RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1864
         (232 letters)



>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 1   EYSVQLTFREQWLDERLKYNDYDGRIKYLTLTEASRVWMPDLFFSNEKEGHFHNIIMPNV 60
           E  V    +  W D  L +N              S +W+PDL   N          +   
Sbjct: 48  EVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYNAISKPEV---LTPQ 102

Query: 61  YIRIHPQGSVLYS 73
             R+   G VLY 
Sbjct: 103 LARVVSDGEVLYM 115



 Score = 30.1 bits (67), Expect = 0.17
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 128 NLTYWSTISLTLSCPMNLKLYPLDRQSCSLKMASYGWTTDDLIFLWKEGDPVQVVKNLHL 187
            + Y  +I    SC ++  +      +C +K+ S+   + ++       +          
Sbjct: 111 EVLYMPSIRQRFSCDVSG-VDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQY 169

Query: 188 PRFTLEKFYTDYCNSKTNTGAYSC 211
            RF +          K N+  YSC
Sbjct: 170 SRFEILDV-----TQKKNSVTYSC 188


>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028)
           {Thermus thermophilus [TaxId: 274]}
          Length = 180

 Score = 24.5 bits (53), Expect = 9.2
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 217 LFKREFSYYLIQIYYY 232
           L +  F ++L Q Y +
Sbjct: 16  LDEERFRFWLQQDYPF 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 941,016
Number of extensions: 43360
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.1 bits)