RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1863
(425 letters)
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 73.3 bits (179), Expect = 5e-14
Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 3/160 (1%)
Query: 139 INKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
N A ++ +AV + + ++A +NL+ + QG++++A +EA
Sbjct: 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
+ A+ N+GN +D + Y A+ + +A NL HK +++
Sbjct: 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132
Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
+ + P P+ +A +I D + + L+
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172
Score = 72.5 bits (177), Expect = 7e-14
Identities = 27/120 (22%), Positives = 57/120 (47%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
+ NL+ I QG +E+A ++ +A +AA NL + + + Y A+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
T +A N+G K + + +L+C+ + I P+ + +AS+++ +G++ +A
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130
Score = 53.7 bits (128), Expect = 7e-08
Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 10/210 (4%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N A + + +A+ K + A +N+ +V+ A + A +
Sbjct: 48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
+ A NL + + + Y AL +A NL + + +++D E
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167
Query: 257 FHKLQAIVP------SMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHRE 310
KL +IV +P V + LY ++ +A + L + + L + E
Sbjct: 168 MKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKA-IAERHGNLCLDKINVLHKPPYE 226
Query: 311 MKHEAEKCILTSAKLIAPSIEDNFSNGYNW 340
+ + S N +
Sbjct: 227 HPKDLKLSDGRLRVGYVSSDFGNHPTSHLM 256
Score = 39.4 bits (91), Expect = 0.002
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
++L NL + +++ + K + P +AS+ + G +++A
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 72.2 bits (177), Expect = 8e-14
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 1/138 (0%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A L+ G+ E + + A LG ++ + + L A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
D LG A + + + + + ++P P + Q+ + D
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144
Query: 288 SDVNENLLLEAVRNDALS 305
DV + AV +
Sbjct: 145 -DVLSAQVRAAVAQGVGA 161
Score = 71.0 bits (174), Expect = 2e-13
Identities = 16/110 (14%), Positives = 33/110 (30%)
Query: 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEAL 237
+ + + A + A++ L + + D G+ L EA+
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
LG ++++ + P P + + E G E A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110
Score = 50.2 bits (120), Expect = 8e-07
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 3/151 (1%)
Query: 139 INKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
+ A L M D + ++ + A L + + Q +A + ++A A
Sbjct: 27 LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
+ + LG+ Y A L + L ++
Sbjct: 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146
Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
+++A V + A L E EQ
Sbjct: 147 LSAQVRAAVAQGVGAVEPFAFLSEDASAAEQ 177
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 71.3 bits (175), Expect = 2e-13
Identities = 40/276 (14%), Positives = 92/276 (33%), Gaps = 16/276 (5%)
Query: 28 NQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALS-- 85
N DF A + L N + +K+ + D + + + + L
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181
Query: 86 QLHREMKHEAEKCILTSAKLIAPSIED---NFSNGYNWCVQSIRNSAHSSLAQDLEI--- 139
++ ++ +L+ A S D +N + +S S+ D +
Sbjct: 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241
Query: 140 ------NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEE 191
+ N++ A +L+ + + + L+ + ++ K ++
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQK 301
Query: 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYS 251
A + + + G +DY KE + A + + L +++
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361
Query: 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+S F++ + P++PEV A + GD + A
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Score = 55.9 bits (135), Expect = 1e-08
Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 20/162 (12%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTA 195
I A + +++ + T + I +G+ + A K + A
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Query: 196 DTYNSAAFVNLGNC----------------AMAREDYVKGKELYVHALDNDATCIEALYN 239
+ V +G + E + +L A + D +A
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467
Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT 281
L + + +++E F + +M E Q + E
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDE-KLQATTFAEAA 508
Score = 55.9 bits (135), Expect = 1e-08
Identities = 22/113 (19%), Positives = 42/113 (37%)
Query: 149 NDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208
D++Q + S + + N +F +A K + A D + N+
Sbjct: 8 PDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISA 67
Query: 209 CAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
C ++ D K E AL+ +AL A++ L ++D++ L
Sbjct: 68 CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120
Score = 55.1 bits (133), Expect = 2e-08
Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 180 GEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
G E + + N GN +++ + + Y +A++ D
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENL 294
N+ + + +E K I P + L + AS E G+ A D++
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120
Query: 295 LLEAVRNDALSQ-LHREMKHEAEKC 318
L ++ L R + +A K
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKV 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 65.5 bits (160), Expect = 4e-13
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L F + G+ + A+K+ + C D Y++ F+ LG C + Y + + Y + D
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE--VLYQIASLY 278
++ H L + + F+ +A+ + P L A
Sbjct: 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
Score = 57.4 bits (139), Expect = 2e-10
Identities = 13/97 (13%), Positives = 28/97 (28%)
Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
LG + ++++ D LG + L Y
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68
Query: 251 SDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+L+ + + + P + A + GD++ A
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105
Score = 36.3 bits (84), Expect = 0.006
Identities = 11/92 (11%), Positives = 20/92 (21%), Gaps = 3/92 (3%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ A + + D + L G EQA + D
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228
+ C + D + + A
Sbjct: 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 68.7 bits (169), Expect = 7e-13
Identities = 21/117 (17%), Positives = 44/117 (37%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L+ + G+ E AE+ + + N+ + L + + A+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
EA NLG +K + +++E + + P + +A+ GD+E A
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Score = 66.4 bits (163), Expect = 4e-12
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 9/155 (5%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMT------SSAATNLSFIYFLQGEVEQAEKMAEEA 192
+ A + D A + C ++ + LS I+F ++++ + A
Sbjct: 3 MELAHREYQAGDFEAA---ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59
Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
+ + A+ NLGN R + E Y HAL I+ NL A +
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+++ + P + V + +L + G +E+A
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Score = 65.3 bits (160), Expect = 9e-12
Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
IN +AV + + NL+ +Y+ QG ++ A A
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
+ A+ NL N + + ++ Y AL T ++L NL + +++
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326
Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ K + P +AS+ + G +++A
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
Score = 64.9 bits (159), Expect = 1e-11
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + +A++ + + NL+ G++E A + A +
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
+LGN A + K Y+ A++ A NLG E ++
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
F K + P+ + + ++ + ++A
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222
Score = 61.0 bits (149), Expect = 2e-10
Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEACTAD 196
N A + D+ AV S + +L + G +E+A+ +A
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
+ A+ NLG A+ + + A+ D ++A NLG K + ++
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + ++ P+ V +A +Y G ++ A
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Score = 60.6 bits (148), Expect = 3e-10
Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N A + + A+D + A NL+ +G V +AE A
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
++ + NL N + + + LY AL+ A NL + + ++L
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGD 283
+ + I P+ + + + + D
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 59.5 bits (145), Expect = 7e-10
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + + +A + A +NL ++ QGE+ A E+A T D
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A++NLGN + + Y+ AL NL + +++
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + + P P+ +A+ + G V +A
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 65.5 bits (160), Expect = 1e-12
Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 22/176 (12%)
Query: 134 AQDLE--INKAVTFLRMNDVSQAVDVLK-------------------SCDEMTSSAATNL 172
Q ++ + K + QAV + E++S AT L
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 173 SFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
+ Y ++A +E N + R +Y L +A
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 233 CIEALYNLGLA-HKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A LG + + LE +K + M Y+ T E+A
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKA 176
Score = 52.1 bits (125), Expect = 5e-08
Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 16/134 (11%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF----------------VNLGNCAMARE 214
G+ QA + + + + L
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274
+Y K Y L ++ L + D+L + K+ + +
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 275 ASLYEITGDVEQAS 288
+ Y +T + E+
Sbjct: 129 GNYYYLTAEQEKKK 142
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 65.8 bits (161), Expect = 2e-12
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALD 228
N + Q E+A + EA Y S F NLG ++ + + KE + +L
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288
+ + EY + + + L L ++ D + A+
Sbjct: 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229
Query: 289 DVNENLL 295
L
Sbjct: 230 SYGLQLK 236
Score = 51.1 bits (123), Expect = 2e-07
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 2/120 (1%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
L Y +G EQA+ +A D ++ A L + E Y AL +
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHK--LQAIVPSMPEVLYQIASLYEITGDVEQA 287
D+ L N G Y ++ + + + P V + + QA
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160
Score = 48.4 bits (116), Expect = 1e-06
Identities = 14/104 (13%), Positives = 34/104 (32%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
S NL + + QA++ E++ + + + + + +YV ++ Y
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 226 ALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
+L K + + +L+ + P E
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
Score = 42.6 bits (101), Expect = 1e-04
Identities = 18/86 (20%), Positives = 31/86 (36%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
A++ LG + R + + K AL+ D + +A L + + E + E + K
Sbjct: 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98
Query: 262 AIVPSMPEVLYQIASLYEITGDVEQA 287
A VL E+A
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRYEEA 124
Score = 38.0 bits (89), Expect = 0.003
Identities = 11/83 (13%), Positives = 26/83 (31%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
+ + + G + + +A LGL + + K I
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67
Query: 265 PSMPEVLYQIASLYEITGDVEQA 287
PS + +A +++ + + A
Sbjct: 68 PSSADAHAALAVVFQTEMEPKLA 90
Score = 32.2 bits (74), Expect = 0.23
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + L+M +QA + + + S A ++ + + + E A + +
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236
N+ + + A ED + +E
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 65.8 bits (161), Expect = 5e-12
Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 41/225 (18%)
Query: 171 NLSFIYFLQGE-VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
+ Y + G E A + +A T + A++ G+ ++ + Y A
Sbjct: 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154
Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-- 287
C + +GL + N + F + +I P P V++++ + G+ + A
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214
Query: 288 --------SDVNENLLLEAVRNDALSQL---HREMKH--EAEKCILTSAKLIAPSIEDNF 334
N + L+ L R++K EA A ++ P
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY-HRQALVLIP----QN 269
Query: 335 SNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK 379
++ Y+ M + AVD
Sbjct: 270 ASTYS--------------------AIGYIHSLMGNFENAVDYFH 294
Score = 59.2 bits (144), Expect = 6e-10
Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 12/160 (7%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + N+ A + + + F GE + AEK +A
Sbjct: 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223
Query: 197 TY---------NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247
NLG+ + Y + + + AL +G H +
Sbjct: 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283
Query: 248 NEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ ++++ FH + + + E+ +A
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
Score = 53.8 bits (130), Expect = 3e-08
Identities = 9/118 (7%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+L+ ++ + + K+ D ++++ + + L +D
Sbjct: 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86
Query: 231 ATCIEALYNLGLAHKHLNEYSDS-LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + + +G + + ++ K + + + + + +QA
Sbjct: 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Score = 51.1 bits (123), Expect = 2e-07
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
+ +E + E+ N V+L D+ +L ++ D L
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG-DVEQA 287
LN+ ++ HKL + PS P + + Y + G E A
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110
Score = 50.8 bits (122), Expect = 3e-07
Identities = 13/127 (10%), Positives = 34/127 (26%), Gaps = 9/127 (7%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
+ ++ E +QA A + +G + + + AL
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 230 DATCIEALYNLGLAHKHLNEYSDSLECFHK---------LQAIVPSMPEVLYQIASLYEI 280
++ +G+ E+ + + F + V +L + +
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 281 TGDVEQA 287
+A
Sbjct: 249 LKKYAEA 255
Score = 40.7 bits (96), Expect = 5e-04
Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 12/131 (9%)
Query: 140 NKAVTFLRMNDVSQAVDVLK------------SCDEMTSSAATNLSFIYFLQGEVEQAEK 187
V + + A + NL + + +A
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHL 247
+A N++ + +G ++ + + AL ++ LG +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317
Query: 248 NEYSDSLECFH 258
S++
Sbjct: 318 IGDSEAYIGAD 328
Score = 39.2 bits (92), Expect = 0.002
Identities = 6/71 (8%), Positives = 21/71 (29%)
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284
++D ++ + +L H + ++ + + P L
Sbjct: 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 285 EQASDVNENLL 295
+ ++ L+
Sbjct: 73 NELFYLSHKLV 83
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 62.1 bits (151), Expect = 6e-12
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ ++ ++ +G +E+AE C D YN + L +E + + +LY A
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
+++ G L + ECF + E L A Y
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN--DEKLKIKAQSY 146
Score = 50.2 bits (120), Expect = 9e-08
Identities = 10/147 (6%), Positives = 42/147 (28%), Gaps = 4/147 (2%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAE---EACTADTYNSAAFVNLGNCAMAREDYVKGKELYV 224
+ N++ + V A + + + + + +
Sbjct: 1 GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284
D ++ + L ++ ++ + + + A+ + ++
Sbjct: 61 FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120
Query: 285 EQASDVNENLLLEAVRNDALSQLHREM 311
+A + E L+++ ++ L +
Sbjct: 121 LKAKECFE-LVIQHSNDEKLKIKAQSY 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 7e-12
Identities = 78/549 (14%), Positives = 155/549 (28%), Gaps = 188/549 (34%)
Query: 5 EEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIE 64
K E M Q+ + + ++K + K ++ ++ +N
Sbjct: 72 LSKQEEMVQKFVEEVLR-------INYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 65 LTFS--NINRKKNARAVRNDALSQLHRE-------MKHEAEKCILTSAKLIAPSIEDNFS 115
F+ N++R + +R AL +L + + K + ++ ++
Sbjct: 124 QVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMD 181
Query: 116 NGYNW-------------------CVQSIRNS---AHSSLAQDLEINKAVTFLR------ 147
W Q N + S L I+ LR
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 148 --------MNDVS-----QAVDVLKSC------------DEMTSSAATNLSFIYFLQG-- 180
+ +V A ++ SC D ++++ T++S +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 181 --EVEQ---------AEKMAEEACTADTYNSAAFVNLGNCAM---------AREDYVK-- 218
EV+ + + E T N ++ A D K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLT---------TNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS---MPEVLYQIA 275
+ ++ + + L E ++ + F +L ++ P +P +L +
Sbjct: 351 NCDKLTTIIE---SSLNVL-----------EPAEYRKMFDRL-SVFPPSAHIPTILLSLI 395
Query: 276 SLYEITGDVEQ-------ASDVNEN-----------LLLEAVRNDALSQLHREM--KHEA 315
I DV S V + L V+ + LHR + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 316 EKCILTSAKLIAPSIEDN---------------------FSNGY---NWCVQSIRNS--- 348
K + + P D F + + Q IR+
Sbjct: 456 PKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 349 --AHSSLA---QDLEINKAVTFLRMND------VSQAVDVLKSCDE-MTSSAATNLSFIY 396
A S+ Q L+ K ++ ND V+ +D L +E + S T+L I
Sbjct: 514 WNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 397 FLVSSEFQY 405
+ E +
Sbjct: 572 LMAEDEAIF 580
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 64.2 bits (157), Expect = 9e-12
Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 3/127 (2%)
Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDY---VKGK 220
M + F +A ++ + + + C Y K
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
E Y ++ G + S +++ + + ++ QI S +
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120
Query: 281 TGDVEQA 287
G+ A
Sbjct: 121 KGNFPLA 127
Score = 63.8 bits (156), Expect = 1e-11
Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Query: 136 DLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEA 192
D+E A + N+ ++A++V + ++ + Y+ + + A+K E
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 193 CTA---DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
+ SA F G M + + Y A+D D T ++ +G +
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ +++ K + P+V Y++ Y + +A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
Score = 56.1 bits (136), Expect = 4e-09
Identities = 18/116 (15%), Positives = 39/116 (33%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
I +G+ A + + A DT + +G+ + ++ + +
Sbjct: 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
T + Y LG A+ + EY + F K+ + P++ A +
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Score = 52.3 bits (126), Expect = 8e-08
Identities = 31/228 (13%), Positives = 59/228 (25%), Gaps = 36/228 (15%)
Query: 74 KNARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL 133
+ A+ A+K I T + + S +
Sbjct: 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFE-------------- 78
Query: 134 AQDLEINKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAE 190
++ S A+ + D + ++ +G A + E
Sbjct: 79 ------YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132
Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLN-- 248
+ T + F LG ++YVK +V L+ A+ +
Sbjct: 133 KQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPD 192
Query: 249 -EYSDSLECFHKLQAIVPSMP--------EVLYQIASLYEITGDVEQA 287
+ + + KL + E IA Y I D +A
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240
Score = 46.9 bits (112), Expect = 5e-06
Identities = 16/154 (10%), Positives = 40/154 (25%), Gaps = 14/154 (9%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
F + A+ ++ L Y+ E +A+ +
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172
Query: 197 TYNSAAFVNLGNC----------AMAREDYVKGKELYV-HALDNDATCIEALYNLGLAHK 245
++ +A+ Y K E+ IEA + +
Sbjct: 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
+ + + + A+ P+ + + + E
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Score = 37.3 bits (87), Expect = 0.007
Identities = 15/125 (12%), Positives = 30/125 (24%), Gaps = 14/125 (11%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAE------ 190
+ + +A E+ + Q +
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
Query: 191 --EACTADTYNSA---AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
A Y A + D VK + + L D T +A+ L + +
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 246 HLNEY 250
H + +
Sbjct: 267 HHHHH 271
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 65.5 bits (160), Expect = 1e-11
Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 10/264 (3%)
Query: 26 ARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDALS 85
A + + + AK +K+ L + ELTF+N + A + LS
Sbjct: 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195
Query: 86 QLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTF 145
L++ +K + K A + + + N + A + +
Sbjct: 196 NLYKRSPESYDKADESFTK--AARLFEEQLDKNNEDEKLKEKLA------ISLEHTGIFK 247
Query: 146 LRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF 203
ND A + +K E+ + ++ I + + + ++A D+ NS+ +
Sbjct: 248 FLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307
Query: 204 VNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
+ G ++Y + + + A + D I L N++ D F + +
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367
Query: 264 VPSMPEVLYQIASLYEITGDVEQA 287
P PEV A + D ++A
Sbjct: 368 FPEAPEVPNFFAEILTDKNDFDKA 391
Score = 64.4 bits (157), Expect = 3e-11
Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 12/149 (8%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
I A R N + + I + + ++A K + A
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401
Query: 196 DTYNSAAFVNLGNC---------AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246
+ +V + E++++ L A D +A L
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461
Query: 247 LNEYSDSLECFHKLQAIVPSMPEVLYQIA 275
+ +++ F + + +M E L I
Sbjct: 462 QEDIDEAITLFEESADLARTMEEKLQAIT 490
Score = 59.0 bits (143), Expect = 1e-09
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 9/160 (5%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDE------MTSSAATNLSFIYFLQGEVEQAEKMAEEA 192
I A+ ND ++ D+ SS + + F+ +QA K ++A
Sbjct: 274 IYMALIMADRNDSTEY---YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 193 CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
D N ++ L A + + L+ A E N++
Sbjct: 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390
Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNE 292
+L+ + + + + IA L + + V
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Score = 49.0 bits (117), Expect = 2e-06
Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 18/178 (10%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHA--LDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
+ A + GN + Y + Y A L D NL + + + +E
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---VFYSNLSACYVSVGDLKKVVEM 61
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA-------------SDVNENLLLEAVRNDA 303
K + P +VL + AS E G A +D + +LE N
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121
Query: 304 LSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINK 361
+E + + T +L ++ N + S +L
Sbjct: 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179
Score = 49.0 bits (117), Expect = 2e-06
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ +F + + A K A + + NL C ++ D K E+ AL+
Sbjct: 11 DKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
+ L A++ L +++D++ L
Sbjct: 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 64.2 bits (157), Expect = 2e-11
Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 19/168 (11%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEACTA 195
+A F++ + +A+ LK+ ++ S +S +Y+ G+ E + E
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKEL------------YVHAL----DNDATCIEALYN 239
D + F + + +EL Y + + +
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277
Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + +++ ++ + P L A Y I ++A
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325
Score = 56.5 bits (137), Expect = 6e-09
Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 6/183 (3%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
+ + LG +A + A+D D A Y + + +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLEAVRNDALSQLHREMKHEAEK 317
K+ A+ Q L G +++A D + L ++ + +A++
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--SEQEEKEAESQLVKADE 119
Query: 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDV 377
++ + +++ + + + + + +A F++ + +A+
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR---ELRAECFIKEGEPRKAISD 176
Query: 378 LKS 380
LK+
Sbjct: 177 LKA 179
Score = 53.4 bits (129), Expect = 5e-08
Identities = 18/167 (10%), Positives = 45/167 (26%), Gaps = 18/167 (10%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT------------------NLSFIYFLQG 180
+ + L+ + +A D K + S + + F
Sbjct: 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134
Query: 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
+ A ++ +++ C + + K A + EA Y +
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194
Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ L ++ SL + + + ++ +E A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241
Score = 50.3 bits (121), Expect = 6e-07
Identities = 18/158 (11%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMA-----EE 191
+ + ++ D ++ ++ C D+ + + L +E AE++ +
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Query: 192 ACTA-----------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
A + Y + + +C E V+ + L + + AL +
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
A+ Y ++++ + Q + ++ +
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
Score = 45.7 bits (109), Expect = 2e-05
Identities = 17/167 (10%), Positives = 52/167 (31%), Gaps = 18/167 (10%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM--TSSAA-TNLSFIYFLQGEVEQAEKMAEEACTA 195
+ L ++ A+ + + + A + ++ G+ + A +
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK---------- 245
+AA + G+ + + + ++ + L ++ + E K
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126
Query: 246 -----HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+Y+ ++ K+ + E+ A + G+ +A
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 139 INKAVTFLRMNDVSQAVDVLK-------SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEE 191
I A +R + A + S E T + + + + +A ++ E
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
Query: 192 ACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
+ N A + + E Y + + Y A +++ + L A + L +
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 64.1 bits (156), Expect = 3e-11
Identities = 17/117 (14%), Positives = 39/117 (33%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ Y ++ +A + ++ T D A++ + ++ + Y A
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
LG+ H L + E A+ P +L ++ + D++ A
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494
Score = 57.9 bits (140), Expect = 3e-09
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 3/133 (2%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL--- 222
+S +Y ++A++ +EA D AF L + + D L
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259
Query: 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
Y DA + +LY L L + E + + ++L A +
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319
Query: 283 DVEQASDVNENLL 295
+ +L
Sbjct: 320 RFIDVLAITTKIL 332
Score = 56.8 bits (137), Expect = 7e-09
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 10/150 (6%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM---TSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ +++ ++ A + L+S + L + F + +++ A + A
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505
Query: 197 TYNSA-------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
+ + NLG+ + Y + L + L + H
Sbjct: 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
++ H+ AI P+ + E
Sbjct: 566 PGLAITHLHESLAISPNEIMASDLLKRALE 595
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 58.8 bits (142), Expect = 1e-10
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 150 DVSQAVDVLKSCDEMTSS---AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNL 206
+ + +E++S +L+F + G E A + + C D Y+S F+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 207 GNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
G C A Y Y + D ++ E +++ Q ++ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 267 MPE 269
PE
Sbjct: 122 XPE 124
Score = 54.5 bits (131), Expect = 3e-09
Identities = 11/110 (10%), Positives = 27/110 (24%)
Query: 180 GEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239
G + + +L Y ++ D
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 240 LGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
LG + + +Y ++ + + P + A G++ +A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES 110
Score = 41.4 bits (97), Expect = 1e-04
Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 12/140 (8%)
Query: 128 SAHSSLAQDLEI---------NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFI 175
S ++A EI + A + A V ++ D S L
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
G+ + A D + C + + + + A + A E
Sbjct: 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124
Query: 236 ALYNLGLAHKHLNEYSDSLE 255
L E
Sbjct: 125 FXELSTRVSSMLEAIKLKKE 144
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 57.9 bits (141), Expect = 2e-10
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 28/140 (20%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
NL ++L G A E+ Y+ NLGN + ++
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYS-----NLGNAYIFLGEFETA 68
Query: 220 KELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSM 267
E Y L D ++ Y+LG + L +Y +++ K AI
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 268 PEVLYQIASLYEITGDVEQA 287
+ + + Y G+ +QA
Sbjct: 129 GRACWSLGNAYTALGNHDQA 148
Score = 51.0 bits (123), Expect = 6e-08
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)
Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYN 199
Q + + K + + NL Y GE E A + ++ A +
Sbjct: 34 QRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDS 253
+LGN +DY K + ++ L D A ++LG A+ L + +
Sbjct: 94 -----SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
Query: 254 LECFHK 259
+ K
Sbjct: 149 MHFAEK 154
Score = 46.4 bits (111), Expect = 2e-06
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 17/110 (15%)
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLA 243
A + NLGN ++ + L D A NLG A
Sbjct: 4 SRAAQGRAFG-----NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 244 HKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASLYEITGDVEQA 287
+ L E+ + E + K + + Y + + Y + D E+A
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108
Score = 33.7 bits (78), Expect = 0.043
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
+L Y L + E+A + +LGN A ++ +
Sbjct: 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW-----SLGNAYTALGNHDQA 148
Query: 220 KELYVHALD 228
L+
Sbjct: 149 MHFAEKHLE 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 56.7 bits (137), Expect = 2e-10
Identities = 15/96 (15%), Positives = 26/96 (27%)
Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY 223
M + +A E C + A+ +LG E
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
HA D I L ++H + + + +L
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110
Score = 52.1 bits (125), Expect = 1e-08
Identities = 10/83 (12%), Positives = 25/83 (30%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
G + + + + + EA +LGL + ++ + + +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 265 PSMPEVLYQIASLYEITGDVEQA 287
P V +A + + A
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAA 104
Score = 33.2 bits (76), Expect = 0.049
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 3/94 (3%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ ++ L++ ++++A + + A +L + A A D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ A L + L +
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 32.8 bits (75), Expect = 0.054
Identities = 10/65 (15%), Positives = 17/65 (26%)
Query: 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
Y +N E GL+ L +++ F + P E +
Sbjct: 6 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE 65
Query: 283 DVEQA 287
A
Sbjct: 66 KDGLA 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 60.5 bits (147), Expect = 3e-10
Identities = 26/230 (11%), Positives = 77/230 (33%), Gaps = 18/230 (7%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ + Q+ E + LG +A + A+D D
Sbjct: 8 SSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVDGD 56
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDV 290
A Y + + +L K+ + Q L G +++A D
Sbjct: 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116
Query: 291 NENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAH 350
+ +L++ ++ + + ++++ ++ + +++ + + +
Sbjct: 117 FKK-VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175
Query: 351 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSS---AATNLSFIYF 397
+ + +A F++ + +A+ LK+ ++ + A +S +Y+
Sbjct: 176 DAELR---ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Score = 55.1 bits (133), Expect = 2e-08
Identities = 20/177 (11%), Positives = 60/177 (33%), Gaps = 20/177 (11%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMA-----EE 191
+ + ++ D ++ ++ C D+ + + L +E AE++ +
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275
Query: 192 ACTA-----------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
A + Y + + +C E V+ + L + + AL +
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335
Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLE 297
A+ Y ++++ + Q + ++ + + ++ D + L ++
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR-DYYKILGVK 391
Score = 54.7 bits (132), Expect = 3e-08
Identities = 19/188 (10%), Positives = 50/188 (26%), Gaps = 21/188 (11%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSCDEM------------------TSSAATNLSFIYFLQG 180
+ + L+ + +A D K + + + F G
Sbjct: 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157
Query: 181 EVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
+ A ++ +++ C + + K A EA Y +
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217
Query: 241 GLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD-VNENLLLEAV 299
+ L ++ SL + + + ++ +E A + + + +A
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277
Query: 300 R--NDALS 305
+
Sbjct: 278 SKYESVMK 285
Score = 50.8 bits (122), Expect = 4e-07
Identities = 19/141 (13%), Positives = 34/141 (24%), Gaps = 8/141 (5%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199
+ V N Q++ L G++ A A D N
Sbjct: 8 SSGVDLGTENLYFQSMA--------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 59
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
A+ +A + A G + ++ + F K
Sbjct: 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119
Query: 260 LQAIVPSMPEVLYQIASLYEI 280
+ PS E + L +
Sbjct: 120 VLKSNPSENEEKEAQSQLIKS 140
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 60.4 bits (147), Expect = 4e-10
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 35/187 (18%)
Query: 126 RNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVE 183
RN + +AV F + + + +++ + + NL Y+L G+ +
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQ-----ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 184 QAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD---- 228
A + +E + NLGN + + E Y L
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANS-----NLGNSHIFLGQFEDAAEHYKRTLALAVE 295
Query: 229 --NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPEVLYQIASLYEI 280
++ Y+LG + L+E++ ++E ++ AI + + + +
Sbjct: 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355
Query: 281 TGDVEQA 287
G E+A
Sbjct: 356 IGGHERA 362
Score = 57.3 bits (139), Expect = 3e-09
Identities = 29/205 (14%), Positives = 53/205 (25%), Gaps = 34/205 (16%)
Query: 122 VQSIRNSAHSSLAQDL-EINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFL 178
+ S+ SA + + L D +S
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSH-----DGNSQQGSGSDGGSSMCLELALEGERLCN 60
Query: 179 QGEVEQAEKMAEEA---------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD- 228
G+ + A + Y+ LGN DY K + + H L
Sbjct: 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYS-----QLGNAYFYLGDYNKAMQYHKHDLTL 115
Query: 229 ----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASL 277
ND ++ NLG K + + ++ C + + S LY + ++
Sbjct: 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175
Query: 278 YEITGDVEQASDVNENLLLEAVRND 302
Y G + +
Sbjct: 176 YHAKGKHLGQRNPGKFGDDVKEALT 200
Score = 51.1 bits (123), Expect = 3e-07
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 31/139 (22%)
Query: 141 KAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEAC----- 193
A+ + + + + + + + NL + G+ E A + +
Sbjct: 241 AAIEHHQ-----ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295
Query: 194 ------TADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL-------DNDATCIEALYNL 240
A + +LGN ++ E + L D A ++L
Sbjct: 296 LGEREVEAQSCY-----SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA-RACWSL 349
Query: 241 GLAHKHLNEYSDSLECFHK 259
G AH + + +L+ +
Sbjct: 350 GNAHSAIGGHERALKYAEQ 368
Score = 50.4 bits (121), Expect = 5e-07
Identities = 21/157 (13%), Positives = 38/157 (24%), Gaps = 45/157 (28%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
NL + G ++A E NLGN A+ ++
Sbjct: 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY-----NLGNVYHAKGKHLGQ 185
Query: 220 KELYVHALDNDATCIEA-----------------------LYNLGLAHKHLNEYSDSLEC 256
+ D A NLG + L ++ ++E
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245
Query: 257 FHKLQAIV------PSMPEVLYQIASLYEITGDVEQA 287
+ I + + + + G E A
Sbjct: 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Score = 35.4 bits (82), Expect = 0.030
Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 23/102 (22%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA----- 192
A + + + + E A + +L Y L E A +
Sbjct: 280 EDAAEHYK-----RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334
Query: 193 ------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228
A +LGN A + + + L
Sbjct: 335 ELGDRIGEARACW-----SLGNAHSAIGGHERALKYAEQHLQ 371
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 59.7 bits (145), Expect = 5e-10
Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 1/134 (0%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A +G++ E A D ++ A+ LG E+ L
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ ++AL L +++ + + D+ E P ++ +T + ++
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 288 SDVNENLLLEAVRN 301
+ ++L
Sbjct: 187 PV-DSSVLEGVKEL 199
Score = 42.7 bits (101), Expect = 1e-04
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 2/111 (1%)
Query: 179 QGEVEQAEKMAEEACT--ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236
+E +++ EA D + LG ++ + + + AL
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
LG + + +++E + + I P Y + G +A
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300
Score = 41.2 bits (97), Expect = 4e-04
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKE 221
D + T L ++ L GE +A A T + + + LG + + E
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 222 LYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA-----S 276
Y AL+ I + YNLG++ +L Y +++ F ++ +
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN 328
Query: 277 LYEITGDVEQASDVNENLLLEAVRNDALSQLHRE 310
++ D E L +A L L R
Sbjct: 329 IWAALRIALSLMDQPE--LFQAANLGDLDVLLRA 360
Score = 41.2 bits (97), Expect = 5e-04
Identities = 15/137 (10%), Positives = 34/137 (24%), Gaps = 3/137 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + L+ D+ + +++ A L + A +
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
N A + L E + + + + N + S S
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189
Query: 257 FHKLQAIVPSMPEVLYQ 273
L+ + E +Q
Sbjct: 190 SSVLEGVKELYLEAAHQ 206
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 57.7 bits (140), Expect = 6e-10
Identities = 12/150 (8%), Positives = 38/150 (25%), Gaps = 29/150 (19%)
Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCA 210
S A L ++Y ++A + + +G
Sbjct: 22 PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALH-----QVGMVE 76
Query: 211 MAREDYVKGKELYVHALD------NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAI 263
++ + ++ + D Y + H + + + + + K
Sbjct: 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136
Query: 264 ------VPSMPEVLYQIASLYEITGDVEQA 287
++ + L + ++ +A
Sbjct: 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEA 166
Score = 49.6 bits (119), Expect = 3e-07
Identities = 16/157 (10%), Positives = 44/157 (28%), Gaps = 31/157 (19%)
Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEACT------------ADTY 198
+ + T+ + + + G + A + E +
Sbjct: 51 ALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSD 252
+ A+ D ++ Y +L +D I A LG + +
Sbjct: 111 Y-----EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165
Query: 253 SLECFHKLQAIV------PSMPEVLYQIASLYEITGD 283
+ + + + + I ++ E++ ++ L
Sbjct: 166 AQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Score = 47.3 bits (113), Expect = 2e-06
Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMARE 214
S+ A ++ + G++ A + E++ A + LG+ A +
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR-----GLGDLAQQEK 161
Query: 215 DYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEY 250
+ ++ ++ ++ A D D+ + E + L H + +
Sbjct: 162 NLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 36.5 bits (85), Expect = 0.008
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VP 265
A + + ++ L + AT A + LG + ++ + ++ F LQ
Sbjct: 5 AHDYALAERQAQ-ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 266 SMPEVLYQIASLYEITGDVEQA 287
+ L+Q+ + + G+ + A
Sbjct: 64 AEHRALHQVGMVERMAGNWDAA 85
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 57.6 bits (140), Expect = 1e-09
Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 2/150 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEM--TSSAATNLSFIYFLQGEVEQAEKMAEEACTADT 197
+ +F R+ + + LK E S + I E+ K AE +
Sbjct: 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
+ G + D+ + Y + N A L + +++
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+K P+ + A+ + A
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASA 226
Score = 51.0 bits (123), Expect = 2e-07
Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 5/144 (3%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
A ++ + + + ++ + + A YF + + A K E
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
++ + N + + A++ D + A A + EY+ +LE
Sbjct: 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Query: 257 FHKLQAIVPSMPEVLY--QIASLY 278
+ + +I LY
Sbjct: 230 LDAARTKDAEVNNGSSAREIDQLY 253
Score = 45.6 bits (109), Expect = 1e-05
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 1/121 (0%)
Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
+ N + + +GE E A +A A + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
++ + + L L+ + P E Y D
Sbjct: 99 IEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157
Query: 287 A 287
A
Sbjct: 158 A 158
Score = 43.3 bits (103), Expect = 7e-05
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHA--LDNDATCIEALYNLGLAHKHLNEYSD 252
AD GN + + E Y A L D I L N A EY
Sbjct: 5 ADKEK-----AEGNKFYKARQFDEAIEHYNKAWELHKD---ITYLNNRAAAEYEKGEYET 56
Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
++ + M I+ + G+
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91
Score = 41.8 bits (99), Expect = 2e-04
Identities = 9/117 (7%), Positives = 29/117 (24%), Gaps = 2/117 (1%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
++ + ++A + +A + N + +Y A++
Sbjct: 10 AEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + + L K ++ A + + E+
Sbjct: 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKE 124
Score = 40.6 bits (96), Expect = 5e-04
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT------SSAATNLSFIYFLQGEVEQAEKMAEEAC 193
+ + +D AV K+ EM + +N + +A +A
Sbjct: 144 LEGKEYFTKSDWPNAV---KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200
Query: 194 TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
D A++ +A ++Y E A DA + +
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 2e-09
Identities = 69/424 (16%), Positives = 127/424 (29%), Gaps = 141/424 (33%)
Query: 51 LQEQFGHADSHNIELTFSNINRKKNARAVRNDALSQLHREMKHEAEKCILTSAKL--IAP 108
LQEQF + A ++ + L L ++
Sbjct: 33 LQEQF-----------NKILPEPTEGFAADDEPTTPAE-----------LVGKFLGYVSS 70
Query: 109 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 168
+E + ++ + + +L ND+ L ++ T
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFEN------------CYLEGNDIHALAAKLLQENDTTLVK 118
Query: 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAF--VNLGNCAMAR-----------ED 215
L Y A MA+ NSA F V GN A+ +D
Sbjct: 119 TKELIKNYI------TARIMAKRPFDK-KSNSALFRAVGEGN---AQLVAIFGGQGNTDD 168
Query: 216 YVKG-KELYVHALDNDATCIEALYNLGLAHKHLNE-----------YSDSLECFHKLQ-- 261
Y + ++LY + L + + + L+E ++ L L+
Sbjct: 169 YFEELRDLY----QTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 262 ---------AIVP-SMPEV-LYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHRE 310
+P S P + + Q+A Y +T + L ++ +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAH-YVVTA---KLLGFTPGELRSYLK--GAT----- 271
Query: 311 MKHEAEKCILTSAKLIA-----PSIEDNFSNGYNW-------CVQSIRNSA-HSSLAQD- 356
H L +A IA S + C ++ N++ S+ +D
Sbjct: 272 -GHSQG---LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 357 LEINKAV-TF-LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLVSSEFQYLPTSE-VPI 413
LE N+ V + L +++++Q V ++ TN +LP + V I
Sbjct: 328 LENNEGVPSPMLSISNLTQE-QVQDYVNK------TN------------SHLPAGKQVEI 368
Query: 414 YLEN 417
L N
Sbjct: 369 SLVN 372
Score = 37.7 bits (87), Expect = 0.008
Identities = 36/211 (17%), Positives = 58/211 (27%), Gaps = 67/211 (31%)
Query: 219 GKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECFHKLQAIVPSMPEVLY----- 272
G +LY + + ++N A H + Y S + IV + P L
Sbjct: 1632 GMDLY-----KTSKAAQDVWN--RADNHFKDTYGFS------ILDIVINNPVNLTIHFGG 1678
Query: 273 ----QI-----ASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKC----- 318
+I A ++E D E + E N+ + E
Sbjct: 1679 EKGKRIRENYSAMIFETIVD---GKLKTEKIFKEI--NEHSTSYTFR--SEKGLLSATQF 1731
Query: 319 ----ILTSAKLIAPSIEDNF-----------SNG-YNWCVQSIRNSAHSSLAQDLEINKA 362
+ K ++ S G Y +A +SLA + I
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY---------AALASLADVMSIESL 1782
Query: 363 V--TFLRMNDVSQAVDVLKSCDEMTSSAATN 391
V F R + AV + A N
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 56.9 bits (138), Expect = 3e-09
Identities = 18/121 (14%), Positives = 31/121 (25%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
+ +A E C A A+ +LG E HA
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
D I L ++H + + + +L P ++ D+
Sbjct: 83 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Query: 288 S 288
S
Sbjct: 143 S 143
Score = 48.1 bits (115), Expect = 2e-06
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 18/166 (10%)
Query: 140 NKAVTFLRMNDVSQAVDVLK------------------SCDEMTSSAATNLSFIYFLQGE 181
AV+ ++ + A+ L+ + ++ + F + E
Sbjct: 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
Query: 182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
+ + A + ++ +LG +Y A++ + LG
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 242 LAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ N ++L+ +++ I P V+Y +A Y + A
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 41.9 bits (99), Expect = 3e-04
Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 24/165 (14%)
Query: 109 SIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSA 168
+ + + + A + ++ F N+ + +L + EM +
Sbjct: 117 LSQPQYEQLGS-----VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171
Query: 169 A---TNLSFIYFLQGEVEQAEKMAEEACT-----ADTYNS--AAFVNLGNCAMAREDYVK 218
A +L +Y L + A A A +N A N A + Y +
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 219 GKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
ALD + + +YN+ +++ ++++Y + + ++AI
Sbjct: 232 -------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL--VRAI 267
Score = 36.1 bits (84), Expect = 0.015
Identities = 10/73 (13%), Positives = 19/73 (26%)
Query: 215 DYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQI 274
++ Y +N E GL+ L +++ F + P E +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 275 ASLYEITGDVEQA 287
A
Sbjct: 62 GLTQAENEKDGLA 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 56.9 bits (138), Expect = 4e-09
Identities = 28/158 (17%), Positives = 43/158 (27%), Gaps = 26/158 (16%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEA---------CTADTYNSAAFVNLGNCAMAREDYVKGK 220
G+ E A + Y+ LGN DY K
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-----QLGNAYFYLHDYAKAL 63
Query: 221 ELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMP 268
E + H L D +A NLG K L + +++ C + I
Sbjct: 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123
Query: 269 EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
LY + ++Y G + +AL
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161
Score = 49.6 bits (119), Expect = 9e-07
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)
Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYN 199
Q + + K + + NL Y GE E A + ++ A +
Sbjct: 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDS 253
+LGN +DY K + ++ L D A ++LG A+ L + +
Sbjct: 268 -----SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322
Query: 254 LECFHK 259
+ K
Sbjct: 323 MHFAEK 328
Score = 44.5 bits (106), Expect = 4e-05
Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 38/155 (24%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNS--AAFVNLGNCAMA----- 212
NL + G ++A + A + + G
Sbjct: 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147
Query: 213 --------REDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFH 258
R +LY L D A NLG H L + D++
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207
Query: 259 KLQAI------VPSMPEVLYQIASLYEITGDVEQA 287
+ I + + + Y G+ E A
Sbjct: 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242
Score = 43.8 bits (104), Expect = 7e-05
Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 33/174 (18%)
Query: 131 SSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM-------TSSAATNLSFIYFLQGEVE 183
S+ +L + + D V ++ ++ S+ + L YF +
Sbjct: 2 SASCLEL-ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 184 QAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD---- 228
+A + A NLGN ++ + LD
Sbjct: 61 KALEYHHHDLTLARTIGDQLGEAKASG-----NLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Query: 229 -NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA-SLYE 279
ND ALYNLG + + + Q A LYE
Sbjct: 116 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA--LQAAVDLYE 167
Score = 33.0 bits (76), Expect = 0.15
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
+L Y L + E+A + +LGN A ++ +
Sbjct: 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW-----SLGNAYTALGNHDQA 322
Query: 220 KELYVHALD 228
L+
Sbjct: 323 MHFAEKHLE 331
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 56.9 bits (138), Expect = 5e-09
Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 35/196 (17%)
Query: 117 GYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSF 174
G ++ ++ + AV F + + ++ + + + NL
Sbjct: 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYE-----ENLSLVTALGDRAAQGRAFGNLGN 195
Query: 175 IYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKGKELY 223
++L G A E+ Y+ NLGN + ++ E Y
Sbjct: 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS-----NLGNAYIFLGEFETASEYY 250
Query: 224 VHALD------NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPEVL 271
L + A ++ Y+LG + L +Y +++ K AI
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310
Query: 272 YQIASLYEITGDVEQA 287
+ + + Y G+ +QA
Sbjct: 311 WSLGNAYTALGNHDQA 326
Score = 56.5 bits (137), Expect = 6e-09
Identities = 29/158 (18%), Positives = 43/158 (27%), Gaps = 26/158 (16%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEA---------CTADTYNSAAFVNLGNCAMAREDYVKGK 220
G+ E A + Y+ LGN DY K
Sbjct: 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-----QLGNAYFYLHDYAKAL 67
Query: 221 ELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMP 268
E + H L D +A NLG K L + +++ C + I
Sbjct: 68 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127
Query: 269 EVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
LY + ++Y G + DAL
Sbjct: 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165
Score = 52.7 bits (127), Expect = 1e-07
Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 32/190 (16%)
Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYN 199
Q + + K + + NL Y GE E A + ++ A +
Sbjct: 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALD-----NDATCI-EALYNLGLAHKHLNEYSDS 253
+LGN +DY K + ++ L ND A ++LG A+ L + +
Sbjct: 272 -----SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326
Query: 254 LECFHKLQAI------VPSMPEVLYQIASLYEITGDV-EQASDV-NENLLLEAVRNDALS 305
+ K I ++ L + G + + +EN +++ N
Sbjct: 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRP 386
Query: 306 QLHREMKHEA 315
+L R E
Sbjct: 387 KLGRRHSMEN 396
Score = 35.4 bits (82), Expect = 0.033
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI----VPSMPEVLYQIASLYEITGD 283
+A+C+ L G + + F + + ++ + Q+ + Y D
Sbjct: 4 SMEASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD 62
Query: 284 VEQA 287
+A
Sbjct: 63 YAKA 66
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 55.4 bits (134), Expect = 1e-08
Identities = 15/106 (14%), Positives = 31/106 (29%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
+G++ A + E A D + A+ LG E + L
Sbjct: 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273
+ AL L ++ + + + E P+ ++
Sbjct: 126 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171
Score = 45.0 bits (107), Expect = 2e-05
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 4/124 (3%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYN----SAAFVNLGNCAMAREDYVKGKELY 223
A + +L + ++ + N G + D L+
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283
A+ D +EA LG + ++ + + P L +A +
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147
Query: 284 VEQA 287
QA
Sbjct: 148 QRQA 151
Score = 40.8 bits (96), Expect = 6e-04
Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 22/169 (13%)
Query: 140 NKAVTFLRMNDVSQAVDVLK------------SCDEMTSSAATNLSFIYFLQGEVEQAEK 187
AV+F + QA ++L+ + L + G +
Sbjct: 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196
Query: 188 MAEEACTA---------DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
E + + LG +Y K + + AL
Sbjct: 197 F-LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255
Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
LG + N+ +++ + + + P Y + G +A
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/109 (18%), Positives = 42/109 (38%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L ++ L GE ++A A + + + LG + Y AL+
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
I + YNLG++ +L + +++E F + + + ++ E
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330
Score = 30.8 bits (70), Expect = 0.80
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 20/169 (11%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSC---DEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTA 195
+ + L+ D+ AV + ++ D A L + A
Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALD---------NDATCIEALYNLGLAHKH 246
N A + L + E+ L A LG + +
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187
Query: 247 LN------EYSDSLECFHKLQAIVPSM--PEVLYQIASLYEITGDVEQA 287
L + + E F + P+ P+V + L+ ++G+ ++A
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 54.0 bits (130), Expect = 1e-08
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 16/136 (11%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199
N+ V D A+D + + S N+ +Y + + +AEK + D +
Sbjct: 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHAL----DNDAT------------CIEALYNLGLA 243
+ A+ G E Y + AL N E LYN+
Sbjct: 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130
Query: 244 HKHLNEYSDSLECFHK 259
+ E+ + E
Sbjct: 131 YAKKEEWKKAEEQLAL 146
Score = 52.0 bits (125), Expect = 5e-08
Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 23/135 (17%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
N + + + + A +S N+G ++ + ++ + +++ D
Sbjct: 11 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------------------EVLY 272
A + G+ + +Y +++ + A++ EVLY
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKE--ALIQLRGNQLIDYKILGLQFKLFACEVLY 125
Query: 273 QIASLYEITGDVEQA 287
IA +Y + ++A
Sbjct: 126 NIAFMYAKKEEWKKA 140
Score = 37.4 bits (87), Expect = 0.004
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+L+N G+ ++ +L+ F +Q + + I +Y I ++ +A
Sbjct: 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEA 56
Score = 27.8 bits (62), Expect = 6.4
Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 19/123 (15%)
Query: 140 NKAVTFLRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
N + + ++++A + D+ + A +Y+ + + A K +EA
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101
Query: 197 TYNSA----------------AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNL 240
N N+ +E++ K +E A + + +
Sbjct: 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161
Query: 241 GLA 243
+
Sbjct: 162 AME 164
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 55.5 bits (134), Expect = 2e-08
Identities = 16/151 (10%), Positives = 38/151 (25%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT---NLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + V + + VL +T + V++ + +A
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A + A E + A + A+ + G + L L
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + P + + V++
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRL 227
Score = 54.0 bits (130), Expect = 5e-08
Identities = 15/151 (9%), Positives = 36/151 (23%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + V + + VL +T + V++ + +A
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 374
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A + G A E + + A + A+ + + L L
Sbjct: 375 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPV 434
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + P + +
Sbjct: 435 LCQAHGLTPQQVVAIASNGGGRPALESIVAQ 465
Score = 54.0 bits (130), Expect = 5e-08
Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + + V + + VL +T A + V++ + +A
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A + A E + + A + A+ + G + L L
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + P + + V++
Sbjct: 401 LCQAHGLTPEQVVAIASHDGGKQALETVQRL 431
Score = 51.3 bits (123), Expect = 3e-07
Identities = 12/117 (10%), Positives = 30/117 (25%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ V++ + +A A + G A E + + A
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + + L L + + P + + V++
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 329
Score = 50.9 bits (122), Expect = 4e-07
Identities = 13/117 (11%), Positives = 30/117 (25%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ V+ + +A A + G A E + + A
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + G + L L + + P + + V++
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261
Score = 47.1 bits (112), Expect = 7e-06
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 3/129 (2%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + V + + VL +T A + V++ + +A
Sbjct: 349 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A + A E + + A + A+ + G L L
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Query: 257 FHKLQAIVP 265
A +
Sbjct: 469 PDPALAALT 477
Score = 47.1 bits (112), Expect = 7e-06
Identities = 9/120 (7%), Positives = 25/120 (20%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
+ ++ + A + A E + + A
Sbjct: 40 KIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH 99
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + + L L + + P + + V+
Sbjct: 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQAL 159
Score = 46.7 bits (111), Expect = 1e-05
Identities = 13/117 (11%), Positives = 29/117 (24%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
S L+ + A ++ DT G + L L+
Sbjct: 9 QWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT 68
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + + L L + + P + + V++
Sbjct: 69 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 51.3 bits (123), Expect = 2e-08
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 178 LQGEVEQAEKMAEEA---CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
+ G QA E+A + ++ LG+ +Y K + + + +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL-YQIA-SLYE 279
+ +L Y +E K+ A + Y+ A Y
Sbjct: 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108
Score = 42.0 bits (99), Expect = 3e-05
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 221 ELYVHALD---NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
Y A+ E LG + L EY + P+ + A +
Sbjct: 11 PYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV 70
Query: 278 YEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEK 317
G EQ ++ ++ E ++ + + + A+K
Sbjct: 71 LYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 54.4 bits (131), Expect = 2e-08
Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 29/141 (20%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA------------CTADTYNSAAFVNLGNCAMAREDYVK 218
+S Y+ + + A +A ++ + + Y
Sbjct: 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS-----LFATNFLDLKQYED 202
Query: 219 GKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPS 266
+ A LYN+GL ++Y D++ F + A+ +PS
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262
Query: 267 MPEVLYQIASLYEITGDVEQA 287
+P+ + I ++ G +++A
Sbjct: 263 LPQAYFLITQIHYKLGKIDKA 283
Score = 52.9 bits (127), Expect = 1e-07
Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 32/232 (13%)
Query: 84 LSQLHREMKH----EAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 139
+++ + ++ +AE K +E++ + + R H+ + + LE
Sbjct: 16 INEWYMYIRRFSIPDAEYL-RREIKQELDQMEEDQDLHLYYSLMEFR---HNLMLEYLEP 71
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSF-----IYFLQGEVEQAEKMAEEA-- 192
+ + +S + + + Q E A K ++A
Sbjct: 72 LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131
Query: 193 ---------CTADTYNSAAFV--NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
A+ + + + + + + E+Y + ++
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191
Query: 242 LAHKHLNEYSDSLECFHKLQAIVPSMPE------VLYQIASLYEITGDVEQA 287
L +Y D++ F K ++ + + LY I E A
Sbjct: 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243
Score = 46.4 bits (110), Expect = 1e-05
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 27/146 (18%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
+ + + E A ++A T N+G C ++ Y
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY-----NIGLCKNSQSQYEDA 243
Query: 220 KELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ 273
+ A+ + + +A + + H L + + E K A +V+Y
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303
Query: 274 -----IASLYEITGDVEQASDVNENL 294
+ SLY D E + L
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFL 329
Score = 44.8 bits (106), Expect = 3e-05
Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 17/153 (11%)
Query: 153 QAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAEEAC-----TADTYNSA-AFV 204
+A + ++ + T N+ Q + E A + A + + A+
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268
Query: 205 NLGNCAMAREDYVKGKELYVHALD--------NDATCIEALYNLGLAHKHLNEYSDSLEC 256
+ K E + + + E L +L L+ +
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
+ + +A Y + ++AS
Sbjct: 329 LESKMLY-ADLEDFAIDVAKYYHERKNFQKASA 360
Score = 37.5 bits (87), Expect = 0.006
Identities = 10/96 (10%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEAC-----TADTYNSAAFVNLGNCAMAREDYVKGKEL--Y 223
++ I++ G++++A + + D + F L + ++ D + +
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328
Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
+ + A + ++ + + + F K
Sbjct: 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 55.0 bits (132), Expect = 3e-08
Identities = 23/225 (10%), Positives = 55/225 (24%), Gaps = 12/225 (5%)
Query: 75 NARAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 134
A+ + + E + + + L + SN + L
Sbjct: 462 QVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLC 521
Query: 135 QDLEI---------NKAVTFLRMNDVSQAVDVLKSCDEMT---SSAATNLSFIYFLQGEV 182
Q + + + V + + VL +T A + V
Sbjct: 522 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 581
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGL 242
++ + +A A + A E + + A + A+ +
Sbjct: 582 QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641
Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ L L + + P + + V++
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Score = 50.8 bits (121), Expect = 6e-07
Identities = 21/199 (10%), Positives = 48/199 (24%), Gaps = 6/199 (3%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A + + V++ + +A A + A E + + A
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH 253
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + + L L + + P + + V++
Sbjct: 254 GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRL 313
Query: 288 SDVNENLL------LEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWC 341
V + A+ + + E + + L + SNG
Sbjct: 314 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373
Query: 342 VQSIRNSAHSSLAQDLEIN 360
L Q +
Sbjct: 374 ALETVQRLLPVLCQAHGLT 392
Score = 50.4 bits (120), Expect = 8e-07
Identities = 12/121 (9%), Positives = 30/121 (24%)
Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
A + V++ + +A A + A E + + A
Sbjct: 600 VAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA 659
Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
+ A+ + G + L L + + + + V++
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Query: 287 A 287
Sbjct: 720 L 720
Score = 49.3 bits (117), Expect = 2e-06
Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 1/120 (0%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A + V++ + +A A + A E + + A
Sbjct: 296 AIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAH 355
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + G + L L + + P + + V++
Sbjct: 356 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL-ETVQRL 414
Score = 47.7 bits (113), Expect = 6e-06
Identities = 16/151 (10%), Positives = 40/151 (26%), Gaps = 3/151 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + V + + VL +T + + V++ + +A
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A + G A E + + A + A+ + + L L
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + P + + V++
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRL 754
Score = 45.4 bits (107), Expect = 3e-05
Identities = 23/230 (10%), Positives = 56/230 (24%), Gaps = 9/230 (3%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAA---TNLSFIYFLQGEVEQAEKMAEEACTAD 196
+ + V + + VL +T + + V+Q + +A
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 197 TYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLEC 256
A + A + + A + A+ + G + L L
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553
Query: 257 FHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL------LEAVRNDALSQLHRE 310
+ + P + + V++ V + A+ ++ + E
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613
Query: 311 MKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEIN 360
+ + L + S+ L Q +
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Score = 44.6 bits (105), Expect = 5e-05
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 1/123 (0%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A + V++ + +A A + G A E + + A
Sbjct: 364 AIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRLLPVLCQAH 422
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + + L L + + P+ + + V+Q
Sbjct: 423 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482
Query: 288 SDV 290
V
Sbjct: 483 LPV 485
Score = 44.3 bits (104), Expect = 7e-05
Identities = 9/120 (7%), Positives = 26/120 (21%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
+ ++ + A + A E + + A
Sbjct: 160 KIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + + L L + + P + + V++
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRL 279
Score = 42.7 bits (100), Expect = 2e-04
Identities = 14/126 (11%), Positives = 33/126 (26%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
A + V++ + +A A + A E + + A
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAH 728
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A+ + G + L L + + P+ + + V++
Sbjct: 729 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRL 788
Query: 288 SDVNEN 293
V
Sbjct: 789 LPVLCQ 794
Score = 42.3 bits (99), Expect = 3e-04
Identities = 12/121 (9%), Positives = 30/121 (24%)
Query: 167 SAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA 226
S L+ + A ++ DT G + L
Sbjct: 125 GVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAP 184
Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
L+ + A+ + + L L + + P+ + + +++
Sbjct: 185 LNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR 244
Query: 287 A 287
Sbjct: 245 L 245
Score = 41.9 bits (98), Expect = 3e-04
Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 2/150 (1%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQ--GEVEQAEKMAEEACTADT 197
+ + V + + VL +T ++ Q V++ + +A
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTP 426
Query: 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
A + A E + + + A+ + + L L
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + P + + V++
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRL 516
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 54.6 bits (131), Expect = 3e-08
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 22/170 (12%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQG---------EVEQAEKM 188
+ + DV+ A + + NLS + V + +
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 189 AEEACTADTYNSAAFVNLGNCAMAR-----------EDYVKGKELYVHALDNDATCIEAL 237
A+ A D + ++ LGN ++ + + ++ +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 238 YNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
N HK+ Y ++LE F + A+ P+ PE + L E +
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311
Score = 49.6 bits (118), Expect = 1e-06
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 4/125 (3%)
Query: 178 LQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK-GKELYVHALDNDATCIEA 236
+Q E+E+ + EE + + A + G DY + L A+ + +EA
Sbjct: 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139
Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLL 296
LG + + + + CF + L ++ + ++
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH--VM 196
Query: 297 EAVRN 301
++VR
Sbjct: 197 DSVRQ 201
Score = 45.4 bits (107), Expect = 2e-05
Identities = 15/83 (18%), Positives = 25/83 (30%)
Query: 180 GEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYN 239
+ A AE+ + N +N E Y + E + A D E
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297
Query: 240 LGLAHKHLNEYSDSLECFHKLQA 262
+ L+ + LE K +
Sbjct: 298 EQQLLEFLSRLTSLLESKGKTKP 320
Score = 43.8 bits (103), Expect = 8e-05
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 211 MAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDS-LECFHKLQAIVPSMPE 269
+E+ K + L + +AL G A +YS K + P + E
Sbjct: 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Query: 270 VLYQIASLYEITGDVEQA 287
Q+ +Y GDV A
Sbjct: 139 AWNQLGEVYWKKGDVTSA 156
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 52.9 bits (128), Expect = 4e-08
Identities = 22/117 (18%), Positives = 42/117 (35%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+Y ++ ++A+ M E+A A N F LG + E A++ +
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
EA + G+ + ++L F + P + Y Y + E+A
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212
Score = 51.0 bits (123), Expect = 2e-07
Identities = 23/117 (19%), Positives = 48/117 (41%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
N + + E+E+A ++A D+ + A+ GN + +E Y + K+++ AL
Sbjct: 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ Y LG L + +L + + + E +Q G +++A
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178
Score = 51.0 bits (123), Expect = 2e-07
Identities = 20/135 (14%), Positives = 48/135 (35%)
Query: 153 QAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMA 212
+ ++ M S G+ E+A + +A + ++ ++N N +
Sbjct: 10 HSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS 69
Query: 213 REDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLY 272
+ + Y AL+ D++ A Y G + Y ++ + F K ++ Y
Sbjct: 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129
Query: 273 QIASLYEITGDVEQA 287
+ ++ + A
Sbjct: 130 MLGTVLVKLEQPKLA 144
Score = 44.0 bits (105), Expect = 4e-05
Identities = 18/113 (15%), Positives = 34/113 (30%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L + + + A + A + ++ A G C + + + D
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGD 283
+A YN G+ + + +LE K I P L+ L
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 38.7 bits (91), Expect = 0.002
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+G +++A D ++ AF N G +E+ K E+ A+D
Sbjct: 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223
Query: 231 ATCIEALYNLGLAHKHLNEY 250
+ AL+ L H + +
Sbjct: 224 PDHMLALHAKKLLGHHHHHH 243
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 53.4 bits (128), Expect = 5e-08
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
EEA A A+ +NL C + + + E AL+ D+ + L G AH +N+
Sbjct: 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASL 277
+ + F K+ + P+ Q+A
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVC 273
Score = 30.2 bits (68), Expect = 1.1
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 21/131 (16%)
Query: 207 GNCAMAREDYVKGKELYVHAL----------DNDATCIEALY-----NLGLAHKHLNEYS 251
G Y + Y + + +A +AL NL + H L +S
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213
Query: 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLE----AVRNDALSQ 306
++E +K + + + L + + D E A +D + L L A + L+
Sbjct: 214 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT-QLAV 272
Query: 307 LHREMKHEAEK 317
+ ++ + +
Sbjct: 273 CQQRIRRQLAR 283
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 53.5 bits (128), Expect = 6e-08
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 176 YFLQGEVEQAEKMAEEACT---------------ADTYNSAAFVNLGNCAMAREDYVKGK 220
YF G+ QA + + ++++ AAF+NL C + +Y K
Sbjct: 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337
Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
E AL D+ + LY G A +NE+ + F K+ + P QI+
Sbjct: 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394
Score = 30.8 bits (69), Expect = 0.82
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 21/131 (16%)
Query: 207 GNCAMAREDYVKGKELYVHAL----------DNDATCIEALY-----NLGLAHKHLNEYS 251
G Y++ Y + + ++ E+ NL + + L EY+
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Query: 252 DSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLE----AVRNDALSQ 306
++EC K + + + LY+ + + E A D + L + A R +S
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL-QISM 393
Query: 307 LHREMKHEAEK 317
++ K E+
Sbjct: 394 CQKKAKEHNER 404
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 50.5 bits (122), Expect = 1e-07
Identities = 21/117 (17%), Positives = 47/117 (40%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+ + G QA + E+ AD ++ ++LG + +G EL +L +
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
++ LGL + + +Y ++ K+ P V +++ + G ++A
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129
Score = 50.1 bits (121), Expect = 2e-07
Identities = 24/117 (20%), Positives = 47/117 (40%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+L Y G V++ ++ E + N LG + + Y L + + +
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ LG+A +L + ++++ F + P+ +V IA YE G E+A
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163
Score = 48.2 bits (116), Expect = 8e-07
Identities = 15/90 (16%), Positives = 27/90 (30%)
Query: 198 YNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECF 257
+ + G Y + L D DA ++ +LG+A+ E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 258 HKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ A P +V + Y + A
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLA 95
Score = 40.9 bits (97), Expect = 2e-04
Identities = 12/89 (13%), Positives = 30/89 (33%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L Y + + A + + A+ N LG + + + + AL
Sbjct: 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHK 259
+ + +++ + + ++L F K
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 51.4 bits (123), Expect = 2e-07
Identities = 26/185 (14%), Positives = 61/185 (32%), Gaps = 26/185 (14%)
Query: 127 NSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSF-----IYFLQGE 181
H + LE K + V++ ++ +++ + + S F Q E
Sbjct: 59 CFRHQLMLDYLEPGKT--YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116
Query: 182 VEQAEKMAEEA-----------CTADTYNSAAFV--NLGNCAMAREDYVKGKELYVHALD 228
+A EA A+ + A ++ ++ ++ ++Y +
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV------PSMPEVLYQIASLYEITG 282
I++L+ + + Y +L + + L IA+ Y+ +G
Sbjct: 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236
Query: 283 DVEQA 287
D + A
Sbjct: 237 DDQMA 241
Score = 48.3 bits (115), Expect = 3e-06
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 26/138 (18%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----------CTADTYNSAAFVNLGNCAMAREDYVKG 219
++ Y ++A E A A + N+ N D
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL-----NIANSYDRSGDDQMA 241
Query: 220 KELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQ- 273
E + A + L+ L + + + + + + Y+
Sbjct: 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301
Query: 274 ----IASLYEITGDVEQA 287
+ ++Y+ T D +
Sbjct: 302 LFLFLQAVYKETVDERKI 319
Score = 46.3 bits (110), Expect = 1e-05
Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 23/173 (13%)
Query: 139 INKAVTFLRMNDVSQAVDVLKSC---------DEMTSSAATNLSFIYFLQGEVEQAEKMA 189
A + +A+ L++ D + + N++ Y G+ + A +
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245
Query: 190 EEAC-----TADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD--------NDATCIEA 236
++A L K + LD
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASD 289
L + + D L F K + A+++E + EQA+
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNLH-AYIEACARSAAAVFESSCHFEQAAA 357
Score = 39.0 bits (91), Expect = 0.002
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-----CTADTYNSAAFVNLGNCAMAREDYVKGKEL--Y 223
LS+ G+ ++A + EE + + F+ L D K +L Y
Sbjct: 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325
Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
+ A + + + + + K
Sbjct: 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 50.3 bits (121), Expect = 2e-07
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 179 QGEVEQAEKMAEEACTADTY--NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEA 236
++ ++A TY A +N G C+ + + + +L A
Sbjct: 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149
Query: 237 LYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA-SLYEITGDVEQASD 289
L + D+ F K Q+ V + + + + G+ + A +
Sbjct: 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
L M +DY + AL +D A +++L + E F +
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 262 AIVPSMPEVLYQIAS-LYEITGDVEQA 287
+I P E+ L ++
Sbjct: 70 SIKPDSAEINNNYGWFLCGRLNRPAES 96
Score = 42.6 bits (101), Expect = 7e-05
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
T L+ Y + QA E+A +D N A++ + K +E + AL
Sbjct: 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71
Query: 230 DATCIEALYNLGLAHK-HLNEYSDSLECFHK--LQAIVPSMPEVLYQIASLYEITGDVEQ 286
E N G LN ++S+ F K P+ G
Sbjct: 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131
Query: 287 A 287
A
Sbjct: 132 A 132
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 51.5 bits (123), Expect = 3e-07
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 12/159 (7%)
Query: 168 AATNLSFIYFL---QGEVEQAEKMAEEACTADTYNSAAFVNLGN----CAMAREDYVKGK 220
+ L+ + + A +A + N V L E+ +G+
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
+L AL+ + L + ++ +E ++E K +P+ + QI Y
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR- 292
Query: 281 TGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCI 319
+ V L +L +K
Sbjct: 293 ----AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327
Score = 48.0 bits (114), Expect = 3e-06
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 19/159 (11%)
Query: 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228
A L + E + EK+ EEA + + +++ K EL AL+
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275
Query: 229 NDATCIEALYNLGLAHKH-------------------LNEYSDSLECFHKLQAIVPSMPE 269
+G ++ L ++ K ++
Sbjct: 276 YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335
Query: 270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLH 308
V +ASL+ + E+A + + + A LH
Sbjct: 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Score = 45.3 bits (107), Expect = 2e-05
Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 13/145 (8%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTA--------DTYNSAAFVNLGNC--AMAREDYVKGK 220
N +++Y+ G + + ++ + G + K
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158
Query: 221 ELYVHALDNDATCIEALYNLGLAHKHL---NEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
+ AL+ E L +A L ++++ + + P + +A
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218
Query: 278 YEITGDVEQASDVNENLLLEAVRND 302
+ + E L+ EA+
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKA 243
Score = 42.2 bits (99), Expect = 2e-04
Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 28/133 (21%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTAD-----------TYNSAAFVNLGNCAMAREDY 216
+ L+ ++ L + E+AE ++ + + Y + + A +
Sbjct: 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395
Query: 217 VKG-----------------KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
++G +++ L + EAL+ L + + + E +
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455
Query: 260 LQAIVPSMPEVLY 272
+P
Sbjct: 456 GLESGSLIPSASS 468
Score = 31.1 bits (70), Expect = 0.75
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 166 SSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN 208
S A L+F+ L +++QA++ +E + + +A G
Sbjct: 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
Score = 29.9 bits (67), Expect = 1.5
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
++ +K+A+ + + +S A L E + E L++ + A G
Sbjct: 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/92 (16%), Positives = 33/92 (35%)
Query: 186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
+ + A + +N+ C + + Y + L + +AL+ G A
Sbjct: 216 QLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA 275
Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
L + + + F K Q P + ++ +L
Sbjct: 276 ELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 50.1 bits (119), Expect = 5e-07
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 6/147 (4%)
Query: 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC-----DEMTSSAATNLSFIYFLQGEVEQ 184
H + + L+++ + A LK D + AT + +++
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 185 AEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAH 244
A + +E + C MA+ + + + ALD D+ E L NL +
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244
Query: 245 KHLNEYSDSL-ECFHKLQAIVPSMPEV 270
+HL + + +L+ S P +
Sbjct: 245 QHLGKPPEVTNRYLSQLKDAHRSHPFI 271
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 47.4 bits (114), Expect = 6e-07
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
NL Y+ QG+ ++A + ++A D ++ A+ NLGN + DY + E Y AL+ D
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
EA YNLG A+ +Y +++E + K + P E Y + + Y GD ++A
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Score = 40.8 bits (97), Expect = 1e-04
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
NL Y+ QG+ ++A + ++A D ++ A+ NLGN + DY + E Y AL+ D
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265
EA YNLG A+ +Y +++E + K + P
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 40.4 bits (96), Expect = 1e-04
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
A+ + NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++
Sbjct: 1 AEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 55
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
E + K + P E Y + + Y GD ++A
Sbjct: 56 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 47.8 bits (114), Expect = 7e-07
Identities = 17/97 (17%), Positives = 34/97 (35%)
Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
+ L + + + E D N + N+ C + D + +E L + T
Sbjct: 38 LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE 97
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
+AL+ A + ++ E L P+ V+
Sbjct: 98 KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 48.2 bits (115), Expect = 8e-07
Identities = 17/88 (19%), Positives = 34/88 (38%)
Query: 190 EEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
+ +NL C +DY K + L D ++ALY LG+A+ +
Sbjct: 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 250 YSDSLECFHKLQAIVPSMPEVLYQIASL 277
++ E +K ++ P+ ++
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELC 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 47.9 bits (114), Expect = 9e-07
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 3/112 (2%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYV---KGKELYVHAL 227
L Y Q + + +A N+ + L + + + + AL
Sbjct: 49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
D+ I AL L Y+ ++E + K+ + + S+
Sbjct: 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160
Score = 46.4 bits (110), Expect = 3e-06
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 3/112 (2%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
Q E + ++ A+ NS + LG + + DY Y AL E
Sbjct: 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82
Query: 239 NLGLAHKHLNEYSDS---LECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
L + + K A+ + L +AS + + QA
Sbjct: 83 ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 48.3 bits (116), Expect = 1e-06
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 5/122 (4%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHA- 226
+G +EQA + ++A + + + G + K + A
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 227 -LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVE 285
L++ E L + + ++L + K P ++ + AS + G E
Sbjct: 146 ALEDTP---EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202
Query: 286 QA 287
+A
Sbjct: 203 EA 204
Score = 44.4 bits (106), Expect = 2e-05
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 12/128 (9%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGN------CAMAREDYVKGK---- 220
L+ G V A + + ++ L + KG
Sbjct: 44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103
Query: 221 -ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
+ A + GL + L E + + A+ + PE+ +A LY
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYL 162
Query: 280 ITGDVEQA 287
G +++A
Sbjct: 163 SMGRLDEA 170
Score = 43.3 bits (103), Expect = 5e-05
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 2/109 (1%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
+ LG A Y L+ AL + EALY L L + +LE
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVR--NDALS 305
L A P ++ Y + + + L +A+ DA
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112
Score = 39.4 bits (93), Expect = 0.001
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
+Y L GE ++AE ++A + L ++ + Y AL+
Sbjct: 123 QRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQA 181
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECF 257
++ A + ++
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAARAA 208
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 11/131 (8%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
L + G + A + E A + + A L + E +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 228 DNDATCIEALYNLGLAHKHL-----------NEYSDSLECFHKLQAIVPSMPEVLYQIAS 276
+ L A+ L +L + + P + Q
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 277 LYEITGDVEQA 287
+Y + G+ ++A
Sbjct: 127 VYALLGERDKA 137
Score = 27.1 bits (61), Expect = 8.8
Identities = 6/60 (10%), Positives = 18/60 (30%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L+ +Y G +++A +A + V + + + + +
Sbjct: 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 48.3 bits (116), Expect = 2e-06
Identities = 27/199 (13%), Positives = 57/199 (28%), Gaps = 47/199 (23%)
Query: 130 HSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM-----------TSSAATNLSFIYFL 178
H +A L A+ + N A ++L + ++ NL+ +Y
Sbjct: 65 HPDVATMLN-ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 179 QGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
+G+ ++AE + + A A N NL + Y + + Y
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN-----NLALLCQNQGKYEEVEYYYQR 178
Query: 226 AL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV---------PSMP 268
AL +D + NL + ++ + + ++
Sbjct: 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238
Query: 269 EVLYQIASLYEITGDVEQA 287
+ E G +
Sbjct: 239 PIWMHAEEREECKGKQKDG 257
Score = 44.1 bits (105), Expect = 4e-05
Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 34/152 (22%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAM 211
NL Y QG E A + ++A A N L
Sbjct: 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN-----ILALVYR 80
Query: 212 AREDYVKGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
+ Y L AL + L NL + + +Y ++ + I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 264 V--------PSMPEVLYQIASLYEITGDVEQA 287
P + + L +A L + G E+
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172
Score = 43.7 bits (104), Expect = 6e-05
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 25/113 (22%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA--------------CTADTYNSAAFVNLGNCAMAREDY 216
NL+ Y QG+ +QAE + +E + + +
Sbjct: 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-----HAEEREECKGKQ 254
Query: 217 VKGKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
G + + T L NLG ++ ++ +
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
Score = 33.3 bits (77), Expect = 0.14
Identities = 8/75 (10%), Positives = 16/75 (21%), Gaps = 16/75 (21%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEAC-----------TADTYNSAAFVNLGNCAMAR 213
+ +G+ + E T NLG +
Sbjct: 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK-----NLGALYRRQ 291
Query: 214 EDYVKGKELYVHALD 228
+ + L A+
Sbjct: 292 GKFEAAETLEEAAMR 306
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 46.1 bits (110), Expect = 2e-06
Identities = 17/104 (16%), Positives = 33/104 (31%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
E A +A + N+ F N +Y + A+ D +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
A +GLA LN++ +++ + K + P +
Sbjct: 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Score = 38.7 bits (91), Expect = 7e-04
Identities = 14/92 (15%), Positives = 32/92 (34%)
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLE 255
D+ + GN M E++ Y A++ + N A+ L Y+ +++
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 256 CFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ I P+ + ++ +A
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99
Score = 35.3 bits (82), Expect = 0.009
Identities = 20/80 (25%), Positives = 29/80 (36%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
N + Y G A + E A D S A+ +G + +V+ Y AL+
Sbjct: 50 CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
Query: 230 DATCIEALYNLGLAHKHLNE 249
D NL +A L E
Sbjct: 110 DPDNETYKSNLKIAELKLRE 129
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 48.1 bits (115), Expect = 2e-06
Identities = 22/179 (12%), Positives = 49/179 (27%), Gaps = 12/179 (6%)
Query: 169 ATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD 228
A L + + + E++ D + G + + + AL
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQAS 288
E LG+ + + E F + + P+ G + A
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA- 130
Query: 289 DVNENLLLEAVR---NDALSQLHR-----EMKHEAEKCILTSAKLIAPSIEDNFSNGYN 339
++ LL + ND L ++ + K +L + + ++
Sbjct: 131 ---QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/123 (12%), Positives = 28/123 (22%), Gaps = 4/123 (3%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA---AFVNLGNCAMAREDYVKGKELYV 224
+ L E + E + + +D LGN + + K
Sbjct: 147 RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADAT 205
Query: 225 HALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDV 284
E + LG + L + + F A + G
Sbjct: 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
Query: 285 EQA 287
+
Sbjct: 266 QDD 268
Score = 36.5 bits (85), Expect = 0.011
Identities = 14/81 (17%), Positives = 27/81 (33%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
Q +E+ + A + + + S LG ++ D L+ A+ N+
Sbjct: 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253
Query: 239 NLGLAHKHLNEYSDSLECFHK 259
L L + D L +
Sbjct: 254 YALLELSLLGQDQDDLAESDQ 274
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 47.9 bits (115), Expect = 2e-06
Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 39/174 (22%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAM 211
++ NL+ +Y +G+ ++AE + + A A N NL
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN-----NLALLCQ 138
Query: 212 AREDYVKGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHK-LQA 262
+ + + Y AL +D + NL + +Y D+ + + L
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 263 IV--------PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLH 308
+ E + A
Sbjct: 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS----APYGEYGSWYKACKVDS 248
Score = 47.1 bits (113), Expect = 4e-06
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 34/152 (22%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEAC-------------TADTYNSAAFVNLGNCAM 211
++ L+ +Y Q + ++A + +A A T N NL
Sbjct: 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN-----NLAVLYG 96
Query: 212 AREDYVKGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
R Y + + L AL + L NL L ++ + + + + I
Sbjct: 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156
Query: 264 V--------PSMPEVLYQIASLYEITGDVEQA 287
P++ + +AS Y G + A
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Score = 44.1 bits (105), Expect = 4e-05
Identities = 12/113 (10%), Positives = 29/113 (25%), Gaps = 25/113 (22%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA--------------CTADTYNSAAFVNLGNCAMAREDY 216
NL+ Y QG+ + AE + +E + + +++
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM-----HAEEREESKDKR 228
Query: 217 VKGKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
+ + T L +LG ++ + +
Sbjct: 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
Score = 37.9 bits (89), Expect = 0.004
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 34/146 (23%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEA-------------CTADTYNSAAFVNLGNCAMAREDYV 217
+ A + ++A A N L + Y
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLN-----ILALVYRDQNKYK 60
Query: 218 KGKELYVHAL--------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV----- 264
+ L AL + L NL + + +Y ++ + I
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120
Query: 265 PSMPEVLYQ---IASLYEITGDVEQA 287
P+V Q +A L + G E+
Sbjct: 121 KFHPDVAKQLNNLALLCQNQGKAEEV 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 43.5 bits (103), Expect = 1e-05
Identities = 13/91 (14%), Positives = 33/91 (36%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
F+ + +A A T + + + N C + + + AL+ D ++
Sbjct: 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
A + LG + Y +++ + ++
Sbjct: 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
Score = 28.0 bits (63), Expect = 3.1
Identities = 15/61 (24%), Positives = 20/61 (32%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
TN + Y + EQA A D + A LG C + E Y + A
Sbjct: 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Query: 230 D 230
Sbjct: 107 A 107
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 43.0 bits (102), Expect = 2e-05
Identities = 14/91 (15%), Positives = 28/91 (30%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
YF + + A K E ++ + N + + A++ D +
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
A A + EY+ +LE +
Sbjct: 74 AYIRKATAQIAVKEYASALETLDAARTKDAE 104
Score = 26.5 bits (59), Expect = 8.7
Identities = 11/74 (14%), Positives = 21/74 (28%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
+N + +A +A D A++ +A ++Y E A
Sbjct: 42 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101
Query: 230 DATCIEALYNLGLA 243
DA +
Sbjct: 102 DAEVNNGSSAREID 115
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 45.0 bits (106), Expect = 3e-05
Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 19/166 (11%)
Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEA-----CTADTYNSAAFVNLGNCAMAREDY 216
D M + + + G ++AE++A+ A A LG + +
Sbjct: 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 69
Query: 217 VKGKELYVHAL------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV------ 264
+ L D + +L + E K ++
Sbjct: 70 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129
Query: 265 --PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLH 308
P ++ A L +++A + + QL
Sbjct: 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175
Score = 40.0 bits (93), Expect = 0.001
Identities = 23/197 (11%), Positives = 47/197 (23%), Gaps = 29/197 (14%)
Query: 129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVL--------KSCDEMTSSAATNLSFIYFLQG 180
+ + L +A + +A + L +G
Sbjct: 129 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188
Query: 181 EVEQAEKMAEEA-------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233
+++ A + S A D H +
Sbjct: 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248
Query: 234 IE----ALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPEVLYQIASLYEITGD 283
N+ A L E+ + +L + + L + LY G
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 284 VEQASDVNENLLLEAVR 300
A + +LL+A++
Sbjct: 309 KSDA----QRVLLDALK 321
Score = 36.9 bits (85), Expect = 0.010
Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 30/182 (16%)
Query: 165 TSSAATNLSFIYFLQGEVEQAEKMAEEACT--------ADTYNSAAFVNLGNCAMAREDY 216
+ S I F QG ++ A + E+A + A
Sbjct: 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151
Query: 217 VKGKELYVHALD-----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
+ + ++ ++ L L + ++ ++L+ ++ +
Sbjct: 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211
Query: 272 YQIAS-------LYEITGDVEQA----------SDVNENLLLEAVRNDALSQLHREMKHE 314
I++ +++TGD A N + L RN A +Q+
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 315 AE 316
AE
Sbjct: 272 AE 273
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 43.2 bits (102), Expect = 3e-05
Identities = 18/91 (19%), Positives = 30/91 (32%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
+ E +A + +A + N N A + K E A D +
Sbjct: 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
A LGLA + +Y + E + K +
Sbjct: 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 35.1 bits (81), Expect = 0.016
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
A T S + GN AMAR++Y K +LY AL L N A+ ++ +
Sbjct: 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
E + P + ++ D + A
Sbjct: 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGA 98
Score = 30.5 bits (69), Expect = 0.52
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
+N + Y G+ E+A + AE A D S A+ LG DY KE Y ++
Sbjct: 49 SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108
Query: 230 DATCIEALYNLGL--AHKHLNEYSDSLE 255
+ GL + + E + E
Sbjct: 109 EGNGGSDAMKRGLETTKRKIEEANRGAE 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 43.8 bits (103), Expect = 5e-05
Identities = 13/91 (14%), Positives = 33/91 (36%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
F+ + +A A T + + + N C + + + AL+ D ++
Sbjct: 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
A + LG + Y +++ + ++
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
Score = 30.3 bits (68), Expect = 1.1
Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 1/114 (0%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
GN Y + Y A+ + N L + + + +L + +
Sbjct: 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68
Query: 265 PSMPEVLYQIASLYEITGDVEQA-SDVNENLLLEAVRNDALSQLHREMKHEAEK 317
+ + + ++A +++ L + A+K
Sbjct: 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 41.8 bits (99), Expect = 6e-05
Identities = 16/95 (16%), Positives = 37/95 (38%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
F +G+ QA K EA + ++ + N C ++ + + + T I+
Sbjct: 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270
A + + +Y+ +++ + K + S E
Sbjct: 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 28.4 bits (64), Expect = 2.0
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
+N + Y E + A K EE + + A +DY K ++Y ALD
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Query: 230 DATCIEALYNLGLAHK 245
D++C EA
Sbjct: 114 DSSCKEAADGYQRCMM 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 41.6 bits (99), Expect = 6e-05
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
NL Y+ QG+ ++A + ++A D N+ A+ NLGN + DY + E Y AL+ D
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
EA YNLG A+ +Y +++E + K A+
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQK--AL 104
Score = 39.7 bits (94), Expect = 3e-04
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
A+ + NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++
Sbjct: 9 AEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
E + K + P+ E Y + + Y GD ++A
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 30.4 bits (70), Expect = 0.42
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
NL Y+ QG+ ++A + ++A D N+ A+ NLGN + DY + E Y AL+ D
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Query: 231 ATCIEALYNLGLAHKHL 247
EA NLG A +
Sbjct: 108 PNNAEAKQNLGNAKQKQ 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 41.5 bits (98), Expect = 7e-05
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
A +LGN A ++D+ K Y A++ D + I N + ++++ +
Sbjct: 8 AIAEK-----DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62
Query: 255 ECFHKLQAIVPSMPEVLYQIASLY 278
+ K + IA
Sbjct: 63 QFCEKAVEVGRETRADYKLIAKAM 86
Score = 41.1 bits (97), Expect = 1e-04
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 195 ADTYN--SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSD 252
YN +A + A + K E+ + +A+ G A + N+ S
Sbjct: 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL 101
Query: 253 SLECFHKLQAIVPS 266
+++ FH+ +
Sbjct: 102 AVQWFHRSLSEFRD 115
Score = 29.6 bits (67), Expect = 0.76
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEA------CTADTYNSA-AFVNLGNCAMAREDYVKGKEL 222
N + +YF + + + + E+A AD A A GN + D +
Sbjct: 46 NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
Query: 223 YVHALDNDAT 232
+ +L
Sbjct: 106 FHRSLSEFRD 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 41.0 bits (97), Expect = 8e-05
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALD 228
G ++ A + EA D +N SAA+ G+ A ED K +L
Sbjct: 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------ 67
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
+ A + LN + ++ + + + P++ + ++
Sbjct: 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 34.9 bits (81), Expect = 0.010
Identities = 21/113 (18%), Positives = 37/113 (32%)
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
GN A++ + + Y A+ D N A+ +Y + E K
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 260 LQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMK 312
+ P + + A+ E E+A E L N L + + M+
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/75 (13%), Positives = 22/75 (29%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
N S Y +G+ ++A + + + + + K Y L ++
Sbjct: 43 NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102
Query: 231 ATCIEALYNLGLAHK 245
A + L
Sbjct: 103 ANNPQLKEGLQNMEA 117
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 40.8 bits (96), Expect = 1e-04
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 12/128 (9%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHK----- 259
LGN A ++D+ + Y A + D T + + N + +Y+ E K
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 260 --LQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEK 317
+ + + +I + Y + A L E D L + +AEK
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC-----QQAEK 123
Query: 318 CILTSAKL 325
+ +L
Sbjct: 124 ILKEQERL 131
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALD 228
+ + + + A K ++A D N +A + G+ RE K E+ +
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
+ +A +G ++ +Y D++ ++K A +
Sbjct: 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 33.8 bits (78), Expect = 0.027
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSA-------AFVNLGNCAMAREDYVKGKEL 222
TN + +YF +G+ + ++ E+A N A+ +GN E Y
Sbjct: 42 TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 101
Query: 223 YVHALDNDATCIEALYNLGLAHKHLNE 249
Y +L T + L A K L E
Sbjct: 102 YNKSLAEHRTP-DVLKKCQQAEKILKE 127
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262
+N+G C + D+ + + AL+ D + +ALY + L EY +L K Q
Sbjct: 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 263 IVPSMPEVLYQIASL 277
I P + ++ +
Sbjct: 336 IAPEDKAIQAELLKV 350
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 41.6 bits (97), Expect = 3e-04
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 7/139 (5%)
Query: 134 AQDLEINKAVTFLRMNDVSQAVDVLKSCDEM--TSSAATNLSFIYFLQGEVEQAEKMAEE 191
+ + A + + A++ L++ A + +Y +
Sbjct: 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKS 160
Query: 192 ACTAD--TYNSAAFVNLGNCAMAREDYVKGKELYVHALDND---ATCIEALYNLGLAHKH 246
A AA V G A + + + A D+ A + L +A +
Sbjct: 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220
Query: 247 LNEYSDSLECFHKLQAIVP 265
S ++ LQ P
Sbjct: 221 QGNESAAVALLEWLQTTHP 239
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 38.8 bits (91), Expect = 3e-04
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
D Y L H + S +L F +L P Y + LYE + A
Sbjct: 5 EDP---FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
Score = 37.2 bits (87), Expect = 0.001
Identities = 8/71 (11%), Positives = 27/71 (38%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
+ L + ++ + L+ ++ D + Y+LG ++ L+ D+++ +
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 259 KLQAIVPSMPE 269
+ +
Sbjct: 66 QGIEVAREEGT 76
Score = 34.9 bits (81), Expect = 0.008
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNC-------AMAREDYVKGKELY 223
L+ + +A + EE D + +LG A + Y +G E+
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71
Query: 224 -----VHALDNDATCIEALYNLGLAHKH 246
L L H H
Sbjct: 72 REEGTQKDLSELQDAKLKAEGLEHHHHH 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 40.9 bits (96), Expect = 4e-04
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 10/128 (7%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
+ A + +A N + L +A + + D + Y
Sbjct: 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DTRY 186
Query: 239 NLGLAHKHLNEYSDSLECFHKLQAIVPSMP---EVLYQIASLYEITGDVEQASDVNENLL 295
+A L + +LQ V P + Q+A G E+A + LL
Sbjct: 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE----LL 242
Query: 296 LEAVRNDA 303
+R D
Sbjct: 243 FGHLRXDL 250
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 38.6 bits (91), Expect = 4e-04
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
N + G +Y + +L+ A+ D + G A +L Y ++++C++
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 259 KLQAIVP--SMPEVLYQIASLYEITGDVEQA 287
+ ++ +V A E
Sbjct: 65 YVINVIEDEYNKDVWAAKADALRYIEGKEVE 95
Score = 37.8 bits (89), Expect = 9e-04
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD-- 228
+ + G ++ + E+A D S ++ G E Y + + Y + ++
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
D + A +++ E
Sbjct: 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEA 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 38.7 bits (91), Expect = 5e-04
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYN-------SAAFVNLGNCAMAREDYVKGKELYVHALD 228
YF +G+ A + EA D N +A L A +D +
Sbjct: 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT-------CIR 75
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270
D+ I+ + E+S + + + PS E
Sbjct: 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Score = 27.2 bits (61), Expect = 4.8
Identities = 13/76 (17%), Positives = 28/76 (36%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDN 229
+N + E ++A + D+ ++ C +A ++ K + Y AL
Sbjct: 51 SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110
Query: 230 DATCIEALYNLGLAHK 245
D + EA + +
Sbjct: 111 DPSNEEAREGVRNCLR 126
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 40.9 bits (96), Expect = 6e-04
Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 11/166 (6%)
Query: 149 NDVSQAVDVLKSCDEMTSSAATNLSFIYFL-QGEVEQAEKMAEEACT--ADTYNSAAFVN 205
+ QA ++ + + A L + G E AE +
Sbjct: 52 AQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIP 111
Query: 206 LGNCAM----AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKL- 260
L + + + +++ EA L ++ Y L+ ++
Sbjct: 112 LAMLYLQYPHSFPNVNAQQQISQWQAAGYP---EAGLAQVLLYRTQGTYDQHLDDVERIC 168
Query: 261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQ 306
+A + + ++A++Y+ EQ +++ + + R +Q
Sbjct: 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214
Score = 32.4 bits (74), Expect = 0.30
Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 10/107 (9%)
Query: 159 KSCDEMTSSAATNLSFIYFLQGEVEQA-------EKMAEEACTADTYNSAAFVNLGNCAM 211
K+ T L+ +Y + + EQ E + LG+ +
Sbjct: 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL 228
Query: 212 AREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
D + L + +L E D +
Sbjct: 229 GTPDEKTAQALLEKIAPGYP---ASWVSLAQLLYDFPELGDVEQMMK 272
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 40.8 bits (95), Expect = 7e-04
Identities = 14/120 (11%), Positives = 32/120 (26%)
Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
+ LQ ++ + N + + D + E L+ DA
Sbjct: 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294
A + + + + L+ +L V Q + T + + +
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 38.9 bits (91), Expect = 0.001
Identities = 17/91 (18%), Positives = 34/91 (37%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
YF + E A K +A + N+ + N + E Y A++ D I+
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
Y ++ L ++ +L + + + P
Sbjct: 83 GYYRRAASNMALGKFRAALRDYETVVKVKPH 113
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
E L + + LG + ++ +L P+ + +
Sbjct: 6 ERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG 65
Query: 281 TGDVEQASDVNENLLLEAVRNDALSQLHREM 311
GD A E+ L A ++ Q+ +E+
Sbjct: 66 QGDRAGARQAWES-GLAAAQSRGDQQVVKEL 95
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 2/90 (2%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL--D 228
L Y + + A A D S A+ LG + D ++ + L
Sbjct: 24 TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83
Query: 229 NDATCIEALYNLGLAHKHLNEYSDSLECFH 258
+ + L + + L H
Sbjct: 84 QSRGDQQVVKELQVFLRRLAREDALEHHHH 113
Score = 36.2 bits (84), Expect = 0.004
Identities = 16/85 (18%), Positives = 26/85 (30%)
Query: 182 VEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG 241
++ + E T N LG E + ALD D T A LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 242 LAHKHLNEYSDSLECFHKLQAIVPS 266
+ + + + + + A S
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQS 85
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 176 YFLQGEVEQAEKM---AEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDAT 232
F G+ A A + N C + EDY K + A++ D
Sbjct: 38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97
Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASL 277
++ALY A + L ++ + ++ P + ++
Sbjct: 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 36.9 bits (85), Expect = 0.008
Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 38/231 (16%)
Query: 182 VEQAEKMAEEACT---------ADTYNSAA--FVNLGNCAMAREDYVKGKELYVHALD-- 228
+++AEK + + + AA V R++ + ++ A D
Sbjct: 8 LKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQ 67
Query: 229 ----NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------EVLYQIASLY 278
N+ K ++++ I +++ +
Sbjct: 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127
Query: 279 EI-TGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNG 337
E D +A D E ++ + + KC + A L A ++ +
Sbjct: 128 ENDLHDYAKAIDCYELAGEWYAQDQS--------VALSNKCFIKCADLKA--LDGQYIEA 177
Query: 338 YNWCVQSIRNSAHSSL----AQDLEINKAVTFLRMNDVSQAVDVLKSCDEM 384
+ + I++S + L +D + K + L D A L+
Sbjct: 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 37.4 bits (87), Expect = 0.008
Identities = 14/93 (15%), Positives = 28/93 (30%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
+ N +DY + Y A++ + + N LA+ Y +L
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
+ + + Y+ A+ G A
Sbjct: 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93
Score = 34.3 bits (79), Expect = 0.077
Identities = 17/91 (18%), Positives = 34/91 (37%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
YF + E A K +A + N+ + N + E Y A++ D I+
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 236 ALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
Y ++ L ++ +L + + + P
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKPH 106
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 34.3 bits (80), Expect = 0.009
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 195 ADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
A+ + NLGN + DY + E Y AL+ D EA YNLG A+ +Y +++
Sbjct: 9 AEAWY-----NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 255 ECFHKLQAI 263
E + K A+
Sbjct: 64 EYYQK--AL 70
Score = 33.1 bits (77), Expect = 0.027
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
EA YNLG A+ +Y +++E + K + P+ E Y + + Y GD ++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Score = 31.2 bits (72), Expect = 0.12
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACT-----ADTYNSAAFVNLGNCAMAREDYVKGKELYVH 225
NL Y+ QG+ ++A + ++A A+ + NLGN + DY + E Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY-----NLGNAYYKQGDYDEAIEYYQK 68
Query: 226 ALDNDATCIEALYNLGLAHKHL 247
AL+ D EA NLG A +
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQ 90
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 34.3 bits (79), Expect = 0.011
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDAT-CIEALYNLGLAHKHLNEYSDSLECFHKLQAI 263
+ + D + L + EA Y +G A++ L ++ +L + +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 264 VPSMPEVLYQ 273
P P + +
Sbjct: 65 NPDSPALQAR 74
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 36.4 bits (84), Expect = 0.013
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 183 EQAEKMAEEACTADT--YNSAA--FVNLGNCAMAREDYVKGKELYVHALD------NDAT 232
+AEK + + Y+SAA + + + K+ Y+ + +
Sbjct: 15 AKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH 74
Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMP------EVLYQIASLYEITGDVEQ 286
+A G+ K L ++++ K + L + L E D+ +
Sbjct: 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-PLDLSK 133
Query: 287 A 287
A
Sbjct: 134 A 134
Score = 35.6 bits (82), Expect = 0.023
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 133 LAQDLEINKAVTFLRMNDVSQAVDVLKSCDEMTSSAAT--NLSFIYFLQGEVEQAEKMAE 190
L + L+++KAV + QA V ++ + + +A S + Q + ++A +
Sbjct: 125 LMEPLDLSKAVHLYQ-----QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ 179
Query: 191 EACTA-----DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATC----IEALYNL 240
+ + + + + R DYV ++ + AL +L
Sbjct: 180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDL 239
Query: 241 GLAHKHLNE 249
A+ +E
Sbjct: 240 LQAYDEQDE 248
Score = 33.3 bits (76), Expect = 0.12
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 19/139 (13%)
Query: 175 IYFLQGEVEQAEKMAEEACTA-----DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALD 228
+ ++EQA+ + A +++A AF G + + + A
Sbjct: 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104
Query: 229 ------NDATCIEALYNLGLAHKHLNE------YSDSLECFHKLQAIVPSMPEVLYQIAS 276
T AL G + L+ Y + F + + E++ + +
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEER-LRQAAELIGKASR 163
Query: 277 LYEITGDVEQASDVNENLL 295
L ++A+ +
Sbjct: 164 LLVRQQKFDEAAASLQKEK 182
Score = 29.5 bits (66), Expect = 2.1
Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 14/152 (9%)
Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE------VLYQIASLYEITGDVEQA 287
+A K+ + + + + + + Q + + + +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 288 SDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRN 347
E + V N A + + KL+ P + Y N
Sbjct: 96 VQYIEKASVMYVENGTPDT--------AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFEN 147
Query: 348 SAHSSLAQDLEINKAVTFLRMNDVSQAVDVLK 379
A +L + +R +A L+
Sbjct: 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQ 179
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 32.7 bits (75), Expect = 0.057
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 176 YFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIE 235
F QG +A ++ TA N + N + +Y + ++ L +T
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 236 AL------YNLGLAHKHLNEYSDSLECFHKL 260
Y L LA + + +L
Sbjct: 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104
Score = 30.4 bits (69), Expect = 0.38
Identities = 11/74 (14%), Positives = 22/74 (29%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
GN + Y + Y + N +A L EY+ +++ +
Sbjct: 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68
Query: 265 PSMPEVLYQIASLY 278
+ V + Y
Sbjct: 69 STAEHVAIRSKLQY 82
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.0 bits (77), Expect = 0.067
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 13/111 (11%)
Query: 162 DEMTSSAATNLSFIYFLQGEVEQAEKMAEEAC-------TADTYNSAAFVNLGNCAMARE 214
++ IY G +++ + E+ + ++ N
Sbjct: 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210
Query: 215 DYVKGKELYVHALD------NDATCIEALYNLGLAHKHLNEYSDSLECFHK 259
Y + A++ + A + Y G + L +E +K
Sbjct: 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
Score = 34.0 bits (77), Expect = 0.081
Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 30/169 (17%)
Query: 175 IYFLQGEVEQAEKMAEEA------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL- 227
+ + E ++ N + N KG +L+ L
Sbjct: 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183
Query: 228 ------DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAI------VPSMPEVLYQIA 275
DN+ ++ YN A + Y +SL +K I + + ++ YQ
Sbjct: 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243
Query: 276 SLYEITGDVEQA-----------SDVNENLLLEAVRNDALSQLHREMKH 313
E D+ E + + +S+L H
Sbjct: 244 ECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHHH 292
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 32.8 bits (74), Expect = 0.22
Identities = 10/104 (9%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 129 AHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSCDEM-----TSSAATNLSFIYFLQGEVE 183
A + A + + L ++ + + + S + ++G+ +
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294
Query: 184 QAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
++ + + + +V LG + + + Y+ A
Sbjct: 295 ESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAF 337
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 31.7 bits (72), Expect = 0.22
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 213 REDYVKGKELYVHALDNDATCI--EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270
+D KG L L + + ++ L + + L EY +L+ L P +
Sbjct: 48 NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107
Query: 271 L 271
Sbjct: 108 K 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.58
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 26/53 (49%)
Query: 92 KHEAEKCILTSA-KLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAV 143
K +K L ++ KL A +SA +LA I +
Sbjct: 19 KQALKK--LQASLKLYAD------------------DSA-PALA----IKATM 46
Score = 30.3 bits (67), Expect = 0.58
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 26/53 (49%)
Query: 312 KHEAEKCILTSA-KLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAV 363
K +K L ++ KL A +SA +LA I +
Sbjct: 19 KQALKK--LQASLKLYAD------------------DSA-PALA----IKATM 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 31.2 bits (71), Expect = 0.74
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 142 AVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSA 201
L+ + A++ + ++ S L ++ E +A++A T +N
Sbjct: 688 GDASLQRFNFKLAIEAFTNAHDLES-----LFLLHSSFNNKEGLVTLAKDAETTGKFNL- 741
Query: 202 AFVNL 206
AF
Sbjct: 742 AFNAY 746
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 30.6 bits (70), Expect = 0.80
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 188 MAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALD-NDATCIEALYNLGLAHKH 246
MAE+ + V LG + +D+ + K+ + A D + +NLG+ +
Sbjct: 1 MAEQ-------DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN---SGCFNLGVLYYQ 50
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
H++DN + ALY LG L H N ++DS
Sbjct: 126 HSIDNSLATLRALYALGVRYMTLTHNDNNAWADS 159
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 30.2 bits (68), Expect = 1.2
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
+ D + +E Y G H N+ +DS
Sbjct: 162 WPVGEDLSLVETFYKEGLRMAGPVHFRNNQLADS 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 29.5 bits (65), Expect = 1.3
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHAL----DNDATCIEALYNLGLAHKHLNEYSDSLE 255
+ A L + A K + D I A+Y+ LA L ++++
Sbjct: 64 AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123
Query: 256 CFHKLQAIVPS 266
F K+ ++
Sbjct: 124 EFKKVVEMIEE 134
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.4
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 15/59 (25%)
Query: 1 MERPEEKFERMEQEIIGL----IDESCICARNQDFKAALEKAKLASNKERVLIKLQEQF 55
++ + + MEQE ++E NQ +EK K +N+ + F
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEE-----WNQRQSEQVEKNK-INNRIA-----DKAF 145
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 30.2 bits (68), Expect = 1.5
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
+ L +D + ++ G ++ N+++DS
Sbjct: 141 YPLGDDLSQLDKWAARGVRMFGFSYVGNNDWADS 174
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 30.1 bits (68), Expect = 1.5
Identities = 4/34 (11%), Positives = 9/34 (26%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
A+ D + ++LG +
Sbjct: 142 EAIGADLDALHLFHSLGLRSLGPVWSRPTVFGHG 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 28.6 bits (63), Expect = 2.2
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 21/107 (19%)
Query: 183 EQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKEL----------YVHALDNDAT 232
EQ + AE ++ ++ G + + + + AL D
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 233 CIEALYNLGLAHKHL-----------NEYSDSLECFHKLQAIVPSMP 268
EA++ +G A+ + + + + F + P
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 28.1 bits (63), Expect = 2.3
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 196 DTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI---EALYNLGLAHKHLNEYSD 252
Y A LG A ++ + + + T L LGL+ + ++
Sbjct: 35 GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94
Query: 253 SLECFHKLQAIVPSMPEVLYQIASLYEI 280
+ + ++ P L I
Sbjct: 95 AQQTLQQVATQYPGSDAARVAQERLQSI 122
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 29.6 bits (65), Expect = 2.6
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 233 CIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQA 287
C L +LG ++ N+ S + + +VPS + Q+A L GD
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
H++D+ + ALY LG L H ++D+
Sbjct: 128 HSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADN 161
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 27.9 bits (62), Expect = 3.1
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 213 REDYVKGKELYVHALDNDATCI--EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEV 270
+D KG L L + + ++ L + + L EY +L+ L P +
Sbjct: 51 NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110
Query: 271 L 271
Sbjct: 111 K 111
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max}
SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A*
1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A*
2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A
1btc_A*
Length = 495
Score = 28.9 bits (64), Expect = 3.4
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 116 NGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDV 151
YN + + R ++ VT+LR++D
Sbjct: 389 TAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
Score = 28.9 bits (64), Expect = 3.4
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 336 NGYNWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDV 371
YN + + R ++ VT+LR++D
Sbjct: 389 TAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDD 424
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 28.8 bits (65), Expect = 4.0
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
+ D + L + G L + N +D
Sbjct: 110 EPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADG 143
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 27.1 bits (60), Expect = 6.3
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
E LY L + L EYS + L + +V
Sbjct: 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 28.0 bits (62), Expect = 7.6
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 18/112 (16%)
Query: 2 ERPEEKFERMEQEIIGLIDESCICARNQDFKAALEKAKLASNKERVLIKLQEQ------- 54
+ E++ +I S C N + ALE+AK E L+ + E+
Sbjct: 507 GGSDCAPEKLWLQIPFFCGHSSEC-WNVGSRWALEQAKYNLINEYFLVGVTEELEDFIML 565
Query: 55 --------FGHADSH--NIELTFSNINRKKNARAVRNDALSQLHREMKHEAE 96
F A + + +K A Q K E E
Sbjct: 566 LEAALPRFFRGATELYRTGKKSHLRKTTEKKLPTAATIAKLQQSEIWKMENE 617
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 26.8 bits (59), Expect = 8.4
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
E LY L + L EYS + L + +V
Sbjct: 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 27.3 bits (61), Expect = 9.0
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 225 HALDNDATCIEALYNLG-----LAHKHLNEYSDS 253
HA ++ +E LG + + N
Sbjct: 96 HAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTG 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.128 0.358
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,002,785
Number of extensions: 342835
Number of successful extensions: 1265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 323
Length of query: 425
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 329
Effective length of database: 4,021,377
Effective search space: 1323033033
Effective search space used: 1323033033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)