 Pfam:PF13174
Pfam:PF13181 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
GO:GO:0005814 GO:GO:0009952 EMBL:CH471075 GO:GO:0005929
GO:GO:0001701 GO:GO:0045177 GO:GO:0003382 eggNOG:COG0457
Gene3D:1.25.40.10 InterPro:IPR006597 SMART:SM00671 GO:GO:0009434
GO:GO:0007368 GO:GO:0005932 GO:GO:0009953 InterPro:IPR013105
Pfam:PF07719 GO:GO:0045862 GO:GO:0042733 GO:GO:0016485
GO:GO:0007224 GO:GO:0032391 GO:GO:0060271 GO:GO:0035085
GO:GO:0042487 GO:GO:0021537 GO:GO:0048568 GO:GO:0060411
EMBL:AL590096 GO:GO:0031512 GO:GO:0060426 GO:GO:0048853
GO:GO:0030992 EMBL:U20362 EMBL:AK300769 EMBL:AL161772 EMBL:BC030776
IPI:IPI00402297 IPI:IPI00646878 IPI:IPI00973733 RefSeq:NP_006522.2
RefSeq:NP_783195.2 UniGene:Hs.187376 ProteinModelPortal:Q13099
SMR:Q13099 IntAct:Q13099 STRING:Q13099 PhosphoSite:Q13099
DMDM:206729873 PaxDb:Q13099 PRIDE:Q13099 DNASU:8100
Ensembl:ENST00000319980 Ensembl:ENST00000351808 GeneID:8100
KEGG:hsa:8100 UCSC:uc001unh.3 CTD:8100 GeneCards:GC13P021141
HGNC:HGNC:20606 HPA:HPA040731 MIM:600595 neXtProt:NX_Q13099
PharmGKB:PA134991804 HOGENOM:HOG000258203 HOVERGEN:HBG059328
InParanoid:Q13099 KO:K16474 OMA:CYRRSGN OrthoDB:EOG45DWNT
GenomeRNAi:8100 NextBio:30744 ArrayExpress:Q13099 Bgee:Q13099
CleanEx:HS_IFT88 Genevestigator:Q13099 GermOnline:ENSG00000032742
Uniprot:Q13099
Length = 833
Score = 521 (188.5 bits), Expect = 1.7e-49, P = 1.7e-49
Identities = 106/214 (49%), Positives = 145/214 (67%)
Query: 78 AVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDL 137
A++ND L Q+ RE K AEK I+TSAKLIAP IE +F+ GY+WCV+ ++ S + LA DL
Sbjct: 367 AIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDL 426
Query: 138 EINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEAC 193
EINKAVT+LR D +QAV++LK ++ + S+AATNLS +Y++ + QA A+ A
Sbjct: 427 EINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAV 486
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+D YN AA N GN A DY K E Y AL ND++C EALYN+GL ++ LN ++
Sbjct: 487 NSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 546
Query: 254 LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
L+CF KL AI+ + EVLYQIA++YE+ + QA
Sbjct: 547 LDCFLKLHAILRNSAEVLYQIANIYELMENPSQA 580
Score = 309 (113.8 bits), Expect = 9.9e-26, P = 9.9e-26
Identities = 102/340 (30%), Positives = 170/340 (50%)
Query: 82 DALSQLHREMKHEAEK-CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD--LE 138
+ + QL +E+ E+ CI S + ++E G V +R + ++ L+
Sbjct: 145 EKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVL-VRQREQVTTPENINLD 203
Query: 139 INKAVTF-----LRMNDV-SQAVDVLKSC--DEMTSSAAT---NLSFIYFLQGEVEQAEK 187
+ +V F +N++ ++A++ + ++M S+A N+ IY Q +A K
Sbjct: 204 LTYSVLFNLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIK 263
Query: 188 MAEEACT-ADTYNSAAFV----NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
A + N + N+G + Y Y H + A ++A YNL +
Sbjct: 264 FYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSM-APNLKAGYNLTI 322
Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRND 302
+ + + + F KL + + E Y + + D + NL+ EA++ND
Sbjct: 323 CYFAIGDREKMKKAFQKLITVPLEIDEDKY-----------ISPSDDPHTNLVTEAIKND 371
Query: 303 ALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKA 362
L Q+ RE K AEK I+TSAKLIAP IE +F+ GY+WCV+ ++ S + LA DLEINKA
Sbjct: 372 HLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEINKA 431
Query: 363 VTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFL 398
VT+LR D +QAV++LK ++ + S+AATNLS +Y++
Sbjct: 432 VTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYM 471
Score = 183 (69.5 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 56/206 (27%), Positives = 109/206 (52%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
+ PEEK +++E+E+ L++ESCI D K ALEKAK A KERVL++ +EQ ++
Sbjct: 141 DSPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTTPENI 200
Query: 62 NIELTFS---NINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNF--SN 116
N++LT+S N+ + + + +AL+ +K++ + ++A ++ ++ + +
Sbjct: 201 NLDLTYSVLFNLASQYSVNEMYAEALNTYQVIVKNK----MFSNAGILKMNMGNIYLKQR 256
Query: 117 GYNWCVQSIRNSAHS--SLAQDLEI----NKAVTFLRMNDVSQAVDVLKSCDEMTSS--A 168
Y+ ++ R + S+ + + I N VTF++ S A++ + M + A
Sbjct: 257 NYSKAIKFYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKA 316
Query: 169 ATNLSFIYFLQGEVEQAEKMAEEACT 194
NL+ YF G+ E+ +K ++ T
Sbjct: 317 GYNLTICYFAIGDREKMKKAFQKLIT 342
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 46/178 (25%), Positives = 81/178 (45%)
Query: 118 YNWCVQSIR--NSAHSSLAQDLEINKAVTFLRMNDVSQA---VDVLKSCDEMTSSAATNL 172
YN V+ ++ S + N + + D +QA D+ + D +A TN
Sbjct: 440 YNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNK 499
Query: 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC--AMAREDYVKGKELYVHA-LDN 229
F G+ E+A + +EA D+ + A N+G + R D L +HA L N
Sbjct: 500 GNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
A E LY + ++ + S ++E ++ +++P+ P+VL ++ LY+ GD QA
Sbjct: 560 SA---EVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQA 614
>UNIPROTKB|Q9FPW0 [details] [associations]
symbol:IFT88 "Intraflagellar transport particle protein
IFT88" species:3055 "Chlamydomonas reinhardtii" [GO:0005515
"protein binding" evidence=IPI] [GO:0030992 "intraflagellar
transport particle B" evidence=IDA] [GO:0031514 "motile cilium"
evidence=IDA] InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
Gene3D:1.25.40.10 GO:GO:0009434 GO:GO:0030992 EMBL:AF298884
ProteinModelPortal:Q9FPW0 STRING:Q9FPW0 Uniprot:Q9FPW0
Length = 782
Score = 373 (136.4 bits), Expect = 8.1e-42, Sum P(2) = 8.1e-42
Identities = 86/247 (34%), Positives = 137/247 (55%)
Query: 81 NDALSQLHREMKHEAEKCILTSAKLIAPSIE--DNFSNGYNWCVQSIRNSAHSSLAQDLE 138
+D L R+ + I+ +A+LI+ ++ + F G+ WC + +R++ ++ LA ++E
Sbjct: 348 DDGLKDEMRKRNTIITRLIVKAAQLISEKVDRANGFEGGFMWCCEQLRDAGYTKLANEVE 407
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLQGEVEQAEKMAEEACT 194
+ KA F+ +AV V K ++ + + AATNL+F+YFL+GE +QA+K +E A
Sbjct: 408 LAKATRFMGQKQFDKAVGVFKDFEKKEPRVKARAATNLAFLYFLEGETDQADKYSEMALK 467
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
+D YN+ A+VN G + R D + L+ A D C+EA+YNLGL + LNE +L
Sbjct: 468 SDRYNARAYVNKGCVLVERGDLEGARSLFNEAAGIDPYCVEAIYNLGLVSQRLNELPYAL 527
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA-----LSQLHR 309
F KL +VP EV++QIA+ Y++ GD + A E LL V ND L +H
Sbjct: 528 AAFKKLHNMVPDNVEVIHQIATTYDMMGDFKNAVKWFE-LLTSLVSNDPGVLARLGAIHA 586
Query: 310 EMKHEAE 316
EA+
Sbjct: 587 RFDDEAK 593
Score = 160 (61.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 60/254 (23%), Positives = 110/254 (43%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----CTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
N+ I+F Q + A KM A TA N+G + Y + +
Sbjct: 226 NMGNIHFEQKKYPSAIKMYRMALDQISATAKEVRFKIMRNIGLSFVRMGQYPDALQSFAT 285
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285
+DN + YNL + + L++ F KL + PS E+ D +
Sbjct: 286 VMDN-VPDHQTGYNLVMCNYALSDREGMKNAFIKLLKVSPSS-----------EMDDD-D 332
Query: 286 QASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIE--DNFSNGYNWCVQ 343
+ ++ + +D L R+ + I+ +A+LI+ ++ + F G+ WC +
Sbjct: 333 DDDPMGDDDMQVMTMDDGLKDEMRKRNTIITRLIVKAAQLISEKVDRANGFEGGFMWCCE 392
Query: 344 SIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE----MTSSAATNLSFIYFLV 399
+R++ ++ LA ++E+ KA F+ +AV V K ++ + + AATNL+F+YFL
Sbjct: 393 QLRDAGYTKLANEVELAKATRFMGQKQFDKAVGVFKDFEKKEPRVKARAATNLAFLYFLE 452
Query: 400 SSEFQYLPTSEVPI 413
Q SE+ +
Sbjct: 453 GETDQADKYSEMAL 466
Score = 104 (41.7 bits), Expect = 8.1e-42, Sum P(2) = 8.1e-42
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 4 PEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNI 63
PEE+ ME+ + L+++S A D +ALE A A ER L + +EQ AD N+
Sbjct: 122 PEEQARGMEKTVHELLEKSAADAAKNDINSALENAMEAKKNERKLCRFREQNNMADQINL 181
Query: 64 ELTFS 68
EL ++
Sbjct: 182 ELMYA 186
>WB|WBGene00003885 [details] [associations]
symbol:osm-5 species:6239 "Caenorhabditis elegans"
[GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0035058 "nonmotile
primary cilium assembly" evidence=IMP] [GO:0031513 "nonmotile
primary cilium" evidence=IDA] InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0035058
GO:GO:0031513 KO:K16474 OMA:CYRRSGN EMBL:FO081792 EMBL:AF314195
RefSeq:NP_508511.1 UniGene:Cel.19400 ProteinModelPortal:G5ED37
SMR:G5ED37 EnsemblMetazoa:Y41G9A.1 GeneID:180585
KEGG:cel:CELE_Y41G9A.1 CTD:180585 WormBase:Y41G9A.1
GeneTree:ENSGT00390000015473 NextBio:910000 Uniprot:G5ED37
Length = 820
Score = 391 (142.7 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 93/249 (37%), Positives = 143/249 (57%)
Query: 77 RAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQD 136
+ + +D L + K +AEK I+T+ K+I+P I +++ GY WC++S++ S H+ LA +
Sbjct: 344 QTLNSDMLKNWEKRNKSDAEKAIITAVKIISPVIAPDYAIGYEWCLESLKQSVHAPLAIE 403
Query: 137 LEINKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATN-LSFIYFLQG--EVEQAEKMAE 190
LE+ KA ++ D+ A++VLK S D T+SAA N L + FLQG + A++ A+
Sbjct: 404 LEMTKAGELMKNGDIEGAIEVLKVFNSQDSKTASAAANNLCMLRFLQGGRRLVDAQQYAD 463
Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
+A + D YN+ A VN GN A D K Y AL+NDA+C++AL+N+GL K
Sbjct: 464 QALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNL 523
Query: 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDA--LSQLH 308
+LE F+KL I+ + +VL Q+AS+YE D QA ++ V ND LS+L
Sbjct: 524 EQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQAN-SLVPNDPAILSKLA 582
Query: 309 REMKHEAEK 317
E +K
Sbjct: 583 DLYDQEGDK 591
Score = 210 (79.0 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 76/276 (27%), Positives = 130/276 (47%)
Query: 132 SLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEK---M 188
+LAQ E N +T +N + + V + N+ I+F + E +A K M
Sbjct: 191 NLAQQYEAND-MTNEALN--TYEIIVRNKMFPNSGRLKVNIGNIHFRKREFTKALKYYRM 247
Query: 189 AEEACTADTYNSAAFV--NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246
A + + ++ + N+G + Y + H ++ + I AL NL L
Sbjct: 248 ALDQVPSIQKDTRIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFITAL-NLILVAFC 306
Query: 247 LNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
+ + E F K+ I P P+ D + D ++ LL + + +D L
Sbjct: 307 IQDAEKMREAFVKMIDI-PGFPD------------DDYMKEKDDDDVLLNQTLNSDMLKN 353
Query: 307 LHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFL 366
+ K +AEK I+T+ K+I+P I +++ GY WC++S++ S H+ LA +LE+ KA +
Sbjct: 354 WEKRNKSDAEKAIITAVKIISPVIAPDYAIGYEWCLESLKQSVHAPLAIELEMTKAGELM 413
Query: 367 RMNDVSQAVDVLK---SCDEMTSSAATN-LSFIYFL 398
+ D+ A++VLK S D T+SAA N L + FL
Sbjct: 414 KNGDIEGAIEVLKVFNSQDSKTASAAANNLCMLRFL 449
Score = 173 (66.0 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 56/199 (28%), Positives = 98/199 (49%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
E EEK +ME +++ ++ ES + + + FK AL+KAK A +ER ++K +EQ G +
Sbjct: 121 ENGEEKCRQMENKVMEMLRESMLASEKKKFKEALDKAKEAGRRERAVVKHREQQGLVEMM 180
Query: 62 NIELTFS---NINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNF-SNG 117
N++LTF+ N+ ++ A + N+AL+ +++ K S +L +F
Sbjct: 181 NLDLTFTVLFNLAQQYEANDMTNEALNTYEIIVRN---KMFPNSGRLKVNIGNIHFRKRE 237
Query: 118 YNWCVQSIRNSAHS--SLAQDLEI----NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATN 171
+ ++ R + S+ +D I N VTF+RM A+ C E + T
Sbjct: 238 FTKALKYYRMALDQVPSIQKDTRIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFITA 297
Query: 172 LSFIYFLQGEVEQAEKMAE 190
L+ I + ++ AEKM E
Sbjct: 298 LNLI-LVAFCIQDAEKMRE 315
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 38/144 (26%), Positives = 70/144 (48%)
Query: 147 RMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL 206
R+ D Q D S D + A N I ++ G++++A EA D A N+
Sbjct: 454 RLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNI 513
Query: 207 GNCAMAREDYVKGKELY--VHA-LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
G A A+ + + E + +H L N+ ++ L L ++ L + + ++E + + ++
Sbjct: 514 GLTAKAQGNLEQALEFFYKLHGILLNN---VQVLVQLASIYESLEDSAQAIELYSQANSL 570
Query: 264 VPSMPEVLYQIASLYEITGDVEQA 287
VP+ P +L ++A LY+ GD QA
Sbjct: 571 VPNDPAILSKLADLYDQEGDKSQA 594
Score = 38 (18.4 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 242 LAHKHLN-EYSD-SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290
LA +L ++S+ S+ K + P++ + IAS TG+ ++A ++
Sbjct: 615 LASYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFEL 665
>FB|FBgn0016919 [details] [associations]
symbol:nompB "no mechanoreceptor potential B" species:7227
"Drosophila melanogaster" [GO:0007605 "sensory perception of sound"
evidence=IMP] [GO:0042073 "intraflagellar transport" evidence=NAS]
[GO:0035058 "nonmotile primary cilium assembly" evidence=IMP]
[GO:0009296 "flagellum assembly" evidence=IMP] [GO:0042384 "cilium
assembly" evidence=ISM] InterPro:IPR001440 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF00515 Pfam:PF13181
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028 EMBL:AE014134
GO:GO:0007605 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0035058 KO:K16474 OMA:CYRRSGN GeneTree:ENSGT00390000015473
RefSeq:NP_724347.2 UniGene:Dm.26853 ProteinModelPortal:Q7KRS6
SMR:Q7KRS6 STRING:Q7KRS6 PRIDE:Q7KRS6 EnsemblMetazoa:FBtr0085925
GeneID:35414 KEGG:dme:Dmel_CG12548 UCSC:CG12548-RA CTD:35414
FlyBase:FBgn0016919 InParanoid:Q7KRS6 OrthoDB:EOG463XSW
PhylomeDB:Q7KRS6 GenomeRNAi:35414 NextBio:793399
ArrayExpress:Q7KRS6 Bgee:Q7KRS6 Uniprot:Q7KRS6
Length = 852
Score = 293 (108.2 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 74/222 (33%), Positives = 116/222 (52%)
Query: 68 SNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN 127
+ + + +A++ D L+ E ++ ++ I LI+P IEDN+++GYNWC++ I+
Sbjct: 376 ATVKHRYVVQALKKDELAVYRNERRNAVKRSITMIVDLISPFIEDNYNDGYNWCIEIIKT 435
Query: 128 SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDE-----MTSSAATNLSFIYFLQGEV 182
S + LA +LE+NKA+ +LR NDV QA++ L+ D MT+SA TNLSFIY
Sbjct: 436 SNLAWLANELELNKALVYLRQNDVHQAIETLQMYDRKSEGSMTASALTNLSFIYIKMAS- 494
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
++ E + N+ +N G + + + E + AL EA YNLGL
Sbjct: 495 HCVNQLHEIGSLKN--NAPGLINAGIVELGSHNLILASERFEGALQLQPMNFEARYNLGL 552
Query: 243 AHKHLNEYSDSLECFHKL--QAIVPSMPE---VLYQIASLYE 279
N+Y + E F L Q ++PS + V YQ+A L E
Sbjct: 553 VALAQNDYELAEERFELLKEQLMLPSSVQHSHVFYQLAKLQE 594
Score = 256 (95.2 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 79/272 (29%), Positives = 133/272 (48%)
Query: 141 KAVTFLRMNDVSQAVD-VLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199
KAV RM A+D V KS ++ N+ ++ G A E T + N
Sbjct: 230 KAVKMYRM-----ALDSVPKSLSQLRLKIRENIGILFIRMGSYSDAASSFEFIMT-ERAN 283
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
+ ++L C A D K K + D IE+ L + ++ ++ +
Sbjct: 284 IRSSIHLLLCYFALGDVEKVKLAFRRLCDVQTEAIESDMESETNIIKLQQQAEPIQQIGE 343
Query: 260 L---QAI--VPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHE 314
Q++ P V+ + ++ V+ A+ V +++A++ D L+ E ++
Sbjct: 344 TDGYQSLNNEPVTGSVI-KAEGGGKLNETVKFAATVKHRYVVQALKKDELAVYRNERRNA 402
Query: 315 AEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQA 374
++ I LI+P IEDN+++GYNWC++ I+ S + LA +LE+NKA+ +LR NDV QA
Sbjct: 403 VKRSITMIVDLISPFIEDNYNDGYNWCIEIIKTSNLAWLANELELNKALVYLRQNDVHQA 462
Query: 375 VDVLKSCDE-----MTSSAATNLSFIYFLVSS 401
++ L+ D MT+SA TNLSFIY ++S
Sbjct: 463 IETLQMYDRKSEGSMTASALTNLSFIYIKMAS 494
Score = 133 (51.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 47/207 (22%), Positives = 88/207 (42%)
Query: 4 PEEKFERMEQEIIGLIDESCICA--------RNQDFKAA--LEKAKLASNKERVLIKLQE 53
P+ K++ +E++I+ L++ S + A N D K A L KAK A + +R L + ++
Sbjct: 110 PQMKYKNLEEKIVKLLESSIVLAWQGSPNKLLNLDTKLAEALSKAKEAFSLDRTLHQFRD 169
Query: 54 QFGHADSHNIELTFSNINRKK-NARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIED 112
Q G HN +LT++ R + + A+ ++ ++ H + + + I
Sbjct: 170 QHGENVYHNFDLTYAQYERSEMHIEALNTYSIMAKNKMFPHVNQLKLNMGNIYYSMGIYQ 229
Query: 113 NFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK--SCDEMTSSAAT 170
Y + S+ S S L + N + F+RM S A + + ++
Sbjct: 230 KAVKMYRMALDSVPKSL-SQLRLKIRENIGILFIRMGSYSDAASSFEFIMTERANIRSSI 288
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADT 197
+L YF G+VE+ + C T
Sbjct: 289 HLLLCYFALGDVEKVKLAFRRLCDVQT 315
Score = 45 (20.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 16/85 (18%), Positives = 37/85 (43%)
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS 253
+A +S F +G+ +D+ + + Y A + + I ++G + L +
Sbjct: 621 SASDIDSRLFEKVGSLYEQIQDHQEANQYYNEAYRINMSDIGIASSIGSYYIKLQATERA 680
Query: 254 LECFHKLQAIVPSMPEVLYQIASLY 278
L + + P+ P ++ +IAS +
Sbjct: 681 LFYYERAVLADPNDPNLMLRIASCF 705
Score = 43 (20.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
LGL K + D+L C L + S+ ++ LYE
Sbjct: 716 LGLFQKIHARFPDNLTCIRALMQVTKSL-----ELGDLYE 750
>UNIPROTKB|F1RVB0 [details] [associations]
symbol:LOC100519382 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0060426 "lung vasculature development"
evidence=IEA] [GO:0060411 "cardiac septum morphogenesis"
evidence=IEA] [GO:0060271 "cilium morphogenesis" evidence=IEA]
[GO:0048853 "forebrain morphogenesis" evidence=IEA] [GO:0048568
"embryonic organ development" evidence=IEA] [GO:0045862 "positive
regulation of proteolysis" evidence=IEA] [GO:0045177 "apical part
of cell" evidence=IEA] [GO:0042733 "embryonic digit morphogenesis"
evidence=IEA] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0035085 "cilium axoneme"
evidence=IEA] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA] [GO:0031512 "motile primary cilium" evidence=IEA]
[GO:0021537 "telencephalon development" evidence=IEA] [GO:0016485
"protein processing" evidence=IEA] [GO:0009953 "dorsal/ventral
pattern formation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0007368 "determination of
left/right symmetry" evidence=IEA] [GO:0007224 "smoothened
signaling pathway" evidence=IEA] [GO:0005932 "microtubule basal
body" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0003382 "epithelial cell morphogenesis" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13174 PROSITE:PS50005 PROSITE:PS50293 Gene3D:1.25.40.10
GeneTree:ENSGT00390000015473 EMBL:CU633734
Ensembl:ENSSSCT00000010151 OMA:HIMSTAP Uniprot:F1RVB0
Length = 356
Score = 179 (68.1 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 55/198 (27%), Positives = 97/198 (48%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSH 61
+ PEEK ++E+++ L++ESC+ + D K ALEKAK A KERVL++ +EQ ++
Sbjct: 132 DSPEEKIRQLEKKVNELVEESCVASSCGDLKLALEKAKDAGRKERVLVRQREQVASPENI 191
Query: 62 NIELTFS---NINRKKNARAVRNDALSQ----LHREMKHEAEKCILTSAKLIAPSIEDNF 114
N++LT+S + + +A + +AL+ + +M A + + + + N+
Sbjct: 192 NLDLTYSVLFTLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLK--QRNY 249
Query: 115 SNG---YNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS--AA 169
S Y + I S H + + N VTF++ S AV+ + + A
Sbjct: 250 SKAIKFYRMALDQIP-SVHKEMRIKIMQNIGVTFIKTGQYSDAVNSFEHIMSTAPNLKAG 308
Query: 170 TNLSFIYFLQGEVEQAEK 187
NL YF G+ E+ +K
Sbjct: 309 FNLILSYFALGDREKMKK 326
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 133 (51.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 47/182 (25%), Positives = 81/182 (44%)
Query: 120 WCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMT-------SSAATNL 172
WC ++++ + +S D+ N A+ + ++ K C E T S A TNL
Sbjct: 2119 WCEKALKINPNSV---DVLSNIALLHFMNGNTEES----KICFEKTLKIKPDHSYALTNL 2171
Query: 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
FIY+LQG+ +A +++ D F NLG + + K+ Y AL
Sbjct: 2172 GFIYYLQGDYSKAISFYQQSIEIDPSMHHGFNNLGLIYQHQGLAEQAKQQYEKALQILPN 2231
Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNE 292
+AL NLG + + D++E + K Q + P E + +Y+ G V +A ++ +
Sbjct: 2232 FAQALNNLGSIYYKNGKIEDAIEYYKKAQQVDPQFLEPYKSLGYIYQKIGMVVEAKNMLD 2291
Query: 293 NL 294
L
Sbjct: 2292 QL 2293
Score = 127 (49.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 53/224 (23%), Positives = 94/224 (41%)
Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK-GKELYVHALDNDATC 233
IY Q +QA K ++A A +NLGN ++ VK E + ALD +
Sbjct: 1867 IYDQQNMKDQAIKQYQKALEIQPSYYTALLNLGNLYFWDKNMVKEANECFQKALDINPNS 1926
Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293
++ L L + N++ ++++ + K +I P E+ +A +Y G++++A + E
Sbjct: 1927 LQVLKRAALFYYSNNQFQEAIQNYEKALSIDPQDYEIFGCLAQVYHQIGNIQKAIKILEK 1986
Query: 294 LLLEAVRNDA----LSQLHRE--MKHEAEKCILTSAKLIAPSIEDNFSN-GYNWCVQSIR 346
+ + RN L E +K+EA +C L + + I P +N G +
Sbjct: 1987 AIKQNPRNHQFHYDLGNYSSEVGLKNEAIQCYLNALE-INPEFYQALNNLGGEYIFMERL 2045
Query: 347 NSAHSSLAQDLE---------INKAVTFLRMNDVSQAVDVLKSC 381
A S + LE I V + + +A D L+ C
Sbjct: 2046 EEAQSCFLKILETYPQDFNALIQLVVLCIERGMIEEAKDYLQKC 2089
Score = 55 (24.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 28/115 (24%), Positives = 52/115 (45%)
Query: 9 ERMEQEIIGLIDESCICARNQDFKAALEKAKLASN-KERVLIKLQEQFGHADSHNIELTF 67
E++ +E I ++ + N+ + EK K + K + IKLQ + + +NI++
Sbjct: 573 EKLVEEKIEKLNITKKRTLNEFLQGNSEKLKHEEDQKVKKHIKLQYE-KQTNQNNIQIWR 631
Query: 68 SNINRKKNARAVRNDALSQLH--REMKHEAEKCILT-SAKLIAPSIEDNFSNGYN 119
N N KN V + A S+ +++K+ +C L S K ++ F N
Sbjct: 632 DNFNAVKNNMEVEDTAFSECQYCKQIKYLC-RCNLNESTKQDIQIVQQFFEKPQN 685
>UNIPROTKB|G4NAC6 [details] [associations]
symbol:MGG_03196 "RCM-1" species:242507 "Magnaporthe oryzae
70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001440 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00515 Pfam:PF13181 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00028 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 EMBL:CM001234 RefSeq:XP_003716790.1
ProteinModelPortal:G4NAC6 EnsemblFungi:MGG_03196T0 GeneID:2676469
KEGG:mgr:MGG_03196 Uniprot:G4NAC6
Length = 923
Score = 132 (51.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 29/108 (26%), Positives = 56/108 (51%)
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
E+A + E++ AD ++ ++ LG C M+++ Y K E Y A+ D ++G+
Sbjct: 278 ERAIEYLEQSVAADNSDAQSWYLLGRCYMSQQKYPKAYEAYQQAVYRDGRNPTFWCSIGV 337
Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE-ITGDVEQASD 289
+ +N+Y D+L+ + + + P + EV Y + +LYE + A D
Sbjct: 338 LYYQINQYRDALDAYSRAIRLNPYLSEVWYDLGTLYESCNNQINDALD 385
>MGI|MGI:3039590 [details] [associations]
symbol:Tmtc1 "transmembrane and tetratricopeptide repeat
containing 1" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
MGI:MGI:3039590 GO:GO:0016021 GO:GO:0005739 eggNOG:COG0457
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000074327 InterPro:IPR013618 Pfam:PF08409
CTD:83857 HOVERGEN:HBG106148 OrthoDB:EOG41C6VN EMBL:AK046396
EMBL:AK137545 EMBL:AC126683 EMBL:AC142274 IPI:IPI00653264
IPI:IPI01007647 RefSeq:NP_945318.2 UniGene:Mm.137858
ProteinModelPortal:Q3UV71 SMR:Q3UV71 STRING:Q3UV71
PhosphoSite:Q3UV71 PRIDE:Q3UV71 Ensembl:ENSMUST00000060095
Ensembl:ENSMUST00000100772 GeneID:387314 KEGG:mmu:387314
UCSC:uc009eti.2 UCSC:uc009etj.2 HOGENOM:HOG000067906
InParanoid:Q3UV71 OMA:RLYPRHA NextBio:405818 Bgee:Q3UV71
Genevestigator:Q3UV71 Uniprot:Q3UV71
Length = 942
Score = 132 (51.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 62/255 (24%), Positives = 110/255 (43%)
Query: 129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKM 188
A+SSLA L + F D+ QA +K+C + +S N + G E+A
Sbjct: 644 AYSSLASLLAEQER--FKEAEDIYQAG--IKNCPD-SSDLHNNYAVFLVDSGFPEKAVAH 698
Query: 189 AEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248
++A + A VNLG + + K +E Y AL T E L LG + +
Sbjct: 699 YQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTA-EVLSPLGALYYNTG 757
Query: 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR----NDAL 304
+ ++LE + + ++ PS E+ +A + + G ++A + +++ E R L
Sbjct: 758 RHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLL 817
Query: 305 SQLHREMKH-----EA-EKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL--AQD 356
S +H + +H EA EK + K E F+ G Q++ + A S A
Sbjct: 818 SAIHSKQEHHGKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYEAAVT 877
Query: 357 LEINKAVTFLRMNDV 371
L+ ++A ++ M +
Sbjct: 878 LDPDQAQAWMNMGGI 892
>TAIR|locus:2080722 [details] [associations]
symbol:SPY "SPINDLY" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0016757
"transferase activity, transferring glycosyl groups" evidence=ISS]
[GO:0016262 "protein N-acetylglucosaminyltransferase activity"
evidence=TAS] [GO:0009938 "negative regulation of gibberellic acid
mediated signaling pathway" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000377 "regulation of
reactive oxygen species metabolic process" evidence=IMP]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001440 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF00515 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00028 UniPathway:UPA00378 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0030154
GO:GO:0006486 GO:GO:0048511 GO:GO:0009736 Gene3D:1.25.40.10
InterPro:IPR006597 SMART:SM00671 GO:GO:0009908 GO:GO:0016262
EMBL:AC008153 GO:GO:2000377 GO:GO:0009740 GO:GO:0009938 CAZy:GT41
eggNOG:COG3914 EMBL:U62135 EMBL:AK220931 EMBL:AK221192
EMBL:AK221314 IPI:IPI00544177 RefSeq:NP_187761.1 UniGene:At.17656
ProteinModelPortal:Q96301 SMR:Q96301 IntAct:Q96301 STRING:Q96301
PaxDb:Q96301 PRIDE:Q96301 ProMEX:Q96301 EnsemblPlants:AT3G11540.1
GeneID:820327 KEGG:ath:AT3G11540 GeneFarm:5156 TAIR:At3g11540
HOGENOM:HOG000030819 InParanoid:Q96301 OMA:GVPCVTM PhylomeDB:Q96301
ProtClustDB:CLSN2684418 Genevestigator:Q96301 Uniprot:Q96301
Length = 914
Score = 131 (51.2 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 48/199 (24%), Positives = 83/199 (41%)
Query: 136 DLEINKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEA 192
+ I K + N + A D D + A T+ ++ +G + +A + ++A
Sbjct: 78 EAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKA 137
Query: 193 CTAD-TYNSAA------FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
AD +Y AA +LG + +G + Y AL D A YNLG+ +
Sbjct: 138 LMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYS 197
Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL-----LEAVR 300
+ +Y ++L C+ K P E + +Y+ GD+E A E L E +
Sbjct: 198 EMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLEMAITCYERCLAVSPNFEIAK 257
Query: 301 ND---ALSQLHREMKHEAE 316
N+ AL+ L ++K E +
Sbjct: 258 NNMAIALTDLGTKVKLEGD 276
>TAIR|locus:2103025 [details] [associations]
symbol:SEC "secret agent" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0006493 "protein
O-linked glycosylation" evidence=ISS;IDA] [GO:0016757 "transferase
activity, transferring glycosyl groups" evidence=ISS;IDA]
InterPro:IPR001440 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00515 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 UniPathway:UPA00378 GO:GO:0007275 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0016757 GO:GO:0006493
Gene3D:1.25.40.10 EMBL:AC016829 CAZy:GT41 eggNOG:COG3914
HOGENOM:HOG000003765 KO:K09667 OMA:LAYMPNT EMBL:AF441079
EMBL:AY090938 EMBL:AY117340 IPI:IPI00524518 RefSeq:NP_187074.1
UniGene:At.27850 UniGene:At.71305 ProteinModelPortal:Q9M8Y0
SMR:Q9M8Y0 IntAct:Q9M8Y0 STRING:Q9M8Y0 PaxDb:Q9M8Y0 PRIDE:Q9M8Y0
EnsemblPlants:AT3G04240.1 GeneID:819579 KEGG:ath:AT3G04240
TAIR:At3g04240 InParanoid:Q9M8Y0 PhylomeDB:Q9M8Y0
ProtClustDB:CLSN2684273 Genevestigator:Q9M8Y0 GermOnline:AT3G04240
Uniprot:Q9M8Y0
Length = 977
Score = 123 (48.4 bits), Expect = 0.00043, P = 0.00043
Identities = 50/220 (22%), Positives = 92/220 (41%)
Query: 72 RKKNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSN-GYNWCVQSIRNSAH 130
R A A N A + + + EA +C + L P + D SN G Q + + A+
Sbjct: 151 RPNFADAWSNLASAYMRKGRLSEATQCCQQALSL-NPLLVDAHSNLGNLMKAQGLIHEAY 209
Query: 131 SSLAQDLEI---------NKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNLSFIYFL 178
S + + I N A F+ D+++A+ K ++ + A NL +Y
Sbjct: 210 SCYLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKA 269
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
G +A + A ++ AF N+ + + Y AL D +EA
Sbjct: 270 LGRPTEAIMCYQHALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYN 329
Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
NLG A K + +++ C+++ A+ P+ P+ + + ++Y
Sbjct: 330 NLGNALKDIGRVDEAVRCYNQCLALQPNHPQAMANLGNIY 369
>RGD|1564868 [details] [associations]
symbol:Tmtc1 "transmembrane and tetratricopeptide repeat
containing 1" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=ISO] InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
RGD:1564868 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000074327 InterPro:IPR013618 Pfam:PF08409
IPI:IPI00949555 ProteinModelPortal:D4A9Y4
Ensembl:ENSRNOT00000002535 UCSC:RGD:1564868 ArrayExpress:D4A9Y4
Uniprot:D4A9Y4
Length = 905
Score = 121 (47.7 bits), Expect = 0.00064, P = 0.00064
Identities = 59/256 (23%), Positives = 110/256 (42%)
Query: 129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKM 188
A+SSLA L + F DV QA +K+C + +S N + G E+A
Sbjct: 607 AYSSLASLLAEQER--FKEAEDVYQAG--IKNCPD-SSDLHNNYAVFLVDSGFPEKAVAH 661
Query: 189 AEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN 248
++A + A VNLG + + +E Y AL T E L LG + +
Sbjct: 662 YQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVARTA-EVLSPLGALYYNTG 720
Query: 249 EYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR----NDAL 304
+ ++LE + + ++ PS ++ +A + + G ++A + +++ E R L
Sbjct: 721 RHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLL 780
Query: 305 SQLHREMKHEAEKCILTSAKLIA-----PSI--EDNFSNGYNWCVQSIRNSAHSSL--AQ 355
S ++ + +H EK + K + P + E F+ G Q++ + A S A
Sbjct: 781 SAIYSKQEHH-EKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYEAAV 839
Query: 356 DLEINKAVTFLRMNDV 371
L+ ++A ++ M +
Sbjct: 840 TLDPDQAQAWMNMGGI 855
>UNIPROTKB|E1BG63 [details] [associations]
symbol:TMTC3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060447 "bud outgrowth involved in lung branching"
evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IEA]
[GO:0048286 "lung alveolus development" evidence=IEA] [GO:0010468
"regulation of gene expression" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF13174 Pfam:PF13181
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074327 InterPro:IPR013618 Pfam:PF08409
OMA:EAEMWMK EMBL:DAAA02012652 EMBL:DAAA02012653 IPI:IPI00703757
Ensembl:ENSBTAT00000011881 Uniprot:E1BG63
Length = 920
Score = 120 (47.3 bits), Expect = 0.00084, P = 0.00084
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
+ +E+A+++ +A + A+++ G + K KE Y+ AL+ D + Y
Sbjct: 547 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPAKAKEAYLKALELDRNNADLWY 606
Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
NL + H L E +D+L+ F+ + P L+ A L + +G+V + + LL
Sbjct: 607 NLAIVHIELKEPNDALKNFNHALELNPKHKLALFNSAILMQESGEVRLRPEARKRLL 663
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.128 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 425 425 0.00084 118 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 605 (64 KB)
Total size of DFA: 239 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.29u 0.11s 39.40t Elapsed: 00:00:02
Total cpu time: 39.30u 0.11s 39.41t Elapsed: 00:00:02
Start: Thu Aug 15 13:31:32 2013 End: Thu Aug 15 13:31:34 2013