RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1863
(425 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 62.4 bits (150), Expect = 2e-11
Identities = 29/135 (21%), Positives = 52/135 (38%)
Query: 161 CDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGK 220
+ A +NL ++ QGE+ A E+A T D A++NLGN + +
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 221 ELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
Y+ AL NL + +++ + + + P P+ +A+ +
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 281 TGDVEQASDVNENLL 295
G V +A D L
Sbjct: 284 KGSVAEAEDCYNTAL 298
Score = 57.0 bits (136), Expect = 2e-09
Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 15/209 (7%)
Query: 186 EKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHK 245
+ +A + A+ NLG A+ + + A+ D ++A NLG K
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 246 HLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL------LEAV 299
+ ++ + + ++ P+ V +A +Y G ++ A D + +A
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 300 RNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEI 359
N A + + EAE C T+ +L + + Q A + LE+
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 360 ---------NKAVTFLRMNDVSQAVDVLK 379
N A + + +A+ K
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Score = 50.8 bits (120), Expect = 2e-07
Identities = 15/88 (17%), Positives = 33/88 (37%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L+ + G+ E AE+ + + N+ + L + + A+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 231 ATCIEALYNLGLAHKHLNEYSDSLECFH 258
EA NLG +K + +++E +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYR 91
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 53.3 bits (127), Expect = 3e-08
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 2/112 (1%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL 227
++ L I Q K +C+ + V+LG+ A R + + Y HA
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAA 179
Query: 228 DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
+ + L + ++ ++ + + A+ P +
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231
Score = 45.5 bits (107), Expect = 8e-06
Identities = 34/288 (11%), Positives = 73/288 (25%), Gaps = 26/288 (9%)
Query: 24 ICARNQDFKAALEKAKLASNKERVLIKLQEQFGHADSHNIELTFSNINRKKNARAVRNDA 83
+ Q + +K L +A +E N + KN
Sbjct: 29 VWTSRQALQDLYQKM------------LVTDLEYALDKKVEQDLWN-HAFKNQIT----T 71
Query: 84 LSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINKAV 143
L + + + + L + ++ + +
Sbjct: 72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKS---SQLGI 128
Query: 144 TFLRMNDVSQAVDVL-KSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202
+ S V SC + +L I + + QAE A N
Sbjct: 129 ISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188
Query: 203 FVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQA 262
+ L A ++ D++ Y ++ A NL A E D ++ +
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSD 248
Query: 263 IVPSMPEVLYQIASLYEITGDVEQASDVNENL--LLEAVRNDALSQLH 308
+ + + +Y + + + E + A +
Sbjct: 249 FIKAF---IKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQ 293
Score = 30.9 bits (69), Expect = 0.31
Identities = 16/149 (10%), Positives = 35/149 (23%), Gaps = 10/149 (6%)
Query: 184 QAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLG-L 242
Q+ + +A + + + +R+ ++LY L D L
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 243 AHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL------L 296
+ +L+ K +A L +G Q +
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120
Query: 297 EAVRNDALSQLHREMKHEAEKCILTSAKL 325
+ + K +S
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY 149
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 48.9 bits (116), Expect = 4e-07
Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 1/118 (0%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALY 238
+G+++QA ++ EA A +++ + D+ + E + ++ +
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 239 NLGLAHKHLNEYSDSLECFHK-LQAIVPSMPEVLYQIASLYEITGDVEQASDVNENLL 295
L K D + +L ++ D EQ S++ +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126
Score = 47.0 bits (111), Expect = 2e-06
Identities = 12/134 (8%), Positives = 40/134 (29%), Gaps = 4/134 (2%)
Query: 146 LRMNDVSQAVDVLK---SCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA 202
L + QA+++L +S ++ + + G+ E+A++ ++
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66
Query: 203 FVNLGNCAMAREDYVKG-KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQ 261
L + A + + + + + +Y E +++
Sbjct: 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126
Query: 262 AIVPSMPEVLYQIA 275
+ + +
Sbjct: 127 ELRQEKGFLANDTS 140
Score = 42.3 bits (99), Expect = 5e-05
Identities = 12/132 (9%), Positives = 33/132 (25%)
Query: 210 AMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPE 269
A++ + EL + A+ + ++ + E + + P
Sbjct: 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 270 VLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPS 329
Q+ L + + + + + L + ++L
Sbjct: 66 GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125
Query: 330 IEDNFSNGYNWC 341
E G+
Sbjct: 126 EELRQEKGFLAN 137
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 45.2 bits (106), Expect = 4e-06
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
N G A ++D+ + + D + +N+G + L +++ + F +
Sbjct: 10 NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 66
Query: 265 PSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKC 318
+ +Q LY T + A + L++ N + ++ + C
Sbjct: 67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 120
Score = 43.3 bits (101), Expect = 2e-05
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 17/152 (11%)
Query: 132 SLAQDLEI-NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAE 190
SL + + + N+ V D A+D + + S N+ +Y + + +AEK
Sbjct: 1 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFT 60
Query: 191 EACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL----------------DNDATCI 234
+ D + + A+ G E Y + AL
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 120
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPS 266
E LYN+ + E+ + E ++
Sbjct: 121 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152
Score = 26.0 bits (56), Expect = 9.0
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 352 SLAQDLEI-NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYF 397
SL + + + N+ V D A+D + + S N+ +Y
Sbjct: 1 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYT 47
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 43.3 bits (101), Expect = 6e-06
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 171 NLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDND 230
L + + + + A K ++A D N N + DY K +EL A++
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 231 ATCIE-------ALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEI 280
E A +G ++ +Y D++ ++K A + P+VL + +I
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124
Score = 35.6 bits (81), Expect = 0.003
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 7/120 (5%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
LGN A ++D+ + Y A + D T + + N + +Y+ E K +
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 265 PSMPEVL-------YQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEK 317
E +I + Y + A L E D L + + K E+
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ 128
Score = 25.2 bits (54), Expect = 9.2
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
LG ++ +L+ + K + + P+ + A++Y G
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG 52
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 44.6 bits (104), Expect = 6e-06
Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 1/164 (0%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFH 258
++ GN Y + Y A+ + N L + + + +L
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 259 KLQAIVPSMPEVLYQIASLYEITGDVEQA-SDVNENLLLEAVRNDALSQLHREMKHEAEK 317
+ + + + + ++A +++ L + A+K
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 318 CILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLAQDLEINK 361
S + E + + + R ++ E ++
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166
Score = 43.8 bits (102), Expect = 1e-05
Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 6/184 (3%)
Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
F+ + +A A T + + + N C + + + AL+ D +
Sbjct: 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNENL 294
+A + LG + Y +++ + ++ ++ +I + A N
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-----QRLNFGDDIPSALRIAKKKRWNS 127
Query: 295 LLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSLA 354
+ E R S+LH + + + E + +G+ Q+ + H
Sbjct: 128 IEER-RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYM 186
Query: 355 QDLE 358
D++
Sbjct: 187 ADMD 190
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 41.6 bits (97), Expect = 2e-05
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 179 QGEVEQAEKMAEEACTADTYNSAA---FVNLGNCAMAREDYVKGKELYVHALDNDATC-- 233
++ + EK + A + + + + +D KG L L +
Sbjct: 12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ 71
Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
+ ++ L + + L EY +L+ L P + + +
Sbjct: 72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
Score = 27.0 bits (59), Expect = 2.4
Identities = 9/81 (11%), Positives = 20/81 (24%), Gaps = 2/81 (2%)
Query: 170 TNLSFIYFLQGEVEQAEKMAEEACTADTYNSA--AFVNLGNCAMAREDYVKGKELYVHAL 227
++ + + EE + L ++Y K + L
Sbjct: 40 AWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
Query: 228 DNDATCIEALYNLGLAHKHLN 248
+ +A L K +
Sbjct: 100 QTEPQNNQAKELERLIDKAMK 120
Score = 26.6 bits (58), Expect = 3.0
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLA---HKHLNEYSDSLECFHKLQ 261
+ N ++ ED +K ++ + + + ++ ++ + +L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 262 AIV--PSMPEVLYQIASLYEITGDVEQASDVNENLL 295
+ ++ +A + E+A LL
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 37.5 bits (86), Expect = 3e-04
Identities = 8/85 (9%), Positives = 18/85 (21%), Gaps = 1/85 (1%)
Query: 196 DTYNSA-AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSL 254
D++ + + + + L L A + +L
Sbjct: 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL 66
Query: 255 ECFHKLQAIVPSMPEVLYQIASLYE 279
KL + P +
Sbjct: 67 LLTKKLLELDPEHQRANGNLKYFEY 91
Score = 36.3 bits (83), Expect = 0.001
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAA-------FVNLGNCAMAREDY 216
+T+ + L + + + + E E+A + L + D
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 217 VKGKELYVHALDNDATCIEALYNLGLAHKHLNE 249
K L L+ D A NL + +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 38.5 bits (88), Expect = 4e-04
Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
YF + E A K +A + N+ + N + E Y A++ D I
Sbjct: 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 78
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEIT--GDVEQASDVNE 292
+ Y ++ L ++ +L + + + P + + +I E+A +E
Sbjct: 79 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138
Query: 293 N 293
+
Sbjct: 139 H 139
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 39.4 bits (90), Expect = 5e-04
Identities = 15/115 (13%), Positives = 31/115 (26%)
Query: 164 MTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELY 223
+G++ A + E A D + A+ LG E +
Sbjct: 17 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76
Query: 224 VHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLY 278
L+ AL L ++ + + + E P+ ++
Sbjct: 77 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131
Score = 37.1 bits (84), Expect = 0.003
Identities = 7/64 (10%), Positives = 15/64 (23%)
Query: 223 YVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITG 282
Y +N + GL + +++ F P E + +
Sbjct: 8 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 283 DVEQ 286
Sbjct: 68 QELL 71
Score = 36.3 bits (82), Expect = 0.005
Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 7/199 (3%)
Query: 119 NWCVQSIRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKS-----CDEMTSSAATNLS 173
+ + + L + + ++ + + L
Sbjct: 120 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179
Query: 174 FIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATC 233
++ L GE ++A A + + + LG + Y AL+
Sbjct: 180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239
Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE-ITGDVEQA-SDVN 291
I + YNLG++ +L + +++E F + + + ++ E I + A S +
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299
Query: 292 ENLLLEAVRNDALSQLHRE 310
++ A LS L
Sbjct: 300 QSDAYGAADARDLSTLLTM 318
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 35.0 bits (79), Expect = 0.003
Identities = 16/105 (15%), Positives = 36/105 (34%)
Query: 175 IYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCI 234
G ++ A + EA D +N + N + DY K E +D
Sbjct: 12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 71
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
+ A + LN + ++ + + + P++ + ++
Sbjct: 72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116
Score = 26.9 bits (58), Expect = 2.5
Identities = 16/83 (19%), Positives = 29/83 (34%)
Query: 205 NLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
GN A++ + + Y A+ D N A+ +Y + E K +
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67
Query: 265 PSMPEVLYQIASLYEITGDVEQA 287
P + + A+ E E+A
Sbjct: 68 PDWGKGYSRKAAALEFLNRFEEA 90
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 34.7 bits (80), Expect = 0.004
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 213 REDYVKGKELYVHAL-DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVL 271
D G ++ + ++ E LY L + L EYS + L + +V
Sbjct: 51 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110
Query: 272 Y 272
Sbjct: 111 A 111
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 34.2 bits (77), Expect = 0.023
Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 2/141 (1%)
Query: 202 AFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNE-YSDSLECFHKL 260
+ E + +L A++ +A + + K L + + + +
Sbjct: 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 104
Query: 261 QAIVPSMPEVLYQIASLYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCIL 320
P +V + L E D Q + ++L + +N + HR+ + K
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFKLWD 163
Query: 321 TSAKLIAPSIEDNFSNGYNWC 341
+ + ++++ N W
Sbjct: 164 NELQYVDQLLKEDVRNNSVWN 184
Score = 31.8 bits (71), Expect = 0.13
Identities = 23/207 (11%), Positives = 55/207 (26%), Gaps = 12/207 (5%)
Query: 168 AATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMARE-DYVKGKELYVHA 226
+ E+A K+ +A + N + + + D +
Sbjct: 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 104
Query: 227 LDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
++ + ++ + + L + S LE + + + +
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 164
Query: 287 ASDVNENLLLEAVRN-----------DALSQLHREMKHEAEKCILTSAKLIAPSIEDNFS 335
+ LL E VRN + + E E + P E ++
Sbjct: 165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 224
Query: 336 NGYNWCVQSIRNSAHSSLAQDLEINKA 362
+ + L Q L++ +
Sbjct: 225 YLKGILQDRGLSKYPNLLNQLLDLQPS 251
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 33.2 bits (74), Expect = 0.039
Identities = 19/142 (13%), Positives = 40/142 (28%)
Query: 146 LRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVN 205
+ + + Q + D+ + +Y G A +A F
Sbjct: 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 76
Query: 206 LGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVP 265
LG ++ E + L+ D T A N G+A + + + P
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 136
Query: 266 SMPEVLYQIASLYEITGDVEQA 287
+ P + + + +
Sbjct: 137 NDPFRSLWLYLAEQKLDEKQAK 158
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC)
{Helicobacter pylori [TaxId: 210]}
Length = 265
Score = 32.6 bits (72), Expect = 0.065
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 199 NSAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKH 246
+ V LG + +D+ + K+ + A D +NLG+ +
Sbjct: 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQ 46
Score = 29.1 bits (63), Expect = 1.0
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 235 EALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQ 286
+ L LG +++ + + F K A + + LY VE+
Sbjct: 3 KELVGLGAKSYKEKDFTQAKKYFEK--ACDLKENSGCFNLGVLYYQGQGVEK 52
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 32.2 bits (71), Expect = 0.11
Identities = 13/173 (7%), Positives = 41/173 (23%), Gaps = 22/173 (12%)
Query: 125 IRNSAHSSLAQDLEINKAVTFLRMNDVSQAVDVLKSC--------DEMTSSAATNLSFIY 176
I++ ++ + +A + + +A + K A + L +
Sbjct: 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 61
Query: 177 FLQGEVEQAEKMAEEA------CTADTYNSAAFVNLGNCAMAREDYVKGKELYVHAL--- 227
+GE+ ++ + ++ Y + + A+ E A
Sbjct: 62 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 228 -----DNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIA 275
+ + ++ ++ S
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174
Score = 26.4 bits (56), Expect = 6.8
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 6/82 (7%)
Query: 153 QAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEA------CTADTYNSAAFVNL 206
+ + N++ L GE E AE + EE + + + L
Sbjct: 238 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297
Query: 207 GNCAMAREDYVKGKELYVHALD 228
+ + + AL
Sbjct: 298 NQLYWQAGRKSDAQRVLLDALK 319
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 30.3 bits (67), Expect = 0.40
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%)
Query: 151 VSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCA 210
+S V++LK ++ ++ F+ G EEA AD
Sbjct: 1 ISDPVELLKRAEKKGVPSS---GFMKLFSGSDSYK---FEEA--ADLCV-----QAATIY 47
Query: 211 MAREDYVKGKELYVHALD------NDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIV 264
R++ + ++ A D N+ K ++++ I
Sbjct: 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF 107
Query: 265 PSMPEVLYQIASLYEI 280
+ +E+
Sbjct: 108 THRGQFRRGANFKFEL 123
Score = 26.1 bits (56), Expect = 8.4
Identities = 12/146 (8%), Positives = 31/146 (21%)
Query: 234 IEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYEITGDVEQASDVNEN 293
+ ++ E + + + F K + E + +
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 294 LLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSNGYNWCVQSIRNSAHSSL 353
+ + + + K L + Y + +L
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 354 AQDLEINKAVTFLRMNDVSQAVDVLK 379
+ I A +A D+
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYS 182
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 28.8 bits (63), Expect = 0.66
Identities = 21/111 (18%), Positives = 35/111 (31%)
Query: 140 NKAVTFLRMNDVSQAVDVLKSCDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYN 199
+A+ F + +L + S NL+ Y + +A A + D N
Sbjct: 41 KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100
Query: 200 SAAFVNLGNCAMAREDYVKGKELYVHALDNDATCIEALYNLGLAHKHLNEY 250
A LG M + KE A + ++ + L L E
Sbjct: 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 151
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.1 bits (61), Expect = 1.3
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 175 IYFLQGEVEQAEKMAEEAC---------------TADTYNSAAFVNLGNCAMAREDYVKG 219
+YF +G+ +QA ++ A A+ +NL C + + +
Sbjct: 22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 81
Query: 220 KELYVHALDNDATCIEALYNLGLAHKHLNEYSDSLECFHKLQAIVPSMPEVLYQIASLYE 279
E AL+ D+ + L G AH +N++ + F K+ + P+ Q+A +
Sbjct: 82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 26.8 bits (58), Expect = 3.8
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 161 CDEMTSSAATNLSFIYFLQGEVEQAEKMAEEACTADTYNSAAFVNLGNCAMAREDYVK 218
D L E E A+ E+ + N AA + + C +++ +
Sbjct: 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1,
BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 25.6 bits (56), Expect = 5.9
Identities = 11/60 (18%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 277 LYEITGDVEQASDVNENLLLEAVRNDALSQLHREMKHEAEKCILTSAKLIAPSIEDNFSN 336
L E+ ++ + + + L + ++ +AL +L R +K E+ + ++ + +NF +
Sbjct: 27 LEELNKEL---TGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKD 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.128 0.358
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,419,173
Number of extensions: 60694
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 60
Length of query: 425
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,199,356
Effective search space: 404182972
Effective search space used: 404182972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)