RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1864
(232 letters)
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 160 bits (407), Expect = 3e-48
Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 76/242 (31%)
Query: 1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTE--ASRVWMPDLFFSNEKEGHFHNIIM 57
Y V QW + K ++ + + +W+P L F N +
Sbjct: 32 TYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVV----GSPDT 87
Query: 58 PNVYIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISR 117
N + + P G V+Y+ R
Sbjct: 88 GNKRLMLFPDGRVIYNA------------------------------------------R 105
Query: 118 ITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGD 177
+ S M+ +L+P DRQ L++ + + L F +
Sbjct: 106 FLG-----------------SFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQ-V 147
Query: 178 PVQVVKNLHLPRFTL---------EKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQ 228
+ + N + + + + Y + + N +S + V + R SYYL
Sbjct: 148 YTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWS 207
Query: 229 IY 230
Sbjct: 208 FI 209
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 156 bits (396), Expect = 4e-48
Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 67/230 (29%)
Query: 1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
+ V W D RL ++ ++ T E +W+P++ F N + +++
Sbjct: 36 TFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY-EPEAIWIPEIRFVNVENARDADVVD--- 91
Query: 61 YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
I + P G+V Y R +
Sbjct: 92 -ISVSPDGTVQYLE------------------------------------------RFSA 108
Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQ 180
+ P++ + D Q+ + + T +++ + V
Sbjct: 109 -----------------RVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL-EKVG 150
Query: 181 VVKNLHLPRFTLEKFYTDYCNSKTNTG--AYSCLKVDLLFKREFSYYLIQ 228
++ L + +E F + S L L R+ ++
Sbjct: 151 KNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHHHHH 200
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 119 bits (300), Expect = 2e-32
Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 3/103 (2%)
Query: 131 YWST-ISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQV--VKNLHL 187
+S ISL LSCPM L+ YP+D Q CS+ +ASY +TT D+ +LWKE P+Q+ + L
Sbjct: 119 LYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSL 178
Query: 188 PRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQIY 230
P F L T YC S TNTG YSCL+ + KREFS+YL+Q+Y
Sbjct: 179 PSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLY 221
Score = 94.5 bits (235), Expect = 4e-23
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 1 EYSVQLTFREQWLDERLKYNDYD-GRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPN 59
EYS QLT RE W+D+RL Y G+ ++ LT ++WMPD FF NEK+ + H I PN
Sbjct: 48 EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPN 107
Query: 60 VYIRIHPQGSVLYSI 74
V IRIH G+VLYS+
Sbjct: 108 VLIRIHNDGTVLYSV 122
Score = 35.6 bits (82), Expect = 0.010
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 96 NCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTIS 136
+ + ++ SKR+D+ISR FP++F +FN+ YWS
Sbjct: 299 HIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFG 339
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 111 bits (281), Expect = 1e-29
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 128 NLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHL 187
+ Y S + P++ + YP D Q+ + + T +++ + V ++ L
Sbjct: 103 TVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL-EKVGKNDDVFL 161
Query: 188 PRFTLEKFYTDYCNSK--TNTGAYSCLKVDLLFKREFSYYLIQIY 230
+ +E F + S L L R++ Y+ I
Sbjct: 162 TGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNII 206
Score = 79.2 bits (196), Expect = 1e-17
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 1 EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
+ V W D RL ++ ++ T +W+P++ F N + +++
Sbjct: 40 TFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE-PEAIWIPEIRFVNVENARDADVVD--- 95
Query: 61 YIRIHPQGSVLYSI 74
I + P G+V Y
Sbjct: 96 -ISVSPDGTVQYLE 108
Score = 33.4 bits (77), Expect = 0.043
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 106 PTRSKRIDVISRITFPLVFALFNLTYW 132
P R+ I SRI FP+VF L N+
Sbjct: 289 PARAASITRASRIAFPVVFLLANIILA 315
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 48.7 bits (116), Expect = 5e-07
Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 81/238 (34%)
Query: 3 SVQLTFREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
+ R+QW+D RL++N DY G IK + L + VW+PDL N +G F + M +
Sbjct: 51 ETNVRLRQQWIDVRLRWNPADYGG-IKKIRLP-SDDVWLPDLVLYNNADGDFAIVHMTKL 108
Query: 61 YIRIHPQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITF 120
+ G +++ P K+ C
Sbjct: 109 L--LDYTGKIMW----------------TPPAIFKSYCE--------------------- 129
Query: 121 PLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTD----DLIFLWKEG 176
+T++ P D+Q+C++K+ WT D +
Sbjct: 130 ------IIVTHF----------------PFDQQNCTMKLGI--WTYDGTKVSISPESDRP 165
Query: 177 DPVQVVKN-----LHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQI 229
D +++ + +YT ++ Y + + +R Y+++ +
Sbjct: 166 DLSTFMESGEWVMKDYRGWKHWVYYTCCPDTP-----YLDITYHFIMQRIPLYFVVNV 218
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 46.4 bits (110), Expect = 2e-06
Identities = 43/230 (18%), Positives = 70/230 (30%), Gaps = 78/230 (33%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
W D RL +N +Y I L L +W+PD+ N +G ++ NV +
Sbjct: 58 MDHAWYDHRLTWNASEYSD-ISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCNVL--VR 113
Query: 66 PQGSVLYSISDLDNMRQCEVHMTVPQTPRKNCCRSWLAKFPTRSKRIDVISRITFPLVFA 125
P G V + P R +C I+V
Sbjct: 114 PNGYVTW---------------LPPAIFRSSC-------------PINV----------- 134
Query: 126 LFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTD-DLIFLWKEGDPVQVVKN 184
Y+ P D Q+CSLK + + + I + DP +N
Sbjct: 135 ----LYF----------------PFDWQNCSLKFTA--LNYNANEISMDLIIDPEAFTEN 172
Query: 185 -----LHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQI 229
+H P + Y + L+ +R+ +Y+I
Sbjct: 173 GEWEIIHKPAKKNIYGDKFPNGTN-----YQDVTFYLIIRRKPLFYVINF 217
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 45.7 bits (108), Expect = 5e-06
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
QW D RL +N +Y+G I + + + +W+PD+ N +G F NV ++
Sbjct: 55 IEIQWNDYRLSWNTSEYEG-IDLVRIP-SELLWLPDVVLENNVDGQFEVAYYANVL--VY 110
Query: 66 PQGSVLY 72
GS+ +
Sbjct: 111 NDGSMYW 117
Score = 35.6 bits (82), Expect = 0.009
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 140 SCPMNLKLYPLDRQSCSLKMASYGWTTD----DLIFLWKEG-DPVQVVKN-----LHLPR 189
+CP+ + +P D Q+CSL S T + +L +EG DP +N H P
Sbjct: 126 TCPIAVTYFPFDWQNCSLVFRS--QTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPA 183
Query: 190 FTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQI 229
+ + + + L+ +R+ +Y+I I
Sbjct: 184 KKNYNWQLTKDDID-----FQEIIFFLIIQRKPLFYIINI 218
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 44.3 bits (105), Expect = 7e-06
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
++QW+D LK+N DY G +K + + + ++W PD+ N +G F + V +
Sbjct: 57 LKQQWVDYNLKWNPDDYGG-VKKIHIP-SEKIWRPDVVLYNNADGDFAIVKFTKVL--LD 112
Query: 66 PQGSVLYS 73
G + ++
Sbjct: 113 YTGHITWT 120
Score = 36.3 bits (84), Expect = 0.004
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 130 TYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWT-TDDLIFLWKEGDPV 179
T+ C + + +P D Q+CS+K+ + T + + E D
Sbjct: 118 TWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGT--RTYDGSAVAINPESDQP 166
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 44.5 bits (105), Expect = 1e-05
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
W D RL+++ Y+G IK L++ + VW PD+ N +G F + NV +
Sbjct: 56 LNLAWTDYRLQWDPAAYEG-IKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNVL--VQ 111
Query: 66 PQGSVLY 72
G+V +
Sbjct: 112 HTGAVSW 118
Score = 36.0 bits (83), Expect = 0.008
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 140 SCPMNLKLYPLDRQSCSLKMASYGWTTD--DLIFLWKEG-DPVQVVKN--LHLPRFTLEK 194
SC + + +P D Q+C++ SY + T L + +N + K
Sbjct: 127 SCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKPSRK 186
Query: 195 FYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLIQI 229
+ + + Y + L+ +R+ +Y++
Sbjct: 187 NWR--SDDPS----YEDVTFYLIIQRKPLFYIVYT 215
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 43.2 bits (101), Expect = 4e-05
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
W D RL+++ Y+G IK L++ + VW PD+ N +G F + NV ++
Sbjct: 80 LNLAWTDYRLQWDPAAYEG-IKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNVLVQ-- 135
Query: 66 PQGSVLYSI 74
G+V +
Sbjct: 136 HTGAVSWHP 144
Score = 33.9 bits (77), Expect = 0.036
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 140 SCPMNLKLYPLDRQSCSLKMASY---GWTTDDLIFLWKEGDPVQVVKNLHLPRFTLE--- 193
SC + + +P D Q+C++ SY L +G+ ++ FT
Sbjct: 151 SCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQW 210
Query: 194 --KFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLI 227
+ N +++ +Y + L+ +R+ +Y++
Sbjct: 211 SIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIV 246
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 42.4 bits (99), Expect = 7e-05
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
QW D RL +N +Y+G I + + + +W+PD+ N +G F NV ++
Sbjct: 55 IEIQWNDYRLSWNTSEYEG-IDLVRIP-SELLWLPDVVLENNVDGQFEVAYYANVL--VY 110
Query: 66 PQGSVLYS 73
GS+ +
Sbjct: 111 NDGSMYWL 118
Score = 35.9 bits (82), Expect = 0.010
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 140 SCPMNLKLYPLDRQSCSLKMASYGWTTDDLIF-LWKEGDPVQVVKNLHLPRFTLE-KFYT 197
+CP+ + +P D Q+CSL S + ++ L E V ++ FT ++
Sbjct: 126 TCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTI 185
Query: 198 DYCNSKTNTGAYSC--------LKVDLLFKREFSYYLI 227
+ +K N + L+ +R+ +Y+I
Sbjct: 186 RHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYII 223
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 41.5 bits (97), Expect = 1e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 3 SVQLTFREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
+ R+QW+D RL++N DY G IK + L + VW+PDL N +G F + M +
Sbjct: 75 ETNVRLRQQWIDVRLRWNPADYGG-IKKIRLP-SDDVWLPDLVLYNNADGDFAIVHMTKL 132
Query: 61 YIRIHPQGSVLYS 73
+ G ++++
Sbjct: 133 L--LDYTGKIMWT 143
Score = 36.1 bits (83), Expect = 0.006
Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 137 LTLSCPMNLKLYPLDRQSCSLKMAS--YGWTTDDLIFLWKEGDPVQVVKN-----LHLPR 189
C + + +P D+Q+C++K+ Y T + D +++
Sbjct: 148 FKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRG 207
Query: 190 FTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLI 227
+ +YT ++ Y + + +R Y+++
Sbjct: 208 WKHWVYYTCCPDTP-----YLDITYHFIMQRIPLYFVV 240
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 40.3 bits (94), Expect = 2e-04
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
+ W+D L+++ + + + +W PD+ N + +
Sbjct: 65 VKLSWVDTILRWDPEPPFD-FQKIEI-SPDEIWTPDIKLFNSVDLDMTLDRTTQAI--VF 120
Query: 66 PQGSVLYS 73
G+VL+
Sbjct: 121 SNGTVLWI 128
Score = 29.1 bits (65), Expect = 0.96
Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 31/200 (15%)
Query: 36 RVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQGSVL-YSISDLDNMRQCEVHMTVPQTPR 94
+ + L ++ F++I +++ ++L + + ++ E+ TP
Sbjct: 39 GLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPD 98
Query: 95 KNCCRSWLAKFPTRSKRIDVISRITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQS 154
+ F + + + R T +VF+ + + L + C D S
Sbjct: 99 -------IKLFNSVDLDMTL-DRTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDS 145
Query: 155 CSLKMASYGWTTD----DLIFLWKEGDPVQVVKN-----LHLPRFTLEKFYTDYCNSKTN 205
C + S W D+ F+ + + + L E Y
Sbjct: 146 CHFQFGS--WVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCC------ 197
Query: 206 TGAYSCLKVDLLFKREFSYY 225
AY +K L + E
Sbjct: 198 ESAYVEMKYLLALRSENGNS 217
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 40.2 bits (93), Expect = 3e-04
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
W D RL +N +Y I L L +W+PD+ N +G ++ NV +
Sbjct: 79 MDHAWYDHRLTWNASEYSD-ISILRLR-PELIWIPDIVLQNNNDGQYNVAYFCNVL--VR 134
Query: 66 PQGSVLYS 73
P G V +
Sbjct: 135 PNGYVTWL 142
Score = 35.1 bits (80), Expect = 0.014
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
Query: 130 TYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHLPR 189
T+ SCP+N+ +P D Q+CSLK + + +++ +
Sbjct: 140 TWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWII 199
Query: 190 FTLEKFYTD------YCNSKTNTGAYSC--------LKVDLLFKREFSYYLI 227
E F + + +K N + L+ +R+ +Y+I
Sbjct: 200 IDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVI 251
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 39.0 bits (91), Expect = 4e-04
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 9 REQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHP 66
+ W D L++N +Y G +K +++ S +W+PDL N ++ ++
Sbjct: 55 QMSWTDHYLQWNVSEYPG-VKQVSVP-ISSLWVPDLAAYNAISKPE---VLTPQLALVNS 109
Query: 67 QGSVLY 72
G V Y
Sbjct: 110 SGHVQY 115
Score = 28.6 bits (64), Expect = 1.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 137 LTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKN 184
SC ++ +C LK S+ + +L +E D +
Sbjct: 121 QRFSCDVSGV-DTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPY 167
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 8 FREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQ 67
+ W + ++L S++W PDL F N ++ + +
Sbjct: 52 TQASWKVPYYSSLLSSSSLDQVSLP-VSKMWTPDLSFYNAIAAPE---LLSADRVVVSKD 107
Query: 68 GSVLY 72
GSV+Y
Sbjct: 108 GSVIY 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 55/151 (36%)
Query: 112 IDVIS-RITFPLVFALFNLTYWSTISLTLSCPMNLKLYPLDRQSCSLK---MASYGWTTD 167
+D S R PL L++ S + L P + + Q L+ T+
Sbjct: 1 MDAYSTR---PLT-----LSHGS-LEHVLLVPTAS--FFIASQ---LQEQFNKILPEPTE 46
Query: 168 DLIFLWKEGDPVQVVKNLHLPRFTLEKF--YTDYCNSKTNTGAY-SCLKVDLL-FKREF- 222
+ +P L + KF Y + G + L + L F+ +
Sbjct: 47 GF---AADDEPTTPA---EL----VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 223 ----------------------SYYLIQIYY 231
+ LI+ Y
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 8 FREQWLDERLKYN--DYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIH 65
+++W L ++ +Y I + A+ +W PD+ + ++ +
Sbjct: 65 EQQRWKLNSLMWDPNEYGN-ITDFRTS-AADIWTPDITAYSSTRPVQ---VLSPQIAVVT 119
Query: 66 PQGSVLY 72
GSV++
Sbjct: 120 HDGSVMF 126
Score = 31.3 bits (71), Expect = 0.20
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 18/105 (17%)
Query: 130 TYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTD----DLIFLWKEGDPVQVVKN- 184
+ L+ C + + +C++K S W DL + D +
Sbjct: 125 MFIPAQRLSFMCDPT-GVDSEEGATCAVKFGS--WVYSGFEIDLKTDTDQVDLSSYYASS 181
Query: 185 ----LHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYY 225
L + + Y+ Y + + + F+ +
Sbjct: 182 KYEILSATQTRQVQHYSCC------PEPYIDVNLVVKFRERRAGN 220
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 36.4 bits (84), Expect = 0.003
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 8 FREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIHPQ 67
+ W D L +N +++ S +W+PDL N ++ R+
Sbjct: 55 QQTTWSDRTLAWNSSHS-PDQVSVP-ISSLWVPDLAAYNAISKPE---VLTPQLARVVSD 109
Query: 68 GSVLYS 73
G VLY
Sbjct: 110 GEVLYM 115
Score = 32.5 bits (74), Expect = 0.071
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 130 TYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTD----DLIFLWKEGDPVQVVKN- 184
Y +I SC ++ +C +K+ S WT + + D +
Sbjct: 113 LYMPSIRQRFSCDVSGVDTE-SGATCRIKIGS--WTHHSREISVDPTTENSDDSEYFSQY 169
Query: 185 -----LHLPRFTLEKFYTDYCNSKTNTGAYSCLKVDLLFKREFSYYLI 227
L + + Y+ + Y ++V L F+++ ++
Sbjct: 170 SRFEILDVTQKKNSVTYSCCPEA------YEDVEVSLNFRKKGRSEIL 211
>1qmn_A AACT, alpha-1-antichymotrypsin; serpin, serine proteinase
inhibitor, partial loop insertion, loop-sheet
polymerization, emphysema, disease mutation; 2.27A {Homo
sapiens} SCOP: e.1.1.1 PDB: 3dlw_A
Length = 401
Score = 27.6 bits (62), Expect = 3.2
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 166 TDDLIFLWKEGDPVQVVKNLHLPRFTLEKFY 196
+ + W++ + + L+LP+F++ + Y
Sbjct: 270 LPETLKRWRDSLEFREIGELYLPKFSISRDY 300
>1as4_A Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A
{Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_A* 4caa_A 3caa_A
Length = 341
Score = 27.6 bits (62), Expect = 3.6
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 166 TDDLIFLWKEGDPVQVVKNLHLPRFTLEKFY 196
+ + W++ + + L+LP+F++ + Y
Sbjct: 250 LPETLKRWRDSLEFREIGELYLPKFSISRDY 280
>1yxa_A Serine (OR cysteine) proteinase inhibitor, clade 3N; serpin,
antichymotrypsin, protease inhibitor, reactive centr
plasma, hydrolase inhibitor; 2.10A {Mus musculus}
Length = 398
Score = 27.2 bits (61), Expect = 5.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 166 TDDLIFLWKEGDPVQVVKNLHLPRFTLEKFY 196
+ + WK +++ LHLP+F++ Y
Sbjct: 270 QPETLRKWKNSLKPRMIDELHLPKFSISTDY 300
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 11/44 (25%)
Query: 71 LYSIS---DLDNMRQCEVHMTV--------PQTPRKNCCRSWLA 103
LYSI+ D V + V K C ++L
Sbjct: 94 LYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLC 137
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 26.8 bits (60), Expect = 7.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 165 TTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFY 196
+ +E V ++LP+F +E
Sbjct: 252 KDPKALSRAEERLYNTEV-EIYLPKFKIETTT 282
>3le2_A Serpin-ZX; apoplast, glycoprotein, protease inhibitor, secreted,
serine protease inhibitor, hydrolase; 2.20A {Arabidopsis
thaliana}
Length = 393
Score = 26.5 bits (59), Expect = 7.6
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 165 TTDDLIFLWKEGDPVQVVKNLHLPRFTLEKFY 196
+T + V+V +P+F +
Sbjct: 258 STPGFLDNHIPRRQVKVR-EFKIPKFKFSFGF 288
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 26.4 bits (58), Expect = 8.8
Identities = 5/22 (22%), Positives = 6/22 (27%), Gaps = 4/22 (18%)
Query: 214 VDLLFKREFSYY----LIQIYY 231
D F Y L+Q
Sbjct: 43 ADAERASGFRYGHEDWLVQFKR 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.449
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,668,954
Number of extensions: 203252
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 54
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.9 bits)