Query psy1864
Match_columns 232
No_of_seqs 111 out of 1182
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:16:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 9.9E-36 2.1E-40 281.2 13.7 170 1-231 79-251 (459)
2 KOG3644|consensus 100.0 1.7E-34 3.6E-39 276.3 13.2 172 1-231 86-260 (457)
3 TIGR00860 LIC Cation transport 100.0 6.3E-34 1.4E-38 271.1 16.3 167 1-231 75-249 (459)
4 PF02931 Neur_chan_LBD: Neurot 100.0 5.9E-30 1.3E-34 216.4 19.0 158 1-222 46-217 (217)
5 KOG3645|consensus 100.0 8.1E-31 1.8E-35 249.4 14.0 164 2-231 76-248 (449)
6 KOG3642|consensus 100.0 4.7E-29 1E-33 236.9 10.9 168 1-231 88-259 (466)
7 KOG3646|consensus 100.0 1.2E-29 2.6E-34 241.1 5.3 162 3-230 74-243 (486)
8 KOG3642|consensus 98.8 2.5E-10 5.3E-15 109.7 -2.5 36 101-136 420-456 (466)
9 KOG3643|consensus 97.2 1.8E-05 3.9E-10 76.4 -4.6 27 109-135 431-457 (459)
10 KOG3644|consensus 96.7 7.5E-05 1.6E-09 72.7 -5.2 29 108-136 427-455 (457)
11 PF02932 Neur_chan_memb: Neuro 96.3 7.7E-05 1.7E-09 59.1 -6.2 26 107-132 212-237 (237)
12 TIGR00860 LIC Cation transport 67.5 0.47 1E-05 46.0 -3.9 27 108-134 432-458 (459)
13 PF06554 Olfactory_mark: Olfac 27.4 18 0.0004 30.6 -0.3 26 18-43 56-81 (151)
14 PF14494 DUF4436: Domain of un 22.2 1.8E+02 0.0039 26.6 5.1 19 143-161 97-116 (256)
No 1
>KOG3643|consensus
Probab=100.00 E-value=9.9e-36 Score=281.24 Aligned_cols=170 Identities=39% Similarity=0.857 Sum_probs=161.4
Q ss_pred CeEEEEEEEeEEEccCceecCCCCCeeEEEecc--CCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccc
Q psy1864 1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTE--ASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLD 78 (232)
Q Consensus 1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~--~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~ 78 (232)
||++.++++|.|.||||+|+ .++++.+++.+ .+++|.||.++-|++.+.+|+.+..|..++|++||+|+|+.+
T Consensus 79 DyTlt~y~rq~W~D~RLay~--~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~R--- 153 (459)
T KOG3643|consen 79 DYTLTMYLRQTWRDPRLAYS--SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIR--- 153 (459)
T ss_pred hhhhhhhhhhhhcCcccccC--CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEE---
Confidence 68999999999999999999 46899999976 899999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeE
Q psy1864 79 NMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLK 158 (232)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~ 158 (232)
++.|++|+|||++||+|+|.|+|.
T Consensus 154 --------------------------------------------------------lT~Ta~C~MDL~~fPmD~Q~C~Le 177 (459)
T KOG3643|consen 154 --------------------------------------------------------LTVTAACPMDLKLFPMDSQNCKLE 177 (459)
T ss_pred --------------------------------------------------------EEEEEecccccccCCCcccceeEE
Confidence 999999999999999999999999
Q ss_pred EeeeccCcceEEEEecCCC-CeeeeccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864 159 MASYGWTTDDLIFLWKEGD-PVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY 231 (232)
Q Consensus 159 ~~S~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~ 231 (232)
+.||||+++|+.+.|++|+ ++...++.+|++|++.++.+........+|.|+.|.+.|+|+|+.+||++|+|+
T Consensus 178 iESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~ 251 (459)
T KOG3643|consen 178 IESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYI 251 (459)
T ss_pred EEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeec
Confidence 9999999999999999865 788888999999999999888777777799999999999999999999999986
No 2
>KOG3644|consensus
Probab=100.00 E-value=1.7e-34 Score=276.33 Aligned_cols=172 Identities=46% Similarity=0.880 Sum_probs=157.7
Q ss_pred CeEEEEEEEeEEEccCceec-CC-C-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccc
Q psy1864 1 EYSVQLTFREQWLDERLKYN-DY-D-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDL 77 (232)
Q Consensus 1 ~~~v~~~~~~~W~D~rL~wn-~~-~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~ 77 (232)
||+++++++|+|.||||+++ .. + .......+....+||+||+++.|++.+.+|....+|+.++|++||+|.++.+
T Consensus 86 df~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~R-- 163 (457)
T KOG3644|consen 86 DFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYR-- 163 (457)
T ss_pred eEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEE--
Confidence 69999999999999999998 34 3 3233333332477999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEe
Q psy1864 78 DNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSL 157 (232)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l 157 (232)
+.++++|+|+|++||+|+|.|.+
T Consensus 164 ---------------------------------------------------------i~l~~~C~m~L~~fP~D~Q~C~l 186 (457)
T KOG3644|consen 164 ---------------------------------------------------------ISLTLPCNMDLSKFPMDSQECKL 186 (457)
T ss_pred ---------------------------------------------------------EEEeeceeeehhhCCCccceeeE
Confidence 99999999999999999999999
Q ss_pred EEeeeccCcceEEEEecCCCCeeeeccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864 158 KMASYGWTTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY 231 (232)
Q Consensus 158 ~~~S~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~ 231 (232)
.+.||+|+++|+++.|.+.+++++.++.+|++|.+.++....|+....+|.|||++++++|+|+.+||++|.|+
T Consensus 187 ~~eSy~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~Yi 260 (457)
T KOG3644|consen 187 QLESYAYNTDDVRLEWKEWNPVQVKKDIKLPDFSLPSFSTEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYI 260 (457)
T ss_pred EEEEeccccceEEEEecCCCCcccccCccCCceeccceeeccccccccCcceEEEEEEEEEEEeehhhhhHHHh
Confidence 99999999999999999999999999999999999999888887767799999999999999999999999986
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=6.3e-34 Score=271.07 Aligned_cols=167 Identities=43% Similarity=0.867 Sum_probs=143.9
Q ss_pred CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864 1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN 79 (232)
Q Consensus 1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~ 79 (232)
+|++++|++++|.|+||+|||++ ||++.+.++ .++||+||++++|++++..+.....++.+++++||+|.+..+
T Consensus 75 ~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~-~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~---- 149 (459)
T TIGR00860 75 DYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTP-DDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPR---- 149 (459)
T ss_pred eEEEeeeeeeEEeCCccCCCCccCCCceecccc-ccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecC----
Confidence 47899999999999999999999 999999998 999999999999999988887777889999999999999999
Q ss_pred cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864 80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM 159 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~ 159 (232)
+..+++|+||+++||||+|.|+|+|
T Consensus 150 -------------------------------------------------------~~~~~~C~~d~~~FPfD~Q~C~l~f 174 (459)
T TIGR00860 150 -------------------------------------------------------ITLTLACPMDLRNFPFDVQNCSLKF 174 (459)
T ss_pred -------------------------------------------------------ceEEecccceeccCCCCCccccEEE
Confidence 9999999999999999999999999
Q ss_pred eeeccCcceEEEEecCCCCeee-------eccEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864 160 ASYGWTTDDLIFLWKEGDPVQV-------VKNLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY 231 (232)
Q Consensus 160 ~S~~~~~~~l~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~ 231 (232)
+||+|+.+++.+.|.+++++.. ..+|++.+....+.....|+ .+.|++++++++++|+++||++++++
T Consensus 175 gSw~y~~~~i~l~~~~~~~v~~~~~~~~~~~eW~l~~~~~~~~~~~~~~----~~~y~~l~~~~~l~R~~~~y~~~l~i 249 (459)
T TIGR00860 175 ESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFELLGVYGTRYCTSETN----TGEYPCLTFSFVLRRRPLYYLLQLYI 249 (459)
T ss_pred hhhccccceEEEEECCCCceEechhhccccCceEEEeeeeeeeEecccC----CCCcCeEEEEEEEEEcccceeeeehH
Confidence 9999999999999876544332 23466555433332222233 46999999999999999999999874
No 4
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.97 E-value=5.9e-30 Score=216.40 Aligned_cols=158 Identities=33% Similarity=0.673 Sum_probs=127.5
Q ss_pred CeEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccc
Q psy1864 1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDN 79 (232)
Q Consensus 1 ~~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~ 79 (232)
+|+++++++++|.|+||+|||++ +|++.+.++ .++||+||+++.|...+. .........+.|+++|+|.+..+
T Consensus 46 ~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~-~~~iW~P~l~~~n~~~~~-~~~~~~~~~~~v~~~G~V~~~~~---- 119 (217)
T PF02931_consen 46 TFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVP-SSQIWTPDLYFYNSVSGS-FEITEPNSNVRVYSDGTVRYSPR---- 119 (217)
T ss_dssp EEEEEEEEEEEEEECCGE-STTTTTTESEEEEE-GGGS----EEETTBSSSE-EECS-SSEEEEEETTSEEEEEEE----
T ss_pred hhhhhhhhceeccccccccChhhccCccccccc-ccceEecccccccccccc-eecccccccccccccchheeeec----
Confidence 37899999999999999999999 999999998 889999999999954333 33333567888999999999999
Q ss_pred cccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEE
Q psy1864 80 MRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKM 159 (232)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~ 159 (232)
+.+++.|+|+++.||||+|.|.++|
T Consensus 120 -------------------------------------------------------~~~~~~C~~d~~~fPfD~q~C~i~~ 144 (217)
T PF02931_consen 120 -------------------------------------------------------FTLTFSCPMDLRDFPFDSQNCSIKF 144 (217)
T ss_dssp -------------------------------------------------------EEEEEEECETTTSSSSSEEEEEEEE
T ss_pred -------------------------------------------------------ccccccccccccccccccceeEEEE
Confidence 9999999999999999999999999
Q ss_pred eeeccCcceEEEEecCCCC------------eeeeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecc
Q psy1864 160 ASYGWTTDDLIFLWKEGDP------------VQVVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREF 222 (232)
Q Consensus 160 ~S~~~~~~~l~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~ 222 (232)
+||+++.+++.+.+....+ .....+|++.+++.......+ |+.. ..|+++.++|+|+|+|
T Consensus 145 ~s~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~---~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 145 GSWSYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNE---PTYSMLSFTFTLKRRP 217 (217)
T ss_dssp EESSSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSS---CSEEEEEEEEEEEEST
T ss_pred ecccccccceeeeecccCceeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCC---CCEeeEEEEEEEEECc
Confidence 9999999999999887321 223357898888877666654 3332 1299999999999997
No 5
>KOG3645|consensus
Probab=99.97 E-value=8.1e-31 Score=249.36 Aligned_cols=164 Identities=24% Similarity=0.535 Sum_probs=139.6
Q ss_pred eEEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccccc
Q psy1864 2 YSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNM 80 (232)
Q Consensus 2 ~~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~ 80 (232)
-++++|+.++|.|+||+|||++ |||+.++++ .++||.||+.++|+..+........+ +.+.++|+|.+..+
T Consensus 76 ~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp-~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~~p----- 147 (449)
T KOG3645|consen 76 MTTNVWLKQSWTDERLSWDPSDYGGITKIRVP-SSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWYPP----- 147 (449)
T ss_pred EEEEEEeeeEEeccCcccChHHcCCceEEEec-HHHcCcCcEEEEecccccccccccce--EEEEECCEEEEEcc-----
Confidence 3788999999999999999999 999999998 99999999999998888877766666 55578999999999
Q ss_pred ccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEe
Q psy1864 81 RQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMA 160 (232)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~ 160 (232)
+..+++|++|+++||||.|.|+++|+
T Consensus 148 ------------------------------------------------------~i~~s~C~idv~~FPfD~Q~C~i~f~ 173 (449)
T KOG3645|consen 148 ------------------------------------------------------AIYKSSCPIDVTYFPFDVQNCSIKFG 173 (449)
T ss_pred ------------------------------------------------------eEEEeecccccccCCCcceeEeEEEe
Confidence 99999999999999999999999999
Q ss_pred eeccCcceEE-EEecCC----CC--eeeeccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864 161 SYGWTTDDLI-FLWKEG----DP--VQVVKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY 231 (232)
Q Consensus 161 S~~~~~~~l~-~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~ 231 (232)
||.|+.+++. +..... +. ...+.+|.+.+.+.......+ |+. +.|+.++|.+.+||+|+||++++++
T Consensus 174 sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~----~~~~~i~f~l~irRkplyY~v~lii 248 (449)
T KOG3645|consen 174 SWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEKKYDCCP----GPYSDITFTITIRRKPLYYTVNLII 248 (449)
T ss_pred ccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeEEeecccCCCC----CceeEEEEEEEEEeccceEEEehhh
Confidence 9999999765 332221 21 223457999988887766665 554 4899999999999999999999864
No 6
>KOG3642|consensus
Probab=99.96 E-value=4.7e-29 Score=236.90 Aligned_cols=168 Identities=37% Similarity=0.774 Sum_probs=155.0
Q ss_pred CeEEEEEEEeEEEccCceecCCCCCeeEEEecc--CCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEecccc
Q psy1864 1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTE--ASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLD 78 (232)
Q Consensus 1 ~~~v~~~~~~~W~D~rL~wn~~~g~i~~l~l~~--~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~ 78 (232)
||+++++|||+|.|+||++| |-.+.|.+.. .++||.||.++.|++.+..|...++|..++|..||++.|+.+
T Consensus 88 eytid~~FrQ~W~D~RL~f~---~~~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~R--- 161 (466)
T KOG3642|consen 88 EYTIDCFFRQTWVDDRLKFN---GPQEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMR--- 161 (466)
T ss_pred eEEEEEEEEEeehhhhhccc---CcchhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEE---
Confidence 79999999999999999999 3455566654 899999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeE
Q psy1864 79 NMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLK 158 (232)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~ 158 (232)
....+.|||++..||+|.|.|.|+
T Consensus 162 --------------------------------------------------------lTi~A~C~m~l~~fPMD~haCpl~ 185 (466)
T KOG3642|consen 162 --------------------------------------------------------LTIPAECPMHLARFPMDSHACPLK 185 (466)
T ss_pred --------------------------------------------------------EeecccCcchhhcCCCCcccCcce
Confidence 999999999999999999999999
Q ss_pred EeeeccCcceEEEEecCCCCeeeec--cEEeCcEEEEEEEEEeeecCCCCCceEEEEEEEEEEecccceEEEEEE
Q psy1864 159 MASYGWTTDDLIFLWKEGDPVQVVK--NLHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIYY 231 (232)
Q Consensus 159 ~~S~~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~~ 231 (232)
|+|++|+.+|++..|..+ .+.+.+ .|+|.+|.+.+.........+.+|.|+.+++.|+|+|+.|||++|+|+
T Consensus 186 fgSy~Y~~~evvY~W~~~-~VeV~~~~~~~L~Qf~l~g~~~~te~i~t~~gey~vmtv~F~L~R~~GYf~iQ~Yl 259 (466)
T KOG3642|consen 186 FGSYAYPGSEVVYKWKKR-SVEVNETDSWSLDQFDLLGVSVGTEDIKTSSGEYSVMTVYFHLSRRQGYFIIQIYL 259 (466)
T ss_pred ecccCcCCCCEEEEEecc-cEEEcCCCCccccceeeecccccccceEecCCCEEEEEEEEeccceeeEEEEeecc
Confidence 999999999999999987 566654 489999999988888888888999999999999999999999999986
No 7
>KOG3646|consensus
Probab=99.96 E-value=1.2e-29 Score=241.06 Aligned_cols=162 Identities=23% Similarity=0.423 Sum_probs=142.9
Q ss_pred EEEEEEEeEEEccCceecCCC-CCeeEEEeccCCceecCcEEeeccccCcceeeeecceEEEEcCCceEEEEeccccccc
Q psy1864 3 SVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVLYSISDLDNMR 81 (232)
Q Consensus 3 ~v~~~~~~~W~D~rL~wn~~~-g~i~~l~l~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~i~I~~~G~V~~s~~~~~~~~ 81 (232)
++++|++++|+|.+|+|||++ |||+.++++ .+++|.||+.++|+++..++..-..|..+ .++|+|.|.++
T Consensus 74 ~~naWl~y~W~D~~LrW~pseygnI~dvR~p-~~~iWkPDVLLYNSade~FDsTy~tN~Vv--~~tG~v~~vPP------ 144 (486)
T KOG3646|consen 74 SVNAWLQYQWNDYKLRWDPSEYGNITDIRFP-GGNIWKPDVLLYNSADEQFDSTYKTNYVV--YSTGSVLWVPP------ 144 (486)
T ss_pred hhhhhhheeehhhhhccCHHHhCCceeeccC-CccccCCceeccccccccCCCcceeeEEE--ccCCeeeecCC------
Confidence 578999999999999999999 999999998 88999999999999998887766665554 89999999999
Q ss_pred cccccccccCCCCcccccccccccccccceeeeeeeeecceeEeeeeeeeeeeeeEEeccccccccCcccceeEEeEEee
Q psy1864 82 QCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMAS 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~~t~~C~m~l~~fPfD~Q~C~l~~~S 161 (232)
..++++|++|++.||||.|.|.+||||
T Consensus 145 -----------------------------------------------------GIfk~sCkiDItwFPFD~Q~C~mKFGS 171 (486)
T KOG3646|consen 145 -----------------------------------------------------GIFKSSCKIDITWFPFDDQVCYLKFGS 171 (486)
T ss_pred -----------------------------------------------------ceeeeeeEEEEEEecccccEEEEEeee
Confidence 999999999999999999999999999
Q ss_pred eccCcceEEEEecCCC----Ceee--eccEEeCcEEEEEEEEEe-eecCCCCCceEEEEEEEEEEecccceEEEEE
Q psy1864 162 YGWTTDDLIFLWKEGD----PVQV--VKNLHLPRFTLEKFYTDY-CNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230 (232)
Q Consensus 162 ~~~~~~~l~~~~~~~~----~~~~--~~~~~l~~~~~~~~~~~~-~~~~~~~~~ys~l~~~l~lkR~~~yYli~i~ 230 (232)
|+|+...+.+....++ ...+ ++||+|.+..+.+....| ||++ +|..++|+++++||..||.+|++
T Consensus 172 WTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~e----pY~dv~F~l~irRRTLyYgfNlI 243 (486)
T KOG3646|consen 172 WTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPE----PYPDVTFYLHIRRRTLYYGFNLI 243 (486)
T ss_pred EEEcceeeeeeeccccCCcchhhcccCCceeeccccccceeeecccCCC----CcceeEEEEEEEehhhHHHHHHH
Confidence 9999998887765543 2222 457999999998766665 8886 99999999999999999988764
No 8
>KOG3642|consensus
Probab=98.83 E-value=2.5e-10 Score=109.74 Aligned_cols=36 Identities=42% Similarity=0.868 Sum_probs=34.8
Q ss_pred c-ccccccccceeeeeeeeecceeEeeeeeeeeeeee
Q psy1864 101 W-LAKFPTRSKRIDVISRITFPLVFALFNLTYWSTIS 136 (232)
Q Consensus 101 w-~~~~~~~~~~~~~~~r~~fp~~f~~fn~~yw~~~~ 136 (232)
| +||+++++.|+|+||||+||++|++|||+||++..
T Consensus 420 ~~~~~~~~~vskiD~~sRivFPv~F~~fNlvYW~~yL 456 (466)
T KOG3642|consen 420 WRQGRLYISVSKIDNYSRIVFPVLFILFNLVYWVVYL 456 (466)
T ss_pred ccCCCcccchhhhhccchhhhHHHHHHHHHHHHhhhc
Confidence 9 99999999999999999999999999999999873
No 9
>KOG3643|consensus
Probab=97.18 E-value=1.8e-05 Score=76.42 Aligned_cols=27 Identities=52% Similarity=0.995 Sum_probs=25.1
Q ss_pred cceeeeeeeeecceeEeeeeeeeeeee
Q psy1864 109 SKRIDVISRITFPLVFALFNLTYWSTI 135 (232)
Q Consensus 109 ~~~~~~~~r~~fp~~f~~fn~~yw~~~ 135 (232)
...+|-|||++||++|.|||++||+..
T Consensus 431 ~~~IDkySR~~FP~~F~lFNivYW~yy 457 (459)
T KOG3643|consen 431 VSKIDKYSRIVFPLAFSLFNIVYWLYY 457 (459)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhee
Confidence 668999999999999999999999864
No 10
>KOG3644|consensus
Probab=96.68 E-value=7.5e-05 Score=72.67 Aligned_cols=29 Identities=52% Similarity=0.989 Sum_probs=26.6
Q ss_pred ccceeeeeeeeecceeEeeeeeeeeeeee
Q psy1864 108 RSKRIDVISRITFPLVFALFNLTYWSTIS 136 (232)
Q Consensus 108 ~~~~~~~~~r~~fp~~f~~fn~~yw~~~~ 136 (232)
...++|.+||++||++|++||++||....
T Consensus 427 ~~~~ID~~sr~~FP~~F~~FN~~YW~~y~ 455 (457)
T KOG3644|consen 427 TAERIDRISRFLFPLLFLLFNIIYWTYYL 455 (457)
T ss_pred chHHHhHHHHHHHHHHHHHHHHHHhhheE
Confidence 67789999999999999999999998754
No 11
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=96.35 E-value=7.7e-05 Score=59.14 Aligned_cols=26 Identities=46% Similarity=0.908 Sum_probs=24.2
Q ss_pred cccceeeeeeeeecceeEeeeeeeee
Q psy1864 107 TRSKRIDVISRITFPLVFALFNLTYW 132 (232)
Q Consensus 107 ~~~~~~~~~~r~~fp~~f~~fn~~yw 132 (232)
....++|-++||+||++|++||++||
T Consensus 212 ~~A~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 212 FVAMVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp STSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 45679999999999999999999999
No 12
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=67.46 E-value=0.47 Score=45.97 Aligned_cols=27 Identities=56% Similarity=1.109 Sum_probs=24.6
Q ss_pred ccceeeeeeeeecceeEeeeeeeeeee
Q psy1864 108 RSKRIDVISRITFPLVFALFNLTYWST 134 (232)
Q Consensus 108 ~~~~~~~~~r~~fp~~f~~fn~~yw~~ 134 (232)
....+|-++|++||++|+++|++||..
T Consensus 432 ~a~viDr~~~~~f~~~~~~~~~~~~~~ 458 (459)
T TIGR00860 432 RAKVIDKLSRMAFPLAFLLFNIGYWMS 458 (459)
T ss_pred ccchhhHHHHHHHHHHHHHhhhhheEe
Confidence 356899999999999999999999985
No 13
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=27.37 E-value=18 Score=30.56 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=16.0
Q ss_pred eecCCCCCeeEEEeccCCceecCcEE
Q psy1864 18 KYNDYDGRIKYLTLTEASRVWMPDLF 43 (232)
Q Consensus 18 ~wn~~~g~i~~l~l~~~~~iW~Pdi~ 43 (232)
.|+-.-.+-..+++++.+++|+||+.
T Consensus 56 ~W~v~l~~pGkvtItgtsQ~WTPDLT 81 (151)
T PF06554_consen 56 RWNVSLDKPGKVTITGTSQLWTPDLT 81 (151)
T ss_dssp EEEEEESSSEEEEEEEB-TTS-TTTS
T ss_pred EEEEEeCCCCeEEEEeeccccCcchh
Confidence 45443345556777778999999983
No 14
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=22.24 E-value=1.8e+02 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=14.2
Q ss_pred cccccCcccceeEE-eEEee
Q psy1864 143 MNLKLYPLDRQSCS-LKMAS 161 (232)
Q Consensus 143 m~l~~fPfD~Q~C~-l~~~S 161 (232)
=++..||||+-.=. +.+..
T Consensus 97 G~~~~yPFD~Y~~~~i~v~~ 116 (256)
T PF14494_consen 97 GDINNYPFDRYRTDPIRVSA 116 (256)
T ss_pred CCccCCCCcccccceEEEEE
Confidence 56888999998777 55544
Done!