BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1865
(152 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|189239160|ref|XP_971966.2| PREDICTED: similar to CG3756 CG3756-PA [Tribolium castaneum]
Length = 338
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/146 (63%), Positives = 110/146 (75%), Gaps = 5/146 (3%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E EQDTL+F LKIKCT + S S A+DMY+ + V++K I+WVPIG Q + + SDV
Sbjct: 128 EGTEQDTLEFALKIKCTNNKDSSKDSLRAEDMYKNNNVYSKHIKWVPIGKQKERF--SDV 185
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GPIH DILIAK+RPGHE+D+ + AVKS GRDHAKFSPVATAFYRLLP I L +E+EGE A
Sbjct: 186 GPIHPDILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGEAA 245
Query: 129 QRLQTMFSPGVISI--EKKPNAGVVA 152
+RLQ FSPGVISI EK VVA
Sbjct: 246 ERLQKCFSPGVISIRHEKGRKYAVVA 271
>gi|270010836|gb|EFA07284.1| hypothetical protein TcasGA2_TC014519 [Tribolium castaneum]
Length = 335
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/146 (63%), Positives = 110/146 (75%), Gaps = 5/146 (3%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E EQDTL+F LKIKCT + S S A+DMY+ + V++K I+WVPIG Q + + SDV
Sbjct: 125 EGTEQDTLEFALKIKCTNNKDSSKDSLRAEDMYKNNNVYSKHIKWVPIGKQKERF--SDV 182
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GPIH DILIAK+RPGHE+D+ + AVKS GRDHAKFSPVATAFYRLLP I L +E+EGE A
Sbjct: 183 GPIHPDILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGEAA 242
Query: 129 QRLQTMFSPGVISI--EKKPNAGVVA 152
+RLQ FSPGVISI EK VVA
Sbjct: 243 ERLQKCFSPGVISIRHEKGRKYAVVA 268
>gi|195035209|ref|XP_001989070.1| GH11517 [Drosophila grimshawi]
gi|193905070|gb|EDW03937.1| GH11517 [Drosophila grimshawi]
Length = 333
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+++LK+KCT+ + S+ DD+Y+ HKV++ ++W+P G QG +Y S V I
Sbjct: 127 EQDTLEYELKVKCTRRKDATKEQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYSESSVNCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPGHE+D+ + AVK IG+DHAKFSPVATAFYRLLP+ITLT+E+ G+ A L
Sbjct: 187 HDDILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAFYRLLPQITLTREVSGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q FSPGVI I++ A V
Sbjct: 247 QNCFSPGVIGIDENECAYV 265
>gi|242021511|ref|XP_002431188.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212516437|gb|EEB18450.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 347
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 100/134 (74%), Gaps = 1/134 (0%)
Query: 10 EPCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
EP EQDTL+F+LKIKC+ +S DD+Y H V++K ++WVPIGSQG Y ++
Sbjct: 125 EPNEQDTLEFELKIKCSVNKEGHKNSYQIDDLYINHSVYSKHLKWVPIGSQGTTYDEKNI 184
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GP+ DIL+ KLRPG E+D+ + AVK +G+DH KFSPVATAFYR+LP+IT+ +++ GE A
Sbjct: 185 GPVLPDILLNKLRPGQELDLKLHAVKGLGKDHTKFSPVATAFYRMLPEITMVKKVTGEAA 244
Query: 129 QRLQTMFSPGVISI 142
+RLQ FSPGVI I
Sbjct: 245 ERLQNCFSPGVIEI 258
>gi|225707230|gb|ACO09461.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Osmerus mordax]
Length = 351
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 15 DTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHD 73
DT+Q QLKIKCT++ + SS ++Y H V++KD++WVPIG+Q D++ +++GP+H
Sbjct: 141 DTIQLQLKIKCTRNPRAPKDSSDPRELYLNHMVYSKDMKWVPIGNQADVFADANIGPVHG 200
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DILIA+LRPG E+DV M VK IG+DHAKFSPVATA YRLLP+ITL + +EGE A+RL++
Sbjct: 201 DILIAQLRPGQELDVVMSCVKGIGKDHAKFSPVATASYRLLPEITLMETVEGEKAERLKS 260
Query: 134 MFSPGVISIEKKPNAGVVA 152
FSPGVI +E N V+A
Sbjct: 261 CFSPGVIELE-NCNGKVIA 278
>gi|195386486|ref|XP_002051935.1| GJ24400 [Drosophila virilis]
gi|194148392|gb|EDW64090.1| GJ24400 [Drosophila virilis]
Length = 333
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 107/139 (76%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+++LK+KCT+ S S+ DD+Y+ HKV++ ++W+P G QG +Y + VG I
Sbjct: 127 EQDTLEYELKVKCTRRKDASKDQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYTENSVGCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H+DILIA+LRPGHE+D+ + AVK +G+DHAKFSPVATA+YRLLP+I LT+E+ G+ A L
Sbjct: 187 HEDILIAQLRPGHELDLRLIAVKGLGKDHAKFSPVATAYYRLLPQINLTREVTGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q+ FSPGVI I++ A V
Sbjct: 247 QSCFSPGVIGIDENECAYV 265
>gi|195114368|ref|XP_002001739.1| GI17014 [Drosophila mojavensis]
gi|193912314|gb|EDW11181.1| GI17014 [Drosophila mojavensis]
Length = 333
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 105/139 (75%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+++LK+KCT+ S S+ DD+Y HKV++ ++W+P G Q +Y S VG I
Sbjct: 127 EQDTLEYELKVKCTRRKDASKDQSNFDDIYRNHKVYSGHLKWLPKGKQAQIYSESSVGCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H+DILIA+LRPGHE+D+ + AVK IG+DHAKFSPVATA+YRLLP+I LT+E+ G+ A L
Sbjct: 187 HEDILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAYYRLLPQINLTREVRGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q+ FSPGVI I++ A V
Sbjct: 247 QSCFSPGVIGIDENECAYV 265
>gi|449283222|gb|EMC89903.1| DNA-directed RNA polymerases I and III subunit RPAC1, partial
[Columba livia]
Length = 323
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQFQLKIKC+++ + SS +++Y HKV++K + WVP+G+Q D++ +D
Sbjct: 108 EGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADF 167
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA LRPG EIDV M VK IG+DHAKFSPVATA YRLLP ITL Q IE E A
Sbjct: 168 RPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEDEAA 227
Query: 129 QRLQTMFSPGVISIEK 144
+ LQ FSPGVI I+K
Sbjct: 228 ETLQKCFSPGVIEIQK 243
>gi|195437356|ref|XP_002066606.1| GK24584 [Drosophila willistoni]
gi|194162691|gb|EDW77592.1| GK24584 [Drosophila willistoni]
Length = 332
Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 105/139 (75%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+++LK+KCT+ S S D++Y+ HKVF+ ++W+P G QG +Y S VG I
Sbjct: 126 EQDTLEYELKVKCTRRKDASKDQSTFDEIYKNHKVFSGHLKWLPKGKQGQIYTESSVGCI 185
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H+DILIA+LRPGHE+D+ + AVK +G+DHAKFSPVATA+YRLLP I L +E+ G+ A L
Sbjct: 186 HEDILIAQLRPGHEMDLRLIAVKGLGKDHAKFSPVATAYYRLLPLIKLNREVSGKDAYLL 245
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q+ FSPGVI I++ NA V
Sbjct: 246 QSCFSPGVIGIDENENAYV 264
>gi|170033286|ref|XP_001844509.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
gi|167873916|gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
Length = 335
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 103/138 (74%), Gaps = 1/138 (0%)
Query: 14 QDTLQFQLKIKCTK-SASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
QDTL+F+LK+KCTK + + ++ D MY+ H +++ I+WVP+G+Q +YK +DVGPI
Sbjct: 130 QDTLEFELKVKCTKKNKDSTEVTNNDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPID 189
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDILI+++RPGHE D+ +FAVK +G+DHAKFSPVATA YRLLP+I L + + G A LQ
Sbjct: 190 DDILISRMRPGHEFDIKLFAVKGVGKDHAKFSPVATASYRLLPEIHLKRPVVGNQALLLQ 249
Query: 133 TMFSPGVISIEKKPNAGV 150
FSPGVI I+K A V
Sbjct: 250 KCFSPGVIEIDKDDQAYV 267
>gi|157116377|ref|XP_001658447.1| DNA-directed RNA polymerase [Aedes aegypti]
gi|108876498|gb|EAT40723.1| AAEL007568-PA [Aedes aegypti]
Length = 335
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P DTL+F+LK+KCTK S ++ D MY+ H +++ I+W+P+G+Q +YK +DVG
Sbjct: 127 PNALDTLEFELKVKCTKKNKDSTEITNNDSMYKNHSIYSGQIKWIPVGNQASIYKEADVG 186
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
PI DDILI+K+RPGHE D+ +FA+K IG+DHAKFSPVATA YRLLP++ LT+ + G A
Sbjct: 187 PIDDDILISKMRPGHEFDIKLFAMKGIGKDHAKFSPVATASYRLLPEVRLTRPVVGRDAL 246
Query: 130 RLQTMFSPGVISIEKKPNAGV 150
LQ FSPGVI I+K A V
Sbjct: 247 LLQKCFSPGVIEIDKDDQAYV 267
>gi|213513431|ref|NP_001134298.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
gi|209732188|gb|ACI66963.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
Length = 353
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 104/137 (75%), Gaps = 3/137 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
E E DT+Q QLKIKCT++ + S AD ++Y H V++KD++W PIG+Q D++ ++
Sbjct: 138 EGTEIDTIQLQLKIKCTRNPRATKDS-ADPRELYLNHMVYSKDMKWAPIGNQADVFADAN 196
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+GP+H DIL+A+LRPG E+D+ M VK IG+DHAKFSPVATA YRLLP+ITL + +EGE
Sbjct: 197 IGPVHGDILLAQLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMETVEGEK 256
Query: 128 AQRLQTMFSPGVISIEK 144
A+RL+ FSPGVI +E
Sbjct: 257 AERLKRCFSPGVIEVEN 273
>gi|224047705|ref|XP_002195566.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Taeniopygia guttata]
Length = 346
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQFQLKIKC ++ + SS D++Y HKV++K + WVP+G+Q D++ +D
Sbjct: 131 EGTEIDTLQFQLKIKCKRNPQAAKESSDPDELYFNHKVYSKHMTWVPLGNQTDLFPDADF 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA LRPG EIDV M VK IG+DHAKFSPVATA YRLLP ITL Q +E E A
Sbjct: 191 RPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ LQ FSPGVI I+
Sbjct: 251 ETLQKCFSPGVIEIQN 266
>gi|326915378|ref|XP_003203995.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Meleagris gallopavo]
Length = 266
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQFQLKIKC+++ + SS +++Y HKV++K + WVP+G+Q D++ +D
Sbjct: 51 EGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADF 110
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA LRPG EIDV M VK IG+DHAKFSPVATA YRLLP ITL Q IE E A
Sbjct: 111 RPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEDEAA 170
Query: 129 QRLQTMFSPGVISIEK 144
+ LQ FSPGVI I+
Sbjct: 171 ETLQKCFSPGVIEIQN 186
>gi|50740586|ref|XP_419502.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Gallus gallus]
Length = 346
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQFQLKIKC+++ + SS +++Y HKV++K + WVP+G+Q D++ +D
Sbjct: 131 EGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADF 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA LRPG EIDV M VK IG+DHAKFSPVATA YRLLP ITL Q +E E A
Sbjct: 191 RPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ LQ FSPGVI I+
Sbjct: 251 ETLQKCFSPGVIEIQN 266
>gi|289742757|gb|ADD20126.1| RNA polymerase I and III subunit rPA40/rPC40 [Glossina morsitans
morsitans]
Length = 330
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 102/138 (73%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
EQDTL F+LK+KC++ SS+ D +Y+ HK+++ I+W+P G Q +Y SDVGPI
Sbjct: 125 EQDTLDFELKVKCSRRKDVKESSNFDSIYKNHKIYSGQIKWLPKGKQAQIYSESDVGPID 184
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDILI ++RPGHE+D+ + AVK IG+DHAKFSPVATAFYRLLP++ L +++ G+ A LQ
Sbjct: 185 DDILITQMRPGHELDIRLAAVKGIGKDHAKFSPVATAFYRLLPEVKLKKDVVGKDAFLLQ 244
Query: 133 TMFSPGVISIEKKPNAGV 150
FSPGVI +++ A V
Sbjct: 245 KCFSPGVIGLDENDRAYV 262
>gi|348538459|ref|XP_003456708.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Oreochromis niloticus]
Length = 351
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 100/130 (76%), Gaps = 1/130 (0%)
Query: 15 DTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHD 73
DT+Q QLKIKC+++ S SS ++Y H V++KDI+WVPIG+Q D++ +GP+HD
Sbjct: 141 DTIQLQLKIKCSRNPRASKDSSDPRELYLNHMVYSKDIKWVPIGNQADVFADCCIGPVHD 200
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DILIA+LRPG E+D+ M VK IG+DHAKFSPVATA YRLLP+ITL + +EGE A+RL+
Sbjct: 201 DILIAQLRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLEVVEGEKAERLKQ 260
Query: 134 MFSPGVISIE 143
FS GVI +E
Sbjct: 261 CFSRGVIDLE 270
>gi|432957842|ref|XP_004085906.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Oryzias latipes]
Length = 264
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DT+Q QLKIKC+++ S SS ++Y H V++KDI WVP+G+Q D++ S +
Sbjct: 88 EASEIDTIQLQLKIKCSRNPRASKESSDPRELYLNHIVYSKDINWVPLGNQADVFADSRI 147
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
G +HDDI+IA+LRPG E+DV M VK IG+DHAKFSPVATA YRLLP ITL +++EGE A
Sbjct: 148 GAVHDDIVIAQLRPGQELDVVMHCVKGIGKDHAKFSPVATASYRLLPDITLMEQVEGEKA 207
Query: 129 QRLQTMFSPGVISIE 143
+RL+ FS GVI +E
Sbjct: 208 ERLKRCFSRGVIDLE 222
>gi|149069364|gb|EDM18805.1| RNA polymerase 1-1, isoform CRA_b [Rattus norvegicus]
Length = 291
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ S + SS +++Y HKV+T+ + WVP+G+Q D++ V
Sbjct: 76 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTV 135
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 136 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 195
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI++++
Sbjct: 196 EELSQCFSPGVIAVQE 211
>gi|126310054|ref|XP_001362696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Monodelphis domestica]
Length = 346
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/132 (57%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQFQLK+KCT++ + SS +++Y HKV+TK + W+P+G+Q D++ + P+
Sbjct: 134 EIDTLQFQLKVKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG E+D+ M VK IG+DHAKFSPVATA YRLLP ITL Q IEGE A+ L
Sbjct: 194 HDDILIAQLRPGQELDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEGEAAEEL 253
Query: 132 QTMFSPGVISIE 143
FSPGVI ++
Sbjct: 254 SQCFSPGVIQVQ 265
>gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus]
Length = 260
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ S + SS +++Y HKV+T+ + WVP+G+Q D++ V
Sbjct: 45 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTV 104
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 105 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 164
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI++++
Sbjct: 165 EELSQCFSPGVIAVQE 180
>gi|56605738|ref|NP_001008331.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Rattus
norvegicus]
gi|55778316|gb|AAH86597.1| Polymerase (RNA) I polypeptide C [Rattus norvegicus]
gi|149069363|gb|EDM18804.1| RNA polymerase 1-1, isoform CRA_a [Rattus norvegicus]
Length = 346
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ S + SS +++Y HKV+T+ + WVP+G+Q D++ V
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTV 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI++++
Sbjct: 251 EELSQCFSPGVIAVQE 266
>gi|41056007|ref|NP_956860.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Danio rerio]
gi|34193909|gb|AAH56581.1| Polymerase (RNA) I polypeptide C [Danio rerio]
Length = 347
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DT+Q QLK+KCT++ + SS ++Y H +++ DI+W+PIG+Q D++ + +
Sbjct: 132 EGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKI 191
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GP+H DIL+A++RPG E+D+ M VK IG+DHAKFSPVATA YRLLP+ITL Q IEGE A
Sbjct: 192 GPVHGDILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIEGEQA 251
Query: 129 QRLQTMFSPGVISIEK 144
+RL+ FSPGVI +E
Sbjct: 252 ERLKRCFSPGVIELEN 267
>gi|395534244|ref|XP_003769156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sarcophilus harrisii]
Length = 310
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQFQLK+KCT++ + SS +++Y HKV+TK + W+P+G+Q D++ + P+
Sbjct: 98 EIDTLQFQLKVKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPV 157
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG E+D+ M VK IG+DHAKFSPVATA YRLLP ITL Q +EGE A+ L
Sbjct: 158 HDDILIAQLRPGQELDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEGEAAEEL 217
Query: 132 QTMFSPGVISIE 143
FSPGVI ++
Sbjct: 218 SRCFSPGVIQVQ 229
>gi|575586|dbj|BAA06735.1| mouse RNA polymerase I 40kD subunit [Mus musculus]
Length = 355
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 140 EGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 199
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 200 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAA 259
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +E+
Sbjct: 260 EELSQCFSPGVIEVEE 275
>gi|120538451|gb|AAI30019.1| Polr1c protein [Mus musculus]
Length = 347
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 132 EGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 191
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 192 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAA 251
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +E+
Sbjct: 252 EELSQCFSPGVIEVEE 267
>gi|344253232|gb|EGW09336.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Cricetulus
griseus]
Length = 282
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CTK+ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 67 EGTEIDTLQFRLQVRCTKNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 126
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 127 RPVHDDILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 186
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 187 EELSRCFSPGVIEVQE 202
>gi|119226251|ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus]
gi|341942146|sp|P52432.3|RPAC1_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPC40
gi|74205031|dbj|BAE20986.1| unnamed protein product [Mus musculus]
gi|74226711|dbj|BAE27005.1| unnamed protein product [Mus musculus]
gi|148691536|gb|EDL23483.1| RNA polymerase 1-1, isoform CRA_a [Mus musculus]
Length = 346
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +E+
Sbjct: 251 EELSQCFSPGVIEVEE 266
>gi|354492493|ref|XP_003508382.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cricetulus griseus]
Length = 302
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CTK+ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 87 EGTEIDTLQFRLQVRCTKNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 146
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 147 RPVHDDILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 206
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 207 EELSRCFSPGVIEVQE 222
>gi|148691537|gb|EDL23484.1| RNA polymerase 1-1, isoform CRA_b [Mus musculus]
Length = 323
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 108 EGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 167
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 168 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAA 227
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +E+
Sbjct: 228 EELSQCFSPGVIEVEE 243
>gi|410929907|ref|XP_003978340.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Takifugu rubripes]
Length = 351
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DT+Q QLKI C+++ AS SS ++Y H V++KDI WVPIG+Q D++ + +
Sbjct: 136 EGSEIDTIQLQLKISCSRNPASSKDSSDPRELYLNHMVYSKDIHWVPIGNQADVFANCSI 195
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GP+H DILIA+LRPG E+D+ M +K IG+DHAKFSPVATA YRLLP+ITL + +EGE A
Sbjct: 196 GPVHGDILIAQLRPGQELDIIMHCIKGIGKDHAKFSPVATASYRLLPEITLLEPVEGEKA 255
Query: 129 QRLQTMFSPGVISIE 143
+RLQ F GVI +E
Sbjct: 256 ERLQRCFFRGVIDLE 270
>gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DT+Q QLK+KCT++ SS ++Y H +++ DI+W+PIG+Q D++ + +
Sbjct: 128 EGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKI 187
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GP+H DIL+A++RPG E+D+ M VK IG++HAKFSPVATA YRLLP+ITL Q IEGE A
Sbjct: 188 GPVHGDILLAQVRPGQELDIVMHCVKGIGKNHAKFSPVATASYRLLPEITLLQTIEGEQA 247
Query: 129 QRLQTMFSPGVISIEK 144
+RL+ FSPGVI +E
Sbjct: 248 ERLKRCFSPGVIELEN 263
>gi|194766065|ref|XP_001965145.1| GF21532 [Drosophila ananassae]
gi|190617755|gb|EDV33279.1| GF21532 [Drosophila ananassae]
Length = 333
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 103/138 (74%), Gaps = 1/138 (0%)
Query: 14 QDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
QDTL+F+LK+KCT+ + S+ DD+Y+ HKV++ ++W+P G Q +Y + VG IH
Sbjct: 128 QDTLEFELKVKCTRRKDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYTETGVGCIH 187
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP+I L +E+ G+ A LQ
Sbjct: 188 DDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKDAYLLQ 247
Query: 133 TMFSPGVISIEKKPNAGV 150
+ FSPGVI I++ A V
Sbjct: 248 SCFSPGVIGIDENECAYV 265
>gi|194856389|ref|XP_001968740.1| GG25034 [Drosophila erecta]
gi|190660607|gb|EDV57799.1| GG25034 [Drosophila erecta]
Length = 329
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+F+LK+KC++ + S+ DD+Y+ HKV++ ++W+P G Q +Y S V I
Sbjct: 123 EQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCI 182
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP+I L +E+ G+ A L
Sbjct: 183 HDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKDAYLL 242
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q+ FSPGVI I++ A V
Sbjct: 243 QSCFSPGVIGIDENETAYV 261
>gi|417409912|gb|JAA51445.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 347
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT+++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 132 EGTEIDTLQFRLQVRCTRNSHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDGTI 191
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 192 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 251
Query: 129 QRLQTMFSPGVISIEK 144
+ L+ FSPGVI + +
Sbjct: 252 EELRRCFSPGVIEVHE 267
>gi|149571084|ref|XP_001507416.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ornithorhynchus anatinus]
Length = 346
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 103/146 (70%), Gaps = 3/146 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQFQLK+KCT + S + SS + +Y HKV+TK + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFQLKVKCTWNPSAAKDSSDPNQLYLNHKVYTKHMTWVPLGNQADLFPEGAI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILI +LRPG E+D+ M VK +G+DHAKFSPV T YRLLP ITL Q +EGEMA
Sbjct: 191 RPVHDDILITQLRPGQELDLLMHYVKGVGKDHAKFSPVDTVSYRLLPDITLLQPVEGEMA 250
Query: 129 QRLQTMFSPGVISIE--KKPNAGVVA 152
++L+ FSPGVI I+ K VVA
Sbjct: 251 EKLKDCFSPGVIQIQEIKGKKVAVVA 276
>gi|417409648|gb|JAA51322.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 316
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT+++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 132 EGTEIDTLQFRLQVRCTRNSHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDGTI 191
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 192 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 251
Query: 129 QRLQTMFSPGVISIEK 144
+ L+ FSPGVI + +
Sbjct: 252 EELRRCFSPGVIEVHE 267
>gi|344264275|ref|XP_003404218.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Loxodonta africana]
Length = 306
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ S SS ++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 91 EGTEIDTLQFRLQVRCTRNPHASKDSSDPSELYVNHKVYTRHMTWVPLGNQADVFPEGTI 150
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 151 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 210
Query: 129 QRLQTMFSPGVISIEK 144
+ L+ FSPGVI +++
Sbjct: 211 EELRQCFSPGVIEVQE 226
>gi|355712707|gb|AES04439.1| polymerase I polypeptide C, 30kDa [Mustela putorius furo]
Length = 305
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 130 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 189
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 190 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 249
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 250 EELSRCFSPGVIEVQE 265
>gi|444725444|gb|ELW66008.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Tupaia
chinensis]
Length = 346
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|350586678|ref|XP_003482243.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sus scrofa]
Length = 346
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ S + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|301757344|ref|XP_002914512.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Ailuropoda melanoleuca]
gi|281345711|gb|EFB21295.1| hypothetical protein PANDA_002414 [Ailuropoda melanoleuca]
Length = 346
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGAI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|195472829|ref|XP_002088701.1| GE11271 [Drosophila yakuba]
gi|194174802|gb|EDW88413.1| GE11271 [Drosophila yakuba]
Length = 333
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 102/139 (73%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+F+LK+KC++ + S+ DD+Y+ HKV++ ++W+P G Q +Y S V I
Sbjct: 127 EQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYNESAVNCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP I L +E+ G+ A L
Sbjct: 187 HDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVSGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q+ FSPGVI I++ A V
Sbjct: 247 QSCFSPGVIGIDENETAYV 265
>gi|395832416|ref|XP_003789267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Otolemur garnettii]
Length = 346
Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMMWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLKPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSQCFSPGVIEVQE 266
>gi|403261372|ref|XP_003923097.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Saimiri boliviensis boliviensis]
Length = 346
Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYMNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|42560246|ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens]
gi|332824144|ref|XP_001136605.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Pan troglodytes]
gi|397526795|ref|XP_003833302.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pan paniscus]
gi|426353284|ref|XP_004044127.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Gorilla gorilla gorilla]
gi|3914807|sp|O15160.1|RPAC1_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPA39;
AltName: Full=RPC40
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit hRPA39 [Homo sapiens]
gi|14250788|gb|AAH08863.1| Polymerase (RNA) I polypeptide C, 30kDa [Homo sapiens]
gi|119624610|gb|EAX04205.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_b [Homo
sapiens]
gi|261858766|dbj|BAI45905.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|312152392|gb|ADQ32708.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|410212776|gb|JAA03607.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410248096|gb|JAA12015.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410296802|gb|JAA27001.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410337835|gb|JAA37864.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
Length = 346
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|332234165|ref|XP_003266281.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Nomascus leucogenys]
Length = 346
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|291396258|ref|XP_002714740.1| PREDICTED: RNA polymerase I subunit [Oryctolagus cuniculus]
Length = 358
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 143 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 202
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL IEGE A
Sbjct: 203 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLAPIEGEAA 262
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 263 EELSQCFSPGVIEVQE 278
>gi|410959240|ref|XP_003986220.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Felis catus]
Length = 346
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L+ FSPGVI +++
Sbjct: 251 EELRRCFSPGVIEVQE 266
>gi|125984360|ref|XP_001355944.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
gi|54644262|gb|EAL33003.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 104/139 (74%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+++LK+KCT+ S S+ DD+Y+ HKV++ ++W+P G Q +Y S V I
Sbjct: 127 EQDTLEYELKVKCTRRKDASKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESMVNCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H+DILIA+LRPGHE+D+ + AVK +G+DHAKFSPVATA+YRLLP+I L +E+ G+ A L
Sbjct: 187 HEDILIAQLRPGHELDLRLVAVKGLGKDHAKFSPVATAYYRLLPQIKLNREVYGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q+ FSPGVI I++ A V
Sbjct: 247 QSCFSPGVIGIDENECAYV 265
>gi|20129237|ref|NP_608885.1| CG3756 [Drosophila melanogaster]
gi|7296912|gb|AAF52185.1| CG3756 [Drosophila melanogaster]
gi|21429120|gb|AAM50279.1| LP03982p [Drosophila melanogaster]
Length = 333
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+F+LK+KC++ + S+ DD+Y+ HKV++ ++W+P G Q +Y S V I
Sbjct: 127 EQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP I L +E+ G+ A L
Sbjct: 187 HDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q FSPGVI I++ A V
Sbjct: 247 QNCFSPGVIGIDENETAYV 265
>gi|332824146|ref|XP_003311364.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Pan troglodytes]
Length = 342
Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|14198113|gb|AAH08118.1| POLR1C protein, partial [Homo sapiens]
Length = 338
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 123 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 182
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 183 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 242
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 243 EELSRCFSPGVIEVQE 258
>gi|3335138|gb|AAC39892.1| RNA polymerase I 40kD subunit [Homo sapiens]
gi|119624609|gb|EAX04204.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_a [Homo
sapiens]
Length = 342
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|431838337|gb|ELK00269.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pteropus
alecto]
Length = 346
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI + +
Sbjct: 251 EELSRCFSPGVIEVHE 266
>gi|296198261|ref|XP_002746623.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Callithrix jacchus]
Length = 346
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYMNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGV+ +++
Sbjct: 251 EELSRCFSPGVVEVQE 266
>gi|348576230|ref|XP_003473890.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cavia porcellus]
Length = 346
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSYCFSPGVIEVQE 266
>gi|195576648|ref|XP_002078187.1| GD23312 [Drosophila simulans]
gi|194190196|gb|EDX03772.1| GD23312 [Drosophila simulans]
Length = 333
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+F+LK+KC++ + S+ DD+Y+ HKV++ ++W+P G Q +Y S V I
Sbjct: 127 EQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCI 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP I L +E+ G+ A L
Sbjct: 187 HDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKDAYLL 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q FSPGVI I++ A V
Sbjct: 247 QNCFSPGVIGIDENETAYV 265
>gi|195342596|ref|XP_002037886.1| GM18508 [Drosophila sechellia]
gi|194132736|gb|EDW54304.1| GM18508 [Drosophila sechellia]
Length = 331
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
EQDTL+F+LK+KC++ + S+ DD+Y+ HKV++ ++W+P G Q +Y S V I
Sbjct: 125 EQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCI 184
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP I L +E+ G+ A L
Sbjct: 185 HDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKDAYLL 244
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q FSPGVI I++ A V
Sbjct: 245 QNCFSPGVIGIDENETAYV 263
>gi|37935546|gb|AAP69818.1| RNA polymerase subunit I [Bos taurus]
Length = 250
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQF+L+++CT++ + SS +++Y H+V+T+ + WVP+G+Q D++ + P+
Sbjct: 81 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPV 140
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 141 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 200
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 201 SRCFSPGVIEVQE 213
>gi|84000223|ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus]
gi|122143987|sp|Q32L22.1|RPAC1_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1
gi|81673907|gb|AAI09804.1| Polymerase (RNA) I polypeptide C, 30kDa [Bos taurus]
gi|296474425|tpg|DAA16540.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC1 [Bos
taurus]
Length = 346
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQF+L+++CT++ + SS +++Y H+V+T+ + WVP+G+Q D++ + P+
Sbjct: 134 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 194 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 253
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 254 SRCFSPGVIEVQE 266
>gi|297678210|ref|XP_002816974.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pongo abelii]
Length = 346
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+H+DILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHNDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|426250337|ref|XP_004018893.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ovis aries]
Length = 346
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQF+L+++CT++ + SS +++Y H+V+T+ + WVP+G+Q D++ + P+
Sbjct: 134 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 194 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 253
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 254 SRCFSPGVIEVQE 266
>gi|351707955|gb|EHB10874.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Heterocephalus glaber]
Length = 346
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGMI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+H+DILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE+A
Sbjct: 191 RPVHNDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEVA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSCCFSPGVIEVQE 266
>gi|297290919|ref|XP_001096103.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1,
partial [Macaca mulatta]
Length = 298
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTL+F+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ + P+
Sbjct: 86 EIDTLRFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPV 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 146 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 205
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 206 SRCFSPGVIEVQE 218
>gi|57094492|ref|XP_532147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Canis lupus familiaris]
Length = 346
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+++ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|355561732|gb|EHH18364.1| hypothetical protein EGK_14941 [Macaca mulatta]
gi|355763424|gb|EHH62170.1| hypothetical protein EGM_20381 [Macaca fascicularis]
gi|380818186|gb|AFE80967.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
gi|384950476|gb|AFI38843.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
Length = 346
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTL+F+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ + P+
Sbjct: 134 EIDTLRFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 194 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 253
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 254 SRCFSPGVIEVQE 266
>gi|149732228|ref|XP_001502091.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Equus caballus]
Length = 346
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS ++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPSELYVNHKVYTRHMIWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|405978280|gb|EKC42685.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Crassostrea
gigas]
Length = 472
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHD 73
+DT+ FQLK+KCTK++ ++ D+MY+ HKV TK ++W+P+ Q ++K D+ P++D
Sbjct: 131 EDTIIFQLKVKCTKNSQAKDTTDPDEMYKDHKVTTKHLKWIPMKGQDTIFKEGDLRPVND 190
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DILIAKLRPG EID+ +F K IG+DHAKFSPVATA YRLLP+I L + G +A++LQ+
Sbjct: 191 DILIAKLRPGQEIDIRVFCNKGIGKDHAKFSPVATASYRLLPEIYLKSPVTGALAEKLQS 250
Query: 134 MFSPGVISIEKKPNAGVVA 152
FSPGVI I+ + N VA
Sbjct: 251 CFSPGVIVIDTE-NGNKVA 268
>gi|335774431|gb|AEH58393.1| DNA-directed RNA polymerases I and III subuni RPAC1-like protein,
partial [Equus caballus]
Length = 267
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS ++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPSELYVNHKVYTRHMIWVPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>gi|402867078|ref|XP_003897695.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1 [Papio anubis]
Length = 346
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ + P+
Sbjct: 134 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG DHAK SPVATA YRLLP ITL + +EGE A+ L
Sbjct: 194 HDDILIAQLRPGQEIDLLMHCVKGIGNDHAKISPVATASYRLLPDITLLEPVEGEAAEEL 253
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 254 SRCFSPGVIEVQE 266
>gi|291230540|ref|XP_002735226.1| PREDICTED: polymerase (RNA) I polypeptide C, 30kDa-like, partial
[Saccoglossus kowalevskii]
Length = 202
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/135 (54%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E +DT++FQLK+KCT++ + ++ D+MY +V TKD++WVP G+QGD+Y D+
Sbjct: 3 EGTTEDTIEFQLKVKCTRNPHAPKDATDPDEMYRHWRVTTKDLKWVPFGNQGDIYSGDDI 62
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
+HDDILIAKLRPG EIDV + VK +G+DHAKFSPVATA YRLLP++ LT+ + GE A
Sbjct: 63 YSVHDDILIAKLRPGQEIDVKVHCVKGLGKDHAKFSPVATASYRLLPEMKLTKPVVGEQA 122
Query: 129 QRLQTMFSPGVISIE 143
+RL FSP VI ++
Sbjct: 123 ERLAKTFSPRVIEVQ 137
>gi|327262314|ref|XP_003215970.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Anolis carolinensis]
Length = 344
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 99/133 (74%), Gaps = 2/133 (1%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E +TLQFQLKIKC+++ SS +++Y HKV++K ++WVP+GSQ D + P+
Sbjct: 133 EINTLQFQLKIKCSRNPEAPKESSDPNELYINHKVYSKHMEWVPLGSQADNMNAG-FRPV 191
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EIDV M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A++L
Sbjct: 192 HDDILIAQLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLKPVEGETAEKL 251
Query: 132 QTMFSPGVISIEK 144
+ FS GVI +E+
Sbjct: 252 KKCFSSGVIEVEE 264
>gi|322783207|gb|EFZ10793.1| hypothetical protein SINV_03179 [Solenopsis invicta]
Length = 344
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 107/150 (71%), Gaps = 4/150 (2%)
Query: 4 NLRLKYEPCEQDTLQFQLKIKCTKSASFSHSSHA-DDMYEKHKVFTKDIQWVPIGSQGDM 62
N R E +QDTL+++LK+ CT + +SH +DMY+ KV++KDI+WVPIG QG+M
Sbjct: 117 NARADDEISDQDTLRYELKVTCTVNPQAPKNSHNPEDMYKNSKVYSKDIKWVPIGQQGEM 176
Query: 63 YK--SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
+ + + G + +DIL+ K+RPGHEI + M A+KSIG+DHAKFSPVATA YRLLP I LT
Sbjct: 177 FPRGAEEFGVLENDILLCKMRPGHEIHLFMHAIKSIGKDHAKFSPVATASYRLLPAIRLT 236
Query: 121 QEIEGEMAQRLQTMFSPGVISI-EKKPNAG 149
+ + + A LQ+ FSPGVI I E++ N G
Sbjct: 237 KPVRDKDADLLQSCFSPGVIEIVEQETNTG 266
>gi|147901420|ref|NP_001085237.1| polymerase (RNA) I polypeptide C, 30kDa [Xenopus laevis]
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L +KCT++ S S +++Y HKV+T ++W+P G+Q D++ +D
Sbjct: 131 EGTEIDTLQFELNVKCTRNPRASKDCSDPNELYLNHKVYTGHMKWLPQGNQVDLFPETDP 190
Query: 69 -GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
P+H DILIA+LRPG EI+V M VK IG+DHAKFSPVATA YRLLP++TL IEGE+
Sbjct: 191 PRPVHKDILIAQLRPGQEINVIMHCVKGIGKDHAKFSPVATASYRLLPEVTLLSSIEGEL 250
Query: 128 AQRLQTMFSPGVISIEK 144
A +LQ FSPGVIS+++
Sbjct: 251 ADKLQGCFSPGVISVDE 267
>gi|301626012|ref|XP_002942192.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Xenopus (Silurana) tropicalis]
Length = 347
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 99/137 (72%), Gaps = 2/137 (1%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L +KCT++ S S +++Y HKV+T ++W+P G+Q D++ +D
Sbjct: 131 EGTEIDTLQFELNVKCTRNPRASKDCSDPNELYLNHKVYTSHMKWLPQGNQSDLFPETDP 190
Query: 69 -GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
P+H DILIA+LRPG EI V M VK IG+DHAKFSPVATA YRLLP+ITL IEGE+
Sbjct: 191 PRPVHGDILIAQLRPGQEISVIMHCVKGIGKDHAKFSPVATASYRLLPEITLLCPIEGEL 250
Query: 128 AQRLQTMFSPGVISIEK 144
A RLQ FSPGVI +++
Sbjct: 251 ADRLQRCFSPGVIGVDE 267
>gi|339521959|gb|AEJ84144.1| Polr1c protein [Capra hircus]
Length = 346
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 97/133 (72%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQF+L+++CT++ + SS +++Y H+V+T+ + WVP+GSQ ++ + P+
Sbjct: 134 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGSQAALFPEGAIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EG + L
Sbjct: 194 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGGAGEEL 253
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 254 SRCFSPGVIEVQE 266
>gi|321465930|gb|EFX76928.1| hypothetical protein DAPPUDRAFT_213644 [Daphnia pulex]
Length = 353
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 97/130 (74%), Gaps = 1/130 (0%)
Query: 14 QDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DTL+F+LK+KC+ + + ++ + +Y +V T ++W+P+G Q D++ VGP+
Sbjct: 143 EDTLEFELKVKCSWNPQRTKDHTNPEHLYRDFRVLTSHLKWMPLGGQKDIFTPDAVGPVD 202
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
D ILIAK+RPGHE+D+ + A+K GR+HAKFSPVATAFYRLLP++ L +E+EGE AQRLQ
Sbjct: 203 DKILIAKMRPGHELDIKLHAMKGTGREHAKFSPVATAFYRLLPQVKLLKEVEGEAAQRLQ 262
Query: 133 TMFSPGVISI 142
FSPGVI +
Sbjct: 263 KCFSPGVIDL 272
>gi|440902447|gb|ELR53239.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos grunniens
mutus]
Length = 343
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
E DTLQF+L+++CT++ + S D E + ++T+ + WVP+G+Q D++ + P+H
Sbjct: 134 EIDTLQFRLQVRCTRNPHAAKDS--SDPNELYVMYTRHMTWVPLGNQADLFPEGAIRPVH 191
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 192 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELS 251
Query: 133 TMFSPGVISIEK 144
FSPGVI +++
Sbjct: 252 RCFSPGVIEVQE 263
>gi|390348474|ref|XP_795508.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Strongylocentrotus purpuratus]
Length = 350
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 99/133 (74%), Gaps = 1/133 (0%)
Query: 14 QDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DT++FQLK+KCTK+ + S ++ D++Y+ KV T+ +W+P+ +Q + Y P++
Sbjct: 135 EDTIEFQLKVKCTKNPNASKDATDPDELYKNAKVTTEHFKWIPLENQEETYGPKAFAPVN 194
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG EID+ M VK IG+DHAKFSPVATA YRL+P+I LT++I GE A++LQ
Sbjct: 195 KDILIAKLRPGQEIDLKMHCVKGIGKDHAKFSPVATASYRLMPEIILTEDIVGERAKKLQ 254
Query: 133 TMFSPGVISIEKK 145
FS GVI +EK+
Sbjct: 255 QCFSSGVIDVEKR 267
>gi|198427484|ref|XP_002120101.1| PREDICTED: similar to RNA polymerase 1-1 [Ciona intestinalis]
Length = 345
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 99/136 (72%), Gaps = 4/136 (2%)
Query: 14 QDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DTL+F+L IKCTK+ S ++ D +Y+ HKV++KDI+W+P+G+Q D+ V P++
Sbjct: 132 EDTLEFELNIKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIPLGNQKDLLT---VKPVY 188
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDIL+AKLRPGH +DV + AVK +G+DHAKFSPVATA YRLLP+I L +I A+ LQ
Sbjct: 189 DDILVAKLRPGHILDVKLHAVKGVGQDHAKFSPVATASYRLLPQIRLLDQILNSDAEDLQ 248
Query: 133 TMFSPGVISIEKKPNA 148
F+PGVI + + N
Sbjct: 249 RCFAPGVIEVYRNKNG 264
>gi|340722889|ref|XP_003399833.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus terrestris]
Length = 505
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Query: 10 EPCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK--SS 66
E +QDTL+++LK+ CT + S +DMY V++KDI+WVPIG Q ++Y +
Sbjct: 127 EVSDQDTLRYELKVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPIGRQAEIYPRGAE 186
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+G + DDILI K+RPG EI V M AVK IG+DHAKFSPVATA YRLLP I L + + GE
Sbjct: 187 QLGVLEDDILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLLPDIQLVKSVRGE 246
Query: 127 MAQRLQTMFSPGVIS-IEKKP 146
MA RL++ FS GVI IE KP
Sbjct: 247 MADRLKSCFSIGVIEVIETKP 267
>gi|350403568|ref|XP_003486838.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus impatiens]
Length = 505
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Query: 10 EPCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK--SS 66
E +QDTL+++LK+ CT + S +DMY V++KDI+WVPIG Q ++Y +
Sbjct: 127 EVSDQDTLRYELKVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPIGRQAELYPRGAE 186
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+G + DDILI K+RPG EI V M AVK IG+DHAKFSPVATA YRLLP I L + + GE
Sbjct: 187 QLGVLEDDILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLLPDIQLVKPVRGE 246
Query: 127 MAQRLQTMFSPGVIS-IEKKP 146
MA RL++ FS GVI IE KP
Sbjct: 247 MADRLKSCFSIGVIEVIETKP 267
>gi|443702676|gb|ELU00597.1| hypothetical protein CAPTEDRAFT_171865 [Capitella teleta]
Length = 349
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Query: 14 QDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DTL F+LK+KCT + + + H++ D+++ HKV T+D++W+P G+Q +++K S + P+
Sbjct: 131 EDTLVFELKVKCTMNKNATEHATDPDELFINHKVTTRDMKWIPKGNQQELFKDS-ICPVQ 189
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDILIAKLRPG EID+ M VK +G+DHAKFSPVATA YRL+P I LT+ GE A++L
Sbjct: 190 DDILIAKLRPGQEIDIEMHCVKGLGQDHAKFSPVATASYRLMPVIELTRPYLGEEAEQLA 249
Query: 133 TMFSPGVISIEK 144
F+PGVI +E+
Sbjct: 250 ACFAPGVILVEE 261
>gi|225716742|gb|ACO14217.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 263
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 94/129 (72%), Gaps = 1/129 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DT+Q QLKIKCT++ + S+ ++Y H V++KD+ WVPIG+Q D+ +++
Sbjct: 132 EGTEIDTIQLQLKIKCTRNHQATKDSADPQELYLNHMVYSKDMTWVPIGNQADVVADANI 191
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GP+H DIL+AKLRPG E+D+ M VK IG+DHAKFSPVATA YRLLP+ITL + +EG +
Sbjct: 192 GPVHGDILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKTVEGGES 251
Query: 129 QRLQTMFSP 137
+ +T+ P
Sbjct: 252 RASETLLLP 260
>gi|380022855|ref|XP_003695251.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1-like [Apis florea]
Length = 587
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Query: 10 EPCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK--SS 66
E +QDTL+++LKI CT S + S +DMY V+++DI+WVPIG Q ++Y +
Sbjct: 127 EVSDQDTLRYELKISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWVPIGHQAELYPRGTE 186
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+G + +DILI K+RPG EI M AVK IG+DHAKFSPVATA YRLLP I + + ++GE
Sbjct: 187 QLGVLENDILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPDIQIIKPVKGE 246
Query: 127 MAQRLQTMFSPGVIS-IEKKP 146
MA RL+ FS GVI IE KP
Sbjct: 247 MADRLKNCFSIGVIEVIENKP 267
>gi|346464743|gb|AEO32216.1| hypothetical protein [Amblyomma maculatum]
Length = 340
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Query: 14 QDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DT++F+LK+KCTK+ + ++ D++Y+ H V+TK ++W+P+GSQ +++ + P+H
Sbjct: 131 EDTVEFELKVKCTKNPHAPKDATVPDELYKDHVVYTKHLKWIPLGSQVEIFGNKPPKPVH 190
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDI++AKLRPG EID+ + +K G+ HAKFSPVATA YRLLP+I L + + E A+RLQ
Sbjct: 191 DDIILAKLRPGQEIDLKLHCLKGTGQVHAKFSPVATASYRLLPEIRLLRPVLDEQAERLQ 250
Query: 133 TMFSPGVISIEKKPNAGVVA 152
T FS GVI +++ P+ VA
Sbjct: 251 TCFSNGVIELDETPDGHKVA 270
>gi|307181041|gb|EFN68815.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Camponotus
floridanus]
Length = 344
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 10 EPCEQDTLQFQLKIKCTK-SASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK--SS 66
E EQDTL+++LK+ CT + +S +DMY KV++KDI+WVPIG QGDM+ +
Sbjct: 123 EVSEQDTLKYELKVTCTTHPQAPKYSRLPEDMYRNSKVYSKDIKWVPIGRQGDMFPHGTE 182
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ +DILI K+RPGHEI M AVK IG+DHAKFSPVA A YRL+P I LT+ + E
Sbjct: 183 QFSVLENDILICKMRPGHEIHAFMHAVKGIGKDHAKFSPVAPARYRLMPAIELTKPVRNE 242
Query: 127 MAQRLQTMFSPGVIS-IEKKPNAG 149
A LQ+ FSP VI +EK+ ++G
Sbjct: 243 DADLLQSCFSPAVIEVVEKETSSG 266
>gi|427788233|gb|JAA59568.1| Putative rna polymerase i and iii subunit [Rhipicephalus
pulchellus]
Length = 344
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 14 QDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DT++F+LK+KCTK+ ++ D++Y+ H V+TK + W P+GSQ +++ + P+H
Sbjct: 131 EDTVEFELKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVH 190
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDI++AKLRPG EID+ + VK G+ HAKFSPVATA YRLLP+I L + + E A+RLQ
Sbjct: 191 DDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQAERLQ 250
Query: 133 TMFSPGVISIEKKPNAGVVA 152
FS GVI ++++P+ VA
Sbjct: 251 GCFSKGVIELDEEPDGHKVA 270
>gi|427798089|gb|JAA64496.1| Putative rna polymerase i and iii subunit, partial [Rhipicephalus
pulchellus]
Length = 445
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 14 QDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DT++F+LK+KCTK+ + ++ D++Y+ H V+TK + W P+GSQ +++ + P+H
Sbjct: 253 EDTVEFELKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVH 312
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDI++AKLRPG EID+ + VK G+ HAKFSPVATA YRLLP+I L + + E A+RLQ
Sbjct: 313 DDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQAERLQ 372
Query: 133 TMFSPGVISIEKKPNAGVVA 152
FS GVI ++ +P+ VA
Sbjct: 373 GCFSKGVIELDDEPDGHKVA 392
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 14 QDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+DT++F+LK+KCTK+ + ++ D++Y+ H V+TK + W P+GSQ +++ + P+H
Sbjct: 131 EDTVEFELKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVH 190
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDI++AKLRPG EID+ + VK G+ HAKFSPVATA YRLLP+I L + + E A+RLQ
Sbjct: 191 DDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQAERLQ 250
>gi|328785531|ref|XP_625072.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Apis mellifera]
Length = 510
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 96/141 (68%), Gaps = 4/141 (2%)
Query: 10 EPCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK--SS 66
E +QDTL+++LKI CT S + S +DMY V+++DI+WVPIG Q ++Y +
Sbjct: 127 EVSDQDTLRYELKISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWVPIGHQAELYPRGTE 186
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ + +DILI K+RPG EI M AVK IG+DHAKFSPVATA YRLLP I + + ++GE
Sbjct: 187 QLSVLENDILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPDIQIIKPVKGE 246
Query: 127 MAQRLQTMFSPGVIS-IEKKP 146
MA RL+ FS GVI IE KP
Sbjct: 247 MADRLKNCFSIGVIEVIENKP 267
>gi|383850329|ref|XP_003700748.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Megachile rotundata]
Length = 509
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 94/141 (66%), Gaps = 4/141 (2%)
Query: 10 EPCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK--SS 66
E +QDTL+++LK+ CT + S DMY V++KDI+WVPIG Q ++Y +
Sbjct: 126 EVSDQDTLRYELKVTCTWNPQAPKDSRRITDMYRNSNVYSKDIKWVPIGRQAELYPRGTE 185
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+G + +DILI K+RPG EI M A+K IG+DHAKFSPVATA YRLLP I L + + GE
Sbjct: 186 QLGVLENDILICKMRPGQEIHAFMHAIKGIGKDHAKFSPVATASYRLLPDIQLIKPVRGE 245
Query: 127 MAQRLQTMFSPGVIS-IEKKP 146
MA RL+ FS GVI IE KP
Sbjct: 246 MADRLKNCFSIGVIEVIENKP 266
>gi|241730129|ref|XP_002412264.1| transferase, putative [Ixodes scapularis]
gi|215505503|gb|EEC14997.1| transferase, putative [Ixodes scapularis]
gi|442748497|gb|JAA66408.1| Putative rna polymerase i and iii subunit [Ixodes ricinus]
Length = 344
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E +DT++F+LK+KCT++ ++ D++Y+ H V+T+ + W PIGSQ +++ +
Sbjct: 127 EGSPEDTVEFELKVKCTRNPQAPKDATTPDELYKDHVVYTRHLTWTPIGSQAEIFGNKPP 186
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++DDI++AKLRPG EID+ + +K G+DHAKFSPVATA YRLLP+I L +E+ E A
Sbjct: 187 KPVYDDIILAKLRPGQEIDLKLHCMKGTGQDHAKFSPVATASYRLLPEIVLLREVRDEQA 246
Query: 129 QRLQTMFSPGVISIEKKPNAGVVA 152
+RLQ F+ GVI +++ + VA
Sbjct: 247 ERLQGCFAKGVIELDETDDGHKVA 270
>gi|340375977|ref|XP_003386510.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Amphimedon queenslandica]
Length = 346
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
Query: 14 QDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
Q L+F+LK+KC+++ + S S +++Y HKV + D++WVPI Q ++ D+ P+
Sbjct: 136 QHMLEFKLKVKCSRNVNAPSDSEDPNELYISHKVTSGDMKWVPIEDQSQLFSVHDIRPVD 195
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG EID+ + VK IG+DHAKFSPVATA YRLLP+ITLT+ + G A++L
Sbjct: 196 KDILIAKLRPGQEIDLRLICVKGIGKDHAKFSPVATASYRLLPEITLTKPVVGPAAEKLA 255
Query: 133 TMFSPGVISIE 143
+ FS GVI ++
Sbjct: 256 SCFSKGVIRVQ 266
>gi|341897190|gb|EGT53125.1| hypothetical protein CAEBREN_31421 [Caenorhabditis brenneri]
Length = 365
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 95/137 (69%), Gaps = 2/137 (1%)
Query: 16 TLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMY-KSSDVGPIHD 73
L F++ + CTK+ + ++ ++ +Y V+++ +W+PIG+Q + Y K++ + D
Sbjct: 156 NLIFKINVACTKNRNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTKNNKPKMVSD 215
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DIL+AKLRPG EI+ + AVK IGRDHAKFSPVATA YRLLP I L EI GE A+RLQ+
Sbjct: 216 DILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLQS 275
Query: 134 MFSPGVISIEKKPNAGV 150
+FS GVI IEKK N +
Sbjct: 276 VFSEGVIGIEKKGNKKI 292
>gi|57965352|ref|XP_561116.1| Anopheles gambiae str. PEST AGAP012796-PA [Anopheles gambiae str.
PEST]
gi|55247027|gb|EAL42262.1| AGAP012796-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 11 PCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P DTL+F+LK+KCT K+ + ++ ++MY+ H +++ I+WVPIG+Q +Y + VG
Sbjct: 123 PSALDTLEFELKVKCTRKNKDSTEVTNNENMYKNHSIYSGQIKWVPIGNQATIYTEATVG 182
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
PI DDILI+K+RPGHE D+ +FAVK +G+DHAKFSPVAT YRLLP I L +
Sbjct: 183 PIDDDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNR 234
>gi|341888283|gb|EGT44218.1| hypothetical protein CAEBREN_24695 [Caenorhabditis brenneri]
Length = 365
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Query: 16 TLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMY-KSSDVGPIHD 73
L F++ + CTK+ + ++ ++ +Y V+++ +W+PIG+Q + Y K + + D
Sbjct: 156 NLIFKINVACTKNRNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTKQNKPKMVSD 215
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DIL+AKLRPG EI+ + AVK IGRDHAKFSPVATA YRLLP I L EI GE A+RLQ+
Sbjct: 216 DILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLQS 275
Query: 134 MFSPGVISIEKKPNAGV 150
+FS GVI IEKK N +
Sbjct: 276 VFSEGVIGIEKKGNKKI 292
>gi|158293560|ref|XP_314897.4| AGAP008771-PA [Anopheles gambiae str. PEST]
gi|157016767|gb|EAA10097.5| AGAP008771-PA [Anopheles gambiae str. PEST]
Length = 261
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 11 PCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P DTL+F+LK+KCT K+ + ++ ++MY+ H +++ I+WVPIG+Q +Y + VG
Sbjct: 89 PSALDTLEFELKVKCTRKNKDSTEVTNNENMYKNHSIYSGQIKWVPIGNQATIYTEAAVG 148
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
PI DDILI+K+RPGHE D+ +FAVK +G+DHAKFSPVAT YRLLP I L +
Sbjct: 149 PIDDDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNR 200
>gi|268556380|ref|XP_002636179.1| Hypothetical protein CBG01436 [Caenorhabditis briggsae]
Length = 367
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
Query: 17 LQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP-IHDD 74
L F++ + CTK+ + ++ +Y V+++ +WVPIG Q Y +V + DD
Sbjct: 159 LIFKINVTCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIGKQSGNYDKKNVPKMVSDD 218
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTM 134
IL+AKLRPG EI+ + AVK IGRDHAKFSPVATA YRLLP I L EI GE A+RLQ++
Sbjct: 219 ILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLQSV 278
Query: 135 FSPGVISIEKK 145
FS GVI IEKK
Sbjct: 279 FSEGVIGIEKK 289
>gi|307206448|gb|EFN84486.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Harpegnathos
saltator]
Length = 390
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 100/150 (66%), Gaps = 4/150 (2%)
Query: 4 NLRLKYEPCEQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDM 62
N R E +QDTL+++LK+ CTK+ S S +++Y+ V++KDI+WVPIG Q +M
Sbjct: 133 NGRKDDEVSDQDTLRYELKVACTKNPQKSQDSQLPEEIYKNSSVYSKDIKWVPIGRQAEM 192
Query: 63 YK--SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
+ + +G + +DILI+K+RPGHEI V M A K I +DHAK+SP++ A YRLLP I L
Sbjct: 193 FPNGAEQLGVLENDILISKMRPGHEIHVYMHAFKGISKDHAKYSPLSIATYRLLPNIELL 252
Query: 121 QEIEGEMAQRLQTMFSPGVIS-IEKKPNAG 149
+ G+ A L++ FSPGVI +E+K G
Sbjct: 253 TPVTGKKADLLKSCFSPGVIEVVERKTEEG 282
>gi|320165910|gb|EFW42809.1| polymerase I polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 414
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 4/143 (2%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++TL F L +KCTK+ S ++ D + Y +V + DI WVP G Q ++ + + P+
Sbjct: 197 DRNTLVFTLDVKCTKNPHASPNATDDTEKYINSRVLSSDIVWVPKGDQEAQFQDAPIAPV 256
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIAKLRPG + M +KSIGRDHAKFSPV TA YRLLP+I LT+ + G+ A L
Sbjct: 257 HDDILIAKLRPGQAVACEMHCIKSIGRDHAKFSPVGTASYRLLPEIILTRPVTGDDAYLL 316
Query: 132 QTMFSPGVISIEKK---PNAGVV 151
Q FSPG I + + P A V+
Sbjct: 317 QKCFSPGTIGVRNENGVPTAYVI 339
>gi|118088012|ref|XP_001234462.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Gallus gallus]
Length = 300
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 78/102 (76%)
Query: 43 KHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
+++V++K + WVP+G+Q D++ +D P+HDDILIA LRPG EIDV M VK IG+DHAK
Sbjct: 119 RNQVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAK 178
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEK 144
FSPVATA YRLLP ITL Q +E E A+ LQ FSPGVI I+
Sbjct: 179 FSPVATASYRLLPDITLLQPVEDEAAETLQKCFSPGVIEIQN 220
>gi|345492750|ref|XP_003426918.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Nasonia vitripennis]
Length = 345
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD- 67
E +QDTL++++K C + + S DD+Y + V++KDI+W PIG Q ++Y +
Sbjct: 130 EVSDQDTLRYEIKAICKWNPHAPKDSRRPDDIYCGNNVYSKDIKWNPIGRQNELYPDGEK 189
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
G I DDILI K+RP EI M AVK IG+DHAKFSPVATA YRLLP+I + + + GE
Sbjct: 190 QFGMIADDILICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPEIQIIKPVRGE 249
Query: 127 MAQRLQTMFSPGVISI 142
A+R ++ FSPGVI I
Sbjct: 250 AAERFKSCFSPGVIEI 265
>gi|308508009|ref|XP_003116188.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
gi|308251132|gb|EFO95084.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
Length = 366
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 86/132 (65%), Gaps = 2/132 (1%)
Query: 16 TLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP-IHD 73
L F++ + CTK+ + +S+ +Y V++ WVPIG Q Y S + D
Sbjct: 157 NLIFKINVSCTKNRNALPNSTDPKTLYHHSSVYSGSFAWVPIGDQKSNYTDSTTPRMVTD 216
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DIL+AKLRPG EI+ + AVK IGRDHAKFSPVATA YRLLP I L EI GE A+RL++
Sbjct: 217 DILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEITGEAAERLKS 276
Query: 134 MFSPGVISIEKK 145
+FS GVI IEKK
Sbjct: 277 VFSEGVIEIEKK 288
>gi|193704512|ref|XP_001945905.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Acyrthosiphon pisum]
Length = 325
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
EP E D+L +++KIKCTK + A + V+ K I+W+P+G+Q D++ DVG
Sbjct: 114 EPNEHDSLVYEMKIKCTKK---DLDALAHKQFISFPVYAKHIKWLPLGNQKDIFTEKDVG 170
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
I DDILIAKLRPG EI++ MFAVK I +DHAKF V TA+YR++P I L EI+G A
Sbjct: 171 IISDDILIAKLRPGQEIELKMFAVKGIPKDHAKFQSVCTAWYRMMPNIKLLDEIKGNDAV 230
Query: 130 RLQTMFSPGVISIE 143
LQ+ F GVI ++
Sbjct: 231 LLQSCFPKGVIGLK 244
>gi|391342311|ref|XP_003745464.1| PREDICTED: uncharacterized protein LOC100901074 [Metaseiulus
occidentalis]
Length = 684
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 14 QDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
QDT+ F+L I+CTK+ + S+ D+Y V++ + WVP+ Q ++ + PIH
Sbjct: 465 QDTVVFELHIRCTKNLQAAQDSTLPKDIYSNSSVYSGHLTWVPLEGQEMLFAKNPPKPIH 524
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDILIAKLRPG EID+ + +K IG+ HAKFSPVATA YRLLP I + +++ GE A+RL+
Sbjct: 525 DDILIAKLRPGQEIDMKIEYLKGIGKTHAKFSPVATASYRLLPVIEILEDVCGEAARRLK 584
Query: 133 TMFSPGVISIEKKPNAGV 150
FS GV+ IEK+ V
Sbjct: 585 NSFSKGVVEIEKRNGVDV 602
>gi|449662625|ref|XP_002166070.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Hydra magnipapillata]
Length = 354
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Query: 13 EQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E L F+LKIKC+K+ + S ++ D +Y +KV TK ++W+PIG Q + + ++ V P+
Sbjct: 143 EHHHLVFELKIKCSKNPKASSDATDPDVLYLNNKVMTKHMKWIPIGRQAEKFSTNIVRPV 202
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DDILIAKLRPG E+D+ M VK IG+DHAKFSPVATA YRLL +ITL + GE+A+ L
Sbjct: 203 FDDILIAKLRPGQELDIRMHCVKGIGKDHAKFSPVATASYRLLREITLLTPVVGELAETL 262
Query: 132 QTMFSPGV 139
F GV
Sbjct: 263 AKCFFKGV 270
>gi|302693813|ref|XP_003036585.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
gi|300110282|gb|EFJ01683.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
Length = 354
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 96/143 (67%), Gaps = 3/143 (2%)
Query: 11 PCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P ++DT+ F L + CT KS S ++++ +D+Y+ H+V + ++W P+G Q +++ +
Sbjct: 124 PTDRDTIIFDLAVACTRKSHSSANATEPEDLYDNHEVLSSHLKWRPVGEQEEVFANKPPA 183
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P + +I++AKLRPG + + + AVK +G+DHAKFSPVATA YRLLP I + + I E+A
Sbjct: 184 PTNPNIVLAKLRPGQAVHMELHAVKGVGKDHAKFSPVATASYRLLPHIKIKKPIPPELAD 243
Query: 130 RLQTMFSPGVISIEKKPNAGVVA 152
+ Q FSPGVI ++ PN V+
Sbjct: 244 KFQKCFSPGVIRVD--PNTKAVS 264
>gi|25155095|ref|NP_504166.2| Protein RPAC-40 [Caenorhabditis elegans]
gi|351060931|emb|CCD68663.1| Protein RPAC-40 [Caenorhabditis elegans]
Length = 366
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 4/133 (3%)
Query: 16 TLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP--IH 72
L F++ + CTK+ + ++ +Y V+++ +WVPI Q + + + P +
Sbjct: 157 NLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQF-TEEAHPRMVS 215
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDIL+AKLRPG EI+ + AVK IGRDHAKFSPVATA YRLLP I L EI GE A+RL+
Sbjct: 216 DDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLK 275
Query: 133 TMFSPGVISIEKK 145
++FS GVI+IEKK
Sbjct: 276 SVFSEGVIAIEKK 288
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans
Length = 697
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 4/133 (3%)
Query: 16 TLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP--IH 72
L F++ + CTK+ + ++ +Y V+++ +WVPI Q + + + P +
Sbjct: 488 NLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQF-TEEAHPRMVS 546
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDIL+AKLRPG EI+ + AVK IGRDHAKFSPVATA YRLLP I L EI GE A+RL+
Sbjct: 547 DDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLK 606
Query: 133 TMFSPGVISIEKK 145
++FS GVI+IEKK
Sbjct: 607 SVFSEGVIAIEKK 619
>gi|299750875|ref|XP_001829899.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
gi|298409112|gb|EAU91821.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
Length = 383
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
+P ++DTL F+L + CT++ + S++ D++Y H+V ++D+ W P+G Q ++++
Sbjct: 166 DPTDRDTLIFKLDVTCTRNPNAPKGSTNPDELYINHEVLSRDLVWSPVGQQAEVFEGCPP 225
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
PI+ +I++ KLRPG +++ + AVK +G+DHAKF+PVATA YRLLP I + + I E A
Sbjct: 226 APINPNIVLTKLRPGQAVNMELHAVKGVGKDHAKFTPVATASYRLLPHIKIKKPIPPEHA 285
Query: 129 QRLQTMFSPGVISIEKK 145
++ FSPGVI ++ +
Sbjct: 286 EKFAKCFSPGVIKVDPQ 302
>gi|357612390|gb|EHJ67960.1| DNA-directed RNA polymerase [Danaus plexippus]
Length = 322
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 11/142 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTL+F LKIKCT + S A+D+YE H V++ I+W PIG+Q ++K +DV
Sbjct: 122 EGTEFDTLEFSLKIKCTNNKYGPKDSFRAEDLYENHSVYSSSIKWHPIGNQASIHKEADV 181
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
GP+ DDILI+K+RPGHE+D M V I TA YRLLP++TLT+E++G A
Sbjct: 182 GPVDDDILISKMRPGHELD--MHLVVHIFD--------TTASYRLLPEVTLTREVDGSEA 231
Query: 129 QRLQTMFSPGVISIEKKPNAGV 150
LQ+ FSPGVI ++ A V
Sbjct: 232 TLLQSCFSPGVIGLDSDGKAFV 253
>gi|58266722|ref|XP_570517.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110920|ref|XP_775924.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226750|gb|AAW43210.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 350
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
+P E DT+ F L+++C + + S + MY V++ ++WVP G Q +K
Sbjct: 129 QPHEHDTVVFDLRVRCDRRPNVDRSETDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAP 188
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++DDIL+ KLRPG ++D+ FA K +G DHAKFSPVATA YRLLP I L I E
Sbjct: 189 RPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQ 248
Query: 129 QRLQTMFSPGVISIEKKPNA 148
Q+ + F PGVI IEK N
Sbjct: 249 QKFKGCFPPGVIEIEKDENG 268
>gi|350297001|gb|EGZ77978.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2509]
Length = 378
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
PC+ +T++ +LK+KC + S + S ++Y V+ KDI++VP G Q + + +
Sbjct: 149 PCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFVPKGRQAKYFSGENAI 208
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P + DIL+AK+RPG EID+TM K +G DHAKFSPVATA YRL+P IT+ + I G A
Sbjct: 209 RPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMPTITILEPILGRDA 268
Query: 129 QRLQTMFSPGVISIEK 144
++ Q F GVI +EK
Sbjct: 269 EKFQKCFPEGVIGLEK 284
>gi|85119573|ref|XP_965664.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
gi|28927476|gb|EAA36428.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
Length = 378
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
PC+ +T++ +LK+KC + S + S ++Y V+ KDI++VP G Q + + +
Sbjct: 149 PCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFVPKGRQAKYFSGENAI 208
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P + DIL+AK+RPG EID+TM K +G DHAKFSPVATA YRL+P IT+ + I G A
Sbjct: 209 RPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMPTITILEPILGRDA 268
Query: 129 QRLQTMFSPGVISIEK 144
++ Q F GVI +EK
Sbjct: 269 EKFQKCFPEGVIGLEK 284
>gi|167535426|ref|XP_001749387.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772253|gb|EDQ85908.1| predicted protein [Monosiga brevicollis MX1]
Length = 363
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
+P + +T+ F LK CTK + + +++ +D+YE ++++D++W P G Q ++ +
Sbjct: 131 QPTDANTIVFNLKRVCTKKPNAPADATNPEDLYENAVIYSRDLEWAPQGQQEQVFGKNGF 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
++DDI+I K+RPG E+++ +F K +G+ HAK+SPVATA YRL+P+I L + I G +A
Sbjct: 191 SVVYDDIVIMKMRPGQEVNMQLFCEKGVGKTHAKWSPVATASYRLMPEIILKEPIVGPLA 250
Query: 129 QRLQTMFSPGVISIEKK 145
+LQ FSPGV I K
Sbjct: 251 HKLQKCFSPGVCDIVKN 267
>gi|336263008|ref|XP_003346286.1| hypothetical protein SMAC_05823 [Sordaria macrospora k-hell]
gi|380093615|emb|CCC08579.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 378
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV- 68
PC+ +T++ +LK+KC + + + S ++Y V+ KDI++VP G Q + +V
Sbjct: 149 PCDYNTVELELKVKCENNQNAPTDSKDPKELYHNAHVYAKDIKFVPKGRQAKYFSGENVI 208
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P + DIL+AK+RPG EID+TM K +G DHAKFSPVATA YRL+P IT+ + I G A
Sbjct: 209 RPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMPTITILEPILGRDA 268
Query: 129 QRLQTMFSPGVISIEK 144
++ Q F GVI +EK
Sbjct: 269 EKFQKCFPKGVIGLEK 284
>gi|336464897|gb|EGO53137.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2508]
Length = 378
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
PC+ +T++ +LK+KC + + + S ++Y V+ KDI++VP G Q + + +
Sbjct: 149 PCDYNTVELELKVKCENNENAPADSKDPKELYHNAHVYAKDIKFVPKGRQAKYFSGENAI 208
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P + DIL+AK+RPG EID+TM K +G DHAKFSPVATA YRL+P IT+ + I G A
Sbjct: 209 RPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMPTITILEPILGRDA 268
Query: 129 QRLQTMFSPGVISIEK 144
++ Q F GVI +EK
Sbjct: 269 EKFQKCFPEGVIGLEK 284
>gi|405120194|gb|AFR94965.1| rpa42 [Cryptococcus neoformans var. grubii H99]
Length = 350
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
+P E DT+ F L+++C + + S + MY V++ ++WVP G Q +K
Sbjct: 129 QPHEHDTVVFDLRVRCDRRPNVDRSETDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAP 188
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++DDIL+ KLRPG ++D+ FA K +G DHAKFSPVATA YRLLP I L I E
Sbjct: 189 RPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQ 248
Query: 129 QRLQTMFSPGVISIEK 144
Q+ + F PGVI IEK
Sbjct: 249 QKFKGCFPPGVIEIEK 264
>gi|430813139|emb|CCJ29483.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 578
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P + DT+ LK+ CTK+ S + + +Y V++ DIQW P G Q +++K +
Sbjct: 90 PTDYDTVVLSLKVACTKNPKASENERDPEKLYINSNVYSGDIQWQPAGRQIELFKDDPIK 149
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
+HD ILIAKLRPG EIDVTM + IG+DHAKFSPV+T+ YRLLP I + + I + A+
Sbjct: 150 AVHDKILIAKLRPGQEIDVTMHCILGIGQDHAKFSPVSTSSYRLLPTIHILEPIYDDDAE 209
Query: 130 RLQTMFSPGVISI 142
+ FS GVI I
Sbjct: 210 KFALCFSKGVIDI 222
>gi|388858416|emb|CCF48010.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Ustilago hordei]
Length = 401
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ F LK KC ++ + + S D +Y H V+++ + W P G Q + + + P+
Sbjct: 180 DSNTVVFSLKAKCERNPNAARGESDPDKLYIGHNVYSEQLVWDPKGDQDEDFADAPPKPV 239
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H ILIAKLRPG E+D+ + K IGRDHAKFSPVATA YRLLP I L + +EGE +L
Sbjct: 240 HAKILIAKLRPGQELDLELHCEKGIGRDHAKFSPVATATYRLLPHIQLLKPVEGEQVDKL 299
Query: 132 QTMFSPGVISIE 143
F PGVI E
Sbjct: 300 LKCFPPGVIGAE 311
>gi|354546273|emb|CCE43003.1| hypothetical protein CPAR2_206460 [Candida parapsilosis]
Length = 336
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+DK++ E +T+ L + CTK+ + +S++ +++Y V+ KD+++ P GSQ
Sbjct: 118 VDKSVDENDRYTEDNTIVLSLDVTCTKNPHAPKNSTNPNELYRNSNVYAKDLKFEPQGSQ 177
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ YK + V P +IL+AKLRPG EI + + +G DHAKFSPVATA YRLLP I +
Sbjct: 178 LEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGVGADHAKFSPVATASYRLLPVIDI 237
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I GE+A++ Q F PGVI I+ K A V
Sbjct: 238 KEPITGELAKKFQKCFPPGVIEIDSKGEAYV 268
>gi|440800830|gb|ELR21864.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 350
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E ++ TL F+LK++CT+S + ++ + ++ Y KV+++D+ W P+G Q +++
Sbjct: 140 EETDETTLVFKLKVRCTRSNN-TNPQNPEEAYVNSKVYSRDLIWEPVGGQAELFADDPPR 198
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P+HDDILIAKLRPG EI+V K G++HAK+SPV+TA+YRLLP I ++ +G+ A+
Sbjct: 199 PVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAYYRLLPDIKFVKDFKGQEAK 258
Query: 130 RLQTMFSPGVISIEKKPNAGV 150
+L V IE A V
Sbjct: 259 KLVAKCPMNVFDIEDSGKAYV 279
>gi|388582543|gb|EIM22847.1| RNA polymeras-like protein I subunit hRPA39, partial [Wallemia sebi
CBS 633.66]
Length = 362
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P +Q+T+ F L++ CT+ A + + D +YE HKV++KD +WVP G Q +D
Sbjct: 127 PNDQNTIVFTLQVACTRKAKVAAGETDPDKIYENHKVYSKDFKWVPQGGQASDPLFTDNP 186
Query: 70 P--IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
P + +ILI KLRPG ID+ + VK +G+DHAKFSP ATA YRLLP + L Q I+ E
Sbjct: 187 PRVAYPEILITKLRPGQSIDLELHCVKGLGQDHAKFSPAATASYRLLPTVKLHQPIKSEH 246
Query: 128 AQRLQTMFSPGVISIEKK 145
A+ + FS GV+ + +
Sbjct: 247 AELFASCFSEGVVEVREN 264
>gi|156061627|ref|XP_001596736.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980]
gi|154700360|gb|EDO00099.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VG 69
+ +T+Q LKI+CT++ + AD +Y V+ KDI++ P G Q + + + +
Sbjct: 160 DHNTIQLSLKIECTRNKE-AAPGEADPRKIYHNAHVYAKDIEFKPFGRQLEYFSGENAIR 218
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
+ DILIAK+RPG ID+ M A+K IGRDHAKFSPVATA YRLLP I +TQ I G+ A+
Sbjct: 219 SPNPDILIAKMRPGQVIDIDMHAIKGIGRDHAKFSPVATASYRLLPVINITQPILGKDAE 278
Query: 130 RLQTMFSPGVISIEK 144
+ + F PGVI IEK
Sbjct: 279 KFKKCFPPGVIGIEK 293
>gi|321257697|ref|XP_003193678.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
gi|317460148|gb|ADV21891.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
Length = 350
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
+P E DT+ F L+++C + + S MY V++ ++WVP G Q +K
Sbjct: 129 QPHEHDTVVFDLRVRCDRRPNVDRSEKDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAP 188
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++DDIL+ KLRPG ++D+ FA K +G DHAKFSPVATA YRLLP I L I E
Sbjct: 189 KPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQ 248
Query: 129 QRLQTMFSPGVISIEK 144
Q+ + F PGVI IEK
Sbjct: 249 QKFKGCFPPGVIEIEK 264
>gi|403361811|gb|EJY80614.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Oxytricha
trifallax]
Length = 405
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 5/136 (3%)
Query: 13 EQDTLQFQLKIKCTKS-----ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
E D+L+F+L ++CTK +++ + +Y V + ++W+P+G+Q +
Sbjct: 175 EDDSLRFKLHVRCTKKDPRAPVIINNTVDEEKLYNNANVLSGQLKWIPVGNQAQKFGVDG 234
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P+ DDILIAKLRPG EI++ + K IG+ HAK+SPV+TAFYRL+P I +TQ+I E
Sbjct: 235 IKPLFDDILIAKLRPGQEIEMELICEKGIGKTHAKWSPVSTAFYRLVPDIKITQDIMNEE 294
Query: 128 AQRLQTMFSPGVISIE 143
A L+ + GV IE
Sbjct: 295 AVELKNLCPTGVYDIE 310
>gi|296422447|ref|XP_002840772.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636995|emb|CAZ84963.1| unnamed protein product [Tuber melanosporum]
Length = 377
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
EP ++DT+ LK C ++ + + D +Y H V+ DI + P G Q + V
Sbjct: 135 EPTDEDTVVLYLKKACERNPDAKKTDTDPDKLYINHNVYASDILFEPAGRQIKSFAHDPV 194
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
+ DILIAKLRPG EID+TM +K IG+DHAKFSPVATA YRLLP I + + I G+ A
Sbjct: 195 RAANPDILIAKLRPGQEIDLTMHCIKGIGQDHAKFSPVATASYRLLPDIKIKKPIRGKAA 254
Query: 129 QRLQTMFSPGVISIEKK 145
+R F GVI+I ++
Sbjct: 255 ERFAACFPKGVIAIRER 271
>gi|401884851|gb|EJT48989.1| hypothetical protein A1Q1_01900 [Trichosporon asahii var. asahii
CBS 2479]
Length = 356
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 11 PCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P E DT F L++KC + + + +Y V+T ++WVP G Q YK +
Sbjct: 139 PMENDTHVFDLRVKCDRRRDAAPGETDPKKLYYDSNVYTGMMKWVPSGQQKSKYKGKEPR 198
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P+ DDIL+ KLRPG +D+ FA K +G DHAK+SPVATA YRLLP I L + I E +
Sbjct: 199 PVLDDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHIILREPIPLEDQE 258
Query: 130 RLQTMFSPGVISIEK 144
+ ++ F+PGVI +EK
Sbjct: 259 KFKSCFAPGVIELEK 273
>gi|443897408|dbj|GAC74749.1| RNA polymerase I and III, subunit RPA40/RPC40 [Pseudozyma
antarctica T-34]
Length = 404
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ F LK KC ++ + + + D +Y H V++ ++W P G Q D + + P+
Sbjct: 183 DSNTVVFHLKAKCERNRNAARGETDPDKLYIGHNVYSGALEWDPKGGQEDDFADAPPRPV 242
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HD ILIAKLRPG E+D+ + K IG+DHAKFSPVATA YRLLP I L Q + + +
Sbjct: 243 HDRILIAKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQLLQPVPAALVDKF 302
Query: 132 QTMFSPGVISI 142
F PGVI +
Sbjct: 303 VACFPPGVIGV 313
>gi|343427703|emb|CBQ71230.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Sporisorium reilianum SRZ2]
Length = 402
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ F LK KC ++ S + + D +Y H V+++ +QW G Q + + + P+
Sbjct: 182 DSNTVVFHLKAKCERNRSAARGETDPDKLYIGHNVYSEQLQWDAKGGQDEDFADAPPRPV 241
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HD ILIAKLRPG E+D+ + K IG+DHAKFSPVATA YRLLP I L Q I E
Sbjct: 242 HDKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQLLQPIPAEHIDSF 301
Query: 132 QTMFSPGVISIE 143
F PGVI +E
Sbjct: 302 VKCFPPGVIGVE 313
>gi|448510710|ref|XP_003866410.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380350748|emb|CCG20970.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
Length = 336
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+DK + E +T+ L + CTK+ + +S++ ++Y V+ KD+++ P GSQ
Sbjct: 118 VDKTVDENDRYTEDNTIVLSLDVTCTKNPHAPKNSTNPSELYRNSNVYAKDLKFEPQGSQ 177
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ YK + V P +IL+AKLRPG EI + + IG DHAKFSPVATA YRLLP I +
Sbjct: 178 LEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGIGADHAKFSPVATASYRLLPVIDI 237
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I GE+A++ Q F GVI I+ K A V
Sbjct: 238 KEPITGELAKKFQKCFPSGVIEIDPKGEAYV 268
>gi|336372326|gb|EGO00665.1| hypothetical protein SERLA73DRAFT_178536 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385070|gb|EGO26217.1| hypothetical protein SERLADRAFT_447454 [Serpula lacrymans var.
lacrymans S7.9]
Length = 363
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
MD + +++TL F+LK+ C ++ + S+ +MY V + ++W P G Q
Sbjct: 125 MDTKETTNDQATDRNTLVFRLKVACERNKNAPKGSTDPREMYINSDVLSSHLEWEPQGEQ 184
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
++ SS P + +I++ KLRPG EID+ M AVK +G+DHAKF PVATA YRLLP + L
Sbjct: 185 ATVFASSPPAPTNPNIVLGKLRPGQEIDIEMHAVKGVGKDHAKFCPVATASYRLLPLVIL 244
Query: 120 TQE--IEGEMAQRLQTMFSPGVISIEKKPNA 148
E + +A++ Q FSPGVI ++ + A
Sbjct: 245 NPEKPVPPHLAEKFQKCFSPGVIRVDPQTKA 275
>gi|149247366|ref|XP_001528095.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146448049|gb|EDK42437.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 336
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+DK L E +T+ L + C+K+ + +S+ +MY+ V+ +D+++ P GSQ
Sbjct: 118 VDKKLDESERYTEDNTIVLTLDVACSKNLQAPKNSTDPKEMYKNSHVYARDLKFEPQGSQ 177
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ YK S V P DIL+AKLRPG EI + + + +G DHAKFSPVATA YRLLP I +
Sbjct: 178 LEKYKDSPVVPCDPDILLAKLRPGQEISMRVHCILGLGCDHAKFSPVATASYRLLPVIDI 237
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I G++A++ Q F PGVI I+ A V
Sbjct: 238 KEPITGDLARKFQKCFPPGVIGIKDDGEAYV 268
>gi|378727237|gb|EHY53696.1| DNA-directed RNA Polymerase III subunit C5 [Exophiala dermatitidis
NIH/UT8656]
Length = 373
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 4/148 (2%)
Query: 1 MDKNLRLKYEP---CEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPI 56
+D N +E + +T+ L ++C ++ + +++ ++ Y V+++ IQW P
Sbjct: 132 IDSNPEFGFEGTGRADYNTVVLHLHVRCERNPHADKNATEPEEKYINSTVYSRHIQWEPQ 191
Query: 57 GSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPK 116
G Q + +K + P+ DILIAKLRPG EID+ + A IG DHAKFSPVATA YRL+P
Sbjct: 192 GQQQERFKDGPIEPVSPDILIAKLRPGQEIDMVLHAHLGIGADHAKFSPVATATYRLMPT 251
Query: 117 ITLTQEIEGEMAQRLQTMFSPGVISIEK 144
IT+T+ I G A++ Q F PGVI +++
Sbjct: 252 ITITKPILGADARKFQKCFPPGVIDLDR 279
>gi|324508945|gb|ADY43772.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Ascaris suum]
Length = 343
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 6/131 (4%)
Query: 16 TLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP--IH 72
L F+LK+ C + + S + ++++ V++K +W+PIG Q S P +H
Sbjct: 135 NLIFELKVSCKRKPNAPKSATDPQEIFDNAVVYSKSFEWIPIGDQA---TSLPYPPNMVH 191
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDIL+AKLRPG EI+ VK IGRDHAKFSPVATA YRLLP I + ++ GE A+R++
Sbjct: 192 DDILVAKLRPGQEIEARCHCVKGIGRDHAKFSPVATASYRLLPDIVIKEKFSGEDAERIK 251
Query: 133 TMFSPGVISIE 143
FS GVI I+
Sbjct: 252 NSFSDGVIGID 262
>gi|146412650|ref|XP_001482296.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L I CTK+ + S+ D+Y V+ +D+++ P G Q D++K++ V P
Sbjct: 128 DENTIVLSLDIACTKNPHPPAGSTDPKDLYRNAHVYARDLKFEPQGRQVDLFKNNPVVPT 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DILIAKLRPG EI + + IG DHAKFSPV+TA YRL+ I +T+ I GE+A+R
Sbjct: 188 DPDILIAKLRPGQEISLRAHCILGIGSDHAKFSPVSTASYRLMSDIKITEPITGELAKRF 247
Query: 132 QTMFSPGVISIEK 144
Q F GVI IE
Sbjct: 248 QKCFPSGVIGIEN 260
>gi|241951478|ref|XP_002418461.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
gi|223641800|emb|CAX43762.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
Length = 336
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D+ + + E +T+ L + C+K+ + +S+ ++Y+ V+ KD ++ P G+Q
Sbjct: 118 VDETVDINDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYKNSHVYAKDFKFEPHGNQ 177
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ +K + V P DIL+AKLRPG EI + V IG DHAKFSPVATA YRLLP I +
Sbjct: 178 EEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDI 237
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
Q I GE+A++ Q F PGVI I+ A V
Sbjct: 238 KQPITGELAKKFQKCFPPGVIGIDTNGKAYV 268
>gi|255724476|ref|XP_002547167.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135058|gb|EER34612.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 337
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D+++ + E +T+ L + CTK+ + ++ + +Y+ V+ KD+++ P G+Q
Sbjct: 118 VDESVDVNDRFTEDNTIVLSLDVTCTKNPNAPKDATDPNVLYKNSNVYAKDLKFEPHGTQ 177
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ ++ + V P +ILIAKLRPG EI + + IG DHAKFSPVATA YRLLP I +
Sbjct: 178 AEKFRDTPVVPCDPNILIAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPVIDI 237
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVVA 152
+ I G++A++ Q F PGVI I+ K VA
Sbjct: 238 KEPITGKLAEKFQKCFPPGVIGIDSKTGEAYVA 270
>gi|323350237|gb|EGA84384.1| Rpc40p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 46 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 105
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 106 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 165
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEK 144
Q I+GE A+R Q F PGVI I++
Sbjct: 166 LQPIKGESARRFQKCFPPGVIGIDE 190
>gi|393909614|gb|EFO27840.2| hypothetical protein LOAG_00653 [Loa loa]
Length = 684
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 88/134 (65%), Gaps = 8/134 (5%)
Query: 14 QDTLQFQLKIKCTK-SASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP-- 70
+ L F++K+ C++ S + +++ ++YE V++ +W+PIG Q SS P
Sbjct: 475 ERNLIFEIKVTCSRNSNALKTATNPKEIYENAFVYSNAFKWIPIGDQS----SSLPYPPA 530
Query: 71 -IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
+HDDIL+A+LRPG EI+ +K +GRDHAKFSPVATA YRLLP+I L ++ G AQ
Sbjct: 531 MVHDDILVAQLRPGQEIEARCHCLKGLGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQ 590
Query: 130 RLQTMFSPGVISIE 143
R+++ FS GVI I+
Sbjct: 591 RIKSSFSEGVIEID 604
>gi|365762578|gb|EHN04112.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 323
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
Q I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267
>gi|190408037|gb|EDV11302.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|207340297|gb|EDZ68691.1| YPR110Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150260|emb|CAY87063.1| Rpc40p [Saccharomyces cerevisiae EC1118]
gi|323331346|gb|EGA72764.1| Rpc40p [Saccharomyces cerevisiae AWRI796]
Length = 335
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
Q I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267
>gi|6325367|ref|NP_015435.1| Rpc40p [Saccharomyces cerevisiae S288c]
gi|133369|sp|P07703.1|RPAC1_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=C37; AltName: Full=DNA-directed RNA polymerases I
and III 40 kDa polypeptide; Short=AC40; Short=C40
gi|172474|gb|AAA34999.1| RNA polymerase C-40 [Saccharomyces cerevisiae]
gi|914981|gb|AAB68080.1| Rpc40p: RNA Polymerases I and III 40 kD subunit (Swiss Prot.
accession number P07703) [Saccharomyces cerevisiae]
gi|151942887|gb|EDN61233.1| AC40 [Saccharomyces cerevisiae YJM789]
gi|256269060|gb|EEU04397.1| Rpc40p [Saccharomyces cerevisiae JAY291]
gi|285815633|tpg|DAA11525.1| TPA: Rpc40p [Saccharomyces cerevisiae S288c]
gi|323306842|gb|EGA60127.1| Rpc40p [Saccharomyces cerevisiae FostersO]
gi|349581913|dbj|GAA27070.1| K7_Rpc40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296113|gb|EIW07216.1| Rpc40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 335
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
Q I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267
>gi|323335178|gb|EGA76468.1| Rpc40p [Saccharomyces cerevisiae Vin13]
gi|323346326|gb|EGA80616.1| Rpc40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 335
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
Q I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267
>gi|323302589|gb|EGA56396.1| Rpc40p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
Q I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267
>gi|380478357|emb|CCF43643.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 372
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+Q +L+I+CT+++ + + D + V+ KDI++VP G Q + + D + P++
Sbjct: 147 NTVQLRLRIECTRNSDAAPGETDPDKAFHNASVYAKDIEFVPTGRQLEFFSGEDAIRPVN 206
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DIL+AKLRPG I++ M K IG DHAKFSPVATA YRL+P IT+T+ I G+ A++
Sbjct: 207 PDILVAKLRPGQCIELDMHMHKGIGADHAKFSPVATASYRLMPTITITRPILGQDAEKFA 266
Query: 133 TMFSPGVISIEK 144
F GVI IEK
Sbjct: 267 KCFPQGVIGIEK 278
>gi|392573616|gb|EIW66755.1| hypothetical protein TREMEDRAFT_34640 [Tremella mesenterica DSM
1558]
Length = 347
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 76/132 (57%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
+ DT+ FQL++KC + + Y V+T ++W P G+Q +K + P+
Sbjct: 133 DTDTVVFQLRVKCDRQPGTQGETDPKRKYWDSDVYTGMLEWEPAGAQKTKWKRKEPKPVD 192
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DIL+ KLRPG ID+T FA K G DHAKFSPVATA YRLLP I + I E Q+
Sbjct: 193 PDILLCKLRPGQLIDLTCFARKGTGADHAKFSPVATASYRLLPHIIIRSPIPVEHQQKFV 252
Query: 133 TMFSPGVISIEK 144
F PGVI IEK
Sbjct: 253 QSFPPGVIGIEK 264
>gi|402582559|gb|EJW76504.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 299
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 16 TLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD 74
L F++K+ C+++ + +++ ++YE V++ +W+PIG Q +HDD
Sbjct: 92 NLIFEIKVTCSRNPNALKTATNPKEIYENAFVYSNSFKWIPIGDQSTSLPYPP-AMVHDD 150
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTM 134
IL+A+LRPG EI+ +K +GRDHAKFSPVATA YRLLP+I L ++ G AQR+++
Sbjct: 151 ILVAQLRPGQEIEARCHCLKGLGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQRIKSS 210
Query: 135 FSPGVISIE 143
FS GVI I+
Sbjct: 211 FSEGVIEID 219
>gi|171696332|ref|XP_001913090.1| hypothetical protein [Podospora anserina S mat+]
gi|170948408|emb|CAP60572.1| unnamed protein product [Podospora anserina S mat+]
Length = 372
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 14/138 (10%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHAD-------DMYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
+T+ +L +KC H+ +AD +Y V+ KDI + PIG Q D + D
Sbjct: 147 NTVALELNVKC------EHNENADPNETDPTKLYHHAHVYAKDIVFKPIGRQVDYFSGED 200
Query: 68 V-GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG EI+V M K +G DHAKFSPVATA YR++P IT+TQ I G
Sbjct: 201 IIRPVNPDILIAKLRPGQEINVQMHMHKGVGSDHAKFSPVATASYRIMPTITITQPILGR 260
Query: 127 MAQRLQTMFSPGVISIEK 144
A++ Q F GVI +EK
Sbjct: 261 DAEKFQRCFPKGVIGLEK 278
>gi|312382270|gb|EFR27786.1| hypothetical protein AND_05113 [Anopheles darlingi]
Length = 259
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 27/141 (19%)
Query: 11 PCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P QD+L+F+LK+KCT K+ + ++ D+MY H +++ I
Sbjct: 124 PTAQDSLEFELKVKCTRKNKDSTEVTNNDNMYRNHSIYSGQIN----------------- 166
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
K+RPGHE D+ +FAVK IG+DHAKFSPVAT YR+LP I LTQ + G A+
Sbjct: 167 ---------KMRPGHEFDIKLFAVKGIGKDHAKFSPVATVSYRMLPDIQLTQPVIGNDAR 217
Query: 130 RLQTMFSPGVISIEKKPNAGV 150
LQ FSPGVI I+K A V
Sbjct: 218 LLQKCFSPGVIEIDKSDQAYV 238
>gi|365757905|gb|EHM99776.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 224
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ + + ++Y V+ +D+++ P G Q + + V P
Sbjct: 17 DENTIVLSLNVKCTRNPDAPKDCTDPKELYNNAHVYARDLKFEPQGRQSTTFAACSVVPA 76
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I + Q I+GE A+R
Sbjct: 77 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQSIKGESAKRF 136
Query: 132 QTMFSPGVISIEK 144
Q F PGVI I++
Sbjct: 137 QKCFPPGVIGIDE 149
>gi|349592821|gb|AEP96149.1| RNA polymerase I polypeptide C, partial [Euplectes orix]
Length = 165
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 63/84 (75%)
Query: 61 DMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
D++ +D P+HDDILIA LRPG EIDV M VK IG+DHAKFSPVATA YRLLP ITL
Sbjct: 2 DLFPDADFRPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLL 61
Query: 121 QEIEGEMAQRLQTMFSPGVISIEK 144
Q IE E A+ LQ FSPGVI I+
Sbjct: 62 QPIEDEAAETLQKCFSPGVIEIQN 85
>gi|429853404|gb|ELA28479.1| DNA-directed RNA polymerases i and iii 40 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 371
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKH-KVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+Q +L+I+CT++ S + ++ H V+ KDI++VP G Q + + D + P++
Sbjct: 146 NTVQLRLRIECTRNPDASPNEKDTNVAFNHASVYAKDIEFVPSGRQVEFFSGEDAIRPVN 205
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG I++ M K IG DHAKFSPVATA YRL+P IT+T+ I G+ A++
Sbjct: 206 PDILIAKLRPGQCIELDMHMHKGIGADHAKFSPVATASYRLMPTITITRPILGQDAEKFA 265
Query: 133 TMFSPGVISIEK 144
F GVI IEK
Sbjct: 266 KCFPKGVIGIEK 277
>gi|238882305|gb|EEQ45943.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
albicans WO-1]
Length = 336
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D+ + + E +T+ L + C+K+ + +S+ ++Y+ V+ KD ++ P G+Q
Sbjct: 118 VDETVDINDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYKNSHVYAKDFKFEPHGNQ 177
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ +K + V P DIL+AKLRPG EI + V IG DHAKFSPVATA YRLLP I +
Sbjct: 178 EEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDI 237
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I GE+A++ Q F PGVI I+ A V
Sbjct: 238 KEPITGELAKKFQKCFPPGVIGIDANGKAYV 268
>gi|190348712|gb|EDK41218.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L I CTK+ + S+ D+Y V+ +D+++ P G Q D++K++ V P
Sbjct: 128 DENTIVLSLDIACTKNPHPPAGSTDPKDLYRNAHVYARDLKFEPQGRQVDLFKNNPVVPT 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DILIAKLRPG EI + + IG DHAKFSPV+TA YRL+ I +T+ I GE A+R
Sbjct: 188 DPDILIAKLRPGQEISLRAHCILGIGSDHAKFSPVSTASYRLMSDIKITEPITGESAKRF 247
Query: 132 QTMFSPGVISIEK 144
Q F GVI IE
Sbjct: 248 QKCFPSGVIGIEN 260
>gi|260803742|ref|XP_002596748.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
gi|229282008|gb|EEN52760.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
Length = 290
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 72/101 (71%), Gaps = 3/101 (2%)
Query: 45 KVFTKDIQWVPIGSQGDMY---KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHA 101
+V + +PI + ++ + D+ P+HDDILIAKLRPG E+D+ + VK IGRDHA
Sbjct: 102 EVLAHRLGLIPIHADPRLFEYRQEGDIKPVHDDILIAKLRPGQEMDLKLHCVKGIGRDHA 161
Query: 102 KFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISI 142
KFSPVATA YRLLP+I LT+E++GE A RL FSPGV+ +
Sbjct: 162 KFSPVATASYRLLPEIVLTEEVKGERADRLVRCFSPGVMEV 202
>gi|68482204|ref|XP_714986.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
gi|68482331|ref|XP_714923.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436587|gb|EAK95947.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
Length = 369
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D+ + + E +T+ L + C+K+ + +S+ ++Y+ V+ KD ++ P G+Q
Sbjct: 151 VDETVDINDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYKNSHVYAKDFKFEPHGNQ 210
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ +K + V P DIL+AKLRPG EI + V IG DHAKFSPVATA YRLLP I +
Sbjct: 211 EEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDI 270
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I GE+A++ Q F PGVI I+ A V
Sbjct: 271 KEPITGELAKKFQKCFPPGVIGIDANGKAYV 301
>gi|401840259|gb|EJT43153.1| RPC40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 326
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ + ++Y V+ +D+++ P G Q + + V P
Sbjct: 128 DENTIVLSLNVKCTRNPDAPKDCTDPKELYNNAHVYARDLKFEPQGRQSTTFAACSVVPA 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I + Q I+GE A+R
Sbjct: 188 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQSIKGESAKRF 247
Query: 132 QTMFSPGVISIE 143
Q F PGVI I+
Sbjct: 248 QKCFPPGVIGID 259
>gi|409077914|gb|EKM78278.1| hypothetical protein AGABI1DRAFT_121405 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 357
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-G 69
+ +T+ F+L I CT++ +S + D++Y H+V + ++W P G Q +++ G
Sbjct: 129 TDHNTIVFELDITCTRNPGAPKASENPDELYINHEVLSGHLRWKPAGDQLTVFEGLPAPG 188
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P + +I++AKLRPG + + + A+K +G+DHAKFSPVATA YRLLP I + + I +++
Sbjct: 189 PTNPNIVLAKLRPGQSVRMELHAIKGVGKDHAKFSPVATASYRLLPHIKIKKSIPPSLSE 248
Query: 130 RLQTMFSPGVISIEKKPNAGVV 151
+ Q FSPGV+ I+ + + V
Sbjct: 249 KFQKCFSPGVVKIDSRTGSASV 270
>gi|401623159|gb|EJS41266.1| rpc40p [Saccharomyces arboricola H-6]
Length = 335
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTVVLSLNVKCTRNPDAPKGSTDPRELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ + V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFANCPVVPADPDILLAKLRPGQEILLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
+ I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LKPIKGEAAKRFQKCFPPGVIGIDENSDEAYV 267
>gi|154319504|ref|XP_001559069.1| hypothetical protein BC1G_02233 [Botryotinia fuckeliana B05.10]
gi|347842400|emb|CCD56972.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Botryotinia fuckeliana]
Length = 389
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGP 70
+ +T+Q LKI+CT++ + + +Y V+ KDI++ P G Q + + + +
Sbjct: 162 DHNTIQLTLKIECTRNKEAAPGETDPRKVYHNAHVYAKDIEFKPFGRQLEYFSGENTIKS 221
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
+ DILIAK+RPG ID+ M A+K IGRDHAKFSPVATA YRLLP I +TQ I G+ A++
Sbjct: 222 PNPDILIAKMRPGQVIDIDMHAIKGIGRDHAKFSPVATASYRLLPVIDITQPILGKDAKK 281
Query: 131 LQTMFSPGVISIEK 144
+ F GVI IEK
Sbjct: 282 FKRCFPDGVIGIEK 295
>gi|426193914|gb|EKV43846.1| hypothetical protein AGABI2DRAFT_209410 [Agaricus bisporus var.
bisporus H97]
Length = 357
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
Query: 12 CEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-G 69
+ +T+ F+L I CT++ S + D++Y H+V + ++W P G Q +++ G
Sbjct: 129 TDHNTIVFELDITCTRNPGAPKVSENPDELYINHEVLSGHLRWKPAGDQLTVFEGLPAPG 188
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P++ +I++AKLRPG + + + A+K +G+DHAKFSPVATA YRLLP I + + I +++
Sbjct: 189 PMNPNIVLAKLRPGQSVRMELHAIKGVGKDHAKFSPVATASYRLLPHIKIKKPIPPSLSE 248
Query: 130 RLQTMFSPGVISIEKKPNAGVV 151
+ Q FSPGV+ I+ + + V
Sbjct: 249 KFQKCFSPGVVKIDSRTGSASV 270
>gi|328766566|gb|EGF76620.1| hypothetical protein BATDEDRAFT_21078 [Batrachochytrium
dendrobatidis JAM81]
Length = 342
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P + +TL F+L IKCT++ S S + + Y V +K + W P G Q + +K S +
Sbjct: 123 PTDLNTLVFRLNIKCTRNPHASASEINPSNKYIDSDVLSKHLIWEPQGDQVEKFKDSPIR 182
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P +DDILI KLRPG EI+ + K IG++HAK+SPVATA YRLLP I + + I G+ A+
Sbjct: 183 PYYDDILITKLRPGQEIEAELHCQKGIGKEHAKWSPVATASYRLLPDIQILKPITGKDAE 242
Query: 130 RLQTMFSPGVISIEKKPNAG 149
+ + F G + I +K G
Sbjct: 243 KFKNCFPEGTVKIVQKNGVG 262
>gi|169774489|ref|XP_001821712.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
oryzae RIB40]
gi|238496959|ref|XP_002379715.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
gi|83769575|dbj|BAE59710.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694595|gb|EED50939.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
Length = 373
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 86/136 (63%), Gaps = 2/136 (1%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD- 67
+P + +T+ +L I+CTK+ + + + +Y+ V+ +DI + P+G Q + D
Sbjct: 143 DPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDITFHPVGRQEQFFTGEDA 202
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P++ DILIAKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I GE
Sbjct: 203 IQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPDIQILRPILGED 262
Query: 128 AQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 263 AKKFAKCFPKGVIGLE 278
>gi|71013592|ref|XP_758635.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
gi|46098293|gb|EAK83526.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
Length = 320
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSHS-SHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ F LK KC ++ S + + D +Y H V+++ ++W G Q + S P+
Sbjct: 177 DSNTVVFHLKAKCERNRSAARGETDPDKLYIGHNVYSEQLRWDAKGGQEKDFADSPPRPV 236
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
D ILIAKLRPG E+D+ + K IG+DHAKFSPVATA YRLLP I L Q I E +
Sbjct: 237 QDKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQLLQPIPDESIDKF 296
Query: 132 QTMFSPGVISIE 143
+ F PGVI ++
Sbjct: 297 VSCFPPGVIGVQ 308
>gi|391867820|gb|EIT77060.1| RNA polymerase I and III, subunit RPA40/RPC40 [Aspergillus oryzae
3.042]
Length = 290
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 86/136 (63%), Gaps = 2/136 (1%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD- 67
+P + +T+ +L I+CTK+ + + + +Y+ V+ +DI + P+G Q + D
Sbjct: 60 DPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDITFHPVGRQEQFFTGEDA 119
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P++ DILIAKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I GE
Sbjct: 120 IQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPDIQILRPILGED 179
Query: 128 AQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 180 AKKFAKCFPKGVIGLE 195
>gi|344232398|gb|EGV64277.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
gi|344232399|gb|EGV64278.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
Length = 336
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L + CT + + S++ ++Y V+ KD+++ P G Q +++K + V
Sbjct: 130 DENTIVLTLDVTCTHNPNAPKGSTNPKELYRNSHVYAKDLKFEPQGKQVELFKGNPVTAA 189
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ILIAKLRPG EI + + +G DHAKFSPVATA YRL+P I + Q I GE A+R
Sbjct: 190 DPNILIAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLMPVIDIKQPISGEQAKRF 249
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F PGV+ I+ K A V
Sbjct: 250 QRCFPPGVVDIDSKGEAYV 268
>gi|156839627|ref|XP_001643502.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114116|gb|EDO15644.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 320
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ + +Y ++ +D+++ P G Q + + S V
Sbjct: 114 DENTIVLSLNVKCTRNLDAPKDCTDPSILYHNAHIYARDLKFEPQGKQEETFADSPVVSA 173
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DILIAKLRPG EI + + IG DHAKFSPV TA YRL+PKI +T++I+GE A+R
Sbjct: 174 DPDILIAKLRPGQEISLRAHCILGIGADHAKFSPVCTASYRLMPKIIITEKIKGESAKRF 233
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F PGVI I + A V
Sbjct: 234 QKCFPPGVIDINENDEAYV 252
>gi|367015666|ref|XP_003682332.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
gi|359749994|emb|CCE93121.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
Length = 335
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L + CT++ + +Y V+ D+++ P G Q +++ V P
Sbjct: 128 DENTIVLTLNVTCTRNPDAPKDCTDPKILYRNSSVYAHDLKFEPQGRQAELFAKCPVVPA 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + +G DHAKFSPVATA YRLLP I +T+ I GE A++
Sbjct: 188 DPDILLAKLRPGQEISLRAHCILGVGGDHAKFSPVATASYRLLPHINITKPITGESAKKF 247
Query: 132 QTMFSPGVISIEKKPNAGVV 151
Q FSPGVI I++ VV
Sbjct: 248 QKCFSPGVIDIDESTGEAVV 267
>gi|255716882|ref|XP_002554722.1| KLTH0F12056p [Lachancea thermotolerans]
gi|238936105|emb|CAR24285.1| KLTH0F12056p [Lachancea thermotolerans CBS 6340]
Length = 350
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L ++CT++ + +Y ++ +D+++ P G Q + + + V P
Sbjct: 144 DENTIVLTLNVRCTRNPDAPKDCTDPKILYRNAHIYARDLKFEPQGKQRETFAKNPVVPA 203
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + V IG DHAKFSPV+TA YRL+P I +TQ I GE AQR
Sbjct: 204 DPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVSTASYRLMPHINITQPITGESAQRF 263
Query: 132 QTMFSPGVISIEKKPNAGV 150
FSPGVI I A V
Sbjct: 264 AKCFSPGVIGINDNGEAFV 282
>gi|258576271|ref|XP_002542317.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
gi|237902583|gb|EEP76984.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
Length = 378
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSD--VG 69
+ +T+ +L +CTK+ + S +Y V+ +DI + P+G Q + D +
Sbjct: 143 DHNTIVLKLNAECTKNPNASPDEEDPTVLYNNAHVYARDIVFEPVGRQTTFFSGPDGEIQ 202
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P + DIL+AKLRPG +ID+ M +K IG+DHAKFSPVATA YRLLP I +T+ I G+ A
Sbjct: 203 PSNPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGDDAV 262
Query: 130 RLQTMFSPGVISIE 143
+ F PGVI IE
Sbjct: 263 KFANCFPPGVIGIE 276
>gi|367044228|ref|XP_003652494.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
gi|346999756|gb|AEO66158.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+ +L++KC A+ + +Y+ V+ +DI++ P+G Q + +D + P++
Sbjct: 149 NTVSLRLEVKCEYNEAAAPGETDPTKLYKHAHVYARDIEFCPVGRQEKYFSGADAIAPVN 208
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG EI ++M K +G DHAKFSPVATA YRLLP I + + I G A++
Sbjct: 209 PDILIAKLRPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPIIKIERPILGRDAEKFA 268
Query: 133 TMFSPGVISIEK 144
F PGVI +EK
Sbjct: 269 RCFPPGVIGLEK 280
>gi|254580391|ref|XP_002496181.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
gi|238939072|emb|CAR27248.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
Length = 335
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ + +Y ++ +D+++ P GSQ + + V P
Sbjct: 128 DENTIVMTLNVKCTRNPDAPKDCTDPKILYRNSHIYARDLKFEPQGSQVETFAKCPVIPT 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + +G DHAKFSPVATA YRLLP I + + I+GE+AQ+
Sbjct: 188 DPDILLAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLLPHIDIREPIKGELAQKF 247
Query: 132 QTMFSPGVISIEKKPNAGVV 151
Q F PGVI I + + V
Sbjct: 248 QKCFPPGVIGINESTDEAYV 267
>gi|344303022|gb|EGW33296.1| RNA polymerase III (C) subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 335
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E +T+ L + CTK+ + +S++A ++Y V+ D+++ P GSQ + +K++ V P
Sbjct: 129 EDNTIVLSLDVVCTKNPNAPKNSTNAKELYRNSHVYASDLKFEPHGSQLEKFKNNPVVPA 188
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+IL+AKLRPG EI + + IG DHAKFSPVATA YRL+P I + + I G +A
Sbjct: 189 DPNILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLMPVIDIREPITGALAVNF 248
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F PGVI I + A V
Sbjct: 249 QKCFPPGVIGINDQGEAYV 267
>gi|260950905|ref|XP_002619749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847321|gb|EEQ36785.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 333
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ L + CT++ + + ++ +Y V+ +D+++ P G Q +++K S V P
Sbjct: 127 DTNTIVMSLDVSCTRNPHAPAGTTDPKLLYRNSSVYARDLKFEPQGRQAELFKDSPVVPC 186
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + V +G DHAKFSPVATA YRL+P I + + I GE A R
Sbjct: 187 DPDILLAKLRPGQEISLRVHCVLGVGSDHAKFSPVATASYRLMPVIDILEPISGEQAVRF 246
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I++K A V
Sbjct: 247 QKCFPSGVIGIDEKGEAYV 265
>gi|393219179|gb|EJD04666.1| hypothetical protein FOMMEDRAFT_80006 [Fomitiporia mediterranea
MF3/22]
Length = 387
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
++ TL F+L+++C + A + S++ DD+YE H V ++W P G Q D+ + GP
Sbjct: 138 DRSTLVFKLEVECKRKAGAPAESANPDDLYENHLVTAGMLRWEPQGEQADVPQLKPPGPT 197
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ +I++AKLRPG ID+ A+K++G++HAK+SPVATA YR+ P IT+ ++ A++
Sbjct: 198 NPNIVLAKLRPGQVIDMECHAIKNVGKEHAKWSPVATASYRIHPHITILKQPPSGSARKF 257
Query: 132 QTMFSPGVISI 142
FSPGVI +
Sbjct: 258 ADCFSPGVIKV 268
>gi|196010261|ref|XP_002114995.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
gi|190582378|gb|EDV22451.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
Length = 349
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 85/139 (61%), Gaps = 6/139 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
P ++++ F L+IKC ++ S +HS D ++Y KV TKD++ Q + + D+
Sbjct: 129 PTNKNSITFTLQIKCIRNRS-AHSDATDPEELYINSKVTTKDLKLKYNEDQDNAIPNKDI 187
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYR---LLPKITLTQEIEG 125
P+H+DILIAKLRPG EID+ M VK G DHAKFSPV Y L+P+I L Q + G
Sbjct: 188 RPVHEDILIAKLRPGQEIDLEMICVKGTGADHAKFSPVGNNLYLLVWLMPEIILKQAVTG 247
Query: 126 EMAQRLQTMFSPGVISIEK 144
+ A+RL F GVI I++
Sbjct: 248 KRAKRLAKCFPEGVIGIKE 266
>gi|448091116|ref|XP_004197249.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|448095598|ref|XP_004198280.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359378671|emb|CCE84930.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359379702|emb|CCE83899.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L + C+K+ S+ ++Y V+ KD+++ P G Q +++K++ V P
Sbjct: 129 DENTIVLSLDVSCSKNPHAPQGSTDPKELYRNSHVYAKDLKFEPQGRQVEIFKNNPVVPT 188
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+IL+AKLRPG EI + + IG DHAKFSPVATA YRL+P I +T+ I+GE A++
Sbjct: 189 DPNILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATATYRLMPVIDITEPIKGEQAKKF 248
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I ++ A V
Sbjct: 249 QKCFPSGVIGINEEGEAFV 267
>gi|390597050|gb|EIN06450.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 379
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 16/152 (10%)
Query: 13 EQDTLQFQLKIKCTKSASFS------------HSSHADDMYEKHKVFTKDIQWVPIGSQG 60
+++T+ F+L + C + S H D++Y H+V + ++WVP G Q
Sbjct: 140 DRNTIVFRLHVACERKKKDSKAKGKGKEPQPVEEQHPDELYVNHEVLSGQLEWVPQGDQA 199
Query: 61 --DMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
+ + P + DI++AKLRPG EI++ + AVKS+G+DHAKF PVATA YRLLP I
Sbjct: 200 SYEPFIKKRPAPTNPDIVLAKLRPGQEIEMELHAVKSVGKDHAKFCPVATASYRLLPHII 259
Query: 119 LTQE--IEGEMAQRLQTMFSPGVISIEKKPNA 148
L + + E A++ Q F+PGVI ++ K A
Sbjct: 260 LNPDKPVPPEYAEKFQKCFAPGVIKVDPKTKA 291
>gi|444321150|ref|XP_004181231.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
gi|387514275|emb|CCH61712.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Query: 13 EQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCTK+ + + +Y V+ +D+++ P G Q + + + V P
Sbjct: 128 DENTIVLSLNVKCTKNDKAPKDCTDPKILYNNAHVYARDLKFEPQGKQVETFANCPVVPT 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + IG DHAKFSPVATA YRLLP I +T+ I G+ A++
Sbjct: 188 DPDILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPHINITEPIRGKDAEKF 247
Query: 132 QTMFSPGVISIE 143
Q F+PGVI I+
Sbjct: 248 QKCFTPGVIGIK 259
>gi|19113623|ref|NP_596831.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe 972h-]
gi|13124507|sp|O94616.1|RPAC1_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=DNA-directed RNA polymerases I and III 40 kDa
polypeptide; Short=AC40; AltName: Full=RPC39
gi|5531859|gb|AAD44503.1|AF082512_1 RNA polymerase subunit Rpc40 [Schizosaccharomyces pombe]
gi|4490662|emb|CAB38687.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe]
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces pombe]
Length = 348
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 9/139 (6%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADD-----MYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
DT+ F L KC F+ ++ D+ +Y +V++ D+ W P G Q + + + +
Sbjct: 137 DTVVFSLNKKC----EFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIR 192
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
++ DI++AKLRPG EID+ A+ IG+DHAKFSPVATA YRLLP I + IEGE A
Sbjct: 193 VVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAV 252
Query: 130 RLQTMFSPGVISIEKKPNA 148
+ Q F GVI +E+ P+
Sbjct: 253 KFQKCFPKGVIELEEGPDG 271
>gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 9/139 (6%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADD-----MYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
DT+ F L KC F+ ++ D+ +Y +V++ D+ W P G Q + + + +
Sbjct: 136 DTVVFSLNKKC----EFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIR 191
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
++ DI++AKLRPG EID+ A+ IG+DHAKFSPVATA YRLLP I + IEGE A
Sbjct: 192 VVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAV 251
Query: 130 RLQTMFSPGVISIEKKPNA 148
+ Q F GVI +E+ P+
Sbjct: 252 KFQKCFPKGVIELEEGPDG 270
>gi|331225845|ref|XP_003325593.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304583|gb|EFP81174.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 359
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHD 73
+T+ F+L + C ++ + +Y+ V T+ ++W P G Q DM+ S P+ +
Sbjct: 146 NTIVFKLVVNCRRNPHVPKTEKDPLKLYQNSLVTTEALEWEPKGDQVDMFGSEPPRPVQN 205
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DI++ K+RPG EI M VK I +DHAKFSPVATA YRLLP I + + I + Q+
Sbjct: 206 DIVLVKMRPGQEIRAEMHCVKGIAKDHAKFSPVATASYRLLPHIVIHEPIPEPDCLKFQS 265
Query: 134 MFSPGVISIEKKPNAG 149
FSPGVI I P G
Sbjct: 266 CFSPGVIEIVNGPKGG 281
>gi|320591803|gb|EFX04242.1| DNA-directed RNA polymerase 1 and 3 subunit [Grosmannia clavigera
kw1407]
Length = 376
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T++ +L+++CT++ S + + +Y V+ +DI++VP G+Q ++ + + P++
Sbjct: 152 NTIKLKLQVECTRNRSAAPGETDPLKLYHNAHVYARDIEFVPEGNQPSVFSGENAIRPVN 211
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DIL+AKLRPG ID+ M K IG DHAKFSPV TA YRLLP IT+ Q I G A +
Sbjct: 212 PDILVAKLRPGQAIDIEMHMHKGIGSDHAKFSPVCTASYRLLPTITILQPILGADAVKFA 271
Query: 133 TMFSPGVISIEK 144
+ F GVI +EK
Sbjct: 272 SCFPDGVIGLEK 283
>gi|170087654|ref|XP_001875050.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650250|gb|EDR14491.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 353
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ F++K+ C ++ + S+ D+ Y H+V + + W P G Q +++ + P
Sbjct: 129 DRNTIVFEIKLTCERNPKAKKDSTDPDESYINHEVLSSHLVWKPAGEQEEVFAGNPPAPT 188
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ +I++AKLRPG ++ V + A+K +G+DHAK+ PVATA YRLLP I + + I + ++
Sbjct: 189 NPNIVLAKLRPGQDVHVELHAMKGVGKDHAKYCPVATASYRLLPHIKIKKPIPPHLGEKF 248
Query: 132 QTMFSPGVISIEKK 145
Q FSPGVI I+ +
Sbjct: 249 QKCFSPGVIKIDPR 262
>gi|389739703|gb|EIM80896.1| hypothetical protein STEHIDRAFT_105319 [Stereum hirsutum FP-91666
SS1]
Length = 369
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
+P +++T+ F+L + C ++ S S+ ++Y H+V + ++W P G Q +++++ +
Sbjct: 139 QPTDRNTVVFKLNVVCERNPSAPKDSTDPFELYTNHEVLSSHLKWEPAGEQATVFEAASL 198
Query: 69 --GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL--TQEIE 124
P + +I++ KLRPG EIDV M AVK + +DHAKF VATA YRLLP I L ++ +
Sbjct: 199 VPAPTNGNIVLNKLRPGQEIDVEMHAVKGVAKDHAKFQAVATASYRLLPLIILNPSKPVP 258
Query: 125 GEMAQRLQTMFSPGVISIEKK 145
+A + Q FSPGVI ++ K
Sbjct: 259 PHLATKFQQCFSPGVIRVDPK 279
>gi|367001448|ref|XP_003685459.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
gi|357523757|emb|CCE63025.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L KCT++ ++ +Y V+ +D+++ P G Q +++ V I
Sbjct: 128 DENTIVITLDAKCTRNPDAPKDATDPKVLYRNAHVYARDLKFEPQGKQAELFADQPVEAI 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DILIAKLRPG EI + + IG DHAKFSPVATA YRLLP I +T I GE A+R
Sbjct: 188 DPDILIAKLRPGQEISLRAHCILGIGGDHAKFSPVATASYRLLPHINITSPISGESAKRF 247
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I K A V
Sbjct: 248 QKCFPSGVIGINDKDEAFV 266
>gi|116180930|ref|XP_001220314.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
gi|88185390|gb|EAQ92858.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGP 70
+ +T+ +L+++C + + + + +Y+ V+ +DI++ P+G Q + +D + P
Sbjct: 147 DNNTVSLRLEVQCEHNEKAAAGETDPTKLYKNAHVYARDIEFCPVGRQDKYFSGADAIAP 206
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
++ DILIAKLRPG EI ++M K +G DH+KFSPVATA YRL+P I++ + I G+ A++
Sbjct: 207 VNPDILIAKLRPGQEISLSMHMHKGVGSDHSKFSPVATASYRLMPVISIERPILGKDAEK 266
Query: 131 LQTMFSPGVISIEK 144
F PGVI +EK
Sbjct: 267 FMRCFPPGVIKLEK 280
>gi|410075079|ref|XP_003955122.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
gi|372461704|emb|CCF55987.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
Length = 334
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ + + +Y V+ D+++ P G Q + + ++ V P
Sbjct: 128 DENTIVLTLNVKCTRNPDAPRDCTDPNILYRNSNVYASDLKFEPQGKQVETFANNAVVPC 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
IL+AKLRPG EI + + IG DHAKFSPVATA YRLLP I +T+ I GE A+R
Sbjct: 188 DPKILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPHIEITEPITGESAKRF 247
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I++ +A V
Sbjct: 248 QKCFPAGVIGIKENGDAYV 266
>gi|310800375|gb|EFQ35268.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 372
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+Q +L+++CT++ + + + + V+ KDI++VP G Q + + D + P++
Sbjct: 147 NTVQLRLRVECTRNPDAAPGETDPNKAFLNSSVYAKDIEFVPTGRQLEFFSGEDAIRPVN 206
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DIL+AKLRPG I++ M K IG DHAKFSPVATA YRL+P I +T+ I G+ A++
Sbjct: 207 PDILVAKLRPGQCIELDMHMHKGIGADHAKFSPVATASYRLMPTINITRPILGQDAEKFA 266
Query: 133 TMFSPGVISIEK 144
F GVI I+K
Sbjct: 267 KCFPEGVIGIDK 278
>gi|50418823|ref|XP_457932.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
gi|49653598|emb|CAG85988.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
Length = 335
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L + CTK+ S+ ++Y V+ KD+++ P G Q +++K++ V
Sbjct: 129 DENTIVMSLDVSCTKNPHPPQGSTDPKELYRNSHVYAKDLKFEPQGRQLEIFKNNPVVAA 188
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRP EI + + +G DHAKFSPVATA YRL+P IT+T+ I+GE +R
Sbjct: 189 DPDILLAKLRPNQEISLRAHCILGVGSDHAKFSPVATASYRLMPVITITEPIKGESGKRF 248
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I K A V
Sbjct: 249 QKCFPSGVIDINKNGEAVV 267
>gi|317026864|ref|XP_001399683.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
niger CBS 513.88]
gi|350634564|gb|EHA22926.1| hypothetical protein ASPNIDRAFT_206792 [Aspergillus niger ATCC
1015]
Length = 373
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
P + +T+ +L ++CTK+ + + +Y+ V+ KDI + P+G Q + D +
Sbjct: 144 PADYNTIVLRLDVECTKNPNADPEETDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDDAI 203
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++ DIL+AKLRPG I++ + +K IG DHAKFSPVATA YRLLP I + + I G+ A
Sbjct: 204 QPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPIIGDDA 263
Query: 129 QRLQTMFSPGVISIEK 144
++ F GVI +EK
Sbjct: 264 KKFAKCFPSGVIGLEK 279
>gi|134056600|emb|CAK47675.1| unnamed protein product [Aspergillus niger]
Length = 359
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
P + +T+ +L ++CTK+ + + +Y+ V+ KDI + P+G Q + D +
Sbjct: 144 PADYNTIVLRLDVECTKNPNADPEETDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDDAI 203
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++ DIL+AKLRPG I++ + +K IG DHAKFSPVATA YRLLP I + + I G+ A
Sbjct: 204 QPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPIIGDDA 263
Query: 129 QRLQTMFSPGVISIEK 144
++ F GVI +EK
Sbjct: 264 KKFAKCFPSGVIGLEK 279
>gi|358365562|dbj|GAA82184.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 373
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 6/138 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
P + +T+ +L ++CTK+ + DD +Y+ V+ KDI + P+G Q + D
Sbjct: 144 PADYNTIVLRLDVECTKNPN--ADPEEDDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDD 201
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DIL+AKLRPG I++ + +K IG DHAKFSPVATA YRLLP I + + I G+
Sbjct: 202 AIQPVNPDILVAKLRPGQSIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPIIGD 261
Query: 127 MAQRLQTMFSPGVISIEK 144
A++ F GVI +EK
Sbjct: 262 DAKKFAKCFPSGVIGLEK 279
>gi|409045867|gb|EKM55347.1| hypothetical protein PHACADRAFT_161317 [Phanerochaete carnosa
HHB-10118-sp]
Length = 364
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 88/135 (65%), Gaps = 7/135 (5%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
P +++TL F+L++ C ++ S + +D +V + D+ WVP G Q +++ ++ GP
Sbjct: 132 PSDRNTLVFRLQVTCERAPKGSGKEYIND-----EVKSGDLVWVPQGEQEEVFANNPPGP 186
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE--IEGEMA 128
+ DI++AKLRPG EID+ + A+K +G++HAK+SPVATA YRL P I L + + +A
Sbjct: 187 TNKDIVLAKLRPGQEIDMELHAIKGVGKEHAKWSPVATASYRLHPLILLNPQKPVPTHLA 246
Query: 129 QRLQTMFSPGVISIE 143
++ FSPGV+ ++
Sbjct: 247 KKFAGCFSPGVVQVD 261
>gi|366988647|ref|XP_003674091.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
gi|342299954|emb|CCC67710.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
Length = 335
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ L +KCT++ ++ +Y V+ D+++ P G Q + + + V P
Sbjct: 128 DTNTIVLTLNVKCTRNPDAPKDATDPKILYRNSSVYASDLKFEPQGKQIETFAGTPVVPC 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + G DHAKFSPV+TA YRLLP I +T+ I+GE+A++
Sbjct: 188 DQDILLAKLRPGQEISLRAHCILGTGGDHAKFSPVSTASYRLLPHINITKPIKGELAEKF 247
Query: 132 QTMFSPGVISIEK 144
Q F PGVI I+
Sbjct: 248 QKCFLPGVIGIDN 260
>gi|156849157|ref|XP_001647459.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
gi|156118145|gb|EDO19601.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
Length = 335
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT + + +Y+ V+ +D+++ P G Q + + + V P
Sbjct: 128 DENTIVLSLNVKCTMNPDAPKDCTDPKILYKNSNVYARDLKFEPQGKQVESFANYPVVPA 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ DIL+ KLRPG EI + + IG DHAKFSPVATA YRL+P I +TQ I GE A++
Sbjct: 188 NPDILLCKLRPGQEISLKAHCILGIGSDHAKFSPVATASYRLMPHINITQPITGEDAKKF 247
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F PGVI I A V
Sbjct: 248 QKYFMPGVIGINDNGEAYV 266
>gi|451849744|gb|EMD63047.1| hypothetical protein COCSADRAFT_92552 [Cochliobolus sativus ND90Pr]
Length = 376
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 8/141 (5%)
Query: 11 PCEQDTLQFQLKIKCTKSA-----SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
P + +T+ +L+++C + + + D +Y H V+ KDI++ PIG Q +++ S
Sbjct: 142 PTDWNTVVLRLEVECKWQEGGLQRAVAGETDPDKLYVGHNVYAKDIEFKPIGRQAELFSS 201
Query: 66 S---DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
++ + DILIAK+RPG I+++M A+K IG+DHAKFSPVATA YRL+P I +T+
Sbjct: 202 EQGKEIRSTNPDILIAKMRPGQSINLSMHAIKGIGQDHAKFSPVATASYRLMPTIDITKP 261
Query: 123 IEGEMAQRLQTMFSPGVISIE 143
I G A++ F GVI ++
Sbjct: 262 IVGPDAKKFARCFPRGVIRLD 282
>gi|345566662|gb|EGX49604.1| hypothetical protein AOL_s00078g93 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
Query: 10 EPCEQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS-D 67
E + +T+ LK+ CT++ A+ + + +Y V+ +DI++ P G Q + + +
Sbjct: 138 EATDFNTVVMTLKVACTRNHATPNTETDPSKLYFNSSVYARDIKFAPQGRQSSWFSGAGE 197
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P++ DIL+AKLRPG EID+ + V IG+DHAKFSPVATA YRLLP I + + I GE
Sbjct: 198 IRPVNPDILLAKLRPGQEIDLEIHCVLGIGQDHAKFSPVATASYRLLPSIKIKKPITGED 257
Query: 128 AQRLQTMFSPGVISIEKKPNAG 149
A++ F GV ++K G
Sbjct: 258 AEKFVNCFPKGVAEVQKDKKTG 279
>gi|452001561|gb|EMD94020.1| hypothetical protein COCHEDRAFT_1222623 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 8/141 (5%)
Query: 11 PCEQDTLQFQLKIKCTKSA-----SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
P + +T+ +L+++C + + + D +Y H V+ KDI++ PIG Q +++ S
Sbjct: 142 PTDWNTVVLRLEVECKWQEGGLQRAVAGETDPDKLYVGHNVYAKDIEFKPIGRQAELFSS 201
Query: 66 S---DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
++ + DILIAK+RPG I+++M A+K IG+DHAKFSPVATA YRL+P I +T+
Sbjct: 202 EQGKEIRSTNPDILIAKMRPGQSINLSMHAIKGIGQDHAKFSPVATASYRLMPTIDITKP 261
Query: 123 IEGEMAQRLQTMFSPGVISIE 143
I G A++ F GVI ++
Sbjct: 262 IVGPDAKKFARCFPRGVIRLD 282
>gi|213403846|ref|XP_002172695.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
gi|212000742|gb|EEB06402.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
Length = 349
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 15 DTLQFQLKIKC--TKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
DT+ F L +KC K A+ + +Y +V + ++ W P G Q + + + + ++
Sbjct: 137 DTVVFSLNVKCDFNKEAA-PGETDPKKLYLNSEVLSGELVWKPQGRQAERFADNPLTVVN 195
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
+I++AKLRPG EID+ A+ IG+DHAKFSPV+TA YRLLP I + + IEGE A + Q
Sbjct: 196 PNIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVSTASYRLLPAIHILEPIEGEDAIKFQ 255
Query: 133 TMFSPGVISIEKKPNA 148
F GVI +E PN
Sbjct: 256 KCFPAGVIELEDGPNG 271
>gi|392593120|gb|EIW82446.1| hypothetical protein CONPUDRAFT_136940 [Coniophora puteana
RWD-64-598 SS2]
Length = 358
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 85/134 (63%), Gaps = 3/134 (2%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDM-YEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++TL F+L++ CT++ + M Y +V + D++WVP G Q +++ ++ P
Sbjct: 132 DRNTLVFKLEVTCTRNRNTPKDVTDPKMLYNNSEVLSSDLRWVPQGEQEEIFAANIPTPS 191
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE--IEGEMAQ 129
+ +I++AKLRPG E+++ + AVK +G+DHAKF VATA YRLLP + L E I A
Sbjct: 192 NPNIVLAKLRPGQEVNMELHAVKGVGKDHAKFCAVATASYRLLPLVVLNPEKPIPPSSAH 251
Query: 130 RLQTMFSPGVISIE 143
+ Q FSPGVI ++
Sbjct: 252 KFQKCFSPGVIRVD 265
>gi|452821148|gb|EME28182.1| DNA-directed RNA polymerase III subunit C5 [Galdieria sulphuraria]
Length = 300
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 82/122 (67%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
EP E +T+ +L+++C ++ + +++Y V+++D+ W P+G+Q + + + +
Sbjct: 127 EPRENNTIVLKLQVECKQNPQARPGAEPEELYINSNVYSRDLVWEPLGNQLEKFGKNGIR 186
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P+ +DILIAKLRP I++ +K IG++HAK+SPVATA+Y +LP++ L Q+I E A+
Sbjct: 187 PVSEDILIAKLRPKQRIELEARCIKGIGKEHAKWSPVATAYYAMLPQVELLQDILDEDAR 246
Query: 130 RL 131
RL
Sbjct: 247 RL 248
>gi|332030550|gb|EGI70238.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Acromyrmex
echinatior]
Length = 371
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ DTL+++LK+ C + +S +DMY+ KV++KDI+WVPIG Q + +K+ +G +
Sbjct: 77 DNDTLRYELKVTCNINPQAPKNSRLPEDMYKNSKVYSKDIKWVPIGRQAEKFKAEQIGIL 136
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPV 106
+DILI K+RPGHEI + M AVK IG+DHAKFSPV
Sbjct: 137 ENDILICKMRPGHEIHLFMHAVKGIGKDHAKFSPV 171
>gi|119189173|ref|XP_001245193.1| hypothetical protein CIMG_04634 [Coccidioides immitis RS]
gi|392868091|gb|EAS33833.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 382
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD-- 67
+ +T+ +L ++CTK+ + DD +Y V+ KDI + P+G Q +
Sbjct: 147 DSNTIVLKLNVECTKNQN--ARPDEDDPTKLYNNAHVYAKDIVFEPVGRQAAFFSGPHGV 204
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P + DIL+AKLRPG +ID+ M +K IG+DHAKFSPVATA YRLLP I +T+ I G
Sbjct: 205 IQPAYPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGND 264
Query: 128 AQRLQTMFSPGVISIEK 144
A + F GVI IE+
Sbjct: 265 AVKFANCFPKGVIGIEQ 281
>gi|303323289|ref|XP_003071636.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111338|gb|EER29491.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035278|gb|EFW17220.1| RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 382
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD-- 67
+ +T+ +L ++CTK+ + DD +Y V+ KDI + P+G Q ++
Sbjct: 147 DSNTIVLKLNVECTKNQN--ARPDEDDPTKLYNNAHVYAKDIVFEPVGRQAAIFSGPHGV 204
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P + DIL+AKLRPG +ID+ M +K IG+DHAKFSPVATA YRLLP I +T+ I G
Sbjct: 205 IQPAYPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGND 264
Query: 128 AQRLQTMFSPGVISIEK 144
A F GVI IE+
Sbjct: 265 AVNFANCFPKGVIGIEQ 281
>gi|408400667|gb|EKJ79744.1| hypothetical protein FPSE_00024 [Fusarium pseudograminearum CS3096]
Length = 381
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 9 YEPC-EQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSS 66
Y C + +T++ +L + CT + S + + Y V+ +DI +VP G Q + +
Sbjct: 149 YAGCFDWNTVRLELNVTCTVNEEASPAENDPLKAYHNAHVYARDIVFVPTGRQAEYFSGE 208
Query: 67 D-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
+ + P + DILIAKLRP I++ M K IG DHAKFSPVATA YRLLP IT+TQ I G
Sbjct: 209 NAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLPTITITQPIMG 268
Query: 126 EMAQRLQTMFSPGVISIEK 144
A++ F GVI +EK
Sbjct: 269 ADAEKFAKCFPKGVIGLEK 287
>gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gibberella zeae PH-1]
Length = 381
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 9 YEPC-EQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSS 66
Y C + +T++ +L + CT + S + + Y V+ +DI +VP G Q + +
Sbjct: 149 YAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVYARDIVFVPTGRQAEYFSGE 208
Query: 67 D-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
+ + P + DILIAKLRP I++ M K IG DHAKFSPVATA YRLLP IT+TQ I G
Sbjct: 209 NAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLPTITITQPILG 268
Query: 126 EMAQRLQTMFSPGVISIEK 144
A++ F GVI +EK
Sbjct: 269 ADAEKFAKCFPKGVIGLEK 287
>gi|406694412|gb|EKC97739.1| hypothetical protein A1Q2_07938 [Trichosporon asahii var. asahii
CBS 8904]
Length = 278
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 69/105 (65%)
Query: 40 MYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRD 99
+Y V+T ++WVP G Q YK + P+ DDIL+ KLRPG +D+ FA K +G D
Sbjct: 91 LYYDSNVYTGMMKWVPSGQQKSKYKGKEPRPVLDDILLVKLRPGQMVDLHCFARKGVGAD 150
Query: 100 HAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEK 144
HAK+SPVATA YRLLP I L + I E ++ ++ F+PGVI +EK
Sbjct: 151 HAKYSPVATASYRLLPHIILREPIPLEDQEKFKSCFAPGVIELEK 195
>gi|403213911|emb|CCK68413.1| hypothetical protein KNAG_0A07600 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D++L + + +++T+ L +KCT++ + + +Y+ V+ +D+++ P G Q
Sbjct: 116 IDQSLSEEEKFTDENTVVLTLNVKCTRNLNAPKDCTDPKILYKNSSVYARDLRFEPQGKQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ + V P DIL+AKLRP EI + + + IG DHAKFSPVATA YRLLP I +
Sbjct: 176 LETFADCPVVPSDPDILLAKLRPNQEISLRVHCILGIGSDHAKFSPVATASYRLLPHINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I GE A+R Q F GVI I+ + A V
Sbjct: 236 LEPITGESAKRFQACFPQGVIGIDSEGKAVV 266
>gi|367019632|ref|XP_003659101.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
gi|347006368|gb|AEO53856.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+ +L++KC + + + + +Y+ V+ +DI++ P+G Q + D + P++
Sbjct: 149 NTVSLRLEVKCEHNENAAPGETDPTKLYKHAHVYARDIEFCPVGRQTKYFSGDDAIAPVN 208
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG EI +TM K +G DHAKFSPVATA YRL+P I + + I G A++
Sbjct: 209 PDILIAKLRPGQEISLTMHMHKGVGSDHAKFSPVATASYRLMPVIKIERPILGADAEKFA 268
Query: 133 TMFSPGVISIEK 144
F GVI++EK
Sbjct: 269 RCFPRGVIALEK 280
>gi|409050971|gb|EKM60447.1| hypothetical protein PHACADRAFT_179740 [Phanerochaete carnosa
HHB-10118-sp]
Length = 378
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 87/135 (64%), Gaps = 7/135 (5%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
P +++TL F+L+ C ++ S + +D +V + D+ WVP G Q +++ ++ GP
Sbjct: 146 PNDRNTLVFRLQATCERAPKGSGKEYIND-----EVKSGDLVWVPQGEQEEVFANNPPGP 200
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE--IEGEMA 128
+ DI++AKLRPG EID+ + A+K +G++HAK+SPVATA YRL P I L + + +A
Sbjct: 201 TNKDIVLAKLRPGQEIDMELHAIKGVGKEHAKWSPVATASYRLHPLILLNPQKPVPTHLA 260
Query: 129 QRLQTMFSPGVISIE 143
++ FSPGV+ ++
Sbjct: 261 KKFAGCFSPGVVQVD 275
>gi|159129762|gb|EDP54876.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus A1163]
Length = 414
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
P + +T+ +L ++CT++ + + DD +Y+ V+ KDI + P+G Q +
Sbjct: 185 PADYNTIVLRLDVECTENPNAAPGE--DDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDG 242
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG +ID+ + +K IG DHAKFSPVATA YRL+P I + + I GE
Sbjct: 243 AIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGE 302
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 303 DAKKFAKCFPKGVIELE 319
>gi|425767889|gb|EKV06440.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum Pd1]
gi|425769702|gb|EKV08188.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum PHI26]
Length = 374
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDMYKSSD- 67
PC+ +T+ L ++C K+ ++ D +Y V+ KD+ ++P+G Q + Y D
Sbjct: 145 PCDFNTIVLHLDVECYKN-EYADKDEQDPRKLYTNAHVYAKDLMYMPVGRQ-EQYFVGDG 202
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG +I++ + K IG DHAKFSPVATA YRLLP I + + I GE
Sbjct: 203 AIAPVNPDILIAKLRPGQKIEMELHCQKGIGADHAKFSPVATASYRLLPDINILRPIIGE 262
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 263 DAKKFAKCFPKGVIGLE 279
>gi|146322984|ref|XP_755705.2| DNA-directed RNA polymerase I and III subunit Rpc40 [Aspergillus
fumigatus Af293]
gi|129558558|gb|EAL93667.2| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus Af293]
Length = 374
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
P + +T+ +L ++CT++ + + DD +Y+ V+ KDI + P+G Q +
Sbjct: 145 PADYNTIVLRLDVECTENPNAAPGE--DDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDG 202
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG +ID+ + +K IG DHAKFSPVATA YRL+P I + + I GE
Sbjct: 203 AIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGE 262
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 263 DAKKFAKCFPKGVIELE 279
>gi|340924182|gb|EGS19085.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 374
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+ +L++KC ++ + + +Y+ V+ +DI++ P+G Q + + + P++
Sbjct: 149 NTVSLRLEVKCEENPDAAPGETDPTKLYKHAHVYARDIEFCPVGRQHKYFSGENAIRPVN 208
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG EI ++M K +G DHAKFSPVATA YRLLP I + + I G+ A++ Q
Sbjct: 209 PDILIAKLRPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPVIDIIEPILGKDAEKFQ 268
Query: 133 TMFSPGVISIEK 144
F GVI +E+
Sbjct: 269 KCFPKGVIGLER 280
>gi|254574330|ref|XP_002494274.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|238034073|emb|CAY72095.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|328353904|emb|CCA40301.1| DNA-directed RNA Polymerase III subunit C5 [Komagataella pastoris
CBS 7435]
Length = 335
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L + CTK+ +++ +++Y V+++D+++ P G Q + + S V
Sbjct: 128 DENTVVISLNVACTKNPHPAKNNNDPENLYRNSIVYSRDLKFEPQGRQVETFADSPVVAA 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DI+IAKLRPG EI + + +G DHAKFSPV TA YRLLP I +TQ I G+ A++
Sbjct: 188 DPDIVIAKLRPGQEISLKAHCILGLGSDHAKFSPVCTASYRLLPVINITQPITGKDAEKF 247
Query: 132 QTMFSPGVISIEK 144
Q F GVI+IE
Sbjct: 248 QKCFPKGVIAIEN 260
>gi|307103493|gb|EFN51752.1| hypothetical protein CHLNCDRAFT_27642 [Chlorella variabilis]
Length = 381
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 20/133 (15%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ-----GDMYKS 65
P EQ+T+ +LK++C + +S +D KV+++D+QW+P GS+ + S
Sbjct: 161 PSEQNTIVLKLKVECRR---LPNSGMEND-----KVYSRDLQWLPEGSEMPDETSCRFAS 212
Query: 66 S-------DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
S DV P+HDDILIAKLRPG I++ +K +G DHAK+SPVAT +YRL+P++
Sbjct: 213 SQAALVPEDVRPVHDDILIAKLRPGQAIELECHCIKGVGDDHAKWSPVATTWYRLMPEVV 272
Query: 119 LTQEIEGEMAQRL 131
L Q+ G++A+ L
Sbjct: 273 LLQQPRGKIAEEL 285
>gi|219121193|ref|XP_002185825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582674|gb|ACI65295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 319
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 19/148 (12%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYE----------------KHKVFTKDIQWV 54
P +++T+ F+L + C + + H D +E KH V++KD+ WV
Sbjct: 83 PTDRNTVVFRLGVSCGSDPNKGKAKHKADSHENANDAAEADQDERPYTKH-VYSKDLVWV 141
Query: 55 PIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
P G Q + + D+ +HDDILIAKLRPG I++ + +G+DHAKFSPVATA YRL+
Sbjct: 142 PQGDQEE--RLQDICAMHDDILIAKLRPGQSIELEVHGRVGVGKDHAKFSPVATASYRLM 199
Query: 115 PKITLTQEIEGEMAQRLQTMFSPGVISI 142
P I L +++ E+A L ++ PGV I
Sbjct: 200 PHIELLRDVYDEVADELVHVYEPGVFEI 227
>gi|393234912|gb|EJD42471.1| hypothetical protein AURDEDRAFT_115078 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
+++TL F+L++ C + +H D +Y+ V++K + WVP G Q +
Sbjct: 129 TDRNTLVFRLQVTCERRKG-AHKDETDPEKLYKDSNVYSKHLTWVPQGEQATFFADHPPR 187
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P +++IL+AKLRPG EI+V + A+K G +HAK+SPV TA YRLLP IT+ + I +
Sbjct: 188 PCNENILLAKLRPGQEIEVELHAIKGRGNEHAKWSPVGTASYRLLPHITIHKPIPSHLVD 247
Query: 130 RLQTMFSPGVISIEKKPNA 148
+ F PGVI + K NA
Sbjct: 248 KFAGCFPPGVIGV--KTNA 264
>gi|189203213|ref|XP_001937942.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985041|gb|EDU50529.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 376
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 11 PCEQDTLQFQLKIKCTK-----SASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
P ++T+ LK KCT + + + + D +Y H V+ KD+++ P G+Q +
Sbjct: 142 PTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHNVYAKDMRFEPNGNQAENLSE 201
Query: 66 SD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
++ + + DILI K+RPG E+++ M A+K IG+DHAKFSPVATA YRL+P I +T+
Sbjct: 202 AEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIGQDHAKFSPVATASYRLMPTIDITKP 261
Query: 123 IEGEMAQRLQTMFSPGVISIEKKPNAGV 150
I G A++ F GVI ++ +A +
Sbjct: 262 IVGADAKKFSRCFPSGVIRLDTVTSADI 289
>gi|225677934|gb|EEH16218.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb03]
Length = 345
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E + +T+ L +KC K+ S +Y V+ KDI + P+G Q + D
Sbjct: 109 ELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKDITFQPVGRQEAYFPEPDG 168
Query: 69 G--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
G P + DIL+AKLRPG +ID+ M VK IG DHAKFSPVATA YRLLP I + + I G+
Sbjct: 169 GIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGK 228
Query: 127 MAQRLQTMFSPGVISIE 143
A + F GVI IE
Sbjct: 229 DAVKFAGCFPEGVIGIE 245
>gi|115384348|ref|XP_001208721.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
gi|114196413|gb|EAU38113.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
Length = 374
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
P + +T+ +L ++CTK+ + + DD +Y V+ KDI + P+G Q + D
Sbjct: 145 PSDYNTIVLRLDVECTKNPNAAKDE--DDPRKLYRNAHVYAKDITFHPVGRQEQFFTGDD 202
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG +I + + +K IG DHAKFSPV TA YRLLP I + + I G+
Sbjct: 203 AIQPVNPDILIAKLRPGQKISMELHCIKGIGADHAKFSPVCTASYRLLPDIKIERPIIGD 262
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 263 DAKKFAKCFPRGVIGLE 279
>gi|119481605|ref|XP_001260831.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
gi|119408985|gb|EAW18934.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
Length = 374
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 85/137 (62%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
P + +T+ +L ++CT++ + + DD +Y+ V+ KDI + P+G Q +
Sbjct: 145 PADYNTIVLRLDVECTENPNAAPGE--DDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDG 202
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG +ID+ + +K IG DHAKFSPVATA YRL+P I + + I GE
Sbjct: 203 AIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGE 262
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GV+ +E
Sbjct: 263 DAKKFAKCFPKGVVELE 279
>gi|396471375|ref|XP_003838857.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
gi|312215426|emb|CBX95378.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
Length = 374
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 15 DTLQFQLKIKCTKS-----ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK-SSDV 68
+T+ +L KC + + + D +Y H V+ +D+ W PIG Q M+ +++
Sbjct: 146 NTIVLRLNKKCEWQDGGLQRAVAGETDPDKLYINHNVYARDMIWEPIGRQAQMFPPGAEI 205
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
+ DILIAK+RPG EI ++M A K IG+DHAKFSPVATA YRLLP I +T+ I G A
Sbjct: 206 RSTNPDILIAKMRPGQEIALSMHAHKGIGQDHAKFSPVATASYRLLPTIDITEPITGPDA 265
Query: 129 QRLQTMFSPGVISIE 143
++ F GVI ++
Sbjct: 266 KKFARCFPRGVIRLD 280
>gi|342874377|gb|EGU76391.1| hypothetical protein FOXB_13069 [Fusarium oxysporum Fo5176]
Length = 381
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 9 YEPC-EQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSS 66
Y C + +T++ +L + CT + S + + Y V+ +DI +VP G Q + +
Sbjct: 149 YAGCFDWNTVRLELNVTCTVNEDASPAENDPLKAYHNAHVYARDIVFVPTGKQVEYFSGE 208
Query: 67 D-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
D + P + DILIAKLRP I++ M K IG DHAKFSPVATA YRLLP IT+T+ I G
Sbjct: 209 DAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLPTITITKPILG 268
Query: 126 EMAQRLQTMFSPGVISIEK 144
A++ F GVI +EK
Sbjct: 269 ADAEKFAKCFPKGVIGLEK 287
>gi|348665187|gb|EGZ05020.1| hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae]
Length = 343
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 7/135 (5%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHK-VFTKDIQWVPIGSQGDMYKSSDV 68
E +++T+ F+L + C F D H V+++D++WVP G+Q + + S +
Sbjct: 119 EATDENTIVFKLDVTC----KFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGS--I 172
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+H+DILIAKLRPG I + K +G+DHAKFSPVATA YRL+PK+ LT++++G A
Sbjct: 173 RPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELTEKVQGADA 232
Query: 129 QRLQTMFSPGVISIE 143
++L G+ IE
Sbjct: 233 KKLVEECQIGLFDIE 247
>gi|326428554|gb|EGD74124.1| RNA polymerase subunit I [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 15 DTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHD 73
+TL F L ++C + + + + + Y H V + DI+W P G+Q D +K++ + P+H+
Sbjct: 122 NTLVFDLDVECKHREGAKAGETDKNKKYINHMVMSSDIKWQPKGNQKDRFKTA-ICPVHE 180
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
DI I +LRPG + + + K +G+ HAK+SPVATA YR P I L Q + G++A RLQ
Sbjct: 181 DIPIVELRPGQRVSMELHCSKGVGKLHAKWSPVATASYRNAPHIVLKQRVTGDLAYRLQQ 240
Query: 134 MFSPGVISI 142
F+ GVI +
Sbjct: 241 CFTDGVIEV 249
>gi|45187904|ref|NP_984127.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|44982688|gb|AAS51951.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|374107343|gb|AEY96251.1| FADR031Cp [Ashbya gossypii FDAG1]
Length = 364
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+DK+L +++T+ L +KCT + S+ ++Y ++ +D+++ P G Q
Sbjct: 146 VDKSLPEAERFTDENTVVLSLNVKCTHNPDAPKGSTDPKELYRNAHIYARDLKFEPQGKQ 205
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ + V P DIL+AKLRPG EI + + + IG DHAKFSPVATA YRL+P I +
Sbjct: 206 LETFAKCPVVPADPDILLAKLRPGQEISLRVHCILGIGSDHAKFSPVATASYRLMPYINI 265
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I G A++ F PGV +I +K A V
Sbjct: 266 VEPITGPDAEKFVKCFPPGVAAINEKGEAFV 296
>gi|363752191|ref|XP_003646312.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889947|gb|AET39495.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+DK+L +++T+ L +KCT + S+ ++Y ++++D+++ P G Q
Sbjct: 116 VDKSLPEAERFTDENTVVMSLNVKCTANPDAPKGSTDPKELYNNAHIYSRDLKFEPQGKQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D + V P DIL+AKLRPG EI + + + +G DHAKFSPV TA YRL+P I +
Sbjct: 176 LDSFAKHPVLPTDPDILLAKLRPGQEISLRVHCILGVGGDHAKFSPVCTASYRLMPHIDI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I+GE A + F PGV +I++K A +
Sbjct: 236 LETIQGEDATKFVKCFPPGVAAIDEKGEAYI 266
>gi|301095581|ref|XP_002896890.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 339
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 7/135 (5%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHK-VFTKDIQWVPIGSQGDMYKSSDV 68
E +++T+ F+L + C F D H V+++D++WVP G+Q + + S +
Sbjct: 115 EATDENTIVFKLDVTC----KFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGS--I 168
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+H+DIL+AKLRPG I + K +G+DHAKFSPVATA YRL+PK+ L +++EG A
Sbjct: 169 RPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDA 228
Query: 129 QRLQTMFSPGVISIE 143
+RL G+ IE
Sbjct: 229 KRLVEECQIGLFDIE 243
>gi|346979352|gb|EGY22804.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
dahliae VdLs.17]
Length = 375
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 15 DTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKS--SDVGPI 71
+T+Q +L+I+CT++ + A + V DI++VP G Q + + + V P
Sbjct: 148 NTIQLRLRIECTRNPDAAPGEIDATKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPT 207
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ DIL+AKLRPG +++ M K IG DHAKFSPVATA YRLLP IT+T+ I G A++
Sbjct: 208 NPDILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRLLPTITITRPILGADAEKF 267
Query: 132 QTMFSPGVISIEK 144
F GVI IE+
Sbjct: 268 ARCFPAGVIGIER 280
>gi|440635104|gb|ELR05023.1| hypothetical protein GMDG_01594 [Geomyces destructans 20631-21]
Length = 375
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHD 73
+T+ +L+I CT++ + + ++ +Y V DI + P+G Q + + D + +
Sbjct: 150 NTITLKLQIACTRNPDAAPGETDSNKLYINSAVHASDIVFEPVGRQPEFFSGDDTITVTN 209
Query: 74 -DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRPG ID+ M A+K IG DHAKFSPVATA YRLLP IT+ + I G A++
Sbjct: 210 PDILIAKLRPGQCIDLDMHAIKGIGADHAKFSPVATASYRLLPTITILKPILGNDAEKFA 269
Query: 133 TMFSPGVISIEK 144
F GVI EK
Sbjct: 270 KCFPKGVIGFEK 281
>gi|301092813|ref|XP_002997258.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262111439|gb|EEY69491.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 343
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 7/135 (5%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHK-VFTKDIQWVPIGSQGDMYKSSDV 68
E +++T+ F+L + C F D H V+++D++WVP G+Q + + S +
Sbjct: 119 EATDENTIVFKLDVTC----KFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGS--I 172
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+H+DIL+AKLRPG I + K +G+DHAKFSPVATA YRL+PK+ L +++EG A
Sbjct: 173 RPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDA 232
Query: 129 QRLQTMFSPGVISIE 143
+RL G+ IE
Sbjct: 233 KRLVEECHIGLFDIE 247
>gi|255933139|ref|XP_002558040.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582659|emb|CAP80852.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 84/137 (61%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDMYKSSD- 67
PC+ +T+ L ++C K+ ++ D +Y V+ KD+ ++P+G Q + Y D
Sbjct: 145 PCDFNTIVLHLDVECYKN-EYADKDEQDPRKLYTNAHVYAKDLMYMPVGRQ-EQYFVGDG 202
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DILIAKLRPG +I++ + K IG DHAKFSPVATA YRLLP I + + I G+
Sbjct: 203 AIAPVNPDILIAKLRPGQKIEMELHCQKGIGADHAKFSPVATASYRLLPDIKIERPIIGD 262
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 263 DAKKFAKCFPKGVIGLE 279
>gi|453085895|gb|EMF13938.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Mycosphaerella populorum SO2202]
Length = 393
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 11 PCEQDTLQFQLKIKCT-----------KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
P + +T+ LK++C K + S+ + Y V+ I + P G +
Sbjct: 164 PSDLNTVVLNLKVECRWKTVEEDGVDGKKLAREGSTDPTEKYVNSNVYAHQITFEPQGQR 223
Query: 60 GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
+ S + + P++ DILIAKLRPG I +TM VK IG DHAKFSPVATA YRLLP I
Sbjct: 224 QPEFFSGENAIRPVNPDILIAKLRPGQRIHMTMHCVKGIGADHAKFSPVATASYRLLPDI 283
Query: 118 TLTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
+TQ I G A+ Q F GVI +E+ P +G
Sbjct: 284 KITQPIVGADAKAFQKCFPKGVIGLEEDPESG 315
>gi|402080745|gb|EJT75890.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 373
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GPIH 72
+T+ +L ++C+++ A+ + + +Y V+ +DI+++P G Q D + V GP++
Sbjct: 148 NTVNLRLSVQCSRNEAAAAGETDPAKLYHHANVYARDIEFLPEGQQADWFSGDGVIGPVN 207
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DIL+AKLRPG I++ M A G DHAKFSPV TA YRL+P I +T+ I G A++ +
Sbjct: 208 PDILLAKLRPGQAIELEMHAHVGYGWDHAKFSPVCTASYRLMPTIDITRPILGADAEKFR 267
Query: 133 TMFSPGVISIEK 144
F GVI + K
Sbjct: 268 DCFPDGVIGLRK 279
>gi|407929549|gb|EKG22366.1| DNA-directed RNA polymerase 30-40kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 377
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 15 DTLQFQLKIKCT-----KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
+T+ +L ++C + + + ++ V+ I+++P G Q +++ + +
Sbjct: 149 NTIVLELNVQCEWHPDGREMAKKGETDPKKLFINSSVYAHQIKFIPTGRQAELFAGENAI 208
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P++ DILIAKLRPG I+++M +K IG DHAKFSPVATA YRLLP I +TQ I G A
Sbjct: 209 QPVNPDILIAKLRPGQSINLSMHCIKGIGSDHAKFSPVATATYRLLPHIQITQPILGAHA 268
Query: 129 QRLQTMFSPGVIS 141
++ F PGVI+
Sbjct: 269 EKFARCFPPGVIA 281
>gi|302923338|ref|XP_003053654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734595|gb|EEU47941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 381
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T++ +L + CT + S + + Y V+ +DI +VP G Q + + D + P +
Sbjct: 156 NTVRLELNVTCTVNPDASPTENDPLKAYNNAHVYARDIVFVPTGRQAEYFDGEDAIAPTN 215
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRP I++ M K IG DHAKFSPVATA YRLLP IT+T+ I G A +
Sbjct: 216 PDILIAKLRPRQTINLAMHMHKGIGADHAKFSPVATASYRLLPTITITKPILGADADKFA 275
Query: 133 TMFSPGVISIEK 144
F GVI +E+
Sbjct: 276 KCFPQGVIGLER 287
>gi|340520524|gb|EGR50760.1| predicted protein [Trichoderma reesei QM6a]
Length = 377
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDM--YEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPI 71
+T++ +L + CT + S + D + Y V+ KDI +VP G Q + + + + P+
Sbjct: 152 NTVRLELNVTCTVNPDAS-PTETDPLKAYNHAHVYAKDIVFVPTGRQVEYFSGENAIAPV 210
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ DILIAKLRP I++ M K IG DH+KFSPVATA YRLLP I +T+ I G A++
Sbjct: 211 NPDILIAKLRPKQSINLAMHMHKGIGADHSKFSPVATASYRLLPLINITRPIIGADAEKF 270
Query: 132 QTMFSPGVISIEK 144
Q F GVI +EK
Sbjct: 271 QRCFPEGVIGLEK 283
>gi|156368414|ref|XP_001627689.1| predicted protein [Nematostella vectensis]
gi|156214606|gb|EDO35589.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Query: 16 TLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD 74
TL F+LK+KC K+ + ++ D++Y KV T ++W+P Q + D+ P+ +
Sbjct: 134 TLVFELKVKCIKNKNAPKDATDPDELYINSKVTTDHLKWIPTPQQAQKFGPQDIRPLSNV 193
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPV--ATAFYRLLPKITLTQEIEGEMAQRLQ 132
+ L+ E+D+ M AVK +G+DHAKFSPV +TA YRLLP+ITL + E E+A +L
Sbjct: 194 VFFFTLQ---ELDIKMHAVKGVGKDHAKFSPVGKSTASYRLLPEITLLKPCEDELADKLA 250
Query: 133 TMFSPGVISIE 143
FSPGVI ++
Sbjct: 251 ACFSPGVIKVK 261
>gi|150951291|ref|XP_001387588.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
gi|149388472|gb|EAZ63565.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
Length = 336
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E +T+ L + CTK+ + +S++ ++Y V+ +D+++ P G Q +++K V
Sbjct: 130 EDNTIVLTLDVVCTKNPHAPKNSTNPKELYRNAHVYARDLKFEPHGKQAELFKDLPVVAA 189
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DILIAKLRPG EI + + +G DHAKFSPV+TA YRL+P I + + I G+ A R
Sbjct: 190 DPDILIAKLRPGQEISLRAHCILGVGCDHAKFSPVSTASYRLMPVIDIVEPIRGDSAVRF 249
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I A V
Sbjct: 250 QKCFPSGVIGINADGEAYV 268
>gi|320582291|gb|EFW96508.1| RNA polymerase III (C) subunit [Ogataea parapolymorpha DL-1]
Length = 335
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L + CTK+ + ++ +++Y V+ +D+++ P G Q + + V P
Sbjct: 128 DENTIVLSLDVACTKNPNAVPGNNDPENLYRNSNVYARDLKFEPNGRQVTQFANCPVVPC 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DILIAKLRP EI + + V IG DHAKFSPV+TA YRLLP I + + I G+ A +
Sbjct: 188 DPDILIAKLRPNQEISLRVHCVLGIGADHAKFSPVSTASYRLLPTIDILEPITGDDAVKF 247
Query: 132 QTMFSPGVISIEKKPNAGV 150
Q F GVI I+ A V
Sbjct: 248 QKCFPSGVIGIDSNGAAYV 266
>gi|169603299|ref|XP_001795071.1| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
gi|160706369|gb|EAT88418.2| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
Length = 350
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSA-----SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
P + +T+ +L ++C+ + + D +Y H V+ KD+ W P+G Q D + S
Sbjct: 118 PSDYNTVIMKLDVECSWQEGGLQRAVQGETDPDKLYIGHNVYAKDLVWEPLGKQFDEFPS 177
Query: 66 SD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
+ + + DILI K+RPG +I ++M A+K IG+DHAKFSPVATA YRL+P I + + I
Sbjct: 178 GEEIRATNPDILIVKMRPGQKIQLSMHAIKGIGQDHAKFSPVATASYRLMPTIDILKPIV 237
Query: 125 GEMAQRLQTMFSPGVISIE 143
G A++ F GVI +E
Sbjct: 238 GADAKKFARCFPRGVIKLE 256
>gi|50285441|ref|XP_445149.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524452|emb|CAG58049.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ + +Y V+ +D+++ P SQ + + V P
Sbjct: 128 DKNTIVMTLNVKCTRNPDAPKDCTDPTILYNNAHVYARDLKFEPHSSQVETFADCPVVPC 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI ++ + G+DHAKFSPVATA YRLLP I + + I G+ A+R
Sbjct: 188 DPDILLAKLRPGQEISLSTHCILGEGKDHAKFSPVATASYRLLPHIEILEPITGDSAKRF 247
Query: 132 QTMFSPGVISIEKKPNAGVV 151
Q F GVI I + A V+
Sbjct: 248 QACFPKGVIGINENGEAYVL 267
>gi|353241596|emb|CCA73401.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Piriformospora indica DSM 11827]
Length = 382
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 12 CEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
+++T+ F L + C + ++ + +Y V+ KD+QWVP G Q ++ S
Sbjct: 134 TDRNTMVFSLDVTCADRDGVRPGTTDPEKLYINSSVYAKDLQWVPQGEQETIFASDPPRA 193
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE-------- 122
+ +ILIAKLRP I + M AVKSIGRDH KFSPV TAFYRL+P I L +
Sbjct: 194 ANPNILIAKLRPEQSIHLEMHAVKSIGRDHTKFSPVGTAFYRLMPHIQLLKPGDRYDEES 253
Query: 123 --------IEGEMAQRLQTMFSPGVISIEKK 145
+ E A+R Q FS GVI ++K+
Sbjct: 254 RKVDKLEMADQEQAKRFQDAFSEGVIEVKKE 284
>gi|403419367|emb|CCM06067.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
P +++TL F+L + C S S A + V + D++W+P G Q ++ P
Sbjct: 140 PTDRNTLVFRLNVACEVDKSASKEKGASRKFLHELVKSGDLEWIPQGEQAAVFAGCTPAP 199
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL--TQEIEGEMA 128
+ +I++AKLRPG EI++ + A+K++G+ HAK+SPVATA YRL P I L ++ + +
Sbjct: 200 TNKEIVLAKLRPGQEIEMELHAIKNVGKVHAKWSPVATASYRLHPLIVLNPSKPVPPHLG 259
Query: 129 QRLQTMFSPGVISIEK 144
++ FSPGV+ I++
Sbjct: 260 EKFAACFSPGVVQIDR 275
>gi|428166654|gb|EKX35626.1| hypothetical protein GUITHDRAFT_90183 [Guillardia theta CCMP2712]
Length = 375
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIG---RDHA 101
KVF+ ++W+PIG Q + +KSS P+HDDILI +LRPG E+D+ M K R HA
Sbjct: 172 KVFSSQLEWIPIGKQAETFKSSPPAPVHDDILITRLRPGQELDMEMHCHKGNNCGDRGHA 231
Query: 102 KFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
K+SPVATA+YRLLP+I L +E+ G++A L
Sbjct: 232 KWSPVATAWYRLLPRIDLVEEVTGDLADSL 261
>gi|406606450|emb|CCH42224.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 295
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Query: 13 EQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +T+ L + CTK+ + +S+ ++Y ++ +D+++ P G+Q + +K+ + P
Sbjct: 91 DANTVVMTLDVSCTKNPNAPKNSTDPKELYRNSSIYARDLKFEPQGNQLENFKNP-IEPA 149
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + V IG DHAKFSPV+TA YRLLP I + + I G+ A++
Sbjct: 150 DPDILLAKLRPGQEISLRIHCVLGIGSDHAKFSPVSTASYRLLPTIDIIEPIRGDDAKKF 209
Query: 132 QTMFSPGVISIEK 144
Q F GVI I
Sbjct: 210 QKCFPTGVIGINN 222
>gi|301095579|ref|XP_002896889.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262108536|gb|EEY66588.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 304
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHK-VFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ F+L + C F D H V+++D++WVP G+Q + + S + P+
Sbjct: 83 DENTIVFKLDVTC----KFDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERFGS--IRPV 136
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H+DIL+AKLRPG I + K +G+DHAKFSPVATA YRL+PK+ L +++EG A+RL
Sbjct: 137 HEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRL 196
Query: 132 QTMFSPGVISIE 143
G+ IE
Sbjct: 197 VEECHIGLFDIE 208
>gi|242819534|ref|XP_002487338.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713803|gb|EED13227.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
Length = 373
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKS- 65
EP + +T+ +L ++C S + A+D Y ++ +DI + P G Q + +
Sbjct: 143 EPSDFNTVVLRLNVEC--SVNEKAPPGAEDPRIRYHNAHIYARDITFHPQGRQTNYFTGD 200
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
++ P++ DILIAKLRPG I++ M VK IG DHAKFSPVATA YRLLP+I + + I G
Sbjct: 201 GEIQPVNPDILIAKLRPGQVIELEMHCVKGIGADHAKFSPVATATYRLLPEIRILRPIIG 260
Query: 126 EMAQRLQTMFSPGVISIEK 144
E A++ F GVI EK
Sbjct: 261 EDAKKFAKCFPKGVIGFEK 279
>gi|313236133|emb|CBY11457.1| unnamed protein product [Oikopleura dioica]
gi|313243610|emb|CBY42293.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 25/159 (15%)
Query: 6 RLKYEPCEQDTLQFQLK-------IKCTKSASFSHSSHADDMYEKHKVFTK--------- 49
RL P + D QF+ + I CTK+A + D + KV K
Sbjct: 114 RLGLIPIKADFRQFKSRTEKDMTSIDCTKAAHVKGAKEDDSLLFHFKVIGKHQKNSTNHV 173
Query: 50 ------DIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKF 103
+++W P+G+Q + + +V P DI IAK++P ID+ + A + IGRDHAKF
Sbjct: 174 QIVESSELKWSPVGNQKE---TMNVMPCFHDITIAKIKPKQFIDIELHAFRGIGRDHAKF 230
Query: 104 SPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISI 142
SPV TAFYRLLP I T+ I G+ A +++MFSPG + I
Sbjct: 231 SPVCTAFYRLLPTIEFTEPIRGDDAVEVKSMFSPGTVEI 269
>gi|146164033|ref|XP_001012875.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila]
gi|146145882|gb|EAR92630.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila SB210]
Length = 336
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 7/127 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHAD------DMY-EKHKVFTKDIQWVPIGSQGDMYKS 65
E+++L+F LKIKC+K + + S AD + Y E V++ D +WV G Q ++
Sbjct: 130 EKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLENAIVYSGDFKWVSQGEQNKKFEE 189
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
+ + +HD+I++AKLR EI + K IG+ HAK+SPV TA+YRL+P+I + +I G
Sbjct: 190 NPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKWSPVCTAYYRLMPEININSDITG 249
Query: 126 EMAQRLQ 132
AQ L+
Sbjct: 250 AKAQELK 256
>gi|121716353|ref|XP_001275782.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
gi|119403939|gb|EAW14356.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
Length = 374
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 6/137 (4%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
P + +T+ +L ++C ++ + + DD +Y+ V+ KDI + P+G Q +
Sbjct: 145 PADYNTIVLRLDVECAENPNAAPGE--DDPRKLYKNAHVYAKDITYHPVGRQEQFFTGDG 202
Query: 68 -VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ P++ DIL+AKLRPG +ID+ + +K IG DHAKFSPVATA YRL+P I + + I G+
Sbjct: 203 AIQPVNPDILVAKLRPGQKIDMELHCIKGIGADHAKFSPVATASYRLMPDIKILRPIIGD 262
Query: 127 MAQRLQTMFSPGVISIE 143
A++ F GVI +E
Sbjct: 263 DAKKFAKCFPKGVIELE 279
>gi|226287322|gb|EEH42835.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb18]
Length = 380
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E + +T+ L ++C K+ S +Y V+ KDI + P+G Q + D
Sbjct: 144 ELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKDITFQPVGRQEAYFPEPDG 203
Query: 69 G--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
G P + DIL+AKLRPG +ID+ M VK IG DHAKFSPVATA YRLLP I + + I G
Sbjct: 204 GIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGM 263
Query: 127 MAQRLQTMFSPGVISIE 143
A + F GVI IE
Sbjct: 264 DAVKFAGCFPEGVIGIE 280
>gi|295663793|ref|XP_002792449.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279119|gb|EEH34685.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 380
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E + +T+ L ++C K+ S + +Y V+ KDI + P+G Q + D
Sbjct: 144 ELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKDITFQPVGRQEAYFPEPDG 203
Query: 69 G--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
G P + DIL+AKLRPG +ID+ M VK IG DHAKFSPVATA YRLLP I + + I G
Sbjct: 204 GIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGM 263
Query: 127 MAQRLQTMFSPGVISIE 143
A + F GVI IE
Sbjct: 264 DAVKFAGCFPEGVIGIE 280
>gi|452836262|gb|EME38206.1| hypothetical protein DOTSEDRAFT_57363 [Dothistroma septosporum
NZE10]
Length = 393
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 41 YEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGR 98
Y V+ IQ+ P G + + S + + P++ DILIAKLRPG I+V M A+K IG
Sbjct: 205 YANSNVYAHQIQFEPQGDRQTGWFSGEEIIRPVNPDILIAKLRPGQRINVRMHAIKGIGA 264
Query: 99 DHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
DHAKFSPVATA YRLLP I +TQ I G+ A+ Q F GVI +E P +G
Sbjct: 265 DHAKFSPVATASYRLLPDIKITQPIVGKDAKTFQHCFPRGVIKLEDDPESG 315
>gi|406866169|gb|EKD19209.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 379
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 10/136 (7%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADD-----MYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
+T+ +L ++CTK+ H + + +Y ++ KDI++ P G+Q + D +
Sbjct: 153 NTILLELNVECTKN----HDAPKGEKDPLVLYHNAHIYAKDIKFKPFGNQHKYFSGEDAI 208
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
+ DILIAKLRPG I++ M A+K +G DHAKFSPVATA YRLLP I++ + I G+ A
Sbjct: 209 ETTNPDILIAKLRPGQCIELEMHAIKGVGSDHAKFSPVATASYRLLPTISILKPILGKDA 268
Query: 129 QRLQTMFSPGVISIEK 144
++ ++ F GVI I++
Sbjct: 269 EKFKSCFPEGVIGIDR 284
>gi|402224041|gb|EJU04104.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 5/134 (3%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHAD--DMYEKHKVFTKDIQWVPIGSQGDM--YKSS 66
P + +T+ F++++ CT S F D ++YE ++ ++W P+G+Q + + +
Sbjct: 128 PTDANTISFEVQVTCT-SRPFPPRGSTDPSELYENSSIYASHLRWKPVGAQAALPDWLAD 186
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DI++ KLRPG E+++ M VKS GRDHAK+SPVATA YRLLP I + + I +
Sbjct: 187 PPSVAKPDIVLVKLRPGQELNIEMHCVKSCGRDHAKYSPVATATYRLLPYIQILKPIPEQ 246
Query: 127 MAQRLQTMFSPGVI 140
+ + FSPGV+
Sbjct: 247 LQAKFMQSFSPGVM 260
>gi|302414524|ref|XP_003005094.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
gi|261356163|gb|EEY18591.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
Length = 375
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 15 DTLQFQLKIKCTKSASFSHSS-HADDMYEKHKVFTKDIQWVPIGSQGDMYKS--SDVGPI 71
+T+Q +L+I+CT++ + + + V DI++VP G Q + + + V P
Sbjct: 148 NTVQLRLRIECTRNPDAAPGEIDSTKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPT 207
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ DIL+AKLRPG +++ M K IG DHAKFSPVATA YRLLP IT+T+ I G A +
Sbjct: 208 NPDILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRLLPTITITRPILGADADKF 267
Query: 132 QTMFSPGVISIEK 144
F GVI IE+
Sbjct: 268 ARCFPAGVIGIER 280
>gi|385302721|gb|EIF46838.1| dna-directed rna polymerases i and iii 40 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 340
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D N K + +++T+ L + CT++ + + +++Y+ V+ KD+++ P G Q
Sbjct: 120 VDPNAEEKEKFTDENTIVLSLNVSCTRNPNAVKGDNRPENLYKNSNVYAKDLKFEPQGRQ 179
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ +K V P +IL+AKLRPG EI + V I DHAKFSPVAT YRLLP I +
Sbjct: 180 VETFKDHPVVPCDPNILLAKLRPGQEISLRAHCVLGIXADHAKFSPVATXSYRLLPLIDI 239
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
+ I G+ A Q F GVI I K A V
Sbjct: 240 KEPITGKDALEFQDCFPSGVIGINDKGEAYV 270
>gi|67523919|ref|XP_660019.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|40745370|gb|EAA64526.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|259487823|tpe|CBF86802.1| TPA: DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) [Aspergillus nidulans
FGSC A4]
Length = 373
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
Query: 15 DTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T+ +L ++CTK+ + S + +Y+ V+ KDI + P+G Q + + + ++
Sbjct: 149 NTVVLRLDVECTKNPNASRDETDPRKLYKNAHVYAKDIVFHPVGRQEEFFTGEGAIRAVN 208
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DIL+AKLRPG +I++ M +K IG DHAKFSPVATA YRL+P I + + I GE A++
Sbjct: 209 PDILVAKLRPGQKIELEMHCIKGIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKKFA 268
Query: 133 TMFSPGVISIE 143
F GVI +E
Sbjct: 269 KCFPKGVIGLE 279
>gi|365982085|ref|XP_003667876.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
gi|343766642|emb|CCD22633.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Length = 335
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASF-SHSSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D +L + + + +T+ L IKCT++ + + +Y V+ KD+++ P G Q
Sbjct: 116 IDTSLSEEEKFTDDNTVVMSLNIKCTRNLNAPKDCTDPKILYHNSSVYAKDLKFEPQGKQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ + V P DIL+AKLRP EI + + + +G DHAKFSPV+TA YRLLP I +
Sbjct: 176 VETFAKCPVVPSDPDILLAKLRPDQEISLRVHCILGVGGDHAKFSPVSTASYRLLPHINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
+ I GE A + Q F PGVI I ++ V
Sbjct: 236 LKPITGEQAIKFQKCFLPGVIGINEETGEAYV 267
>gi|400602680|gb|EJP70282.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 384
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
DT++ +L + CT +A + + Y V+ +DI + P+G Q + +D + P++
Sbjct: 160 DTVRLELNVTCTANADAAPGETDPTKAYHHAHVYARDIVFSPMGEQERYFSGADAIAPVN 219
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAK+RP I+++M K IG DHAKFSPVATA YRLLP I + + I G A++ Q
Sbjct: 220 PDILIAKMRPKQTINLSMHMHKGIGSDHAKFSPVATASYRLLPTIKILKPIVGVDAEKFQ 279
Query: 133 TMFSPGVISIEK 144
F GVI ++K
Sbjct: 280 GCFPQGVIGLQK 291
>gi|330921707|ref|XP_003299536.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
gi|311326761|gb|EFQ92375.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 11 PCEQDTLQFQLKIKCTK-----SASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
P +T+ +LK CT + + + + D +Y H V+ KDI++ P G Q +
Sbjct: 142 PTSCNTVALELKAMCTWQPGGLARAVAGETDPDKLYVGHNVYAKDIRFEPNGDQAQNFSQ 201
Query: 66 SD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
++ + + DILI K+RPG EI++ M A+K I +DHAKFSPVATA YRL+P I +T+
Sbjct: 202 AEGKHIRSTNPDILICKMRPGQEINLRMHAIKGISQDHAKFSPVATASYRLMPTIDITKP 261
Query: 123 IEGEMAQRLQTMFSPGVISIEKKPNAGV 150
I G A++ F GVI ++ +A +
Sbjct: 262 IVGADAKKFSRCFPSGVIRLDTVTSADI 289
>gi|384488271|gb|EIE80451.1| hypothetical protein RO3G_05156 [Rhizopus delemar RA 99-880]
Length = 247
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 82/125 (65%), Gaps = 10/125 (8%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDM-----YEKHKVFTKDIQWVPIGSQGDMYKS 65
P + +TL F+LK KC F+ + D+ Y V++KD+ W P G+Q + + +
Sbjct: 125 PTDLNTLVFRLKKKC----EFNPEASPDETDPHKKYINSYVYSKDLIWEPKGNQEEKFAA 180
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI-E 124
+ P+HDDI+IAKLRPG E+++ + K +GR+HAK+SPVATA YRLLP+IT+ + I +
Sbjct: 181 NPPRPVHDDIVIAKLRPGQEMEMELHCQKGVGREHAKWSPVATASYRLLPEITILEPITD 240
Query: 125 GEMAQ 129
G+ +Q
Sbjct: 241 GQGSQ 245
>gi|212530122|ref|XP_002145218.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
gi|210074616|gb|EEA28703.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
Length = 373
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDM-YEKHKVFTKDIQWVPIGSQGDMYKS-SD 67
EP + +T+ L I+CT + + Y V+ DI + P G Q + +
Sbjct: 143 EPSDFNTVVLNLNIECTVNEKAPPGEEDPRIRYHNAHVYASDITFDPKGRQEHYFSGEGE 202
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P++ DILIAKLRPG I++ M +K IG DHAKFSPVATA YRLLP+I + + I GE
Sbjct: 203 IKPVNPDILIAKLRPGQVIELEMHCIKGIGADHAKFSPVATATYRLLPEIRIMRPIIGED 262
Query: 128 AQRLQTMFSPGVISIEK 144
A++ F GVI EK
Sbjct: 263 ARKFAKCFPKGVIGFEK 279
>gi|358378075|gb|EHK15758.1| hypothetical protein TRIVIDRAFT_38208 [Trichoderma virens Gv29-8]
Length = 371
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 15 DTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T++ +L I CT + S + + Y V+ KDI +VP G Q + + + + P +
Sbjct: 146 NTVRLELNITCTVNPDASPNENDPLKAYNHAHVYAKDIVFVPTGRQVEYFSGENAIAPTN 205
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRP I++ M K IG DH+KFSPVATA YRLLP I +T+ I G A++ Q
Sbjct: 206 PDILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLPLIHITKPIIGADAEKFQ 265
Query: 133 TMFSPGVISIEK 144
F GVI +EK
Sbjct: 266 RCFPQGVIGLEK 277
>gi|384495741|gb|EIE86232.1| hypothetical protein RO3G_10943 [Rhizopus delemar RA 99-880]
Length = 247
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 77/118 (65%), Gaps = 9/118 (7%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDM-----YEKHKVFTKDIQWVPIGSQGDMYKS 65
P + +TL F+LK KC F+ + D+ Y V++KD+ W P G+Q + + +
Sbjct: 125 PTDLNTLVFRLKKKC----EFNPEASPDETDPHKKYINSYVYSKDLIWEPKGNQEEKFAN 180
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ P+HDDI+IAKLRPG E+++ + K +GR+HAK+SPVATA YRLLP+IT+ + I
Sbjct: 181 NPPRPVHDDIVIAKLRPGQEMEMELHCQKGVGREHAKWSPVATASYRLLPEITILEPI 238
>gi|225717016|gb|ACO14354.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 239
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 76/129 (58%), Gaps = 25/129 (19%)
Query: 10 EPCEQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DT+Q QLKIKCT++ + S+ ++Y H V++KDI
Sbjct: 132 EGTEIDTIQLQLKIKCTRNHQATKDSADPQELYLNHMVYSKDI----------------- 174
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
L+AKLRPG E+D+ M VK IG+DHAKFSPVATA YRLLP+ITL + +EG +
Sbjct: 175 -------LLAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKPVEGGES 227
Query: 129 QRLQTMFSP 137
+ +T+ P
Sbjct: 228 RASETLLLP 236
>gi|340501661|gb|EGR28416.1| polymerase i polypeptide 30kda, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 80/127 (62%), Gaps = 7/127 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHAD-------DMYEKHKVFTKDIQWVPIGSQGDMYKS 65
E ++++F +K+KC K ++++ S D E V++ +W PIG+Q + +K
Sbjct: 118 ENNSIKFSIKVKCQKKQTYNNHSQKDLENLDPEKYLENAIVYSGQFKWEPIGNQKERFKE 177
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
+ + +HD+I++AKLR EI + K +G++HAK+SPV TA+YRL+P I + + I+G
Sbjct: 178 NIIKIVHDNIIVAKLRENQEIIAEVICQKGMGKNHAKWSPVCTAYYRLMPSIKILEPIQG 237
Query: 126 EMAQRLQ 132
+ AQ+L+
Sbjct: 238 KKAQQLK 244
>gi|346324382|gb|EGX93979.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 380
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 4/133 (3%)
Query: 15 DTLQFQLKIKCT--KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPI 71
+T++ +L + CT K A+ + + H V+ +DI +VP+G Q + +D + P+
Sbjct: 156 NTVRLELNVTCTPNKDAAPGETDPTKAYHNAH-VYARDIVFVPMGEQETYFSGADAIAPV 214
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ DILIAK+RP I+++M K IG DHAKFSPVATA YRL+P I + + I G A++
Sbjct: 215 NPDILIAKMRPKQTINLSMHMHKGIGADHAKFSPVATASYRLMPVIKILRPIVGADAEKF 274
Query: 132 QTMFSPGVISIEK 144
Q F GVI ++K
Sbjct: 275 QACFPSGVIGLQK 287
>gi|449541898|gb|EMD32879.1| hypothetical protein CERSUDRAFT_160889 [Ceriporiopsis subvermispora
B]
Length = 364
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
P +++TL FQL + C + + S + +E V ++D++WVP G Q ++ P
Sbjct: 136 PTDRNTLVFQLNVTCERMKNAPRGSTSQHKHEY--VRSEDLEWVPQGEQEVVFADKPPAP 193
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL--TQEIEGEMA 128
+ +I++AKL PG EI+V + A+K +G++HAK++PVATA YRL P + L ++ I +A
Sbjct: 194 TNKEIVLAKLAPGQEINVELHAIKGVGKEHAKWNPVATASYRLHPLVLLNPSKPIPPHLA 253
Query: 129 QRLQTMFSPGVISIE 143
+ FSPGV+ +E
Sbjct: 254 DKFAKCFSPGVVRVE 268
>gi|261196646|ref|XP_002624726.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595971|gb|EEQ78552.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239609550|gb|EEQ86537.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327350214|gb|EGE79071.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 380
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E + +T+ L ++CTK+ S + +Y V+ KDI + P+G Q + Y
Sbjct: 144 ELSDSNTIVLHLSVECTKNPKASANEEDPQKLYNHAHVYAKDITFHPVGRQ-EAYFPEPY 202
Query: 69 GPIHD---DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
G I DIL+AKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I G
Sbjct: 203 GAIRSANPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIRILRPILG 262
Query: 126 EMAQRLQTMFSPGVISIE 143
+ A + F GVI I+
Sbjct: 263 QDALKFARCFPKGVIGID 280
>gi|322708977|gb|EFZ00554.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Query: 9 YEPC-EQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSS 66
Y C + +T++ +L + CT + + + + V+ KDI +VP G Q + +
Sbjct: 149 YAGCFDYNTVRLELNVTCTVNPDAAPDERDPLEAFNNAHVYAKDIVFVPTGKQVEFFSGE 208
Query: 67 D-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
D + P++ DILIAKLRP I+++M K IG DHAKFSPVATA YRL+P I + + I G
Sbjct: 209 DAIAPVNPDILIAKLRPRQTINLSMHMHKGIGADHAKFSPVATASYRLMPTIKILKPILG 268
Query: 126 EMAQRLQTMFSPGVISIEK 144
A++ F GVI +EK
Sbjct: 269 ADAEKFARCFPQGVIGLEK 287
>gi|240279628|gb|EER43133.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
gi|325092757|gb|EGC46067.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 380
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSS 66
E + +T+ L ++CT + S++ DD Y V+ KDI + P+G Q ++
Sbjct: 144 ELADYNTVVLHLNVECTNNPK--ASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEP 201
Query: 67 D--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
D + + DIL+AKLRPG +ID+ M VK IG DHAKFSPVATA YRLLP I + + I
Sbjct: 202 DGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPIL 261
Query: 125 GEMAQRLQTMFSPGVISIE 143
G A + F GVI I+
Sbjct: 262 GNDALKFARCFPKGVIGID 280
>gi|225562812|gb|EEH11091.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
capsulatus G186AR]
Length = 380
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSS 66
E + +T+ L ++CT + S++ DD Y V+ KDI + P+G Q ++
Sbjct: 144 ELADYNTVVLHLNVECTNNPK--ASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEP 201
Query: 67 D--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
D + + DIL+AKLRPG +ID+ M VK IG DHAKFSPVATA YRLLP I + + I
Sbjct: 202 DGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPIL 261
Query: 125 GEMAQRLQTMFSPGVISIE 143
G A + F GVI I+
Sbjct: 262 GNDALKFARCFPKGVIGID 280
>gi|154279942|ref|XP_001540784.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
gi|150412727|gb|EDN08114.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
Length = 380
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADD---MYEKHKVFTKDIQWVPIGSQGDMYKSS 66
E + +T+ L ++CT + S++ DD Y V+ KDI + P+G Q ++
Sbjct: 144 ELADYNTVVLHLNVECTNNPK--ASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEP 201
Query: 67 D--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
D + + DIL+AKLRPG +ID+ M VK IG DHAKFSPVATA YRLLP I + + I
Sbjct: 202 DGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPIL 261
Query: 125 GEMAQRLQTMFSPGVISIE 143
G A + F GVI I+
Sbjct: 262 GNDALKFARCFPKGVIGID 280
>gi|328851366|gb|EGG00521.1| hypothetical protein MELLADRAFT_111755 [Melampsora larici-populina
98AG31]
Length = 359
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+ +TL F+L +C+++ + S + +Y V + + W P G Q ++ S +
Sbjct: 144 DMNTLVFKLVARCSRNPNVSKTEKDPSILYTDSDVTSGYLDWQPKGDQPALFGSQPPKAV 203
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DDIL+ K+RPG EI + M VK IG+DHAKFSPVATA YRLLP I + + I ++
Sbjct: 204 QDDILLVKMRPGQEISIEMHCVKGIGKDHAKFSPVATASYRLLPHIIIHEPILEPHCEKF 263
Query: 132 QTMFSPGVISIEKK 145
+ F+ GVI I K
Sbjct: 264 TSCFAQGVIEIVKN 277
>gi|322693281|gb|EFY85147.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium acridum CQMa 102]
Length = 1842
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 9 YEPC-EQDTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSS 66
Y C + +T++ +L + CT + + + V+ KDI +VP G Q + +
Sbjct: 1610 YAGCFDWNTVRLELNVTCTVNPDAAPDERDPLKAFNNAHVYAKDIVFVPTGRQVEFFSGE 1669
Query: 67 D-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
D + P++ DILIAKLRP I+++M K IG DHAKFSPVATA YRL+P I + + I G
Sbjct: 1670 DAIAPVNPDILIAKLRPRQTINLSMHMHKGIGADHAKFSPVATASYRLMPTIKILKPILG 1729
Query: 126 EMAQRLQTMFSPGVISIEK 144
A++ F GVI +EK
Sbjct: 1730 ADAEKFARCFPQGVIGLEK 1748
>gi|358055076|dbj|GAA98845.1| hypothetical protein E5Q_05533 [Mixia osmundae IAM 14324]
Length = 368
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 11 PCEQDTLQFQLKIKCT-KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P + +T+ F L KC + D++Y VF+ ++W P G+Q M+ +
Sbjct: 144 PTDLNTVVFSLLAKCEHRPGHDPDEKDPDELYIDSNVFSGKLEWKPQGAQESMFDTDATR 203
Query: 70 P--IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
P + DDIL+AKLRPG I V + K G+ HAK+SPVATA YRL+P I + + I +
Sbjct: 204 PRPVQDDILLAKLRPGQTISVELHCNKGNGKTHAKWSPVATASYRLMPHIRILKPIPEHL 263
Query: 128 AQRLQTMFSPGVISIEK 144
++ ++ F PGVI I++
Sbjct: 264 CEKFKSCFQPGVIGIKR 280
>gi|389624551|ref|XP_003709929.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|351649458|gb|EHA57317.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|440471601|gb|ELQ40590.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae Y34]
gi|440481959|gb|ELQ62489.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae P131]
Length = 373
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 4/132 (3%)
Query: 15 DTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPI 71
+T+ +L +KCT++ + + Y K V+ DI++VP G Q D Y S D + P+
Sbjct: 148 NTVNLRLNVKCTRNPDAKPGENDPNKAYIKPNVYASDIEFVPAGQQTD-YFSGDGAIVPV 206
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ DILIAKLRPG ID+ M A G DHAKFSPV TA YRL+P I + + I G A++
Sbjct: 207 NPDILIAKLRPGQGIDLEMHAHIGYGWDHAKFSPVCTASYRLMPIIDIVKPIVGADAEKF 266
Query: 132 QTMFSPGVISIE 143
+ F GVI ++
Sbjct: 267 RDCFPDGVIRLQ 278
>gi|325187132|emb|CCA21673.1| DNAdirected RNA polymerase I and III subunit RPAC1 p [Albugo
laibachii Nc14]
Length = 343
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 19/124 (15%)
Query: 15 DTLQFQLKIKC-------TKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
+T+ F+L + C S+ SHSS V+++D++WVP G+Q + + S
Sbjct: 129 NTIVFKLDVTCRSDPNEPENSSKASHSS----------VYSRDLEWVPQGNQEERFTS-- 176
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
+ P+ +DILIAKLRPG I + K IGRDHAKFSPV+TA YRLLP+I T+ + GE
Sbjct: 177 IRPVSEDILIAKLRPGQSIALEAHCRKGIGRDHAKFSPVSTASYRLLPRIEFTEPVVGEE 236
Query: 128 AQRL 131
A L
Sbjct: 237 ALEL 240
>gi|339238573|ref|XP_003380841.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
gi|316976212|gb|EFV59540.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
Length = 277
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 11/145 (7%)
Query: 6 RLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
R EP +DTL F+LK+K S+ D++ E +V + ++W PI Q + +K+
Sbjct: 111 RTDDEPKAEDTLIFELKVK----------SNVDEI-ENERVCSSALEWKPIDGQEEKFKN 159
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
+H DIL+A L+ G EI+ K IGRDHAKFSPVATA YR LP++ ++
Sbjct: 160 CPPKVVHPDILLAILKSGQEIECVCHCTKGIGRDHAKFSPVATASYRFLPELKFLRDFYD 219
Query: 126 EMAQRLQTMFSPGVISIEKKPNAGV 150
E A+ +Q++FS V+ + K + V
Sbjct: 220 EEAKLVQSVFSKDVVCLIKCEDVNV 244
>gi|291000877|ref|XP_002683005.1| predicted protein [Naegleria gruberi]
gi|284096634|gb|EFC50261.1| predicted protein [Naegleria gruberi]
Length = 398
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPI 71
+ + + F+L + C K+ + + Y+ KV++ D++WVPIG+Q + + + P+
Sbjct: 146 DNEYILFELNVTCEKTLVPNPHNQNKLEYKHSKVYSGDLKWVPIGNQSTHFNGENAIRPV 205
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE--IEGEMAQ 129
+DDIL+AKL PG I V + VK IGR HAK+ PVATA YRL+P++ E E + A+
Sbjct: 206 YDDILLAKLNPGQSIHVQCYCVKGIGRSHAKWQPVATATYRLMPEVVFKGEPVTELKQAK 265
Query: 130 RLQTMFSPGVISIEKKP 146
L V IE P
Sbjct: 266 ELVEKCPMNVFDIEDSP 282
>gi|443923219|gb|ELU42493.1| ribonuclease H [Rhizoctonia solani AG-1 IA]
Length = 1023
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P +++TL F+L + C+++ + +Y+ V + ++W +G Q + + ++
Sbjct: 805 PTDRNTLVFKLSVTCSRNPGVPKDETDPAVLYKNANVLSGHMEWNGVGEQVNDFGNNPPR 864
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P + IL+AKLRPG E+++ + VK +G+DHAKFSPVATA YRL+P + Q I +
Sbjct: 865 PHNPKILLAKLRPGQELEMELHCVKGVGQDHAKFSPVATASYRLMPHVIFRQPIPPHLCD 924
Query: 130 RLQTMFSPGVISIEKKPNA 148
+ + F GV ++E+ N
Sbjct: 925 KFVSCFPSGVFAVEQGANG 943
>gi|358391580|gb|EHK40984.1| hypothetical protein TRIATDRAFT_28889 [Trichoderma atroviride IMI
206040]
Length = 377
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHAD-DMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGPIH 72
+T++ +L + CT + + + + Y V+ +DI + P G Q + + + + P++
Sbjct: 152 NTVRLELNVTCTVNQDAAPTENDPLKAYHHAHVYARDIVFAPTGRQAEYFSGENAIRPVN 211
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DILIAKLRP I++ M K IG DH+KFSPVATA YRLLP I +T+ I G A++ Q
Sbjct: 212 PDILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLPLIHITRPILGADAEKFQ 271
Query: 133 TMFSPGVISIE 143
F GVI +E
Sbjct: 272 KCFPEGVIGLE 282
>gi|392560708|gb|EIW53890.1| insert subdomain of RNA polymerase alpha subunit [Trametes
versicolor FP-101664 SS1]
Length = 366
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 10/134 (7%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
P +++TL FQL I+C++ A + V + D++WVP G Q ++
Sbjct: 137 PYDRNTLVFQLDIECSRGAKGA--------IINEYVTSGDLKWVPQGEQESVFGDLVPTA 188
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL--TQEIEGEMA 128
+ DI+IAKLRPG I+V + A+K +G++HAK+SPVATA YRL P + L ++ I +A
Sbjct: 189 TNKDIVIAKLRPGQVINVELHAIKGVGKEHAKWSPVATATYRLHPLVLLNPSKPIPPHLA 248
Query: 129 QRLQTMFSPGVISI 142
Q+ + FSPGV+ +
Sbjct: 249 QKFASCFSPGVVKV 262
>gi|326475646|gb|EGD99655.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
gi|326485520|gb|EGE09530.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Trichophyton
equinum CBS 127.97]
Length = 380
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
+ +T+ +L +CTK+ + + +Y ++ KD+ + P G Q + V P
Sbjct: 147 DSNTIVLRLVKECTKNRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQP 206
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
+ DIL+AKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I G A +
Sbjct: 207 CNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAVK 266
Query: 131 LQTMFSPGVISIEK 144
+ F GVI IE
Sbjct: 267 FASCFPRGVIGIEN 280
>gi|395324899|gb|EJF57331.1| insert subdomain of RNA polymerase alpha subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 370
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 85/144 (59%), Gaps = 10/144 (6%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
P +++TL F+L + C ++ S S + ++ V + D+ W P G Q ++ S
Sbjct: 137 PMDRNTLVFKLNVTCERAKKGSSSPYINEY-----VKSGDLVWEPQGEQATVFASRPPAA 191
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL--TQEIEGEMA 128
+ DI++AKLRPG I++ + A+K +G++HAK+SPVATA YRL P + L ++ + E A
Sbjct: 192 TNPDIVLAKLRPGQVIEMELHAIKGVGKEHAKWSPVATATYRLHPLVLLNPSKPVPPEHA 251
Query: 129 QRLQTMFSPGVISIEKKPNAGVVA 152
Q+ FSPGV+ + AG VA
Sbjct: 252 QKFAKCFSPGVVEVSA---AGEVA 272
>gi|330840939|ref|XP_003292464.1| RNA polymerase III subunit [Dictyostelium purpureum]
gi|325077271|gb|EGC30994.1| RNA polymerase III subunit [Dictyostelium purpureum]
Length = 338
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPI 71
+DTL F+LK+KC + A + +D V +K ++WVP Q M+ + + P+
Sbjct: 150 EDTLIFKLKVKCERDA---NGKIINDT-----VLSKHLEWVPHDDQIAMFPNEEDHPRPV 201
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DDI I +LRPG IDV ++ K+IGR+H K+SPV TA YRLLP I++ + I+GE A++L
Sbjct: 202 EDDIPIMRLRPGQVIDVQLYCEKNIGREHIKWSPVCTASYRLLPVISVDESIQGESAEKL 261
Query: 132 QTMFSPGVISIE 143
V IE
Sbjct: 262 VNTCPKKVFDIE 273
>gi|302655859|ref|XP_003019711.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
gi|291183453|gb|EFE39066.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
+ +T+ +L +CTK+ + + +Y ++ KD+ + P G Q + V P
Sbjct: 155 DSNTIVLRLVKECTKNRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQP 214
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
+ DIL+AKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I G A +
Sbjct: 215 CNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK 274
Query: 131 LQTMFSPGVISIEK 144
+ F GVI IE
Sbjct: 275 FASCFPRGVIGIEN 288
>gi|327297236|ref|XP_003233312.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464618|gb|EGD90071.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 380
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
+ +T+ +L +CTK+ + + +Y ++ KD+ + P G Q + V P
Sbjct: 147 DSNTIVLRLVKECTKNRNAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQP 206
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
+ DIL+AKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I G A +
Sbjct: 207 CNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK 266
Query: 131 LQTMFSPGVISIEK 144
+ F GVI IE
Sbjct: 267 FASCFPRGVIGIEN 280
>gi|281209634|gb|EFA83802.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 358
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMY--KSSDVGPI 71
+DTL F LK++C K A+ + V +K + WVP Q +M+ ++ P
Sbjct: 159 EDTLIFTLKVRCYKDANGETINGT--------VLSKHLTWVPTDDQNEMFPNEADHPRPA 210
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+DDI I KLRPG ++V + K+IGR+H K+SPV TAFY++LP+I+++ ++ GE A++L
Sbjct: 211 YDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTAFYKILPEISVSDKVTGEKAKKL 270
Query: 132 QTMFSPGVISIE 143
+ V IE
Sbjct: 271 KQSCPMNVYDIE 282
>gi|397620460|gb|EJK65733.1| hypothetical protein THAOC_13380 [Thalassiosira oceanica]
Length = 1014
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 11/113 (9%)
Query: 41 YEKHKVFTKDIQWVPIGSQGDMY----------KSSDVGPIHDDILIAKLRPGHEIDVTM 90
+ KH ++T+D+ W P G Q + + P+H+DIL+AKLRPG I++
Sbjct: 817 FTKH-IYTRDLLWAPQGDQLSRFPLHSSGVGSGVGGGIRPLHEDILLAKLRPGQVIELEA 875
Query: 91 FAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
A K +G+DHAKFSPVATA YRL+P+I + + + ++A+ L F PGV +E
Sbjct: 876 HARKGVGKDHAKFSPVATASYRLMPRIEVVKPVYDDLAEELVNWFEPGVFKLE 928
>gi|50553838|ref|XP_504330.1| YALI0E23947p [Yarrowia lipolytica]
gi|49650199|emb|CAG79929.1| YALI0E23947p [Yarrowia lipolytica CLIB122]
Length = 339
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI- 71
+ +T +L + C + A D + ++ +DI + P+G+Q K + +
Sbjct: 136 DSNTFVLRLNVTCERLA--------DGTMKNAHIYARDITFDPMGNQCQWVKDEGLENVF 187
Query: 72 ---HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
+ DILIAKLRP I++TMF G DHAKFSPVATA YRL+P IT+T +I G+ A
Sbjct: 188 KVANPDILIAKLRPNQSINLTMFCHLGFGHDHAKFSPVATASYRLMPTITITGDITGDEA 247
Query: 129 QRLQTMFSPGVISIE 143
++ Q F GVI +E
Sbjct: 248 KKFQKCFPKGVIELE 262
>gi|294894048|ref|XP_002774720.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239880227|gb|EER06536.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 310
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 42 EKHKVFTKDIQWVPIGS-QGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDH 100
E V++ D++WVP+ + Q + YK P++DD+LI KLR G E+++ F K IG+ H
Sbjct: 110 ESMPVYSGDLKWVPLNAEQEERYKDDPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIH 169
Query: 101 AKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
AK+SPV TA YRL+P I L + IEG A++ +++ GV IE
Sbjct: 170 AKWSPVCTATYRLMPDIILKEPIEGAEAKKFKSVCPMGVFDIE 212
>gi|50307479|ref|XP_453719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642853|emb|CAH00815.1| KLLA0D14861p [Kluyveromyces lactis]
Length = 334
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 1/139 (0%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
+++T+ L +KCT++ +Y ++ +D+++ P G Q + + V
Sbjct: 128 DENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAKCPVVAA 187
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP I +TQ I G+ A++
Sbjct: 188 DPDILLAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITGDDAKKF 247
Query: 132 QTMFSPGVISIEKKPNAGV 150
F GV + +K A +
Sbjct: 248 VKCFPKGVADVNEKGEAYI 266
>gi|302511159|ref|XP_003017531.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
gi|291181102|gb|EFE36886.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
Length = 362
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
+ +T+ +L +CTK+ S +Y ++ KD+ + P G Q + V P
Sbjct: 129 DSNTIVLRLVKECTKNRNSAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQP 188
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
+ D L+AKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I G A +
Sbjct: 189 CNPDTLLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK 248
Query: 131 LQTMFSPGVISIEK 144
+ F GVI IE
Sbjct: 249 FASCFPRGVIGIEN 262
>gi|407038499|gb|EKE39159.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 259
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
+P E+DT+ F L + CT ++ + ++ KV++ D+ W P G Q + +
Sbjct: 88 DPTEEDTIVFTLDVTCTLDSAKNPVNN--------KVYSSDLIWEPQGEQETTFADCPIK 139
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P+ DDILIA+L+P I +F K IG+DHAKFSPV A YRL+PKIT+ ++ +M++
Sbjct: 140 PVFDDILIAELQPHQHIKCKLFCCKGIGQDHAKFSPVCPATYRLMPKITIMKQ-SKKMSK 198
Query: 130 RLQTMFSPGVISIE 143
++ V IE
Sbjct: 199 EIKNCCPLNVFDIE 212
>gi|449705384|gb|EMD45440.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative,
partial [Entamoeba histolytica KU27]
Length = 249
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
+P E+DT+ F L + CT ++ + ++ KV++ D+ W P G Q + +
Sbjct: 88 DPTEEDTIVFTLDVTCTLDSAKNPVNN--------KVYSSDLIWEPQGEQETTFADCPIK 139
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P+ DDILIA+L+P I +F K IG+DHAKFSPV A YRL+PKIT+ ++ +M++
Sbjct: 140 PVFDDILIAELQPHQHIKCKLFCCKGIGQDHAKFSPVCPATYRLMPKITIMKQ-SKKMSK 198
Query: 130 RLQTMFSPGVISIE 143
++ V IE
Sbjct: 199 EIKNCCPLNVFDIE 212
>gi|167387776|ref|XP_001738304.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Entamoeba
dispar SAW760]
gi|165898594|gb|EDR25427.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Entamoeba dispar SAW760]
Length = 291
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
+P E+DT+ F L + CT ++ + ++ KV++ D+ W P G Q + +
Sbjct: 88 DPTEEDTIVFTLDVTCTLDSAKNPVNN--------KVYSSDLIWEPQGEQETTFADCPIK 139
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P+ DDILIA+L+P I +F K IG+DHAKFSPV A YRL+PKIT+ ++ +M++
Sbjct: 140 PVFDDILIAELQPHQHIKCKLFCCKGIGQDHAKFSPVCPATYRLMPKITVIKQ-NKKMSK 198
Query: 130 RLQTMFSPGVISIE 143
++ V IE
Sbjct: 199 EIKNCCPLNVFDIE 212
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADD------MYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
++ L + L + T S+ SH+ D + + V++ D++W+P+ Q D + ++
Sbjct: 130 KEHLVYDLCVGFTHSSKDSHNKPEKDKDDTLPVAQYLPVYSSDLKWIPLAGQEDHFNINN 189
Query: 68 VG-PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
P+ ILI KL G EI+ AVK IGRDHAKFSPVA A+Y+ P I L + IEGE
Sbjct: 190 PPIPVSSTILINKLALGDEIEARCVAVKGIGRDHAKFSPVAAAYYKFHPIIKLLRTIEGE 249
Query: 127 MAQRLQTMFSPGVISIEKKPNAGVV 151
A +LQ F+ GVI I K V
Sbjct: 250 QAIKLQKSFASGVIGINSKTGQAFV 274
>gi|294891094|ref|XP_002773417.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239878570|gb|EER05233.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 365
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 42 EKHKVFTKDIQWVPIGS-QGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDH 100
E V++ D++WVP+ + Q + YK P++DD+LI KLR G E+++ F K IG+ H
Sbjct: 165 ESMPVYSGDLKWVPLNAEQEERYKDDPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIH 224
Query: 101 AKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
AK+SPV TA YRL+P I L + IEG A++ + + GV IE
Sbjct: 225 AKWSPVCTATYRLMPDIILKEPIEGAEAKKFKLVCPMGVFDIE 267
>gi|145518624|ref|XP_001445184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412628|emb|CAK77787.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 72/122 (59%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
E +++ F L KC K + H + Y V + + W P G Q ++ ++ + P+H
Sbjct: 115 ELNSIDFTLVAKCEKKPNSKHDDPIEQQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVH 174
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
+I+IAKLR E+++ + K +G+ HAK+SPV TAFY+L+P IT+ +++ + ++L
Sbjct: 175 SNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLA 234
Query: 133 TM 134
++
Sbjct: 235 SL 236
>gi|298708063|emb|CBJ30416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 84/147 (57%), Gaps = 7/147 (4%)
Query: 10 EPCEQDTLQFQLKIKCTKSASF------SHSSHADDMYEKHKVFTKDIQWVPIGSQGDMY 63
EP E +T F+L++K + + +S+A VF+ ++W P G Q + +
Sbjct: 131 EPTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERF 190
Query: 64 KS-SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
+ + P+HDDILIAKLRPG EI M K IG+DHAKFSPVATA YRLLP +TL +E
Sbjct: 191 EGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEE 250
Query: 123 IEGEMAQRLQTMFSPGVISIEKKPNAG 149
+EG+ A+ L V IE AG
Sbjct: 251 VEGQEAEELVAKCPLNVFDIEDLGGAG 277
>gi|224009616|ref|XP_002293766.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220970438|gb|EED88775.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
Length = 351
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDM----YEKHKVFTKDIQWVPIGSQGDMY---- 63
+++T+ F+L + +S + D + KH ++T+D+ W P GSQ +
Sbjct: 134 TDRNTIVFRLNEATSLHSSSNQQKTVIDSPHRPFTKH-IYTRDLLWAPQGSQLTNFPLHS 192
Query: 64 ------KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
+ PI +DIL+AKLRPG I++ A K +G+DHAKFSPVATA YRL+P I
Sbjct: 193 TGVGSGVGGGIRPISEDILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPHI 252
Query: 118 TLTQEIEGEMAQRLQTMFSPGVISI 142
+ + I E+A+ L F PGV +
Sbjct: 253 EIVKPIYDELAEELVNWFEPGVFKL 277
>gi|401400700|ref|XP_003880837.1| rna polymerase II, related [Neospora caninum Liverpool]
gi|325115249|emb|CBZ50804.1| rna polymerase II, related [Neospora caninum Liverpool]
Length = 346
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
+++ L+ L +KCT+ + H + V+ +DI+W P+ SQ + + ++ +
Sbjct: 143 DENALRVSLHVKCTEQSLGPHQTSL-------PVYARDIKWEPMSPSQKEAFAANPPRAV 195
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H DILI KLRPG EI++ + K +G+ HAK+SPV TA YRL P+I + I+GE A L
Sbjct: 196 HPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTAVYRLEPEIVFKEPIQGEEASDL 255
Query: 132 QTMFSPGVISIE 143
++ GV +E
Sbjct: 256 CSLCPMGVFDVE 267
>gi|315044489|ref|XP_003171620.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
gi|311343963|gb|EFR03166.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
Length = 380
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD-MYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGP 70
+ +T+ +L +CTK+ S +Y ++ KD+ + P G Q + +
Sbjct: 147 DSNTIVLRLVKECTKNRSAPPGEEDPTILYNNAHIYAKDLVFEPQGRQEKYFHGDGAIQS 206
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
+ DIL+AKLRPG +ID+ M +K IG DHAKFSPVATA YRLLP I + + I G A +
Sbjct: 207 CNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK 266
Query: 131 LQTMFSPGVISIEK 144
+ F GV+++E
Sbjct: 267 FASCFPRGVVAVEN 280
>gi|164661059|ref|XP_001731652.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
gi|159105553|gb|EDP44438.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
Length = 213
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E +Q+T+ F LK C K+ + D E V++ ++W P G Q + S
Sbjct: 4 EANDQNTVVFNLKADCWKNGN-----SKDATVEGRYVYSSQLEWDPKGDQAETMADSPPR 58
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P++ DI+IAKL PG +++ + K IG+DHAKFSPVATA YRLLP I + + I +
Sbjct: 59 PVNQDIVIAKLAPGQGMEMELHCEKGIGKDHAKFSPVATATYRLLPLIEILKPIPEPLIP 118
Query: 130 RLQTMFSPGVI 140
+ + F GVI
Sbjct: 119 KFISCFPEGVI 129
>gi|398398399|ref|XP_003852657.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
gi|339472538|gb|EGP87633.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
Length = 474
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 11 PCEQDTLQFQLKIKCT-----------KSASFSHSSHADDMYEKHKVFTKDIQWVPIGS- 58
P + +T+ +L ++C K + S+ + Y V+ ++P G+
Sbjct: 164 PSDYNTIVMELNVECRWATQEEDGRDGKQLAKDGSTDPKEKYVNSSVYAHQFTFIPQGNH 223
Query: 59 QGDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
Q +++ + + P++ DILIAKLRPG I + + +K IG DHAKFSPVATA YRLLP+I
Sbjct: 224 QPTLFEGENAIRPVNPDILIAKLRPGQRIHLRVHCIKGIGADHAKFSPVATASYRLLPQI 283
Query: 118 TLTQEIEGEMAQRLQTMFSPGVISIE 143
+ I G+ A+ Q F GVI IE
Sbjct: 284 DIKSPITGQSAKAFQKCFPRGVIGIE 309
>gi|300175011|emb|CBK20322.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
++++L+F L++ C + +++ ++ E V+++ ++ +G Q D+ + +G +H
Sbjct: 127 DKNSLKFNLRVTCPSLSELQKAANNRNV-EYLTVYSQSLELEKLGRQLDLPEGQ-IGLVH 184
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDI++ KL PG ID+ +A K +G DHAK+SPV TA YR+ P I + + GE A+R++
Sbjct: 185 DDIILTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRPSIRFPKPLVGEDAERMK 244
Query: 133 TMFSPGVISIE 143
+ GV IE
Sbjct: 245 QICPMGVFDIE 255
>gi|297840495|ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
Length = 385
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 36/158 (22%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ-----GDM-- 62
+P E++T+ F+L +KC K + KV T +++W+P GS+ G +
Sbjct: 162 QPNEKNTIVFKLHVKCPKGDP------------RRKVLTSELKWLPNGSELVKESGGLTT 209
Query: 63 -----------------YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
+ + + P DILIAKL PG EI++ AVK IG+ HAK+SP
Sbjct: 210 KPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQEIELEAHAVKGIGKTHAKWSP 269
Query: 106 VATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
VATA+YR+LP++ L +E EG+ A+ L + V IE
Sbjct: 270 VATAWYRMLPEVILLKEFEGKHAEELVKVCPKKVFDIE 307
>gi|145517526|ref|XP_001444646.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412068|emb|CAK77249.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 74/131 (56%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
E +++ F L KC K + + Y V + + W P G Q ++ ++ + P+H
Sbjct: 115 ELNSIDFTLYAKCEKKPNSKQDDPIEQQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVH 174
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
+I+IAKLR E+++ + K +G+ HAK+SPV TAFY+L+P IT+ +++ + ++L
Sbjct: 175 SNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLA 234
Query: 133 TMFSPGVISIE 143
++ V I+
Sbjct: 235 SICPMKVFGIK 245
>gi|237839019|ref|XP_002368807.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|211966471|gb|EEB01667.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|221502105|gb|EEE27849.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 346
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
+++ L+ L +KCT+ + H + V+ K I+W P+ SQ + + ++ +
Sbjct: 143 DENALRVSLHVKCTEQSLGPHQTSL-------PVYAKHIKWEPMSPSQKEAFAANPPRAV 195
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
H DILI KLRPG EI++ + K +G+ HAK+SPV TA YRL P+I + I+GE A L
Sbjct: 196 HPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTAVYRLEPEIVFKESIQGEDASDL 255
Query: 132 QTMFSPGVISIE 143
++ GV IE
Sbjct: 256 CSLCPMGVFDIE 267
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 8 KYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKH-------KVFTKDIQWVPIGSQG 60
++ P E F++ K + S SS + + + + V++ +++WVP+ Q
Sbjct: 124 EFNPMEHVIFDFKVSFKKSDLKGCSESSGKEFISDLNLPSVRSSAVYSSELKWVPLPGQE 183
Query: 61 DMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
+++ + ILI KL G EI+ AVK +GRDHAKFSPVA A+Y+ LP I L
Sbjct: 184 ELFGEDQPTVVSPHILINKLAVGDEIEARCVAVKGVGRDHAKFSPVAAAYYKFLPVIKLL 243
Query: 121 QEIEGEMAQRLQTMFSPGVISIEKK 145
+ IEG+ A+ LQ F+ GVI I+ K
Sbjct: 244 RPIEGDEARLLQRSFAHGVIGIDPK 268
>gi|15219773|ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 36/158 (22%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ------GDM- 62
+P E++T+ F+L +KC K + KV T +++W+P GS+ G
Sbjct: 162 QPNEKNTIVFKLHVKCLKGDP------------RRKVLTSELKWLPNGSELIKESGGSTT 209
Query: 63 -----------------YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
+ + + P DILIAKL PG EI++ AVK IG+ HAK+SP
Sbjct: 210 TPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGIGKTHAKWSP 269
Query: 106 VATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
VATA+YR+LP++ L +E EG+ A+ L + V IE
Sbjct: 270 VATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIE 307
>gi|300120859|emb|CBK21101.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
++++L+F L++ C + +++ ++ E V+++ ++ +G Q D+ + +G +H
Sbjct: 127 DKNSLKFNLRVTCPSLSELQKAANNRNV-EYLTVYSQSLELEKLGRQLDLPEGQ-IGLVH 184
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
DDI++ KL PG ID+ +A K +G DHAK+SPV TA YR+ P I + + GE A+R++
Sbjct: 185 DDIILTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRPSIRFPKPLVGEDAERMK 244
Query: 133 TMFSPGVISIE 143
GV IE
Sbjct: 245 QTCPMGVFDIE 255
>gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|30696474|ref|NP_849833.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1|AC079675_3 RNA polymerase subunit; 10595-12672 [Arabidopsis thaliana]
gi|110741863|dbj|BAE98873.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|332195618|gb|AEE33739.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195619|gb|AEE33740.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 36/155 (23%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-------------- 58
E++T+ F+L +KC K+ + KV T D++W+P GS
Sbjct: 158 EKNTIVFKLHVKCPKNRP------------RLKVLTSDLKWLPNGSELLRESENKTSKPK 205
Query: 59 --------QGDM--YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
Q + + ++ + P DILIAKL PG EI++ AVK IG+ HAK+SPV T
Sbjct: 206 TYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGT 265
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
A+YR+ P++ L E+E E+A+RL + V IE
Sbjct: 266 AWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIE 300
>gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 36/155 (23%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-------------- 58
E++T+ F+L +KC K+ + KV T D++W+P GS
Sbjct: 158 EKNTIVFKLHVKCPKNRP------------RLKVLTSDLKWLPNGSELLRESENKTSKLK 205
Query: 59 --------QGDM--YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
Q + + ++ + P DILIAKL PG EI++ AVK IG+ HAK+SPV T
Sbjct: 206 TYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGT 265
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
A+YR+ P++ L E+E E+A+RL + V IE
Sbjct: 266 AWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIE 300
>gi|297837401|ref|XP_002886582.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
gi|297332423|gb|EFH62841.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
Length = 376
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 36/155 (23%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ------GDMYK-- 64
E++T+ F+L +KC K+ + KV T D++W+P GS+ G K
Sbjct: 158 EKNTIVFKLHVKCPKNRP------------RLKVLTSDLKWLPNGSEFLRESGGSTSKPK 205
Query: 65 ----------------SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
++ + P DILIAKL PG EI++ AVK IG+ HAK+SPV T
Sbjct: 206 TYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGT 265
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
A+YR+ P++ L E+E E+A+RL + V IE
Sbjct: 266 AWYRMHPEVVLRGEVEDELAERLVKVCPQNVFDIE 300
>gi|296811216|ref|XP_002845946.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
gi|238843334|gb|EEQ32996.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
Length = 380
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD--MYEKHKVFTKDIQWVPIGSQGDMYKSSDV-G 69
+ +T+ +L +C + + +H S D +Y ++ KD+ + P G Q + V
Sbjct: 147 DSNTIVLRLVKECKLNPN-AHPSEEDPTVLYNNAHIYAKDLIFEPQGRQEKYFHGDGVIQ 205
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
+ DIL+AKLRPG +ID+ M +K IG DHAK+SPVATA YRLLP I + + I G+ A
Sbjct: 206 SANPDILLAKLRPGQKIDIEMHCIKGIGADHAKYSPVATASYRLLPDIQILRPILGKDAI 265
Query: 130 RLQTMFSPGVISIE 143
+ F GVI IE
Sbjct: 266 KFAGCFPRGVIGIE 279
>gi|66812176|ref|XP_640267.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74855077|sp|Q54SN4.1|RPAC1_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpac1;
Short=RNA polymerases I and III subunit AC1
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 345
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPI 71
+DTL FQLK+KC K S + + KH + WVP Q +M+ + + P+
Sbjct: 144 EDTLIFQLKVKCEKD-SVTGKIINETALSKHLI------WVPTQDQEEMFPNEEDRPRPM 196
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DDI I KLRPG ID+ + K+IGR+H K+SPV TA YRL P I++ + I+G+ A +L
Sbjct: 197 EDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQPVISVDKSIKGDKANQL 256
Query: 132 QTMFSPGVISIE 143
V IE
Sbjct: 257 LEKCPKKVFDIE 268
>gi|514322|gb|AAB00528.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 36/155 (23%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-------------- 58
E++ + F+L +KC K+ + KV T D++W+P GS
Sbjct: 158 EKNNIVFKLHVKCPKNRP------------RLKVLTSDLKWLPNGSELLRESENKTSKPK 205
Query: 59 --------QGDM--YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
Q + + ++ + P DILIAKL PG EI++ AVK IG+ HAK+SPV T
Sbjct: 206 TYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGT 265
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
A+YR+ P++ L E+E E+A+RL + V IE
Sbjct: 266 AWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIE 300
>gi|225461965|ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera]
gi|296089944|emb|CBI39763.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 40/161 (24%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM-------- 62
P E++T+ F L ++C + + V + +++W+P GS+ +
Sbjct: 147 PNEKNTIVFNLHVRCERGGP------------RLTVKSNELKWLPHGSEFPLATENTTSS 194
Query: 63 --------------------YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
+ +GP H DI+IAKL PG EI++ AVK +G+ HAK
Sbjct: 195 STSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKGMGKTHAK 254
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
+SPVATA+YR+LP++ L QEIE E A+ L V IE
Sbjct: 255 WSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIE 295
>gi|452979634|gb|EME79396.1| hypothetical protein MYCFIDRAFT_216428 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQG 60
M N+ +++ E+D + K + S+ + Y V+ + + P G
Sbjct: 171 MTLNVTCRWKNKEEDGID-------GKKVAQEGSTDPTEKYVNSNVYAHQMTFEPQGKLQ 223
Query: 61 DMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
Y + + P++ +ILIAKLRPG I+V M K IG DHAKFSPVATA YRLLP I
Sbjct: 224 REYFGGENAIRPVNPNILIAKLRPGQTINVRMHCCKGIGADHAKFSPVATASYRLLPDIK 283
Query: 119 LTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
+T+ I G A+ Q F GVI +E +G
Sbjct: 284 ITKPIVGADAKAFQKCFPRGVIGLEDDKESG 314
>gi|384248203|gb|EIE21688.1| insert subdomain of RNA polymerase alpha subunit [Coccomyxa
subellipsoidea C-169]
Length = 372
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 23/144 (15%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ-----GDMYKSSD 67
E +++ F+L ++C + DM KV + ++W+P GS+ Y SS
Sbjct: 160 ETNSIVFKLDVRCRREG---------DMMVNEKVKSGQLRWLPNGSEMPEETNCRYASSQ 210
Query: 68 ---VGP-----IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+GP +HDDIL+AK+RPG EI + V+ G +HAK+SPVATA+YRL P++ +
Sbjct: 211 EALLGPAGARLVHDDILLAKMRPGQEIVLEAHCVRGTGAEHAKWSPVATAWYRLQPEVAI 270
Query: 120 TQEIEGEMAQRLQTMFSPGVISIE 143
Q + G A L PG+ ++E
Sbjct: 271 LQPVVGPKADALAAA-CPGLFTVE 293
>gi|449299411|gb|EMC95425.1| hypothetical protein BAUCODRAFT_541052 [Baudoinia compniacensis
UAMH 10762]
Length = 388
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDM-----------YEKHKVFTKDIQWVPIGSQ 59
P + +T+ LK++C + + Y V+ + + P G Q
Sbjct: 160 PNDHNTIVVTLKVECRWATEQDDGRDGRQLAQEGETDPEVRYVGSNVYAHQLVFEPQGEQ 219
Query: 60 GDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
+ + + P++ DILIAKLRPG +ID+ K IG DHAKFSPVATA YRLLP I
Sbjct: 220 TQHFSGENAIRPVNPDILIAKLRPGQKIDLRCHCYKGIGMDHAKFSPVATASYRLLPDIN 279
Query: 119 LTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
+ + I G A++ Q F GVI ++ G
Sbjct: 280 IIKPILGAEAKKFQRCFPRGVIDLKHDDETG 310
>gi|342319511|gb|EGU11459.1| Hypothetical Protein RTG_02619 [Rhodotorula glutinis ATCC 204091]
Length = 785
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
P + +T+ F L +C + + ++ +V + ++ + G Q +++
Sbjct: 157 PTDLNTVVFSLIARCERRKDVKKGETDPHKIWSGVEVLSSNLSFSSRGGQDELFGDRPPK 216
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
P DDIL+AK+R G EI + VK IG+DHAK+SPVATA YRLLP I + +I E+
Sbjct: 217 PAIDDILVAKMRGGQEIVAELHCVKGIGKDHAKWSPVATASYRLLPTIDILADIPPELHS 276
Query: 130 RLQTMFSPGVISIEKKPNAGVVA 152
+ + F PGV IE++ VVA
Sbjct: 277 KFEACFPPGV--IEQRSGRLVVA 297
>gi|156089735|ref|XP_001612274.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
gi|154799528|gb|EDO08706.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
Length = 319
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
+++++ F LK++C K + ++ V+ D++WVP+ Q +++K + PI
Sbjct: 117 DKNSVCFHLKVECKKESLAGRTNLP--------VYAGDMKWVPLSDEQAELFKDNPPKPI 168
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE--IEGEMAQ 129
H DIL+ KL PG EID+ + K IG+ HAK+SPV TA YR P IT +++ + + +
Sbjct: 169 HKDILLTKLSPGQEIDLKAYLEKGIGKTHAKWSPVCTAVYRFKPDITFSEDEPLTNDEVE 228
Query: 130 RLQTMFSPGVISIEK 144
L + GV S +K
Sbjct: 229 ELVQICPMGVFSADK 243
>gi|67611563|ref|XP_667165.1| DNA-directed RNA polymerase I [Cryptosporidium hominis TU502]
gi|54658273|gb|EAL36936.1| DNA-directed RNA polymerase I [Cryptosporidium hominis]
Length = 344
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
E++++ F+L +KCTK +H + K +++KD+ W+P+ +Q + S +
Sbjct: 139 EKNSVCFKLNVKCTKD----DINHEKGITSKA-IYSKDLVWIPLSDNQRKKFGKSPPKVV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ-EIEGEMAQR 130
DDILI KLRPG I+ ++ K+IGR HAK+SPV TA YRLLP+ I G A +
Sbjct: 194 TDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPEFGFPNGPISGSDALK 253
Query: 131 LQTMFSP 137
L+ P
Sbjct: 254 LRDTVCP 260
>gi|328866801|gb|EGG15184.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 355
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG---P 70
+DTL F+L ++C K + + V + ++W P Q M+ + P
Sbjct: 154 EDTLIFKLNVRCYKDENGETVNGT--------VTSGQLKWEPTEDQESMFGENPEDFPRP 205
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL-TQEIEGEMAQ 129
+HDDI I KLRPG +D+ ++ K+IGR+H K+SPV TA YRL+P IT+ + + + + A+
Sbjct: 206 VHDDIPIVKLRPGQTVDIQLYCEKNIGREHIKWSPVGTASYRLMPDITVDSSKFDKKQAE 265
Query: 130 RLQTMFSPGVISIE 143
+L+ V IE
Sbjct: 266 KLKATCPKNVFDIE 279
>gi|84994468|ref|XP_951956.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide
[Theileria annulata strain Ankara]
gi|65302117|emb|CAI74224.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative [Theileria annulata]
Length = 329
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 11/117 (9%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPI-GSQGDMYKSSDVGPI 71
+++++ F+LK+K K D E +++ D++WVP+ +Q M+K + P+
Sbjct: 126 DKNSVCFKLKVKYNKF----------DQSEYLSIYSNDLKWVPLSNNQEIMFKDNPPKPV 175
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
+ DILI KL PG EID+ M+ K IG+ H+K+SPV+TA Y+ +PKI +I E +
Sbjct: 176 YGDILITKLGPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIVYNVDILLEFS 232
>gi|66356630|ref|XP_625493.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|323509937|dbj|BAJ77861.1| cgd8_300 [Cryptosporidium parvum]
Length = 344
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
E++++ F+L +KCTK +H + K +++KD+ W+P+ +Q + + +
Sbjct: 139 EKNSVCFKLNVKCTKD----DINHEKGITSKA-IYSKDLVWIPLSDNQRKKFGKTPPKVV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ-EIEGEMAQR 130
DDILI KLRPG I+ ++ K+IGR HAK+SPV TA YRLLP+ I G A +
Sbjct: 194 TDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPEFGFPNGPISGSDALK 253
Query: 131 LQTMFSP 137
L+ P
Sbjct: 254 LRDTVCP 260
>gi|402217101|gb|EJT97183.1| hypothetical protein DACRYDRAFT_59476 [Dacryopinax sp. DJM-731 SS1]
Length = 257
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 44 HKVFTKDIQWVPIGSQGDM--YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHA 101
H ++ ++W P+G+Q + Y + DI++ KLR G E+++ M VKS GRDHA
Sbjct: 45 HLLYASHLRWKPVGAQAALPDYLAEAPSVAKPDIILVKLRRGQELNIEMHCVKSCGRDHA 104
Query: 102 KFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVI 140
K+SPVATA RLLP + + + I ++ + FSPGVI
Sbjct: 105 KYSPVATATSRLLPYVRIFKSIPEQLQAKFTQSFSPGVI 143
>gi|440293650|gb|ELP86743.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Entamoeba invadens IP1]
Length = 289
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Query: 6 RLKYEPCEQDTLQFQLK-IKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK 64
R EP E++TL F + I TK + H + V++ DI W P G Q ++
Sbjct: 84 RAFLEPTEENTLVFHMDVINNTKDKTAVHKN----------VYSSDIIWEPQGDQETTFQ 133
Query: 65 SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
+ + DILIA+L G +I ++ K +G+DHAKFSPV TA YR++PKI +T
Sbjct: 134 KDPIRVVLGDILIAELAQGQQIKCKLYCCKGLGQDHAKFSPVCTAAYRMMPKIEVTA--V 191
Query: 125 GEMAQRLQTMFSPGVISIE 143
G+MA+ ++ V IE
Sbjct: 192 GKMAKEIKECCPLNVYDIE 210
>gi|224061238|ref|XP_002300385.1| predicted protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 35/161 (21%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ----------- 59
P E++T+ +L +C + + V++++++W+P GS+
Sbjct: 169 PNEKNTIVLKLHARCNRGQP------------RCSVYSQELKWLPNGSEFAKESEKPDSK 216
Query: 60 GDMYKSSDVG----------PIH--DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVA 107
Y S G PI +DI++AKL PG EI++ AVK +G+ HAK+SPV
Sbjct: 217 PSTYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEIELEAHAVKGMGKTHAKWSPVG 276
Query: 108 TAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNA 148
TA+YR+ P++ L + I+GE A+ L GV IE NA
Sbjct: 277 TAWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDTGNA 317
>gi|170579941|ref|XP_001895048.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
gi|158598143|gb|EDP36103.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
Length = 339
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 26/129 (20%)
Query: 16 TLQFQLKIKCTKS-ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD 74
L F++K+ C+++ + +++ ++YE V++ +W+PIG Q S P H
Sbjct: 156 NLIFEIKVNCSRNPNALKTATNPKEIYENAFVYSNSFKWIPIGDQ------STSLPCH-- 207
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTM 134
+K +GRDHAKFSPVATA YRLLP+I L ++ G A+R+++
Sbjct: 208 -----------------CLKGLGRDHAKFSPVATASYRLLPQIVLKKKFSGADARRVKSS 250
Query: 135 FSPGVISIE 143
FS GVI I+
Sbjct: 251 FSEGVIEID 259
>gi|212276110|ref|NP_001130839.1| uncharacterized protein LOC100191943 [Zea mays]
gi|194690246|gb|ACF79207.1| unknown [Zea mays]
gi|413926820|gb|AFW66752.1| hypothetical protein ZEAMMB73_992882 [Zea mays]
Length = 372
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 34/161 (21%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ---------GD 61
P E++T+ ++L + C K++ ++ V + +++W+P GSQ GD
Sbjct: 154 PNERNTIVYKLHVSCPKNS------------QRITVKSSELEWLPEGSQLSMSAPAQSGD 201
Query: 62 MYKS-------------SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
K+ +G + DI IA+L PG I++ AVK G HAK+SPVAT
Sbjct: 202 KQKTFTSFSQSQKEILEKPLGVKYKDITIARLGPGQAIELEAHAVKGTGNVHAKWSPVAT 261
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
A+YR+LP++ + +E+EG A+ L V IE N G
Sbjct: 262 AWYRMLPEVVILKEVEGPQAEELVNKCRVNVFDIEDLANGG 302
>gi|160331409|ref|XP_001712412.1| rpa5 [Hemiselmis andersenii]
gi|159765860|gb|ABW98087.1| rpa5 [Hemiselmis andersenii]
Length = 335
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%)
Query: 33 HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFA 92
++H ++ ++ +++K ++W G +K+ V P+ DILIAKL PG +I+ +
Sbjct: 138 RANHPNNFFKNISIYSKSLKWKKYGVLKSFFKNVPVKPVFKDILIAKLNPGQKIECECES 197
Query: 93 VKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
+ IG +HAKFSPV + FY++ PKI + EI G+ A L
Sbjct: 198 LIGIGNNHAKFSPVGSTFYKIFPKIKIISEIFGKEAVFL 236
>gi|242064360|ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
gi|241933300|gb|EES06445.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
Length = 370
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 34/161 (21%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ---------GD 61
P E++T+ ++L + C K + ++ V + +++W+P GSQ GD
Sbjct: 152 PNERNTVVYKLHVSCPKGS------------QRITVKSSELEWLPEGSQLSMAAPAQSGD 199
Query: 62 MYKS-------------SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
K+ +G DI IA+L PG I++ AVK +G+ HAK+SPVAT
Sbjct: 200 KQKTFTSFSQSQKEILEEPLGVKFKDITIARLGPGQAIELEAHAVKGVGKVHAKWSPVAT 259
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
A+YR+LP++ + ++IEG+ A+ L V IE N G
Sbjct: 260 AWYRMLPEVVILKDIEGDDAEELVKKCPVNVFDIEDLGNGG 300
>gi|363807500|ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 56/81 (69%)
Query: 63 YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
+ ++ +G + DI++AKL PG EI++ AVK IG+ HAK+SPVATA+YR+LP++ L +
Sbjct: 230 FSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEA 289
Query: 123 IEGEMAQRLQTMFSPGVISIE 143
+E E+A+ L+ V IE
Sbjct: 290 VEDELAEELKNKCPVNVFDIE 310
>gi|357460223|ref|XP_003600393.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
gi|355489441|gb|AES70644.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
Length = 399
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 35/157 (22%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS----------- 58
E E++T+ F+ ++C K + V + ++W+P GS
Sbjct: 168 ENNEKNTIVFKQHVRCEKGQP------------RLTVKSDTLKWLPNGSELIAEGTKSAA 215
Query: 59 -----------QGDMYK-SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPV 106
Q + K S D P + D+++AKL PG EI++ AVK IG+ HAK+SPV
Sbjct: 216 DPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPV 275
Query: 107 ATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
ATA+YR+LP++ LT++++ E+A+ L + V IE
Sbjct: 276 ATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIE 312
>gi|302774338|ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 25/121 (20%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS------ 66
E++T+ F L++KCT+ D V + ++W+P GS M S
Sbjct: 140 EKNTIVFSLEVKCTRQG---------DRMINASVKSDQLKWLPGGSLYSMTDDSNKTYTS 190
Query: 67 ----------DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPK 116
D+ P + DIL+AKLRPG I++ AVK IG+ HAK+SPVATA YR+LP+
Sbjct: 191 FSCRQDTIQNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAKWSPVATAAYRMLPE 250
Query: 117 I 117
+
Sbjct: 251 V 251
>gi|302770012|ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 25/121 (20%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS------ 66
E++T+ F L++KCT+ D V + ++W+P GS M S
Sbjct: 139 EKNTIVFSLEVKCTRQG---------DRMINASVKSDQLKWLPGGSLYSMTDDSNKTYTS 189
Query: 67 ----------DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPK 116
D+ P + DIL+AKLRPG I++ AVK IG+ HAK+SPVATA YR+LP+
Sbjct: 190 FSCRQDTIQNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAKWSPVATAAYRMLPE 249
Query: 117 I 117
+
Sbjct: 250 V 250
>gi|308806201|ref|XP_003080412.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
gi|116058872|emb|CAL54579.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
Length = 382
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 27/133 (20%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADD----MYEKHKVFTKDIQWVPIGSQ--------- 59
E +T+ L +C H DD V++ +QW P GSQ
Sbjct: 155 ETNTIVLSLHARC-------HRERLDDGSLGEVVNRSVYSNALQWCPDGSQLPEEERAKY 207
Query: 60 -------GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYR 112
+ + ++G +HDDIL+ KL PG EI++ VK IG++H+K+SPV T +YR
Sbjct: 208 SDFKRSQRESFGEEELGCVHDDILLVKLAPGQEIELECHCVKGIGQEHSKWSPVGTCWYR 267
Query: 113 LLPKITLTQEIEG 125
++P+IT+ + I G
Sbjct: 268 MVPEITILEPITG 280
>gi|403222412|dbj|BAM40544.1| DNA-directed RNA polymerases I and III subunit [Theileria
orientalis strain Shintoku]
Length = 305
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 15/143 (10%)
Query: 9 YEPCEQ----DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-QGDMY 63
++ CE+ +++ F+LK+K ++ S + V++ ++WVP+ S Q +
Sbjct: 110 FKNCEEINDKNSVCFKLKVKYDRNEPNSGNYLP--------VYSSFLKWVPLSSNQEATF 161
Query: 64 KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP--KITLTQ 121
K++ P+HD+ILI KL PG EID+ ++ K G+ HAK+SPV+TAFY+ +P KI T
Sbjct: 162 KNNPPKPVHDNILITKLAPGQEIDLNVYLEKGTGKVHAKWSPVSTAFYKFMPSIKINDTP 221
Query: 122 EIEGEMAQRLQTMFSPGVISIEK 144
++ + L T+ V SI+
Sbjct: 222 KLSDSEKRDLATICPMDVFSIKN 244
>gi|302845439|ref|XP_002954258.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
gi|300260463|gb|EFJ44682.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
Length = 354
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 33/148 (22%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ----------- 59
P E++TL F+L + C + ++++F+ ++W+P GS+
Sbjct: 146 PSEKNTLVFKLDVTCKRG--------------ENRMFSGQLEWLPGGSELPEETTCRFAA 191
Query: 60 GDMYKSSDVG-----PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
G + +D +HDDIL+AKLRPG I + A K G++HAK+SPVATA+YRL
Sbjct: 192 GQAHLFADPATPKPRAVHDDILLAKLRPGQTIQLEAHATKGRGKEHAKWSPVATAWYRLQ 251
Query: 115 PKITLTQE--IEGEMAQRLQTMFSPGVI 140
P + + Q+ ++ ++ Q L + PG+
Sbjct: 252 PVVHVIQDVAVDSDVGQELMSA-CPGLF 278
>gi|168042851|ref|XP_001773900.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674744|gb|EDQ61248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 360
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 27/149 (18%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ---GDMYKSSDVG 69
E++T+ F++ + CT+ +S V + ++W+P GS+ M K + G
Sbjct: 145 EKNTIVFKIDVVCTRKGERVLNS---------SVTSDQMKWLPEGSEMPFNTMTKFTSFG 195
Query: 70 PI---------------HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
+ DI++AKLRPG I++ A+K G HAK+SPVATA YR+L
Sbjct: 196 SSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIKGSGNIHAKWSPVATARYRML 255
Query: 115 PKITLTQEIEGEMAQRLQTMFSPGVISIE 143
P++ L ++I+G++A+ L GV IE
Sbjct: 256 PEVNLMEDIQGKLAEELVQKCPTGVFDIE 284
>gi|402469296|gb|EJW04273.1| hypothetical protein EDEG_01455 [Edhazardia aedis USNM 41457]
Length = 313
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
E++ L+F LK ++M + V + DI+WVP+G+Q D I
Sbjct: 111 EKNALKFVLK-------------KQNNMNDIVVVTSDDIKWVPLGNQKDTLVPR--PRIK 155
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
I I K+ G EI++ M+A+K IG+DHAK+SPV YRL P I + ++I E A +LQ
Sbjct: 156 SGIPITKICNGQEIEIEMYAIKGIGKDHAKWSPVCPVSYRLHPAIEI-KDIYDEDAFKLQ 214
Query: 133 TMFSPGVISIEKKPNAG 149
FS GVI + + P
Sbjct: 215 KCFSSGVIDVSRCPETN 231
>gi|115452445|ref|NP_001049823.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|108707636|gb|ABF95431.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113548294|dbj|BAF11737.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|222624742|gb|EEE58874.1| hypothetical protein OsJ_10475 [Oryza sativa Japonica Group]
Length = 379
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 34/160 (21%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ---------GD 61
P E++T+ ++L + C K + + V + D++W+P GSQ GD
Sbjct: 154 PTERNTIVYKLHVSCKKGSP------------RLTVKSGDLEWLPEGSQLPLASPAQSGD 201
Query: 62 MYKS-------------SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
K+ +G DI IA+L PG I++ + AVK IG+ HAK+SPVAT
Sbjct: 202 KQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAVKGIGKVHAKWSPVAT 261
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNA 148
A+YR+LP++ L +EI+ A+ L V IE N
Sbjct: 262 AWYRMLPEVVLREEIKDADAEMLVAKCPVNVFDIEDLGNG 301
>gi|108707637|gb|ABF95432.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 352
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 34/160 (21%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ---------GD 61
P E++T+ ++L + C K + + V + D++W+P GSQ GD
Sbjct: 154 PTERNTIVYKLHVSCKKGSP------------RLTVKSGDLEWLPEGSQLPLASPAQSGD 201
Query: 62 MYKS-------------SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
K+ +G DI IA+L PG I++ + AVK IG+ HAK+SPVAT
Sbjct: 202 KQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAVKGIGKVHAKWSPVAT 261
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNA 148
A+YR+LP++ L +EI+ A+ L V IE N
Sbjct: 262 AWYRMLPEVVLREEIKDADAEMLVAKCPVNVFDIEDLGNG 301
>gi|429962182|gb|ELA41726.1| hypothetical protein VICG_01230 [Vittaforma corneae ATCC 50505]
Length = 298
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 42 EKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHA 101
E + + DI++VP ++G + S P ++L+ K+ PG+++++T A+K G HA
Sbjct: 124 EPVNLMSDDIEFVP--AEGQDHFSFRFKP---NVLVCKMVPGNQVEMTFKAIKGRGEQHA 178
Query: 102 KFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAGVVA 152
K+SPV+ YR++PKI L ++ GE A+ LQ FSPGVI I N VVA
Sbjct: 179 KWSPVSLCSYRIMPKIILEKDFYGEDAKELQACFSPGVIEIIN--NKAVVA 227
>gi|356527169|ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Glycine max]
Length = 393
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 63 YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
+ ++ +G + DI++AKL PG EI++ AVK G+ HAK+SPVAT +YR+LP++ L ++
Sbjct: 235 FSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKD 294
Query: 123 IEGEMAQRLQTMFSPGVISIE 143
+E E+A+ L+ V IE
Sbjct: 295 VEDELAEELKNKCPVNVFDIE 315
>gi|159116466|ref|XP_001708454.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
gi|157436566|gb|EDO80780.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
Length = 350
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV---- 68
E++T+ F+L + T A++S SS D+ V+++DI WVPIG Q D +V
Sbjct: 115 ERNTVVFKLDV--TAPATYS-SSFNDEEPGWFYVYSRDIYWVPIGGQKDWLLKQEVRADM 171
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
P+ DIL+AKL PG I ++ K IGR HAKF PV TA+Y++ +I L ++
Sbjct: 172 SSLPAPLDPDILLAKLAPGQRIFCEIYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKD 229
>gi|209876648|ref|XP_002139766.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Cryptosporidium muris RN66]
gi|209555372|gb|EEA05417.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Cryptosporidium muris RN66]
Length = 351
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
E++++ F+L ++C K + + +++KD+ WVP+ SQ +++ +
Sbjct: 148 EKNSVCFKLCVECNK-----YDIDDKNGITSKAIYSKDLIWVPMSESQKQIFEKKPPSVV 202
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ-EIEGEMAQR 130
+ DILI KLRPG I+ ++ K IG+ HAK+SPV+TA YRLLP+ + I G+ A+
Sbjct: 203 YPDILITKLRPGQVIEAILYCEKGIGKTHAKWSPVSTATYRLLPEFKFPEGYITGKDAKE 262
Query: 131 LQTMFSPGVISIE 143
+ V IE
Sbjct: 263 FVEVCPMNVFDIE 275
>gi|429328059|gb|AFZ79819.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 315
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
++++L F+L KC +S S ++ + ++ KD+ W P +Q ++ PI
Sbjct: 117 DKNSLCFKLSAKCLRSDSQGRNTLS--------LYAKDLVWHPFNEAQKLKFQDDPPRPI 168
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
H DIL+ KL G E+D+T + K IG+ H+K+SPV+TA YR P+IT ++E
Sbjct: 169 HGDILLTKLAGGQELDLTAYLEKGIGKTHSKWSPVSTAVYRFKPEITFSEE 219
>gi|357121301|ref|XP_003562359.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
rpac1-like [Brachypodium distachyon]
Length = 360
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 33/160 (20%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS---- 66
P E++T+ ++L + C K + ++ V + ++W+P GSQ M ++
Sbjct: 143 PNERNTIVYKLHVSCEKGS------------QRLTVKSGQLEWLPEGSQLLMASAAQGEK 190
Query: 67 -----------------DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATA 109
+G + DI IA+L PG I++ AVK +G+ HAK+SPVATA
Sbjct: 191 QKTYTSFGQSQKNISGRSIGVKYKDITIARLGPGQAIELEAHAVKGVGKVHAKWSPVATA 250
Query: 110 FYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAG 149
+YR+LP++ L +EI+ A+ L V IE N
Sbjct: 251 WYRMLPEVVLLKEIKDGEAEELVKKCPVNVFDIEDLGNGA 290
>gi|145349074|ref|XP_001418965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579195|gb|ABO97258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 360
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ---------GDMY 63
E +T+ ++ ++C K + V++ + W P GSQ D
Sbjct: 133 ETNTIVLKMHVRCHKE---RNPDGTLGEVVNRSVYSNALTWCPEGSQLPEENGAKYSDFK 189
Query: 64 KSS-------DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPK 116
+S ++G +HDDIL+ KL PG E+++ VK IG++HAK+SPV T +Y+++P+
Sbjct: 190 RSQKEVVGDQELGCVHDDILLVKLAPGQEVELECHCVKGIGQEHAKWSPVGTCWYKMVPE 249
Query: 117 ITLTQEIEG 125
IT+ + I G
Sbjct: 250 ITILEPITG 258
>gi|71031382|ref|XP_765333.1| DNA-directed RNA polymerase I [Theileria parva strain Muguga]
gi|68352289|gb|EAN33050.1| DNA-directed RNA polymerase I, putative [Theileria parva]
Length = 303
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 56 IGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ S M+K + P++DDILI KL PG EID+ M+ K IG+ H+K+SPV+TA Y+ +P
Sbjct: 142 LSSNSLMFKDNPPKPVYDDILITKLAPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMP 201
Query: 116 KITLTQE-----IEGEMAQRLQTM----FSPGVISIEKKPNA 148
KI + E E +M ++ M FS G ++IE N
Sbjct: 202 KIEFSTEHKLTANEKKMLPKICPMNVFSFSKGEVNIENPLNC 243
>gi|255563568|ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
gi|223538024|gb|EEF39637.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
Length = 374
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 36/131 (27%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--- 67
P E++T+ F+L C + + V++++++W+P GSQ + K S+
Sbjct: 157 PNEKNTIVFKLHASCKRGEP------------RRTVYSEELKWLPGGSQ--LLKESEKAD 202
Query: 68 -------------------VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
V P D I++AKL PG EI++ AVK +G+ HAK+SPVAT
Sbjct: 203 SKPSTYTSFTDKQDFIPKPVSPSEDKIIVAKLGPGQEIELEAHAVKGLGKTHAKWSPVAT 262
Query: 109 AFYRLLPKITL 119
A+YR+LP++ L
Sbjct: 263 AWYRMLPEVVL 273
>gi|412991198|emb|CCO16043.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bathycoccus
prasinos]
Length = 438
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 53/169 (31%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-------------- 58
E++T+ F+L +KC K S + D + + KV+++D+ W+P GS
Sbjct: 172 EKNTIVFKLHVKCQKERDASGNILPDSILHE-KVYSRDLVWLPKGSELEDESQGGEGADD 230
Query: 59 --------------------------------------QGDMYKSSDVGPIHDDILIAKL 80
Q + + +HDDIL+AKL
Sbjct: 231 DDDDDDDDDEDDDDMSDDDEKKKRKKKKIKTFSNFSTSQETKFGKEGIKTVHDDILLAKL 290
Query: 81 RPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
PG EI++ +KSIG DHAKFSPV T +YRL+P + + I G A+
Sbjct: 291 VPGQEIELEAHCMKSIGADHAKFSPVGTCWYRLVPTVYFKKPIVGADAK 339
>gi|123464689|ref|XP_001317116.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121899842|gb|EAY04893.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 341
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFS 104
++ + + W+P +G K +V P+H DI I K+ PG I + A+K IG DHAKF
Sbjct: 166 EILSSHLVWMPY--EGQREKFGNVAPLHADIPITKILPGQTIHLYCRAIKGIGSDHAKFQ 223
Query: 105 PVATAFYRLLPKITLTQEIEG--EMAQRLQTMFSPGVISIE 143
PV TAFYRL+P I + EI + Q+L + GV IE
Sbjct: 224 PVCTAFYRLVPSIQVKDEINSSEKKQQKLISKCPMGVFDIE 264
>gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195617|gb|AEE33738.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 302
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 36/129 (27%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-------------- 58
E++T+ F+L +KC K+ + KV T D++W+P GS
Sbjct: 158 EKNTIVFKLHVKCPKNRP------------RLKVLTSDLKWLPNGSELLRESENKTSKPK 205
Query: 59 --------QGDM--YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
Q + + ++ + P DILIAKL PG EI++ AVK IG+ HAK+SPV T
Sbjct: 206 TYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGT 265
Query: 109 AFYRLLPKI 117
A+YR+ P++
Sbjct: 266 AWYRMHPEV 274
>gi|47204376|emb|CAG13794.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 97 GRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAGVVA 152
G+DHAK+SPVATA YRLLP+ITL + +EGE A+RLQ F PGVI +E PN VA
Sbjct: 1 GKDHAKYSPVATASYRLLPEITLLEPVEGEKAERLQRCFLPGVIDLE-DPNGRKVA 55
>gi|300708874|ref|XP_002996608.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
gi|239605923|gb|EEQ82937.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
Length = 293
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
V + DI+++ Q D+ I DI IAKL P + + M A K++GR HAK+SP
Sbjct: 123 VTSNDIKYIKKDGQPDI-------EISKDIPIAKLAPKQALIIEMVACKNVGRVHAKWSP 175
Query: 106 VATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
V TA YRL+P I + ++ E A++LQ FSPGVIS+ K+
Sbjct: 176 VCTAAYRLMPIIKI-EDFYDEEAEKLQKCFSPGVISLVKE 214
>gi|221056596|ref|XP_002259436.1| DNA-diDNA-directed RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809507|emb|CAQ40209.1| DNA-diDNA-directed RNA polymerase I, putative [Plasmodium knowlesi
strain H]
Length = 333
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 4 NLRLKYEPCEQ-DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM 62
N + +YE + F+L +K TK A S +S + ++++D++W PI Q +
Sbjct: 122 NFKEEYEKYNHLNCFCFKLHVKFTKKAGSSETSQS--------IYSRDLKWCPINEQQKL 173
Query: 63 -YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
++ + + D+ILI KL G EI++ F K IG+ HAK+SPV TA Y++ P +
Sbjct: 174 RFQKNPPKVVDDNILITKLANGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPSFSFN 232
>gi|407407741|gb|EKF31429.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi marinkellei]
Length = 393
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ D++W P+ Q +D V +H DI++ KL PG + + A+K IG HAK
Sbjct: 201 VYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAK 260
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAGVVA 152
++PV+ FY L I L + I G+ A++LQ + GV + ++ + VVA
Sbjct: 261 WTPVSVCFYELYTSIHLREPIRGDCAEKLQRICPVGVFGVNEEGESEVVA 310
>gi|218191485|gb|EEC73912.1| hypothetical protein OsI_08749 [Oryza sativa Indica Group]
Length = 332
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 34/162 (20%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM-------Y 63
P E++T+ ++L + C K + + V + D++W+P GS+ + Y
Sbjct: 152 PNERNTIVYKLHVSCKKGSP------------RLTVKSGDLEWLPEGSRLPLASPAQSRY 199
Query: 64 KSSD---------------VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
K +G DI IA+L PG I + + VK +G+ HAK+SPVAT
Sbjct: 200 KQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIVLEVHGVKGMGKVHAKWSPVAT 259
Query: 109 AFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
A+YR+ P++ +EI+G+ A++L V IE N +
Sbjct: 260 AWYRMFPEVVFRKEIKGDNAEKLVKKCPVNVFDIEDLGNVTI 301
>gi|303388073|ref|XP_003072271.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
gi|303301410|gb|ADM10911.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
Length = 305
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 17/135 (12%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E E+++L+F L +K + + D + V++ DI+W+P+G+Q +M K++
Sbjct: 109 EMNERNSLKFSLDVK---------NENKDVL----NVYSDDIKWIPLGNQREMIKNAKFS 155
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
+L+ KL G +I + K+ G+ HAK+SPV A YRLLP I + + E A
Sbjct: 156 S---RVLMFKLAHGQKISAEVVCTKNTGKTHAKWSPVCPATYRLLPLIEIGDFFD-EDAF 211
Query: 130 RLQTMFSPGVISIEK 144
R+Q FS GVI +++
Sbjct: 212 RIQKCFSEGVIEVKQ 226
>gi|308158822|gb|EFO61385.1| DNA-directed RNA polymerase subunit D [Giardia lamblia P15]
Length = 350
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV---- 68
E++T+ F+L + T A++S + + ++ + V+++DI W+P+G Q D +V
Sbjct: 115 ERNTVVFKLDV--TAPATYSGNFNGEEPGWFY-VYSRDICWIPVGGQKDWLLKQEVRSDM 171
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
P+ +IL+AKL PG I ++ K IGR HAKF PV TA+Y++ +I L ++
Sbjct: 172 SSLPAPLDPNILLAKLAPGQRIFCELYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKD 229
>gi|68069197|ref|XP_676509.1| DNA-directed RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56496241|emb|CAH97452.1| DNA-directed RNA polymerase I, putative [Plasmodium berghei]
Length = 334
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM-YKSSDVGPIHD 73
+ F+L +KC S +++ ++ Y+ +++KD++W P+ + + ++S+ + D
Sbjct: 134 NCFCFKLHVKCN---SINNNKIGNENYQC--IYSKDLKWCPLNEEQKIKFESNPPKVVDD 188
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ILI KL G EI++ F K IG+ HAK+SPV TA Y++ P
Sbjct: 189 NILITKLGNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFP 230
>gi|85690991|ref|XP_965895.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi GB-M1]
gi|19068462|emb|CAD24930.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329785|gb|AGE96054.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 305
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH 72
E+++L+F L ++ + V++ DI+W P+GSQ ++++ DV
Sbjct: 112 ERNSLRFTLDVRNESEGVLN-------------VYSDDIRWNPVGSQREIFR--DV-KFS 155
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQ 132
+L+ +L G +I + K++G+ HAK+SPV A YRL+P I + +I E A +LQ
Sbjct: 156 SRVLMFRLARGQKISAELVCTKNVGKVHAKWSPVCPATYRLMPLIEIG-DIFDEDAYKLQ 214
Query: 133 TMFSPGVISIEKKPNAG 149
FS GVI + +P+ G
Sbjct: 215 KCFSEGVIDV--RPSDG 229
>gi|253744733|gb|EET00889.1| DNA-directed RNA polymerase subunit D [Giardia intestinalis ATCC
50581]
Length = 350
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV---- 68
E++T+ F+L + T A++ S D V+++DI WVPIG Q + +V
Sbjct: 115 ERNTVVFKLDV--TAPATYP-GSFQDGEPRWFYVYSRDIHWVPIGGQKNWLPEQEVRPGT 171
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
P+ DIL+AKL PG I ++ K +G HAKF PV TA+Y++ +++L ++
Sbjct: 172 SSLPAPLDPDILLAKLAPGQRIFCEIYCHKGVGHTHAKFQPVGTAWYKMKTQVSLDKD 229
>gi|396080763|gb|AFN82384.1| RNA polymerase I and III subunit AC40 [Encephalitozoon romaleae
SJ-2008]
Length = 305
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFS 104
V++ DI+W+P G Q + +++ +L+ KL G +I+ + K+IGR HAK+S
Sbjct: 131 NVYSDDIKWIPFGGQREALRNA---KFCSGVLMFKLARGQKINAELVCTKNIGRVHAKWS 187
Query: 105 PVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISI 142
PV A YRL+P I + ++ E A +LQ FS GVI +
Sbjct: 188 PVCPATYRLMPLIEIG-DVFDEDAYKLQKCFSEGVIDV 224
>gi|70943148|ref|XP_741656.1| DNA-directed RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56520171|emb|CAH77688.1| DNA-directed RNA polymerase I, putative [Plasmodium chabaudi
chabaudi]
Length = 297
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM-YKSSDVGPIHD 73
+ F+L +KC S +++ ++ Y+ +++KD++W P+ + + ++++ + D
Sbjct: 134 NCFCFKLHVKCN---SINNNKIGNENYQC--IYSKDLKWCPLNEEQKIKFENNPPKVVDD 188
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ILI KL G EI++ F K IG+ HAK+SPV TA Y++ P
Sbjct: 189 NILITKLGSGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPSFNF 234
>gi|389583971|dbj|GAB66705.1| DNA-directed RNA polymerase I, partial [Plasmodium cynomolgi strain
B]
Length = 333
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 4 NLRLKYEPCEQ-DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM 62
N + +YE + F+L +K TK S +S + ++++D++W PI Q
Sbjct: 122 NFKEEYEKYNHLNCFCFKLHVKFTKKVGSSETSQS--------IYSRDLKWCPINEQQKA 173
Query: 63 -YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT- 120
++ + + D+ILI KL G EI++ F K IG+ HAK+SPV TA Y++ P +
Sbjct: 174 RFQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPAFSFNT 233
Query: 121 -QEIEGEMAQRLQTMFSPGVISIE 143
+++ E L ++ V +E
Sbjct: 234 CEKLTKEEKHDLVSICPKNVFDVE 257
>gi|449461051|ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 39/139 (28%)
Query: 8 KYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM----- 62
K P E +T+ F+L C + + V +K + W+P GS+ +
Sbjct: 165 KDAPNENNTIVFRLHACCERGKP------------RLTVTSKALTWLPNGSEFPLVSDKS 212
Query: 63 ----------------------YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDH 100
+ ++ +GP DI++A+L PG EI++ AVK +G+ H
Sbjct: 213 VSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTH 272
Query: 101 AKFSPVATAFYRLLPKITL 119
AK+SPVATA+YR+LP++ L
Sbjct: 273 AKWSPVATAWYRMLPEVVL 291
>gi|401825113|ref|XP_003886652.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
gi|395459797|gb|AFM97671.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 19/140 (13%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E E+++L+F L +K + + D+ V++ DI+W+P GSQ K DV
Sbjct: 109 ELNERNSLRFVLDVK----------NESKDVL---NVYSDDIKWIPFGSQRGTLK--DVK 153
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
+L+ KL G I + K+IG+ HAK+SPV A YRL+P I + ++ E A
Sbjct: 154 -FSSKVLMFKLARGQRISAELVCTKNIGKVHAKWSPVCPATYRLMPLIEIG-DVFDEDAY 211
Query: 130 RLQTMFSPGVISIEKKPNAG 149
+LQ FS GVI + +P+ G
Sbjct: 212 KLQKCFSEGVIDV--RPSDG 229
>gi|156099087|ref|XP_001615546.1| DNA-directed RNA polymerase I [Plasmodium vivax Sal-1]
gi|148804420|gb|EDL45819.1| DNA-directed RNA polymerase I, putative [Plasmodium vivax]
Length = 333
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 4 NLRLKYEPCEQ-DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS-QGD 61
N + +YE + F+L +K TK A S + + ++++D++W PI Q
Sbjct: 122 NFKEEYEKYNHLNCFCFKLHVKFTKKAGSSETCQS--------IYSRDLKWCPINEHQKA 173
Query: 62 MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
++ + + D+ILI KL G EI++ F K IG+ HAK+SPV TA Y++ P +
Sbjct: 174 RFQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPAFSFN 232
>gi|449017050|dbj|BAM80452.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 383
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 56/89 (62%)
Query: 56 IGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ S D + + + IL+ K+ G +D+ M AVK +G DHAK+SPVATA+Y+++P
Sbjct: 191 LASAADSTAAVEPVQVQRGILLTKMLRGQRLDIRMEAVKGLGHDHAKWSPVATAYYKMVP 250
Query: 116 KITLTQEIEGEMAQRLQTMFSPGVISIEK 144
++ L E++GE+A+ ++ + V IE+
Sbjct: 251 RVHLKGELKGELAETIRGACAVHVFDIEE 279
>gi|162605758|ref|XP_001713394.1| DNA-directed RNA polymerase 40k chain [Guillardia theta]
gi|13794326|gb|AAK39703.1|AF083031_60 DNA-directed RNA polymerase 40k chain [Guillardia theta]
Length = 339
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 43 KHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
K +F++ + + + D+YK+ + P++ DILI K+ PG EI + + G +HAK
Sbjct: 151 KISIFSEMLNLMYKSIEFDLYKNQLIFPVYRDILILKINPGQEIHCECHCLINSGLNHAK 210
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPN 147
FSPV T FYR+ P + + +EI + + GV +EK N
Sbjct: 211 FSPVGTIFYRMEPYVKILKEIISFDSSSFLKICPTGVFEVEKLGN 255
>gi|303277947|ref|XP_003058267.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460924|gb|EEH58218.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 410
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 40/146 (27%)
Query: 11 PCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS------------ 58
P E++T+ F++ +KCT+ + + A KV+T + W+P GS
Sbjct: 161 PTEKNTIVFKMCVKCTREKTTDGTKGA---LINDKVYTDSLVWLPNGSELPPDEETKFTQ 217
Query: 59 ----QGDMYKSSD---------------------VGPIHDDILIAKLRPGHEIDVTMFAV 93
QG+ K + + +HDDIL+ K+ G EI++
Sbjct: 218 FSCDQGEYLKKRNKESKELGEKEYFNRNGKDPNVISTVHDDILLVKMVAGQEIELEAHCT 277
Query: 94 KSIGRDHAKFSPVATAFYRLLPKITL 119
K G++HAK+SPV T +YR++P++T
Sbjct: 278 KGDGKEHAKWSPVGTTWYRMVPQVTF 303
>gi|71423439|ref|XP_812461.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70877243|gb|EAN90610.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ D++W P+ Q +D V +H DI++ KL PG + + A+K IG HAK
Sbjct: 201 VYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAK 260
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
++PV+ FY L I L + I G+ A +LQ + GV + ++
Sbjct: 261 WTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEE 303
>gi|407847030|gb|EKG02938.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ D++W P+ Q +D V +H DI++ KL PG + + A+K IG HAK
Sbjct: 201 VYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAK 260
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
++PV+ FY L I L + I G+ A +LQ + GV + ++
Sbjct: 261 WTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEE 303
>gi|71656797|ref|XP_816940.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70882101|gb|EAN95089.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ D++W P+ Q +D V +H DI++ KL PG + + A+K IG HAK
Sbjct: 201 VYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAK 260
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
++PV+ FY L I L + I G+ A +LQ + GV + ++
Sbjct: 261 WTPVSVCFYELKTSIYLREPIRGDCATKLQRICPVGVFGVNEE 303
>gi|399950006|gb|AFP65662.1| DNA-directed RNA polymerase 40k chain [Chroomonas mesostigmatica
CCMP1168]
Length = 350
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%)
Query: 34 SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAV 93
++H +D + VF+ + G K+S + P DIL+AKL PG +I V
Sbjct: 156 ANHPNDSFGNIAVFSNSLLQKNTGILNSWMKNSPIKPAFKDILVAKLNPGQKIIAECHCV 215
Query: 94 KSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE 143
G HAKFSPV T+FY++ P+I + EI + A ++ V IE
Sbjct: 216 LGTGNIHAKFSPVGTSFYKIFPRIKIISEILDKHAHVIRQKCPVKVFDIE 265
>gi|124804792|ref|XP_001348113.1| DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
gi|23496369|gb|AAN36026.1|AE014842_48 DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
Length = 333
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM-YKSSDVGPIHD 73
+ F+L +K FS +D Y+ +++KD++W PI Q + ++ + + +
Sbjct: 134 NCFCFKLHVK------FSSKRTGNDNYQS--IYSKDLKWCPINEQQRIKFEKNPPKVVDE 185
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL--TQEIEGEMAQRL 131
+ILI K+ G EI++ F K IG+ HAK+SPV TA Y++ P + +++ E + L
Sbjct: 186 NILITKISSGQEIELICFLQKGIGKTHAKWSPVCTAVYKMYPHFSFNTNEQLSYEEKKDL 245
Query: 132 QTMFSPGVISIE 143
+ V IE
Sbjct: 246 VNICPQKVFDIE 257
>gi|83282536|ref|XP_729812.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and iii 40 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 286
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 46 VFTKDIQWVPIGS-QGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFS 104
+++KD++W P+ Q ++++ + D+ILI KL G EI++ F K IG+ HAK+S
Sbjct: 111 IYSKDLKWCPLNEEQKKKFENNPPKVVEDNILITKLGSGQEIELICFLEKGIGKTHAKWS 170
Query: 105 PVATAFYRLLPKITLT--QEIEGEMAQRLQTMFSPGVISIEKKPN 147
PV TA Y++ P ++ + L T+ V IE+ N
Sbjct: 171 PVCTAVYKMFPSFNFDVHEKFTNYEKKDLVTICPKNVFDIEESGN 215
>gi|399218932|emb|CCF75819.1| unnamed protein product [Babesia microti strain RI]
Length = 318
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 13 EQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGPI 71
E +++ F+LK+ +H ++ + Y+ V+T ++W+P+G Q + P+
Sbjct: 119 ESNSVCFELKV--------AHDANCIEKYQS--VYTSQLKWIPLGDEQHKRLGKNQPRPL 168
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
+DIL+ KL PG +I++ + K IGR HAK+S V++A YR P I
Sbjct: 169 FEDILLTKLAPGQQIELKAYLEKGIGRTHAKWSIVSSATYRFYPHI 214
>gi|330038595|ref|XP_003239642.1| DNA-directed RNA polymerase 40k chain [Cryptomonas paramecium]
gi|327206566|gb|AEA38744.1| DNA-directed RNA polymerase 40k chain [Cryptomonas paramecium]
Length = 429
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%)
Query: 42 EKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHA 101
+K+ +++ I+ G K+ + P+ DILIAKL G +I G HA
Sbjct: 147 QKYLIYSNIIKLKLYGIHSSWLKNLHIKPVFGDILIAKLNSGQKIKCECHCNFGNGEAHA 206
Query: 102 KFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
KFS V+TAFYR+ P+I L EI + A ++ T V +E K
Sbjct: 207 KFSGVSTAFYRIFPRIKLVNEIINDHAVKIFTKCPVNVFQLENK 250
>gi|269860308|ref|XP_002649876.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066716|gb|EED44189.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 282
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
++ I D+LI KL P + I + + + IG+ H K+SPVA +RLLP I L ++ GE
Sbjct: 136 EIFDIQKDVLICKLAPKNTISMKLRIAEGIGKTHVKWSPVALCTFRLLPHIKLNRKFTGE 195
Query: 127 MAQRLQTMFSPGVISI 142
A RL+ S GVI I
Sbjct: 196 DAVRLKNACSQGVIEI 211
>gi|401419509|ref|XP_003874244.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490479|emb|CBZ25739.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 434
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 46 VFTKDIQWVPIGSQ-------------------GDMYKSSDVGPIHDDILIAKLRPGHEI 86
V+++ +QWVP+ Q G V +H DIL+ KL PG I
Sbjct: 218 VYSRQLQWVPLPGQDKKTGAVAGVCQAGSEECAGADDDDDAVFLVHPDILLTKLGPGQRI 277
Query: 87 DVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIE--- 143
+ AVK +G HAK+SPV+ +Y + + L + + G A+ L GV E
Sbjct: 278 KLKAIAVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPTGVFGYEGGQ 337
Query: 144 KKPNAGVVA 152
K A VVA
Sbjct: 338 KGAAATVVA 346
>gi|429966309|gb|ELA48306.1| hypothetical protein VCUG_00142 [Vavraia culicis 'floridensis']
Length = 304
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
I +LI KL P +DV M+A K ++HAK+S V +YR+ P +TLT+ + + A
Sbjct: 158 IKQGVLITKLGPNQHLDVEMYATKGTAKEHAKYSTVNICYYRMHPILTLTRSFKNDDAHL 217
Query: 131 LQTMFSPGVISIEKK 145
L+ F GVI I K
Sbjct: 218 LRKRFKNGVIGIRKN 232
>gi|303281664|ref|XP_003060124.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458779|gb|EEH56076.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 333
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 64 KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ D GP ++I KLR G +I++ A K +GRDHAK+ PVATA YR P+IT+ +E+
Sbjct: 158 RGPDDGPDIPGVVIVKLRRGQQINMRCVARKGVGRDHAKWQPVATATYRFEPEITINEEL 217
Query: 124 EGEMAQRLQTMFSPGVISIEKKPNA 148
+ + + F +E P A
Sbjct: 218 MATLTEEEKMAF------VESSPTA 236
>gi|398014106|ref|XP_003860244.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
gi|322498464|emb|CBZ33537.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
Length = 442
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 30/137 (21%)
Query: 46 VFTKDIQWVPI----------------------GSQGDMYKSSD-----VGPIHDDILIA 78
V+++ +QWVP+ G+ G S+D V +H DIL++
Sbjct: 218 VYSRQLQWVPLPGQDKKTGAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHPDILLS 277
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPG 138
KL PG I + AVK +G HAK+SPV+ +Y + + L + + G A+ L G
Sbjct: 278 KLGPGQRIKLKAIAVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPAG 337
Query: 139 VISIE---KKPNAGVVA 152
V E K A VVA
Sbjct: 338 VFGYEGGQKGAAATVVA 354
>gi|146084517|ref|XP_001465028.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
gi|134069124|emb|CAM67271.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
Length = 442
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 30/137 (21%)
Query: 46 VFTKDIQWVPI----------------------GSQGDMYKSSD-----VGPIHDDILIA 78
V+++ +QWVP+ G+ G S+D V +H DIL++
Sbjct: 218 VYSRQLQWVPLPGQDKKTGAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHPDILLS 277
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPG 138
KL PG I + AVK +G HAK+SPV+ +Y + + L + + G A+ L G
Sbjct: 278 KLGPGQRIKLKAIAVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCPAG 337
Query: 139 VISIE---KKPNAGVVA 152
V E K A VVA
Sbjct: 338 VFGYEGGQKGAAATVVA 354
>gi|168026615|ref|XP_001765827.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683004|gb|EDQ69418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L +KCT + +S + + D +P+ + G +++D+G
Sbjct: 99 CEYCSIEFHLSVKCTGDQTLDVTSL--------DLVSSDPSIIPVDAAG---RAADMGGF 147
Query: 72 HDD----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ ILI KLR G E+ + A K IG+DHAK+SP AT ++ P+I + + +
Sbjct: 148 ESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFQYEPEIHINEAL 203
>gi|412990464|emb|CCO19782.1| DNA-directed RNA polymerase II subunit RPB3 [Bathycoccus prasinos]
Length = 298
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 16 TLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDI 75
+ L +KC+ S H D+ H + D +++P+ S+ P +
Sbjct: 94 NVHLNLAVKCS-------SDHTLDVTTNH-LICADAKFLPVNFHPIDSDSNKQEP--PGV 143
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
LI KLR E+ V A K IG+DHAK+SPVATA Y+ P++ L +E+ ++ R
Sbjct: 144 LIVKLRKNQELVVKCIARKGIGKDHAKWSPVATAVYKCEPELYLNEELTNKLTDR 198
>gi|255071753|ref|XP_002499551.1| predicted protein [Micromonas sp. RCC299]
gi|226514813|gb|ACO60809.1| predicted protein [Micromonas sp. RCC299]
Length = 394
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 66 SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE--I 123
+++ +HDDIL+ K+ G EI++ VK G++HAK+SPV T +YR++PK+ + +
Sbjct: 227 NEIATVHDDILLCKMVAGQEIELEAHCVKGQGKEHAKWSPVGTTWYRMVPKVEFIDKDYL 286
Query: 124 EGEMA 128
+GE A
Sbjct: 287 DGEDA 291
>gi|440494332|gb|ELQ76725.1| DNA-directed RNA polymerase [Trachipleistophora hominis]
Length = 310
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 27 KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEI 86
+ S+S + DD E ++ I + D ++++ I +LI KL P +
Sbjct: 121 RMCSWSRAVEEDDGLE-------EVDGDGIANALDHTYNANLPMIKPGVLITKLGPNQCL 173
Query: 87 DVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
D M+A + ++HAK+S V +YR+ P +TL + + E A L+ F GVI I +K
Sbjct: 174 DAEMYATRGTAKEHAKYSSVNICYYRMHPILTLNRSFKNEDAHLLKKRFKDGVIGIRRK 232
>gi|255082502|ref|XP_002504237.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
gi|226519505|gb|ACO65495.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
Length = 331
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTM 134
ILI KLR EI++ A K +GRDHAK+ PVATA YR P+IT+ +++ + + +
Sbjct: 170 ILILKLRKNQEINMRCVARKGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEEEKIK 229
Query: 135 F 135
F
Sbjct: 230 F 230
>gi|340058077|emb|CCC52431.1| putative DNA-directed RNA polymerase, alpha subunit [Trypanosoma
vivax Y486]
Length = 389
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Query: 46 VFTKDIQWVPIGSQ---GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ D++W P+ SQ G V +H DI++ +L PG + + A+K IG HAK
Sbjct: 198 VYSGDLKWRPLPSQEPWGTGQSDDRVFLVHPDIVLTRLGPGQRLKLRAIALKGIGAVHAK 257
Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVIS----IEKKPNA 148
++PV+ +Y ++ ++ E + +++L+++ + G + I+++P++
Sbjct: 258 WAPVSACYYEMMTEVDPVDETACDQSKKLKSLDAAGASTSHHGIQERPDS 307
>gi|302754380|ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
gi|300171553|gb|EFJ38153.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
Length = 320
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ +++F L +KCT + +SH + + D Q VP+ S G D+
Sbjct: 98 CDYCSIEFTLSVKCTSEETLDVTSH--------DLQSSDSQVVPVDSIG---HDPDIENF 146
Query: 72 HDD--ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ ILI KLR G E+ + A K I +DHAK+SP AT ++ P I + + +
Sbjct: 147 NQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSPAATVTFQYEPDIHINENL 200
>gi|302803341|ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
gi|300149109|gb|EFJ15766.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
Length = 320
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ +++F L +KCT + +SH + + D Q VP+ S G D+
Sbjct: 98 CDYCSIEFTLSVKCTSEETLDVTSH--------DLQSSDSQVVPVDSIG---HDPDIENF 146
Query: 72 HDD--ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ ILI KLR G E+ + A K I +DHAK+SP AT ++ P I + + +
Sbjct: 147 NQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSPAATVTFQYEPDIHINENL 200
>gi|157868180|ref|XP_001682643.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
gi|68126098|emb|CAJ07151.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
Length = 442
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 46 VFTKDIQWVPI----------------------GSQGDMYKSSD-----VGPIHDDILIA 78
V++ +QWVP+ G+ G S+D V +H DIL+
Sbjct: 218 VYSGQLQWVPLPGQDKTAGAVAVACQAGREECAGAAGATDHSADEDDDAVFLVHPDILLT 277
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPG 138
KL PG I + AVK G HAK+SPV+ +Y + + L + + G A+ L G
Sbjct: 278 KLGPGQRIKLKAIAVKGFGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALIKSCPAG 337
Query: 139 VISIE 143
V E
Sbjct: 338 VFGYE 342
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC++ + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCSEEQT-RHVTTADLKSSNAKV-------LPVTSRNQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC++ + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCSEEQT-RHVTTADLKSSNAKV-------LPVTSRNQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC++ + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCSEEQT-RHVTTADLKSSNAKV-------LPVTSRNQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|342185050|emb|CCC94532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 258
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ D++W P+ SQ ++ S+ V +H DI++ +L PG + + A+K IG HAK
Sbjct: 85 VYSGDLKWRPLRSQEEVAAKSEDNRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGVVHAK 144
Query: 103 FSPVATAFYRL 113
+SPVA FY +
Sbjct: 145 WSPVAACFYEI 155
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCNEEQT-RHVTTADLKSSNAKV-------LPVTSRNQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|388522223|gb|AFK49173.1| unknown [Lotus japonicus]
Length = 237
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L++KC + +S D+Y + D VP+ D SSD +
Sbjct: 18 CEFCSVEFHLRVKCMTDETLDVTSK--DLY------SSDHTVVPVDFSPDT--SSD-SAV 66
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + ++
Sbjct: 67 NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDL 118
>gi|330805244|ref|XP_003290595.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325079268|gb|EGC32876.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 303
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C+Q +++F+L +KC+ +S D+ V + +P+ SQ
Sbjct: 96 ERCDQCSVEFKLNVKCSNQRPIDVTSS--DLI---VVSNNNNSVIPVSSQTTERT----- 145
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
D+I I KLR G E+ + A K +G++HAK+SP A Y+ P +T+ Q E++
Sbjct: 146 ---DEIPIVKLRQGQELRLRAIAKKGVGKEHAKWSPSCIATYQFQPIVTINQNRMDELSD 202
Query: 130 R 130
+
Sbjct: 203 K 203
>gi|328868426|gb|EGG16804.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 296
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L +KC A SS D + VF P+ + ++Y G
Sbjct: 93 ERCTECSVEFNLNVKCLDRALEVTSS--DLQSQNDNVF-------PVSASDNVY-----G 138
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
I I +LR G E+ + A K +G++HAK+ P A Y+ PKI + Q E++
Sbjct: 139 NTSGAIPIVRLRKGQEVKLKAIAKKGVGKEHAKWIPTCIATYQFQPKIVVNQNRFDELSD 198
Query: 130 R 130
R
Sbjct: 199 R 199
>gi|390367669|ref|XP_003731306.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Strongylocentrotus purpuratus]
Length = 262
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C +++ L +KCT + H + D + KV VP+ S+ +SSD G
Sbjct: 79 EFCSDCSVELSLDVKCTDDQT-RHVTSRDLLSSNQKV-------VPVPSRNQ--ESSDYG 128
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ DDILI KLR G E+ + +A K G+DHAK+ P A + P
Sbjct: 129 EV-DDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEYDP 173
>gi|390368205|ref|XP_781436.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1, partial [Strongylocentrotus purpuratus]
Length = 388
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C +++ L +KCT + H + D + KV VP+ S+ +SSD G
Sbjct: 205 EFCSDCSVELSLDVKCTDDQT-RHVTSRDLLSSNQKV-------VPVPSRNQ--ESSDYG 254
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ DDILI KLR G E+ + +A K G+DHAK+ P A + P
Sbjct: 255 EV-DDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEYDP 299
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC++ + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCSEEQT-RHVTTADLKTSNPKV-------LPVTSRNQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 SDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC++ + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCSEEQT-RHVTTADLKSSNAKV-------LPVTSRHQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|357475219|ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
Length = 318
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L++KC + SS D + H V D+ GD SD
Sbjct: 99 CEYCSVEFHLRVKCITDQTLDVSSK-DLISSDHTVTPVDV------PGGDASIESD---- 147
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 148 GRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDL 199
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + + H + AD KV +P+ S+ + ++ G
Sbjct: 94 CPECSVEFTLDVKCNEEQT-RHVTTADLKSSNAKV-------LPVTSRNQGEEDNEYGES 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 TDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189
>gi|154335916|ref|XP_001564194.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061228|emb|CAM38250.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 446
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 28/126 (22%)
Query: 46 VFTKDIQWVP-----------IGSQGDMY---KSSDVGP--------------IHDDILI 77
V++ +QWVP +G+ D + D G +H DIL+
Sbjct: 221 VYSHQLQWVPLPGQEKKGGAKVGAGADAREAERGGDAGAAEFNTDDDDDAVFLVHPDILL 280
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSP 137
KL PG I + AVK G HAK+ PV+ +Y + + L + + G A+ L
Sbjct: 281 TKLGPGQRIKLKAIAVKGFGAVHAKWCPVSACYYEMKTSVELRERLTGSAAEALVKSCPA 340
Query: 138 GVISIE 143
GV E
Sbjct: 341 GVFGYE 346
>gi|302833623|ref|XP_002948375.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
gi|300266595|gb|EFJ50782.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
Length = 272
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 19 FQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIA 78
F L + CT +S+ VP+ + ++ + P I+I
Sbjct: 80 FSLDVTCTVDGVMDVTSN---------------DLVPLNPEHGVFPVNYQNPDEKPIVIC 124
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMF 135
K+R G ++ + A K IG+DHAKF PVATA ++ P+I L+ EM + +F
Sbjct: 125 KMRRGQQLKLVARARKGIGKDHAKFIPVATAVFQYKPRIVLSHSAMAEMTDEEKQIF 181
>gi|66801649|ref|XP_629750.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851108|sp|Q54DH7.1|RPB3_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|60463138|gb|EAL61332.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 302
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+Q +++ +L +KCT++ +S + +++ +P+ SQ S
Sbjct: 98 CDQCSVELRLNVKCTENRPRDVTSS--------DLLSQNSAVIPVSSQVTSSNS------ 143
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
+I I KLR G EI + A K +G++HAK+SP A Y+ P I L Q
Sbjct: 144 EQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQ 193
>gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|12643753|sp|Q39212.2|RPB3B_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-B;
Short=RNA polymerase II subunit 3-B; Short=RNA
polymerase II subunit B3-B; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide B
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|29824193|gb|AAP04057.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|110736768|dbj|BAF00345.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|330251303|gb|AEC06397.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 319
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CE +++F L KC + +S D+Y + D P+ + S
Sbjct: 97 EHCEFCSVEFPLSAKCVTDQTLDVTSR--DLY------SADPTVTPVDFTSNSSTSDSSE 148
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+IAKLR G E+ + A K IG+DHAK+SP AT Y P I + +E+
Sbjct: 149 --HKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEM 200
>gi|145328718|ref|NP_001077894.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|330251304|gb|AEC06398.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 235
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CE +++F L KC + +S D+Y T P+ + S
Sbjct: 97 EHCEFCSVEFPLSAKCVTDQTLDVTSR--DLYSADPTVT------PVDFTSNSSTSDSSE 148
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+IAKLR G E+ + A K IG+DHAK+SP AT Y P I + +E+
Sbjct: 149 --HKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEM 200
>gi|514320|gb|AAB03740.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
Length = 319
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CE +++F L KC + +S D+Y T P+ + S
Sbjct: 97 EHCEFCSVEFPLSAKCVTDQTLDVTSR--DLYSADPTVT------PVDFTSNSSTSDSSE 148
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+IAKLR G E+ + A K IG+DHAK+SP AT Y P I + +E+
Sbjct: 149 --HKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEM 200
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 20/119 (16%)
Query: 6 RLKY-------EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGS 58
RL+Y E C + +++F L ++C + H + D + + D + VP+ +
Sbjct: 81 RLQYSRDCNCVEHCPECSVEFTLDVRCNDDQT-RHVTTRD-------LISSDSRVVPVTT 132
Query: 59 QGDMYKSSDV--GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ Y D G DDILIAKLR G EI + +A K +G +HAK++P A+ + P
Sbjct: 133 R---YGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLGTEHAKWNPTASVAFEYDP 188
>gi|325182041|emb|CCA16494.1| DNAdirected RNA polymerase II 36 kDa polypeptide A putative [Albugo
laibachii Nc14]
Length = 319
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 10 EPCEQDTLQFQLKIKCTKS--ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD 67
E C +++FQL ++ + + S S + D Y I+ V S+ + + D
Sbjct: 96 EHCPNCSVEFQLDVRAEQGMLSVTSDSLKSVDPY---------IRPVNFSSEEEFNNTQD 146
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
G ++IAKL PG I ++ A IG++HAK++PVA A + PKITL Q I
Sbjct: 147 TG-----VIIAKLGPGQHIRLSAIAKLGIGKEHAKWAPVAVATFMYEPKITLNQAI 197
>gi|71749338|ref|XP_828008.1| DNA-directed RNA polymerase subunit alpha [Trypanosoma brucei
TREU927]
gi|70833392|gb|EAN78896.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ ++W PI Q ++ S+ V +H DI++ +L PG + + A+K IG HAK
Sbjct: 149 VYSGHLKWQPIAKQEELAARSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAK 208
Query: 103 FSPVATAFYRL 113
++PVA FY +
Sbjct: 209 WTPVAACFYEM 219
>gi|261333779|emb|CBH16774.1| DNA-directed RNA polymerase, alpha subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ ++W PI Q ++ S+ V +H DI++ +L PG + + A+K IG HAK
Sbjct: 149 VYSGHLKWQPIAKQEELAARSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAK 208
Query: 103 FSPVATAFYRL 113
++PVA FY +
Sbjct: 209 WTPVAACFYEM 219
>gi|88687066|emb|CAJ43894.1| RNA polymerase I subunit RPC40 [Trypanosoma brucei brucei]
Length = 337
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSD---VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
V++ ++W PI Q ++ S+ V +H DI++ +L PG + + A+K IG HAK
Sbjct: 149 VYSGHLKWQPIAKQEELAARSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAK 208
Query: 103 FSPVATAFYRL 113
++PVA FY +
Sbjct: 209 WTPVAACFYEM 219
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex echinatior]
Length = 256
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ +S+ G
Sbjct: 74 CPECSVEFTLDVKCTEEQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 125
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+ILI KLR G E+ + +A K G++HAK++P A + P T+
Sbjct: 126 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNTM 172
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C +++F L +KC++ + H + AD + +V VP+ S+ ++ G
Sbjct: 94 CHDCSVEFNLHVKCSEEMT-RHVTTADLVSNNPRV-------VPVTSRNQDSDINEYGE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + FA K G++HAK++P + P T+
Sbjct: 145 KDDILIIKLRKGQELKIRAFAKKGFGKEHAKWNPTTGVSFEYDPDNTM 192
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + ++F L +KC + + + +S AD + + D + +P+ S+ + G
Sbjct: 94 CRECAVEFTLDVKCHEETTRNVTS-AD-------LKSSDPKVIPVTSRNQEEDGHEYGNE 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+DDILI KLR G E+ V +A K ++HAK++P A + P L
Sbjct: 146 NDDILIVKLRKGQELKVRAYAKKGFAKEHAKWNPTAGVSFEYDPDNAL 193
>gi|225428887|ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGP 70
CE +++F L+ KC + +S + + D VP+ S Y S+D
Sbjct: 99 CEFCSVEFHLRAKCMTDETLDVTSK--------DLISSDHTVVPVDFSDSSGYDSAD--- 147
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + +++
Sbjct: 148 -KKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 199
>gi|147838054|emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGP 70
CE +++F L+ KC + +S + + D VP+ S Y S+D
Sbjct: 99 CEFCSVEFHLRAKCMTDETLDVTSK--------DLISSDHTVVPVDFSDSSGYDSAD--- 147
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + +++
Sbjct: 148 -KKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 199
>gi|255555327|ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 318
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGP 70
C+ +++F L+ KC + +S D+Y + D VP+ S Y SS+
Sbjct: 99 CDYCSVEFHLRAKCITDQTLDVTSK--DLY------SSDHTVVPVDFSDSSGYDSSE--- 147
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 148 -QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDL 199
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT + H + AD + + D + VP+ S+ +D G
Sbjct: 94 CSECSVEFTLDVKCTDDQT-RHVTTAD-------LKSSDPRVVPVTSRHRDEDQADYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 -DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 188
>gi|384245015|gb|EIE18511.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 303
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 17 LQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDIL 76
++ L +KCT + +S+ + H D++ P+G Y P + IL
Sbjct: 100 VEMTLNVKCTSEDTMEVTSNDLQLDANHP----DVR--PVG-----YVPGGYDPENRGIL 148
Query: 77 IAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ K+R E+ + A K IG+DHAK+ PVAT ++ +P+IT+ + +
Sbjct: 149 LVKMRKNQELRLKAIARKGIGKDHAKWIPVATVSFQYMPEITINRAL 195
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT + H + AD + + D + VP+ S+ +D G
Sbjct: 94 CSECSVEFTLDVKCTDEQT-RHVTTAD-------LKSSDPRVVPVTSRHRDEDQADYGEA 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 -DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 188
>gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-A;
Short=RNA polymerase II subunit 3-A; Short=RNA
polymerase II subunit B3-A; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
[Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
Length = 319
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F+L KC + +S D+Y T V + SS+
Sbjct: 99 CEFCSVEFRLSSKCVTDQTLDVTSR--DLYSADPTVTP----VDFTIDSSVSDSSE---- 148
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDM 200
>gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F+L KC + +S D+Y T V + SS+
Sbjct: 99 CEFCSVEFRLSSKCVTDQTLDVTSR--DLYSADPTVTP----VDFTIDSSVSDSSE---- 148
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDM 200
>gi|281211628|gb|EFA85790.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 295
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C+ +++F+L +C S+S + D+ +++ +P+GS SD
Sbjct: 93 ERCDNCSVEFKLNARCN---DHSYSVTSLDL------LSQNDHVIPVGS-------SDGR 136
Query: 70 PIHDDIL-IAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P D ++ I KL G E+ + A K +G++HAK+SP A Y+ PKI + Q E+
Sbjct: 137 P--DTVIPIVKLHRGQEVKLRAIAKKGVGKEHAKWSPACVATYQFQPKIVINQNRMDELT 194
Query: 129 QR 130
R
Sbjct: 195 DR 196
>gi|356521566|ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 319
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L++KC + +S D+Y + P + D +
Sbjct: 100 CEFCSVEFHLRVKCMTDQTLDVTSK--DLYSSDPTVSPVDFSDPSATDSDNNRG------ 151
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + +++
Sbjct: 152 ---IIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
>gi|224105591|ref|XP_002313865.1| predicted protein [Populus trichocarpa]
gi|222850273|gb|EEE87820.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEK-HKVFTKDIQWVPIGSQGDMYKSSDVGP 70
CE +++F L+ KC + +S D+Y H V V D D
Sbjct: 99 CEYCSVEFHLRAKCITDQTLDVTSK--DLYSSDHAVIP-----VDFSDPSDANDPFDHTE 151
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + +++
Sbjct: 152 TQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 204
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT + H + AD + + D + VP+ S+ +D G +
Sbjct: 94 CTECSVEFTLDVKCTGDQT-RHVTTAD-------LKSSDPRVVPVTSRHRDEDQADYGEL 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P + + P
Sbjct: 146 -DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTSGVCFEYDP 188
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ ++S+ G
Sbjct: 94 CPECSVEFTLDVKCTEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDEASEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 188
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT + H + AD + + D + +P S+ +SS+ G
Sbjct: 94 CHECSVEFTLDVKCTDDHT-RHVTTAD-------LKSSDPRVIPATSKHRDDESSEYGDT 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ V +A K G++HAK++P A + P
Sbjct: 146 -DEILIIKLRKGQELKVKAYAKKGFGKEHAKWNPTAGVAFEYDP 188
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
terrestris]
Length = 273
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ +S+ G
Sbjct: 91 CPECSVEFTLDVKCTEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 142
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+ILI KLR G E+ + +A K G++HAK++P A + P ++
Sbjct: 143 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSM 189
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C++ +++F L +KCT + H + AD + + D + +P S+ S+D G
Sbjct: 94 CQECSVEFTLDVKCTDDQT-RHVTTAD-------LKSSDPRVIPAPSKHRDDDSNDYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P + P
Sbjct: 146 -DEILIVKLRKGQELKIRAYAKKGFGKEHAKWNPTCGVAFEYDP 188
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos saltator]
Length = 276
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ +S+ G
Sbjct: 94 CPECSVEFTLDVKCTEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+ILI KLR G E+ + +A K G++HAK++P A + P ++
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSM 192
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
impatiens]
Length = 276
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ +S+ G
Sbjct: 94 CPECSVEFTLDVKCTEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+ILI KLR G E+ + +A K G++HAK++P A + P ++
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSM 192
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ +S+ G
Sbjct: 94 CPECSVEFTLDVKCTEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+ILI KLR G E+ + +A K G++HAK++P A + P ++
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSM 192
>gi|449442251|ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L+ KC HS D+ K +++ D VP+ D ++
Sbjct: 99 CEFCSVEFHLRAKC-------HSDQTLDVTSK-DLYSSDHTVVPVDF-SDSAAATGEALD 149
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 150 TKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDL 201
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT+ + H + AD + D + +P+ S+ +S+ G
Sbjct: 94 CPECSVEFTLDVKCTEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 188
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C +++ L +KC ++ + ++ + + + +P+ S +SD G +
Sbjct: 94 CPMCAIEYTLDVKCNDESTRAVTTR--------DLLSSNQSVIPVTSMVRESDTSDYG-L 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + +A K G++HAK+SP A + P L
Sbjct: 145 TDDILIVKLRKGQELKLKAYATKGFGKEHAKWSPAAGISFEYDPDNAL 192
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KCT + H + AD + + D + +P+ S+ +S+ G
Sbjct: 94 CPECSVEFTLDVKCTDDHT-RHVTTAD-------LKSSDPRVLPVTSRHREDDTSEYGEA 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 188
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + ++ F L +KCT + H + D M +V VP+ S+ ++ D G
Sbjct: 92 EFCPECSVDFMLDVKCTDDQT-RHVTSRDLMTSNPRV-------VPVTSRHRDDEAGDYG 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+DDILI KLR G E+ + + K ++HAK++P A + P T +
Sbjct: 144 D-NDDILIVKLRKGQELKLKAYGRKGFAKEHAKWNPTAGVSFEYDPDNTFRHTV 196
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++CT+ + H + D + + +++ +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCTEDQT-RHVTSRD-------LVSNNLRVIPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|356576253|ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 320
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMY--KSSDVG 69
CE +++F L++KC + +S D+Y P S D ++D
Sbjct: 100 CEFCSVEFHLRVKCMTDQTLDVTSK--DLYSSD----------PTVSPVDFSDPSATDSP 147
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + +++
Sbjct: 148 DNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 201
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
sativa]
Length = 184
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L++KC + SS D + H V D+ GD SD
Sbjct: 94 CEYCSVEFHLRVKCITDQTLDVSSK-DLISSDHTVTPVDV------PGGDASVESD---- 142
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
I+I KLR G E+ + A K IG+DHAK+SP AT +
Sbjct: 143 GRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 182
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + H+V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLVSNHHRV-------IPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C +++F L +KCT A+ H + AD + + DI+ VP+ S+ + D
Sbjct: 94 CTDCSVEFILDVKCTDDAT-RHVTTAD-------LKSADIRCVPVTSK----RRDDTAEY 141
Query: 72 --HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+DILI KLR G E+ +A K G++HAK++P + P
Sbjct: 142 GQEEDILIVKLRKGQEVKAICYARKGFGKEHAKWNPTCGVAFEYDP 187
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Hydra
magnipapillata]
Length = 273
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C++ +++F L +KCT + H + D + E KV +P+ S+ K D G
Sbjct: 92 EFCDECSVKFTLDVKCTGETT-RHVTSRDLISEDPKV-------IPVTSR---IKDDDTG 140
Query: 70 PIH-DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+I+I KLR G E+ + FA K G++HAK++P A + P L
Sbjct: 141 YGETDEIVIVKLRKGQELKLHAFAKKGFGKEHAKWNPTAGVSFEYDPDNAL 191
>gi|301093788|ref|XP_002997739.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
gi|262109988|gb|EEY68040.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
Length = 241
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C +++F L + S S +S A + + I+ V S+ ++ + D G
Sbjct: 96 ENCPNCSVEFTLDVT-ADSGVLSVTSEALKSSDPY------IRPVNFSSEEELNNTQDSG 148
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
++IAKL PG + ++ A IG++HAK+SPVA A Y P ITL Q +
Sbjct: 149 -----VIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATYMYDPIITLNQAV 197
>gi|297832026|ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F+L KC + +S D+Y T + + S D +
Sbjct: 99 CEFCSVEFRLSAKCVTDQTLDVTSR--DLYSADPTVTP-VDFTIDSSASDSSE------- 148
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 149 QKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDM 200
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C+ +++F L +KCT ++ H + D + + + + VP+ S+ S +
Sbjct: 92 EFCDDCSIEFTLDVKCTDDST-RHVTTQD-------LISTNPRCVPVTSRNREDDSREYM 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + FA K ++HAK++P A + P L
Sbjct: 144 E-QDDILIVKLRKGQELKLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNAL 192
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD-V 68
E C +++F L ++C + + H + D + + + Q +P+ S+ +D V
Sbjct: 92 EFCPDCSVEFSLDVRCNEDQT-RHVTSRD-------LISNNSQVIPVTSRRRDNDPNDYV 143
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
P DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 EP--DDILIVKLRKGQELRLRAYATKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + + H + AD + + D + +P+ S+ + ++ G
Sbjct: 94 CNECSVEFTLDVKCNEEHT-RHVTTAD-------LKSSDPRVLPVTSRHRDDEDNEYGEG 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P + P
Sbjct: 146 TDEILIIKLRKGQELKLKAYAKKGFGKEHAKWNPTCGVSFEYDP 189
>gi|290972439|ref|XP_002668960.1| predicted protein [Naegleria gruberi]
gi|284082499|gb|EFC36216.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE+ +++ L +KCT+S H D + + + + P S D
Sbjct: 97 CEKCSVELTLHVKCTES-------HRD--VTSNDLISNNPSCAPCTLSA---TSRDNENE 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
H+ I I KL+ G EI + A K +G+ HAK+SPVA Y ++P I +
Sbjct: 145 HNGITIVKLKRGQEIKLKAIAKKGVGKGHAKWSPVAITTYYIVPDIRI 192
>gi|325958565|ref|YP_004290031.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
gi|325329997|gb|ADZ09059.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
Length = 262
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 60 GDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ + DV P+HD I + KL+ G E+++ A IG +H+K+ P T Y+ PKIT
Sbjct: 106 GDLQSQDPDVVPVHDTIPLLKLKEGQEVELIAVAKLGIGLEHSKWQPTTTCAYKYYPKIT 165
Query: 119 L 119
+
Sbjct: 166 I 166
>gi|348687896|gb|EGZ27710.1| hypothetical protein PHYSODRAFT_554134 [Phytophthora sojae]
Length = 242
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 51 IQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAF 110
I+ V S+ ++ + D G ++IAKL PG + ++ A IG++HAK+SPVA A
Sbjct: 130 IRPVNFSSEEELNNTQDSG-----VIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVAT 184
Query: 111 YRLLPKITLTQEI 123
Y P ITL Q +
Sbjct: 185 YMYDPIITLNQAV 197
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + ++F L +KC+ + H + AD + +V VP+ S+ +++ G
Sbjct: 94 CPECCVEFTLDVKCSDETT-RHVTTADLKSSEQRV-------VPVTSKHRDDDANEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D+ILI KLR G E+ + +A K G++HAK++P A + P ++
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNSM 192
>gi|388505946|gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L++K + SS D + H V D+ GD SD
Sbjct: 99 CEYCSVEFHLRVKRITDQTLDVSSK-DLISSDHTVTPVDV------PGGDASIESD---- 147
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 148 GRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDL 199
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + + +++ +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRD-------LVSNNLRVIPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 71 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNTPRV-------IPVTSRSRDNDPNDYVE- 121
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + +A K IG++HAK++P A + P L
Sbjct: 122 QDDILIVKLRKGQELRLRAYAKKGIGKEHAKWNPTAGVAFEYDPDNAL 169
>gi|357154558|ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Brachypodium distachyon]
Length = 330
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWV---PIGSQGDMYKSSDV 68
CE +++F L + T + + D KV D IG+ D Y +S
Sbjct: 103 CEHCSVEFHLAARATDANKTLEVTSNDLRSTDPKVCPVDQAMAYQQAIGT-ADPYDTSTA 161
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H ILI KLR G E+ + A K I +DHAK+SP AT + P I + +E+
Sbjct: 162 SD-HRGILIVKLRRGQELRLRAIARKGIAKDHAKWSPAATVTFMYEPDIRINEEL 215
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNTPRV-------IPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + +A K IG++HAK++P A + P L
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGIGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
Length = 262
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
+V P++D+I I +L G ++ + A G++HAKF PV+ +Y+++P+I +T++
Sbjct: 115 EVKPVYDNIPIVELYEGQQLMLEAVARLGTGKEHAKFQPVSICYYKIIPRIEITED 170
>gi|66362260|ref|XP_628094.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
Length = 355
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + ++++ L + C A+ + +H Y+ V T + +P+ + D V
Sbjct: 94 ERCNKCSVEYLLDVTCEGGAT-RNVTH----YDIQPVATSTLVPMPVPKKDD-----SVD 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
+++ ILIAKL PG I + M A K IG+ HAK+ PV+ A +
Sbjct: 144 GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATF 185
>gi|323508505|dbj|BAJ77146.1| cgd1_2710 [Cryptosporidium parvum]
Length = 252
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + ++++ L + C A+ + +H Y+ V T + +P+ + D V
Sbjct: 94 ERCNKCSVEYLLDVTCEGGAT-RNVTH----YDIQPVATSTLVPMPVPKKDD-----SVD 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
+++ ILIAKL PG I + M A K IG+ HAK+ PV+ A +
Sbjct: 144 GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATF 185
>gi|67624207|ref|XP_668386.1| conjugation stage-specific protein [Cryptosporidium hominis TU502]
gi|54659581|gb|EAL38151.1| conjugation stage-specific protein [Cryptosporidium hominis]
Length = 355
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + ++++ L + C A+ + +H Y+ V T + +P+ + D V
Sbjct: 94 ERCNKCSVEYLLDVTCEGGAT-RNVTH----YDIQPVATSTLVPMPVPKKDD-----SVD 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
+++ ILIAKL PG I + M A K IG+ HAK+ PV+ A +
Sbjct: 144 GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATF 185
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + H + AD + + D + +P+ S+ + ++ G
Sbjct: 94 CTECSVEFTLDVKCNDEHT-RHVTTAD-------LKSSDPRVLPVTSRHRDDEDNEYGEG 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P + P
Sbjct: 146 TDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTCGVCFEYDP 189
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus floridanus]
Length = 276
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + + H + AD + D + +P+ S+ +S+ G
Sbjct: 94 CPECSVEFTLDVKCIEDQT-RHVTTAD-------FKSSDPRVLPVTSRHREDDASEYGET 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P A + P
Sbjct: 146 -DEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 188
>gi|408381888|ref|ZP_11179435.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
gi|407815336|gb|EKF85921.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
Length = 266
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 60 GDM-YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ + S++ P+ D I + KL+ G E+++ A +G DHAK+ P T+ Y+ P+IT
Sbjct: 106 GDLKSEDSNIKPVLDTIPLVKLKEGEEVELEAIAQLGLGSDHAKWQPTTTSAYKHYPEIT 165
Query: 119 LTQE 122
+ Q+
Sbjct: 166 IDQD 169
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 19/113 (16%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDI-----QWVPIGSQGDMYKSS 66
C+ +++F L +KCT + +V T+D+ + VPI S+ S
Sbjct: 94 CQDCSVEFYLDVKCTGEGT-------------RQVTTRDLISMNPKVVPITSRSRGDSSK 140
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G DDILIAKLR G + FA K G++HAK+ V+ + P L
Sbjct: 141 SFGE-QDDILIAKLRKGQSLKFKAFAKKGFGKEHAKWQCVSAVAFEYDPDNAL 192
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C +++F L +KC + + H + AD + + D + +P+ S+ + ++ G
Sbjct: 94 CNDCSVEFTLDVKCNEEHT-RHVTTAD-------LKSSDPRVLPVTSRHRDDEDNEYGEG 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D+ILI KLR G E+ + +A K G++HAK++P + P
Sbjct: 146 TDEILIIKLRKGQELKLKAYAKKGFGKEHAKWNPTCGVSFEYDP 189
>gi|452821367|gb|EME28398.1| DNA-directed RNA polymerase II subunit C [Galdieria sulphuraria]
Length = 257
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C ++ F+L ++CT+ A S + +Q V + + S + G
Sbjct: 94 CLHCSVTFELDVQCTEEAMTVTSQDLVNKSAHESQLAASVQPVHFSGEYNPTLSEENGL- 152
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT----QEIEGEM 127
+ I++AKL G I +T A K +G++HAK+SPV T Y+ P + + E
Sbjct: 153 -NGIVLAKLAKGQRIQLTAIAKKGVGKEHAKWSPVCTISYQTDPSVQFNLNKLNTLLSEE 211
Query: 128 AQRLQTMFSPGVISIEKKPN 147
A+R S ++I+ K N
Sbjct: 212 AKRALVKSSDECLAIDPKSN 231
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 93 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DDILI KLR G E+ + +A K G++HAK++P A + P+ + E E +
Sbjct: 145 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPEYSELDEDESQ 200
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ SD
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPSDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|145342475|ref|XP_001416207.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
gi|144576432|gb|ABO94500.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
Length = 318
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQT 133
ILIAKLR ++ + A K G+DHAK+SPVATA ++ P I + + + + QT
Sbjct: 145 ILIAKLRKNQQLSLKCIARKGTGKDHAKWSPVATAVFKYTPLIDINHGLLNSLNGKSQT 203
>gi|115477954|ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|215692481|dbj|BAG87901.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
ILI KLR G E+ + A K IG+DHAK+SP AT + P+I + +E+
Sbjct: 167 ILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINEEL 215
>gi|432098388|gb|ELK28188.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 303
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 120 ELCPECSVEFTLDVRCNEDQT-RHITSRDLISNSPRV-------IPVTSRNRDNDPNDYV 171
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 172 D-QDDILIVKLRKGQELRLRAYAEKGFGKEHAKWNPTAGVAFEYDPNNALRHTV 224
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ SD
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNTPRV-------IPVTSRSRDNDPSDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|340976001|gb|EGS23116.1| RNA polymerase II subunit 3-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 344
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CEQ +++ L KCT E VF++D+ VP+G + + + PI
Sbjct: 103 CEQCSVRLSLHAKCTGD-------------ENMHVFSRDL--VPVGERVNQNLGT---PI 144
Query: 72 HDDI-----LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+D LI KLRPG EI + A K I ++HAK++P A + P L
Sbjct: 145 INDPDGLGPLILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFEYDPHNKL 197
>gi|297832024|ref|XP_002883894.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329734|gb|EFH60153.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F L KC + +S D+Y T P+ D S+
Sbjct: 99 CEFCSVEFPLSAKCVTDQTLDVTSR--DLYSADPTVT------PVDFTID--SSASDSSE 148
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 149 QKGITIVKLRRGQELKLKAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDL 200
>gi|221486200|gb|EEE24470.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii GT1]
Length = 484
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
D I I KLR +++ M A K IG+ HAK+SPVATA Y+ P+I +++
Sbjct: 298 DGIPIVKLRKNQSVNMRMTATKGIGKVHAKWSPVATASYKFEPEIAFEEDL 348
>gi|237834427|ref|XP_002366511.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211964175|gb|EEA99370.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221501508|gb|EEE27282.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii VEG]
Length = 484
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
D I I KLR +++ M A K IG+ HAK+SPVATA Y+ P+I +++
Sbjct: 298 DGIPIVKLRKNQSVNMRMTATKGIGKVHAKWSPVATASYKFEPEIAFEEDL 348
>gi|326927174|ref|XP_003209769.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Meleagris gallopavo]
Length = 549
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S +S D
Sbjct: 366 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNNPRV-------IPVTS-----RSRDND 412
Query: 70 PI----HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P DDILI KLR G E+ + +A K G++HAK++P A + P L
Sbjct: 413 PNDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 466
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CEQ +++ L + CT A H + AD + +D+Q VP D +SS VG
Sbjct: 92 EFCEQCSVELTLDVCCTTDAP-RHVTGADLISSN-----RDVQPVP---SRDADESSYVG 142
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ ILI K+R G + + A K G++HAK++P A + P L
Sbjct: 143 --QESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL 190
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CEQ +++ L + CT A H + AD + +D+Q VP D +SS VG
Sbjct: 92 EFCEQCSVELTLDVCCTTDAP-RHVTGADLISSN-----RDVQPVP---SRDADESSYVG 142
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ ILI K+R G + + A K G++HAK++P A + P L
Sbjct: 143 --QESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL 190
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNNPRV-------IPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|242048618|ref|XP_002462055.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
gi|241925432|gb|EER98576.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
Length = 328
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
ILI KLR G E+ + A K IG+DHAK+SP AT + P I + +E+
Sbjct: 166 ILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEEL 214
>gi|401404694|ref|XP_003881797.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
gi|325116211|emb|CBZ51764.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
Length = 514
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
D I I KLR +++ M A+K +G+ HAK+SPVATA Y+ P+I+ ++
Sbjct: 311 DGIPIVKLRRNQSVNMRMTAIKGMGKLHAKWSPVATASYKFEPEISFEED 360
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 524 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 575
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 576 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 628
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Anolis
carolinensis]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNNPRV-------IPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|410983639|ref|XP_003998146.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3, partial
[Felis catus]
Length = 260
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 77 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 128
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 129 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 181
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Callithrix
jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|226529628|ref|NP_001149261.1| LOC100282883 [Zea mays]
gi|195625852|gb|ACG34756.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA polymerase II polypeptide A [Zea mays]
Length = 328
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
ILI KLR G E+ + A K IG+DHAK+SP AT + P I + +E+
Sbjct: 166 ILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEEL 214
>gi|449268851|gb|EMC79688.1| DNA-directed RNA polymerase II subunit RPB3, partial [Columba
livia]
Length = 248
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 65 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNNPRV-------IPVTSRSRDNDPNDYV 116
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 117 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 169
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNNPRV-------IPVTSRSRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Cavia
porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + +A K G++HAK++P A + P L
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNAL 192
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 91 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 142
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 143 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 195
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV-E 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 D-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|294464103|gb|ADE77570.1| unknown [Picea sitchensis]
Length = 330
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSH---ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
C +++F+L +KC + +S + DM E V V + +++ +S+
Sbjct: 104 CHYCSVEFKLNVKCDGDQTLDVTSLDLVSSDMRENPVV------AVDRAADMNVFDASE- 156
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P I + + +
Sbjct: 157 ---QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINENL 208
>gi|449018304|dbj|BAM81706.1| RNA polymerase II third large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 533
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE+ ++++ L + C D E+ V ++ +Q P G Y + V PI
Sbjct: 128 CEKCSVEYILDVTCP----------PDGELEEMNVTSRHLQMDPRYFDGPAYVRAVV-PI 176
Query: 72 HD--------------------DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
H I+I KLR G + V A K GR+HAK+SPVA A Y
Sbjct: 177 HRPDQPWELAPDSSRDRTSADAGIVICKLRRGQRLYVRCIAKKGTGREHAKWSPVAAASY 236
Query: 112 RLLPKITL 119
R+ P + L
Sbjct: 237 RMDPSVRL 244
>gi|414588990|tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
ILI KLR G E+ + A K IG+DHAK+SP AT + P I + +E+
Sbjct: 166 ILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEEL 214
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVEFTLDVRCNEDQT-RHVTSRDLIPNSPRV-------IPVTSRNRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + H + D + +V +P+ S+ +D
Sbjct: 94 CSECSVELTLDVRCTEDQT-RHVTSRDLLSNNPRV-------IPVTSRSRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILVVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVELTLDVRCTEDQT-RHVTSRDLLSNNPRV-------IPVTSRSRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILVVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNVLRHTV 196
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVA 107
DDILI KLR G E+ + +A K G++HAK++P A
Sbjct: 145 QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
Length = 261
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 6 RLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMY-K 64
R+ P + D +F + KC + F +++ + GD+ +
Sbjct: 61 RIGLIPIKTDLERFNMPDKCVCGGEGCPNCQVS--------FRLNVEGPKVVYSGDLISE 112
Query: 65 SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
++ P++D+I I +L G ++ + A G++HAK+ PV+ +Y+++P+I +
Sbjct: 113 DPEIKPVYDNIPIVELYEGQQLMIEAVARLGTGKEHAKYQPVSACYYKIIPEIIV 167
>gi|298705011|emb|CBJ28486.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 262
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTM 134
I+IAKL G + +T A K I ++HAK+SPVA A Y+ P I + +E E + +
Sbjct: 157 IIIAKLAKGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAE 216
Query: 135 F 135
F
Sbjct: 217 F 217
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + +S D+ H + +P+ S KS D P
Sbjct: 94 CPECSVELTLDVRCTEDQTRHVTSR--DLLSNHP------RVIPVTS-----KSRDNDPN 140
Query: 72 ----HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 141 DYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|308800116|ref|XP_003074839.1| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
gi|119358805|emb|CAL52099.2| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
Length = 301
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 17 LQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDIL 76
+ +L ++C + +S +DM + D + PI QG + ++ G I L
Sbjct: 99 VHLELNVRCLTEQAMDVTS--EDM------VSYDERVKPITFQGTVSDAAKPGGI----L 146
Query: 77 IAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I KLR ++ + A K G+DHAK+SPVATA ++ P + + QE+
Sbjct: 147 IVKLRNKQQLLLKCIARKGTGKDHAKWSPVATAVFKHDPVVHVNQEL 193
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVELTLDVRCTEDQT-RHVTSRDLLSNNPRV-------IPVTSRSRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + +S D+ H + +P+ S KS D P
Sbjct: 94 CPECSVELTLDVRCTEDQTRHVTSR--DLLSNHP------RVIPVTS-----KSRDNDPN 140
Query: 72 ----HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 141 DYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVELTLDVRCTEDQT-RHVTSRDLLSNNPRV-------IPVTSRSRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|209881574|ref|XP_002142225.1| DNA-directed RNA polymerase II subunit RPB3 [Cryptosporidium muris
RN66]
gi|209557831|gb|EEA07876.1| DNA-directed RNA polymerase II subunit RPB3, putative
[Cryptosporidium muris RN66]
Length = 348
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV- 68
E C + ++ + L +KC + + + +H D +Y T + +P+ + + DV
Sbjct: 93 ERCNKCSVDYTLDLKC-EGPTVRNVTHLD-IYS-----TLPVPNIPL----PVPRKEDVT 141
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
P ++ ILIAKL PG + M A K IG+ HAK+ PVATA + I + Q
Sbjct: 142 DPNNEGILIAKLGPGQSLTARMTATKGIGKFHAKWIPVATATFTNEADIRINQ 194
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C ++ L +KCT + H + D + +V VP+ S+ +++ G
Sbjct: 92 EFCADCAIELTLDVKCTDDQT-RHVTTRDLISSNPRV-------VPVTSRRAEDETAGYG 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DDILI KLR G E+ + FA K ++HAK++P A + P L
Sbjct: 144 EA-DDILIVKLRKGQELKLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNAL 192
>gi|159489602|ref|XP_001702786.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158280808|gb|EDP06565.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 275
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
I+I KLR G + + A K IG+DHAKF PVATA ++ +ITL+ +M
Sbjct: 145 IVICKLRRGQHLKLVARARKGIGKDHAKFIPVATAVFQYKAQITLSASAMADM 197
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C++ +++ L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CQECSVELTLDVRCNEDQT-RHVTSRDLLSNNPRV-------IPVTSRSRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|307108317|gb|EFN56557.1| hypothetical protein CHLNCDRAFT_144215 [Chlorella variabilis]
Length = 283
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
IL+ K+R E+ + A K G+DHAK+ PVAT Y+ +P+IT+ +
Sbjct: 117 ILLVKMRRNQELKLRAVARKGTGKDHAKWMPVATCVYQFMPEITINHAL 165
>gi|296090458|emb|CBI40277.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
I+I KLR G E+ + A K IG+DHAK+SP AT + P+I + +++
Sbjct: 39 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 87
>gi|193875760|gb|ACF24516.1| DNA-directed RNA polymerase I [Gymnochlora stellata]
Length = 230
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 41 YEKHKVFTKDIQWVPIGS----QGDMY---KSSDV----GPIHDDILIAKLRPGHEIDVT 89
Y VF ++W GS Q + + K S + P H D+++ KL+P ++ +
Sbjct: 36 YYNKNVFAHKLKWNRFGSRIPFQSNTFFKKKQSSIDLCFKPSHQDVILTKLKPLQKLFIE 95
Query: 90 MFAVKSIGRDHAKFSPVATAFYRLL 114
A KSIG H+K+SPV+ A++ L
Sbjct: 96 CHAKKSIGLVHSKYSPVSVAWFSLF 120
>gi|345328382|ref|XP_001511558.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ornithorhynchus anatinus]
Length = 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 53 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRSRDNDPNDYVE- 103
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++H K++P A + P L +
Sbjct: 104 QDDILIVKLRKGQELRLRAYAKKGFGKEHTKWNPTAGVAFEYDPDNALRHTV 155
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS-DVGP--- 70
D +QF +CT+ F A +M + + + I+ V + D+ S+ DV P
Sbjct: 80 DQMQFSRDCQCTEFCQFC----AVEMRLRVRCDDEGIRAV---TTADLETSNPDVAPACG 132
Query: 71 IH-----------DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+H DDILI KLR G +ID+ A K G++HAK++P + P L
Sbjct: 133 VHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWNPTCCVAFEYDPDNAL 192
Query: 120 TQEI 123
+
Sbjct: 193 RHTV 196
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus mordax]
Length = 275
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L ++CT+ + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVELTLDVRCTEDQT-RHVTSRDLLSNNPRV-------IPVTSRSRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDI++ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 145 QDDIILVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|347523607|ref|YP_004781177.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343460489|gb|AEM38925.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 293
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 60 GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPK- 116
GD+ +SSD V P++ +I I + PG + V +A G++HAK+ PV+ A +R LP
Sbjct: 117 GDL-QSSDPTVKPVYPNIPIVLMAPGQRLHVRAYARLGYGKEHAKWFPVSVAAHRYLPVL 175
Query: 117 ------------ITLTQEIEGEMAQRLQTMFSPGVISI 142
I +E E+A++L+ M G I I
Sbjct: 176 EFDPKHEKANDCIECIEEFAPEVAEKLRNMKEKGRIEI 213
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS--- 66
E C++ ++ F L+ KCT A+ + V T D++ P+G + + +
Sbjct: 91 EFCDECSIPFILQTKCTDEATLA-------------VTTADLR--PLGVETTVRPACGEA 135
Query: 67 --DVGPIHDD------ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
+ G + D+ ILI KLR G E+++ +A K G++HAK++P + P
Sbjct: 136 LRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNA 195
Query: 119 LTQEI 123
L I
Sbjct: 196 LRHTI 200
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative [Brugia
malayi]
Length = 275
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS-DVGP--- 70
D +QF +CT+ F A +M + + + I+ V + D+ S+ DV P
Sbjct: 80 DQMQFSRDCQCTEFCQFC----AVEMRLRVRCDDEGIRAV---TTADLETSNPDVAPACG 132
Query: 71 IH-----------DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+H DDILI KLR G +ID+ A K G++HAK++P + P L
Sbjct: 133 VHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWNPTCCVAFEYDPDNAL 192
>gi|304314287|ref|YP_003849434.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
gi|302587746|gb|ADL58121.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
Length = 264
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 68 VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
V P++ DI + KL E+++ A +GRDHAK+ P Y+ P IT T+E +
Sbjct: 118 VEPVYPDIPLVKLGDEDEVELEAVAQLGVGRDHAKWEPTTACAYKYYPMITFTEECD 174
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CEQ +++ L + CT A H + AD + +D+Q VP D ++ VG
Sbjct: 92 EFCEQCSVELTLDVCCTTDAP-RHVTGADLLSS-----NRDVQPVPSRDPDD---AAYVG 142
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ ILI K+R G + + A K G++HAK++P A + P L
Sbjct: 143 --QESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTAGVGFEYDPDNAL 190
>gi|395645094|ref|ZP_10432954.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
gi|395441834|gb|EJG06591.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
Length = 274
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 47 FTKDIQWVPIGSQGDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
FT ++ I GD+ + P+HDDI I KL G ++ + AV + G +HAK+
Sbjct: 94 FTMSVEGPGIVYSGDLISDDPETRPVHDDIPIVKLFEGQKVVLEARAVLNTGTEHAKWQA 153
Query: 106 VATAFYRLLPKITLTQEIE 124
V Y+ P IT+T+ +
Sbjct: 154 VTACGYKTYPVITITENCD 172
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C +++F L +KC++ + + + AD + + D + VP S+ D D
Sbjct: 94 CVDCSVEFTLDVKCSEDVT-RNVTTAD-------LKSTDPRVVPATSKRDEEPPDDND-- 143
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
++ILI KLR G E+ + +A K G++HAK++P A + P +L
Sbjct: 144 -NEILIVKLRKGQELKMRAYAKKGFGKEHAKWNPTAGVAFEYDPDNSL 190
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L +CT+ + +S D+ H + +P+ S KS D P
Sbjct: 94 CPECSVELTLDARCTEDQTRHVTSR--DLLSNHP------RVIPVTS-----KSRDNDPN 140
Query: 72 ----HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDIL+ KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 141 DYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNALRHTV 196
>gi|168029877|ref|XP_001767451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681347|gb|EDQ67775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ T++F L +K T+ D+ ++ + D VP+ + D+ K +
Sbjct: 115 CQNCTVEFLLSVKATED-------RIKDVTQRDLKSSNDAV-VPV--EIDVDKQGVLEEC 164
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
DI IAKL G EI + A K +G HAK+SPVAT + P+I + +E
Sbjct: 165 KMDICIAKLYKGQEITLRALAKKGMGSLHAKWSPVATVTFHHEPEIYINEE 215
>gi|367035840|ref|XP_003667202.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
gi|347014475|gb|AEO61957.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
Length = 337
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 23/113 (20%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++ L KCT E VF +D+ VP G + + + PI
Sbjct: 102 CEHCSVRLTLHAKCTGE-------------ENMHVFARDL--VPTGDRINQVLGT---PI 143
Query: 72 HDDI-----LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+D LI KLRPG EI + A K I ++HAK++P A + P L
Sbjct: 144 VNDAEGLGPLILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFEYDPHNKL 196
>gi|320586301|gb|EFW98980.1| RNA polymerase 2 subunit 3 [Grosmannia clavigera kw1407]
Length = 362
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 29/112 (25%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDI--------QWVPIGSQGDMY 63
CE +++ +L+ KCT E KV+ +D+ QWV D
Sbjct: 102 CELCSIKLRLQAKCTSD-------------EVMKVYARDLVVDPARPNQWVGTPVIRD-- 146
Query: 64 KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P ++IAKLR G E+++T A K I ++HAK+SP A + P
Sbjct: 147 ------PDGLGVMIAKLRRGQELNMTCIAKKGIAKEHAKWSPTAAVGFEYDP 192
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F + +KC + H + AD + + D + VP+ S+ +++ G
Sbjct: 94 CTECSVEFTIDVKCLDEQT-RHVTTAD-------LKSSDPRVVPVTSRH-KDDTNEYGET 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
DDILI KLR G E+ +A K G++HAK++P + P
Sbjct: 145 -DDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 187
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSS-DVGP--- 70
D +QF +CT+ F A +M + + + I+ V + D+ S+ DV P
Sbjct: 80 DQMQFSRDCQCTEFCQFC----AVEMRLRVRCDDEGIRAV---TTADLETSNPDVAPACG 132
Query: 71 IH-----------DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+H DDILI KLR G ++D+ A K G++HAK++P + P L
Sbjct: 133 VHIRNRNAEESASDDILIVKLRKGQDVDIKCIAKKGFGKEHAKWNPTCCVSFEYDPDNAL 192
Query: 120 TQEI 123
+
Sbjct: 193 RHTV 196
>gi|333987645|ref|YP_004520252.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
gi|333825789|gb|AEG18451.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
Length = 278
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
P +D I I KL+ G E+++ A IG +HAK+ P Y+ PKIT+ E
Sbjct: 130 PTYDTIPIMKLKDGEEVELEAIAQLGIGLEHAKWQPTTACAYKYYPKITIDAE 182
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
DDILI KLR G E+ + + K G++HAK++P A + P
Sbjct: 145 QDDILIVKLRKGQELRLRAYVKKRSGKEHAKWNPTAGVAFEYDP 188
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWV-PIGSQGDMYKSSDV 68
E C++ ++ F L++KC A+ + ++ +H + KD V P + + S
Sbjct: 92 EFCDECSIPFILQMKCKDEATLAVTT-------EHLIPLKDDTTVRPACGKALRERGSAR 144
Query: 69 GPIHD--DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H+ +ILI KLR G E+++ +A K G++HAK++P + P L I
Sbjct: 145 EEFHNREEILIVKLRKGQELNLKAYAKKGFGKEHAKWNPTTGVAFEYDPDNALRHTI 201
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + H + AD + + D + VP+ S+ +++ G
Sbjct: 94 CTECSVEFTLDVKCLDEQT-RHVTTAD-------LKSSDPRVVPVTSRHKD-DTNEYGET 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+DILI KLR G E+ +A K G++HAK++P + P
Sbjct: 145 -EDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 187
>gi|387592898|gb|EIJ87922.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
Length = 297
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
I +++I +L PG +I+ +FA+ GR+H+K+ P + +YR + K+ + + A
Sbjct: 157 AAIKQNVIITRLVPGKKIECRLFAIIGTGREHSKWMPTSVCYYRTIKKLEMK---DPSKA 213
Query: 129 QRLQTMFSPG 138
+Q F G
Sbjct: 214 AEIQKYFRDG 223
>gi|84489668|ref|YP_447900.1| DNA-directed RNA polymerase subunit D [Methanosphaera stadtmanae
DSM 3091]
gi|121731854|sp|Q2NFZ6.1|RPOD_METST RecName: Full=DNA-directed RNA polymerase subunit D
gi|84372987|gb|ABC57257.1| RpoD [Methanosphaera stadtmanae DSM 3091]
Length = 270
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 64 KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
KS D V P++D I I +LR G E+++ A +G +HAK+ T Y+ PKI +
Sbjct: 114 KSDDPAVKPVYDTIPIVRLREGEEVELEAIAELGLGSEHAKWQATTTCGYKYYPKIEIDT 173
Query: 122 EIEGEMAQRLQ 132
E ++ + ++
Sbjct: 174 EKVNDLEEYVE 184
>gi|387595515|gb|EIJ93139.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 297
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
I +++I +L PG +I+ +FA+ GR+H+K+ P + +YR + K+ + + A
Sbjct: 157 AAIKQNVIITRLVPGKKIECRLFAIIGTGREHSKWMPTSVCYYRTIKKLEMK---DPSKA 213
Query: 129 QRLQTMFSPG 138
+Q F G
Sbjct: 214 AEIQKYFRDG 223
>gi|223998876|ref|XP_002289111.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
gi|220976219|gb|EED94547.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 72 HDD-ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
HD+ I I KL PG + + A I ++HAK+ PVA A YR P IT+ +E
Sbjct: 145 HDEGISIVKLGPGQHLKLKAIARMGISKEHAKWCPVAVATYRFWPIITINEE 196
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + H + AD + + D + VP+ S+ +++ G
Sbjct: 94 CTECSVEFTLDVKCLDEQT-RHVTTAD-------LKSSDPRVVPVTSRH-KDDTNEYGET 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+DILI KLR G E+ +A K G++HAK++P + P
Sbjct: 145 -EDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 187
>gi|403157658|ref|XP_003307056.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163504|gb|EFP74050.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 365
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 12 CEQDTLQFQLKIKCTKSAS-FSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGP 70
C+ +++ L KCT + +SH D+ V T G G Y+ + G
Sbjct: 107 CDDCSIELVLSTKCTLVGDVLAVNSH--DL-----VITPREDGAHRGDVGKPYQFTMPGG 159
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ + A+K IG++HAK+SPV+T + P
Sbjct: 160 EQPGVLITKLRKGQEVRLKCRAIKGIGQEHAKWSPVSTIGFEYDP 204
>gi|222445013|ref|ZP_03607528.1| hypothetical protein METSMIALI_00629 [Methanobrevibacter smithii
DSM 2375]
gi|222434578|gb|EEE41743.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 274
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 37 ADDMYEKHK--VFTKDIQWVPIGSQGDMYKS-SDVGPIHDDILIAKLRPGHEIDVTMFAV 93
DD YE++ +F+ + + D+ S S + P++D I + KL+ G ++++ A
Sbjct: 81 GDDDYEENNSVMFSLKEEGPKVVYSKDLISSDSKIKPVYDTIPLVKLKEGEKLNIEAVAK 140
Query: 94 KSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
G++HAK+ P Y+ P+IT +++
Sbjct: 141 VGYGKEHAKWMPTTVCVYKQYPEITFNEDV 170
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L +KC + H + AD + + D + VP+ S+ +++ G
Sbjct: 144 CTECSVEFTLDVKCLDEQT-RHVTTAD-------LKSSDPRVVPVTSRH-KDDTNEYGET 194
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+DILI KLR G E+ +A K G++HAK++P + P
Sbjct: 195 -EDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 237
>gi|148643488|ref|YP_001274001.1| DNA-directed RNA polymerase subunit D [Methanobrevibacter smithii
ATCC 35061]
gi|261350417|ref|ZP_05975834.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|166229318|sp|A5UN55.1|RPOD_METS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|148552505|gb|ABQ87633.1| DNA-directed RNA polymerase, subunit D, RpoD [Methanobrevibacter
smithii ATCC 35061]
gi|288861200|gb|EFC93498.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 274
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 37 ADDMYEKHK--VFTKDIQWVPIGSQGDMYKS-SDVGPIHDDILIAKLRPGHEIDVTMFAV 93
DD YE++ +F+ + + D+ S S + P++D I + KL+ G ++++ A
Sbjct: 81 GDDDYEENNSVMFSLKEEGPKVVYSKDLISSDSKIKPVYDTIPLVKLKEGEKLNIEAVAK 140
Query: 94 KSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
G++HAK+ P Y+ P+IT +++
Sbjct: 141 VGYGKEHAKWMPTTVCVYKQYPEITFNEDV 170
>gi|327400272|ref|YP_004341111.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
gi|327315780|gb|AEA46396.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
Length = 261
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
P++D+I + +L G ++ + A G++H+K+ PV+ Y+++P+I ++ E G
Sbjct: 118 PVYDNIPVVELYKGQQLMIEAVARLGTGKEHSKYQPVSICAYKVIPRIEISGECNG 173
>gi|367055384|ref|XP_003658070.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
gi|347005336|gb|AEO71734.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
Length = 337
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 27/111 (24%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGD-------MYK 64
CE ++ L KCT E VF +D+ VP G + + +
Sbjct: 101 CENCSVTLTLHAKCTGE-------------ENMHVFARDL--VPTGERINQVIGTPVLSD 145
Query: 65 SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ +GP LI KLRPG EI + A K I ++HAK++P A + P
Sbjct: 146 AEGLGP-----LILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFEYDP 191
>gi|378754855|gb|EHY64883.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Nematocida sp.
1 ERTm2]
Length = 271
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ +++I +L PG I+ M AV GR+HAK+ P + +YR + K+ +
Sbjct: 133 LKQNVIITRLAPGKRIECKMLAVVGTGREHAKWMPTSVCYYRSIKKLEM 181
>gi|170291194|ref|YP_001738010.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175274|gb|ACB08327.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 251
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 64 KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
KSSD + P +D I I K+R G ++ A G+DH+K+SP A Y +P L
Sbjct: 103 KSSDPLIYPANDKIPIIKMRKGQKLRFQAIARIGRGKDHSKWSPAAAVGYSYMPIYELKD 162
Query: 122 EIEGEMAQRLQTMFSPGVIS 141
+E +++Q + S G IS
Sbjct: 163 PVECDLSQCSNCIESDGGIS 182
>gi|219121575|ref|XP_002181139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407125|gb|EEC47062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 320
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 9 YEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKD-------IQWVPIGSQGD 61
YE C + +++F+L I + +D+ V +KD +Q SQ +
Sbjct: 99 YEHCMRCSVEFELDITYKVTGE-------EDVLAPLTVTSKDLVSNNELVQPAHFLSQDE 151
Query: 62 MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
++ D G + I KL PG + + A I ++HAK+ PVA A YR P+I +
Sbjct: 152 QDEAQDEG-----VAIVKLGPGQRLKLKAIARMGISKEHAKWCPVAVATYRFWPEIHIND 206
Query: 122 E 122
E
Sbjct: 207 E 207
>gi|397615411|gb|EJK63419.1| hypothetical protein THAOC_15929 [Thalassiosira oceanica]
Length = 323
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 9 YEPCEQDTLQFQLKIKCTKSASFSHSSHADDM---YEKHKVFTKDIQWVPIGSQGDMYKS 65
Y+ C + +++F L + K + S D+ + ++Q P
Sbjct: 99 YDRCPRCSVEFDLDVNFDK-VNMSRPEQERDLPLTVTSRDLIANNVQVSP----AHFLNE 153
Query: 66 SDVGPIHDD-ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
+ HD+ I I KL G + + A I ++HAK+ PVA A YR P+IT+ QE
Sbjct: 154 EEQDNAHDEGISIVKLGQGQHLRLKAIARMGISKEHAKWCPVAVATYRFWPEITINQE 211
>gi|116205067|ref|XP_001228344.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
gi|88176545|gb|EAQ84013.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
Length = 338
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++ L KCT E VF +D+ VP G + + + V
Sbjct: 102 CEHCSVRLTLHAKCTGD-------------ENMHVFARDL--VPTGERINQVLGTPVVSD 146
Query: 72 HDDI--LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ + LI KLRPG EI + A K I ++HAK++P A + P
Sbjct: 147 SEGLGALILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFEYDP 192
>gi|253744264|gb|EET00492.1| DNA-directed RNA polymerase RPB3 [Giardia intestinalis ATCC 50581]
Length = 326
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 22 KIKCTKSASFSHSSHADDMYEKHKVFT-KDIQWVPIG-SQGDMYKSSDVGPIHD-DILIA 78
+I+C + +F + + + K +V T KDI++ G S Y S +G I I I
Sbjct: 91 EIEC-RECTFKGTLNVSNDTTKIRVVTDKDIKFDHGGISTLSNYMGSLLGVIEAPSIPIL 149
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
KL PG I+ ++A K G+ HAK+ P A R L KI L E E
Sbjct: 150 KLAPGESINALLYARKDRGKIHAKWCPAACVVLRPLAKIILCDEFE 195
>gi|124027415|ref|YP_001012735.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
gi|123978109|gb|ABM80390.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
Length = 281
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 60 GDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ S DV P++D++ I + P + + +A GR+HAK+ PV+ A +R LP +
Sbjct: 114 GDLETSDPDVRPVYDNMPIVVMAPDQRLRLQAYARLGYGREHAKWMPVSVAAHRYLPILE 173
Query: 119 LTQE---------IEG---EMAQRLQTMFSPGVISIEKKPNAGV 150
+ IE E+A +++ M S + +E +G+
Sbjct: 174 FNLDEMSDECIRCIESGYPELAAKIREMRSGSIAVVEDVNTSGL 217
>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
2162]
gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
2162]
Length = 280
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 61 DMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
+M +SSD V P++ + + +L I + +A G++HAK+SPV+ A ++ +P IT
Sbjct: 116 EMLESSDPDVTPVYGKVPVVRLTRNQSIRLEAYARLGRGKEHAKWSPVSVATHKYIPVIT 175
Query: 119 LTQE-IEGEMAQRLQTMFSPGV 139
+ E +G R GV
Sbjct: 176 VNAEKCQGTKCSRCANTCPKGV 197
>gi|326433417|gb|EGD78987.1| DNA-directed RNA polymerase II subunit RPB3 [Salpingoeca sp. ATCC
50818]
Length = 271
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C ++ +L + C + H + + + D VP+ + + S G
Sbjct: 94 CPNCVVKLELHVACRDA----HQMEVTTEHLRSTLDGPDTSVVPVATAAERRDQSIQG-- 147
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ I+I K+R G E+ +T +A K +G++HAK+ P A Y P L
Sbjct: 148 -NHIVICKIRQGQELKLTCYARKGVGKEHAKWIPTAAVAYEYDPDNAL 194
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C++ +++F L +KC+ + S +S AD + +V VP+ S+ D +
Sbjct: 92 EFCQECSVEFTLDVKCSDDQTRSVTS-ADLISNNSEV-------VPVTSKQDSTQE---- 139
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
ILI KLR G ++ + +A K ++HAK++P + P
Sbjct: 140 --QKGILIVKLRKGQDLKLKAYARKGFAKEHAKWNPTCGVAFEYDP 183
>gi|162606468|ref|XP_001713264.1| DNA-directed RNA polymerase II [Guillardia theta]
gi|12580730|emb|CAC27048.1| DNA-directed RNA polymerase II [Guillardia theta]
Length = 299
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 72 HDD--ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP-----KITLTQEIE 124
+DD I+IAKL PG I + + K IG++H+K++P+++ +R P + + +
Sbjct: 134 YDDYAIIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRFYPIYQVNIFEMKKNLR 193
Query: 125 GEMAQRLQTMFSPGV 139
++ +L+ G+
Sbjct: 194 PDILNKLENFIKDGI 208
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C++ ++ F L++KC A+ + ++ + + H + D P + + S
Sbjct: 92 EFCDECSIPFILQMKCKDEATLAVTT--EHLMPMHNL---DTTVRPACGKALRERGSTRD 146
Query: 70 PIHD--DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H+ +ILI KLR G E+++ + K G++HAK++P + P L I
Sbjct: 147 EFHNREEILIVKLRKGQELNLKAYVKKGFGKEHAKWNPTCGVAFEYDPDNALRHTI 202
>gi|390939160|ref|YP_006402898.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192267|gb|AFL67323.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 284
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
DV PI+ +I I KL I + +A G++H K+SPV+TA ++ +P ITL E
Sbjct: 128 DVVPIYGEIPILKLIKDQSIRLEAYARLGRGKEHIKWSPVSTAAHKYIPVITLNSE 183
>gi|339250374|ref|XP_003374172.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
gi|316969579|gb|EFV53647.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
Length = 213
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G + I+IAKL G E++V A K IG++HAK++P A+ + P L
Sbjct: 151 GKLSTKIIIAKLCRGQELNVVCLARKGIGKEHAKWNPTASVAFEYDPDNAL 201
>gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
gi|13124531|sp|Q9V198.1|RPOD_PYRAB RecName: Full=DNA-directed RNA polymerase subunit D
gi|5457962|emb|CAB49452.1| rpoD DNA-directed RNA polymerase, subunit D [Pyrococcus abyssi GE5]
gi|380741285|tpe|CCE69919.1| TPA: DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
Length = 259
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P + DI I KL G + FA G+DHAK+ P T +Y+ +I +++EIEG
Sbjct: 110 DVKPANPDIPIVKLAKGQRLVFNAFAKLGRGKDHAKWQPGFT-YYKYFTRIHISKEIEG 167
>gi|328768461|gb|EGF78507.1| hypothetical protein BATDEDRAFT_20338 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C Q +++ L ++C + F+ + D+ H +PI ++ D G
Sbjct: 101 CPQCSVELHLNVRCDEE--FTREVTSRDLISSHSSI------MPI-----IHGDDDSG-- 145
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
I+IAKLR G EI++ A K ++HAK+SP A + P
Sbjct: 146 ---IMIAKLRKGQEINLRCIAKKGTAKEHAKWSPCAGIAFEYDP 186
>gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
gi|20978701|sp|Q8ZYQ3.1|RPOD_PYRAE RecName: Full=DNA-directed RNA polymerase subunit D
gi|18159521|gb|AAL62940.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
Length = 260
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P++ DI I KL G I + +A + +DHAK+ ATA Y PK+ + E E
Sbjct: 118 DVVPVYKDIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASYYYYPKVVVKSENCRE 176
Query: 127 MAQRL 131
M + +
Sbjct: 177 MCKEI 181
>gi|171689616|ref|XP_001909748.1| hypothetical protein [Podospora anserina S mat+]
gi|170944770|emb|CAP70881.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CE +++ L KCT YE V +D+ VP+G + + + V
Sbjct: 100 EYCENCSVKLTLHAKCTG-------------YENMSVSARDL--VPVGERINQSLGTPVI 144
Query: 70 PIHDDI--LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D LI KLRP EI + A K I ++HAK++P A + P
Sbjct: 145 NDKDGTGPLILKLRPEQEIKLECIAKKGIAKEHAKWAPSAAIGFEYDP 192
>gi|294892119|ref|XP_002773904.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
gi|239879108|gb|EER05720.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
+ I+IAKLR ++ + M A K +G+ HAK++P T R P IT+ + IE E
Sbjct: 157 RNGIVIAKLRRNQQLTMHMEARKGVGKMHAKWNPTGTVAIRYEPVITIDRAIEYE 211
>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
4304]
gi|3122769|sp|O28002.1|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 264
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
D+I + +L G ++ + A GR+HAKF PV+ Y+++P+I + + G
Sbjct: 123 DNIPVLELFEGQQLMLEAVARLGTGREHAKFQPVSVCVYKIIPEIVVNENCNG 175
>gi|428184897|gb|EKX53751.1| hypothetical protein GUITHDRAFT_100722 [Guillardia theta CCMP2712]
Length = 319
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE-IEGEMAQRLQT 133
++IAKL+ I +T A K +G+ H+K+SP + ++ P +T+ E +EG AQ+ +T
Sbjct: 155 VVIAKLKRNQAIKLTAIAKKGVGKMHSKWSPASGVYFTYEPVVTINYERMEGLSAQQRKT 214
Query: 134 MFS---PGVI 140
PG++
Sbjct: 215 WVEACPPGIL 224
>gi|269986616|gb|EEZ92898.1| RNA polymerase insert [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 248
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DV P D+LI L+ G ID+ G DH+KF+P A FY PKIT+
Sbjct: 102 DVVPAISDMLIINLKDGEAIDLEAETAWGNGADHSKFTP-AHVFYHFYPKITI 153
>gi|148679203|gb|EDL11150.1| mCG12281 [Mus musculus]
Length = 138
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 10 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 59
>gi|410721684|ref|ZP_11361014.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
gi|410598430|gb|EKQ53003.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
Length = 266
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 60 GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ KS D + P+ D I + KL+ G E+++ A G++HAK+ P T Y+ P+I
Sbjct: 106 GDL-KSEDPNLKPVLDTIPLVKLKEGDEVELEAIAQLGFGKEHAKWQPTTTCAYKHYPEI 164
Query: 118 TL 119
+
Sbjct: 165 NI 166
>gi|145592521|ref|YP_001154523.1| RNA polymerase, insert [Pyrobaculum arsenaticum DSM 13514]
gi|166229319|sp|A4WNA4.1|RPOD_PYRAR RecName: Full=DNA-directed RNA polymerase subunit D
gi|145284289|gb|ABP51871.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum arsenaticum DSM
13514]
Length = 259
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P++ DI I KL G I + +A I +DHAK+ ATA Y PK+ + E E
Sbjct: 118 DVVPVYKDIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ-AATASYYYYPKVIIKDEKCRE 176
Query: 127 MAQRL 131
+ + +
Sbjct: 177 ICKEI 181
>gi|379005500|ref|YP_005261172.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
gi|375160953|gb|AFA40565.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
Length = 273
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P++ DI I KL G I + +A I +DHAK+ ATA Y PK+ + E E
Sbjct: 132 DVVPVYKDIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ-AATASYYYYPKVIIKDEKCRE 190
Query: 127 MAQRL 131
+ + +
Sbjct: 191 ICKEI 195
>gi|443895704|dbj|GAC73049.1| RNA polymerase II, subunit POLR2C/RPB3 [Pseudozyma antarctica T-34]
Length = 346
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSH---ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
C++ +++ L+ +CT + +S D E ++F D P K D
Sbjct: 102 CDRCSVELTLRARCTTRGNLEVTSRDLIRSDSIEGAQMFDDDAMNEPAAP-----KHPDF 156
Query: 69 G-PIHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G P+ D I++ K+ G E+D+ A K ++HAK+SP + + P L
Sbjct: 157 GRPVGHDGSMAPIMLVKMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNAL 213
>gi|389852940|ref|YP_006355174.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
gi|388250246|gb|AFK23099.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
Length = 259
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P+ DI I KL G + +A G+DHAK+ P +Y+ KI +++EIEG
Sbjct: 110 DVRPVTPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQP-GFVYYKYYTKIHISKEIEG 167
>gi|308159629|gb|EFO62154.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia P15]
Length = 326
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 22 KIKCTKSASFSHSSHADDMYEKHKVFT-KDIQWVPIG-SQGDMYKSSDVGPIHD-DILIA 78
+I+C + +F + + + K +V T KDI + G S Y S +G I I
Sbjct: 91 EIEC-RECTFKGTLNISNDSTKIRVVTDKDIHFDHGGISTLSNYLESSLGVTETPSIPIL 149
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
KL PG I+ ++A K G+ HAK+ P A R L +I L E E
Sbjct: 150 KLAPGESINALLYARKDRGKIHAKWCPAACVVLRPLARIILCDEFE 195
>gi|288560165|ref|YP_003423651.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
gi|288542875|gb|ADC46759.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
Length = 282
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
V+++D++ S GD S + P++D I + KL+ ++++ A IG++HAK+ P
Sbjct: 117 VYSRDLK-----SCGD----SRIKPVYDTIPLLKLKEDQDVELEAVAKLGIGKEHAKWVP 167
Query: 106 VATAFYRLLPKITLTQEIEGE 126
Y+ P+IT EGE
Sbjct: 168 TTVCAYKQYPEITFN---EGE 185
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+DILI KLR G EI + +A K G++HAK++P + P L +
Sbjct: 146 EDILIVKLRRGQEIRMKCYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTV 196
>gi|384498629|gb|EIE89120.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Rhizopus delemar RA 99-880]
Length = 201
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L +KCT + ++ D+ + FT P+ D D G
Sbjct: 98 CSECSVELTLHVKCTDDRTKDVTTR--DLMSTNPSFT------PVLQDKD-----DSG-- 142
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+L+ KLR GHE+ + A K + ++HAK+SPV+ + P
Sbjct: 143 ---VLLVKLRKGHELKLKCIAKKGVAKEHAKWSPVSGVAFEYDP 183
>gi|71018933|ref|XP_759697.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
gi|46099249|gb|EAK84482.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
Length = 329
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSH---ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
C++ +++ L+ +CT + +S D E ++ D P K D
Sbjct: 99 CDRCSVELTLRARCTTRGNLEVTSRDLIRSDTIENATIYDDDAMAEPAAP-----KHPDF 153
Query: 69 G-PIHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G P+ D I++ K+ G E+D+ A K ++HAK+SP + + P L
Sbjct: 154 GRPVGHDGSIAPIMLVKMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNAL 210
>gi|126465715|ref|YP_001040824.1| DNA-directed RNA polymerase subunit D [Staphylothermus marinus F1]
gi|126014538|gb|ABN69916.1| DNA-directed RNA polymerase, subunit D [Staphylothermus marinus F1]
Length = 280
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 59 QGDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ S DV P++D+I I L EI + +A G++HAK+SPV+ A ++ + I
Sbjct: 115 SGDLKTSDPDVKPVYDNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADI 174
Query: 118 TLTQ-EIEGEMAQRLQTMFSPGVISIEK 144
+ + + GE ++ + ++S E
Sbjct: 175 YIDEKKCLGENCKKCIEVCPRNILSFEN 202
>gi|159115523|ref|XP_001707984.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
gi|21842208|gb|AAM77734.1|AF510642_1 RNA polymerase II subunit Rpb3 [Giardia intestinalis]
gi|157436093|gb|EDO80310.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
Length = 326
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 22 KIKCTKSASFSHSSHADDMYEKHKVFT-KDIQWVPIG-SQGDMYKSSDVGPIHD-DILIA 78
+I+C + +F + + + K +V T KDI++ G S Y S G I I
Sbjct: 91 EIEC-RECTFKGTLNISNDSTKIRVVTDKDIKFDHGGISTLSNYLESSFGAAETPSIPIL 149
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
KL PG I+ ++A K G+ HAK+ P A R L +I L E E
Sbjct: 150 KLAPGESINALLYARKDRGKIHAKWCPAACVVLRPLARIILCDEFE 195
>gi|332157864|ref|YP_004423143.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
gi|331033327|gb|AEC51139.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
Length = 259
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P++ +I I KL G ++ +A G+DHAK+ P T +Y+ KI ++++IEG
Sbjct: 110 DVKPVNPNIPIVKLAKGQKLVFNAYARLGRGKDHAKWQPGFT-YYKYYTKIHISKKIEG- 167
Query: 127 MAQRLQTMFSPGVISIEKKPNAGVV 151
++L+ + + +E+ N +V
Sbjct: 168 -WEKLKKLAKKRGLPVEENDNEIIV 191
>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
Length = 280
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
DV P++ +I I KL I + +A G++H K+SPV+TA ++ +P IT+ E
Sbjct: 124 DVVPVYGEIPILKLIKDQSIRLEAYARLGRGKEHIKWSPVSTAAHKYVPAITIDSE 179
>gi|302679472|ref|XP_003029418.1| hypothetical protein SCHCODRAFT_39441 [Schizophyllum commune H4-8]
gi|300103108|gb|EFI94515.1| hypothetical protein SCHCODRAFT_39441, partial [Schizophyllum
commune H4-8]
Length = 257
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 31/121 (25%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWV----PIGSQGD------ 61
C+ ++ L +KCT+ + + D+ KH D+Q V P G++GD
Sbjct: 88 CQYCAIELVLDVKCTED------NMSMDVTSKHL----DVQNVQPGQPSGAEGDEMASRP 137
Query: 62 -------MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
Y+ D PI LIA++R G + V A K I ++H+K+SP + +
Sbjct: 138 PQFGWPVTYREPDAEPI----LIARIRKGQALKVRCIAKKGIAKEHSKWSPCSAVGFEYD 193
Query: 115 P 115
P
Sbjct: 194 P 194
>gi|242779067|ref|XP_002479367.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
gi|218722986|gb|EED22404.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + +++ L +C + ADD+ KV+++D+ V G + + + + V
Sbjct: 99 CSRCSVRLTLHARCNQ---------ADDVM---KVYSRDL--VVTGDRANEWVGNPVITD 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LIAKL G E+ +T A K I ++HAK+SP + + P L
Sbjct: 145 PEGKGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPTSAVGFEYDPHNNL 194
>gi|15678067|ref|NP_275181.1| DNA-directed RNA polymerase subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122766|sp|O26144.1|RPOD_METTH RecName: Full=DNA-directed RNA polymerase subunit D
gi|2621073|gb|AAB84545.1| DNA-dependent RNA polymerase, subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 264
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 60 GDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ ++ V P++ DI + KL E+++ A +GR+HAK+ P Y+ P+I
Sbjct: 109 GDLVSETPAVKPVYPDIPLVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYKYYPRIE 168
Query: 119 LTQEIE 124
+++ +
Sbjct: 169 FSEDCD 174
>gi|390602421|gb|EIN11814.1| hypothetical protein PUNSTDRAFT_61925 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 301
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D +L+ KLR G E+ V A K I ++HAKFSP A + P
Sbjct: 159 DPVLLCKLRKGQELKVRCIAKKGISKEHAKFSPCAAVSFEYDP 201
>gi|261199520|ref|XP_002626161.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239594369|gb|EEQ76950.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239615533|gb|EEQ92520.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ER-3]
gi|327354685|gb|EGE83542.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 346
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-------GPIHDDIL 76
+C + S +D+ KV+ +D+ V +G + + + + V GP L
Sbjct: 102 RCVVTLSLQARCTGEDIM---KVYARDL--VVVGDRANEWVGNPVITDAEGKGP-----L 151
Query: 77 IAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
I KLR G EI +T A K I ++HAK++P A + P L
Sbjct: 152 ICKLRRGQEIKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNL 194
>gi|212533885|ref|XP_002147099.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072463|gb|EEA26552.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 352
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + +++ L +C + ADD+ KV+++D+ V G + + + + V
Sbjct: 99 CSRCSVRLTLHARC---------NQADDVM---KVYSRDL--VVTGDRANEWVGNPVITD 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LIAKL G E+ +T A K I ++HAK+SP + + P L
Sbjct: 145 PEGKGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPTSAVGFEYDPHNNL 194
>gi|126460700|ref|YP_001056978.1| DNA-directed RNA polymerase subunit D [Pyrobaculum calidifontis JCM
11548]
gi|166229320|sp|A3MXZ5.1|RPOD_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit D
gi|126250421|gb|ABO09512.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum calidifontis
JCM 11548]
Length = 258
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 60 GDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ DV P++ DI I KL G + V +A RDHAK+ A A Y PK+
Sbjct: 110 GDLVADRPDVAPVYKDIPIVKLVEGQSVVVEAYAKLGRARDHAKWQ-AALASYYYYPKVV 168
Query: 119 LTQEIEGEMAQRL 131
+ +E EM + +
Sbjct: 169 VKREECREMCKEV 181
>gi|146304892|ref|YP_001192208.1| DNA-directed RNA polymerase D [Metallosphaera sedula DSM 5348]
gi|145703142|gb|ABP96284.1| DNA-directed RNA polymerase, subunit D [Metallosphaera sedula DSM
5348]
Length = 262
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 23 IKCTKSASFSHSSHADDMYEKHK---VFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAK 79
I+CT++ + D+ + V+++DI+ + +V PI DI I
Sbjct: 83 IECTENCDRCFTKAYIDVKAEDSQVMVYSRDIRT----------EDPNVTPISKDIPIVL 132
Query: 80 LRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFS 136
L ++ + M G++HAKF+PV+ A R PK+ + ++ E + + +FS
Sbjct: 133 LGKNQKVTLEMKMRLGYGKEHAKFNPVSLAILRYKPKVEVNKDCEKAVEVCPERVFS 189
>gi|212533887|ref|XP_002147100.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072464|gb|EEA26553.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + +++ L +C + ADD+ KV+++D+ V G + + + + V
Sbjct: 117 CSRCSVRLTLHARC---------NQADDVM---KVYSRDL--VVTGDRANEWVGNPVITD 162
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LIAKL G E+ +T A K I ++HAK+SP + + P L
Sbjct: 163 PEGKGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPTSAVGFEYDPHNNL 212
>gi|123448560|ref|XP_001313008.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121894876|gb|EAY00079.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 322
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 62 MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
++ + D P + I KL PG + + + K IGR+HAK+SPV + Y + I +
Sbjct: 157 LFANGDSNP--QPVTITKLAPGQTLRLAAYIRKGIGRNHAKWSPVCVSTYHQVASIDFRE 214
Query: 122 EIEGEMAQR 130
+ M Q+
Sbjct: 215 AYKQIMDQK 223
>gi|403338254|gb|EJY68358.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 329
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH-- 72
D +FQ KC S+ + S ++ H V + Q + S + P+H
Sbjct: 106 DVDKFQFSDKCACSSKCVNCSV---QFKLHAVCSDRDQMEVNTRHINPLSESSIMPVHYV 162
Query: 73 -------DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
D ILI KL ++D+ + A K G+ HAK+S VAT R P + + Q+
Sbjct: 163 DSQGKEEDPILIMKLSKNQQLDMNLIARKGTGKLHAKWSSVATCQMRKEPIVEIDQD 219
>gi|388854978|emb|CCF51481.1| related to RPB3-DNA-directed RNA polymerase II chain [Ustilago
hordei]
Length = 346
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSH---ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
C++ +++ L+ +CT + +S D E ++ D P K D
Sbjct: 99 CDRCSVELTLRARCTTRGNLEVTSRDLIRSDTIENATIYDDDAMNEPAAP-----KHPDF 153
Query: 69 G-PIHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G P+ D I++ K+ G E+D+ A K ++HAK+SP + + P L
Sbjct: 154 GRPVGHDGSIPPIMLVKMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNAL 210
>gi|325096255|gb|EGC49565.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 475
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 27/111 (24%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--- 68
C + + QL+ +CT +D+ KV+ +D+ V +G + + + + V
Sbjct: 100 CARCVVTLQLQARCT----------GEDIM---KVYARDL--VIVGDRANEWVGNPVIMD 144
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
GP+ I KLR G EI +T A K I ++HAK++P A + P
Sbjct: 145 AEGKGPV-----ICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDP 190
>gi|225557550|gb|EEH05836.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces capsulatus
G186AR]
Length = 475
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 27/111 (24%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--- 68
C + + QL+ +CT +D+ KV+ +D+ V +G + + + + V
Sbjct: 100 CARCVVTLQLQARCT----------GEDIM---KVYARDL--VVVGDRANEWVGNPVIMD 144
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
GP+ I KLR G EI +T A K I ++HAK++P A + P
Sbjct: 145 AEGKGPV-----ICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDP 190
>gi|358397037|gb|EHK46412.1| hypothetical protein TRIATDRAFT_153717, partial [Trichoderma
atroviride IMI 206040]
Length = 377
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE ++ L KCT E KV+ +D+ V G + + P
Sbjct: 104 CEHCSVSLTLHAKCTSD-------------EIMKVYARDLV-VDGRHAGSVGNAVITDPE 149
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LIAKLR G E+ +T A K I ++HAK+ P + + P
Sbjct: 150 GLGCLIAKLRKGQELKITCIAKKGIAKEHAKWMPTSAVGFEYDP 193
>gi|119719198|ref|YP_919693.1| RNA polymerase, insert [Thermofilum pendens Hrk 5]
gi|119524318|gb|ABL77690.1| DNA-directed RNA polymerase, subunit D [Thermofilum pendens Hrk 5]
Length = 283
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 64 KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
+S+ + P+ +I I KL G +I +T A GR HAK+ PV Y+ P + + +E
Sbjct: 118 ESAGIEPVSKNIPILKLGKGQKISLTAIARMGTGRQHAKWQPVGPVGYKYKPVVRILRE 176
>gi|124486064|ref|YP_001030680.1| DNA-directed RNA polymerase subunit D [Methanocorpusculum labreanum
Z]
gi|124363605|gb|ABN07413.1| DNA-directed RNA polymerase, subunit D [Methanocorpusculum
labreanum Z]
Length = 275
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 6 RLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK- 64
RL P + D Q+ + +C S H M FT ++ + + GD+
Sbjct: 61 RLGLIPIKTDLSQYVPRSEC--SCGGEGCPHCTVM------FTLSVEGPKMVTSGDLISM 112
Query: 65 SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
+V P+H++I I KL ++ + A + G++HAK+ P Y P IT+ +
Sbjct: 113 DENVVPVHNNIPIVKLWENQKVVLEAVAEVNYGKEHAKWQPTLACGYSEYPVITIKDTCD 172
Query: 125 G 125
G
Sbjct: 173 G 173
>gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
gi|23822100|sp|Q8TVB8.1|RPOD_METKA RecName: Full=DNA-directed RNA polymerase subunit D
gi|19888146|gb|AAM02687.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
Length = 275
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFS 104
KV+ +D++ + DV P D LI ++ I + + AV +G +HAK+
Sbjct: 110 KVYARDLK----------FDHPDVEPAFPDTLITEVGEDQRIRLEVIAVPGLGLEHAKWK 159
Query: 105 PVATAFYRLLPKITLTQEIEGEMAQRLQTMFSP-GVISIEK 144
PV+ Y+ LP++ + E ++ ++ T P G+I IE
Sbjct: 160 PVSAVGYKGLPELEID---EDKLKEKKITYECPQGIIRIEN 197
>gi|312137109|ref|YP_004004446.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
gi|311224828|gb|ADP77684.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
Length = 264
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 47 FTKDIQWVPIGSQGDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
FT Q + GD+ S ++ P++++I I KL +I++ A +G+ HAK+ P
Sbjct: 96 FTLKKQGPCVVYSGDLVPSDPEIKPVYENIPIIKLEEDEKIELEAIAQLGLGKKHAKWRP 155
Query: 106 VATAFYRLLPKITL 119
Y+ PKI +
Sbjct: 156 TTACGYKYYPKIII 169
>gi|320033013|gb|EFW14963.1| DNA-directed RNA polymerase 2 subunit RPB3 [Coccidioides posadasii
str. Silveira]
Length = 345
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + QL KCT V+ +D+ V +G + + + + V
Sbjct: 100 CSRCVITLQLHAKCTGEGVMV-------------VYARDL--VVVGDRANEWVGNPVIND 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ +T K I ++HAK+SP A + P L
Sbjct: 145 PAGKGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPTAAVGFEYDPHNNL 194
>gi|336261545|ref|XP_003345560.1| hypothetical protein SMAC_06213 [Sordaria macrospora k-hell]
gi|380094769|emb|CCC07270.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 311
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV- 68
E CE ++ L KCT DD+ +V +D+ VP+G + + S +
Sbjct: 100 EYCEHCSVTLNLHAKCT----------GDDIM---QVCARDL--VPVGDRVNQVLGSPII 144
Query: 69 -GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LI KLR G EI + A K I ++H+K++P A + P L
Sbjct: 145 NDPEGQGPLILKLRHGQEIKLQCIAKKGIAKEHSKWAPSAAIGFEYDPHNKL 196
>gi|119190113|ref|XP_001245663.1| hypothetical protein CIMG_05104 [Coccidioides immitis RS]
gi|392868567|gb|EAS34367.2| RNA polymerase II subunit 3 [Coccidioides immitis RS]
Length = 345
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + QL KCT V+ +D+ V +G + + + + V
Sbjct: 100 CSRCVITLQLHAKCTGEGVMV-------------VYARDL--VVVGDRANEWVGNPVIND 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ +T K I ++HAK+SP A + P L
Sbjct: 145 PAGKGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPTAAVGFEYDPHNNL 194
>gi|402076627|gb|EJT72050.1| DNA-directed RNA polymerase II subunit RPB3 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 340
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--GPIHDDILIAKLR 81
C+ + + DD K + KD+ WV +G+ + Y V P + I++ KLR
Sbjct: 103 NCSVTIEINARCEVDDPGHVSKFYAKDL-WV-VGNPPNKYVGKPVITDPDENGIILFKLR 160
Query: 82 PGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G EI + A K I ++HAK+ P + P L
Sbjct: 161 YGQEIRIRCIAKKGIAKEHAKWCPATAIGFEYDPHNRL 198
>gi|319411912|emb|CBQ73955.1| related to RPB3-DNA-directed RNA polymerase II chain [Sporisorium
reilianum SRZ2]
Length = 350
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSH---ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
C++ +++ L+ +CT + +S D E ++ D P K D
Sbjct: 99 CDRCSVELTLRARCTTRGNLEVTSRDLIRSDTIESATIYDDDAMAEPAAP-----KHPDF 153
Query: 69 G-PIHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G P+ D I++ K+ G E+D+ A K ++HAK+SP + + P L
Sbjct: 154 GRPVGHDGSTPPIMLVKMSKGQELDLRCIARKGFAKEHAKWSPCSAVGFEYDPHNAL 210
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
++ILI KLR G E+++ +A K G++HAK++P + P L I
Sbjct: 167 EEILIVKLRKGQELNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTI 217
>gi|323454964|gb|EGB10833.1| hypothetical protein AURANDRAFT_22116 [Aureococcus anophagefferens]
Length = 324
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 67 DVGPIH------------DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
DV P+H I + KL G E+ +T A G++HAK+ PV+ +R +
Sbjct: 143 DVAPVHFVSKREESTSQETGIALVKLAKGQELKLTCIAKLGCGKEHAKWIPVSKCVFRPV 202
Query: 115 PKITLTQEIEGEMAQRLQ 132
P++T E+A L+
Sbjct: 203 PEVTWDDAAVAELAPTLR 220
>gi|374327628|ref|YP_005085828.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
gi|356642897|gb|AET33576.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
Length = 260
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 60 GDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ + DV P++ DI I KL G I + +A + RDHAK+ A A Y P++
Sbjct: 110 GDLVSERPDVAPVYKDIPIVKLVKGQSIVLEAYAKLGVARDHAKWQ-AALASYYYYPRVE 168
Query: 119 LTQE 122
+ E
Sbjct: 169 VRNE 172
>gi|403220422|dbj|BAM38555.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 354
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 12 CEQDTLQFQLKIKCTKSAS--FSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
C + T+ + L + C S S +H D + ++ K++ +PI +++
Sbjct: 96 CARCTVDYTLDVSCNDSDSRVVTHFDIVPDESQSQSIYGKNLP-MPIPRA----DATNFN 150
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
D I I KL+ GH I++ + A K +G+ HAK+ V Y++ P+ + I
Sbjct: 151 GGTDGIPIVKLKRGHSINMKLTATKGLGKFHAKWI-VGNVNYKMEPRFSFNSSI 203
>gi|430812471|emb|CCJ30120.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 289
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 22/104 (21%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + ++Q L KCT + V++KD+ + +S + P
Sbjct: 94 CTKCSVQLTLYAKCTSDGTMD-------------VYSKDLI---------VEHNSTIDPD 131
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
ILI KLR E+ + A K I ++HAK+SPV+ + P
Sbjct: 132 GKGILICKLRKAQELRLKCIAKKGIAKEHAKWSPVSAIAFEYDP 175
>gi|366993697|ref|XP_003676613.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
gi|342302480|emb|CCC70253.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
Length = 318
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYAKDLVIVSNLLGRNIGH-----------PIIQDREGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKITCIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|336371374|gb|EGN99713.1| hypothetical protein SERLA73DRAFT_88301 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384130|gb|EGO25278.1| DNA-directed RNA polymerase II, subunit 3 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ +++ +L + C ++ + +S+ D+ + H + + +G+ + P+
Sbjct: 96 CQYCSIELRLDVACHENRTMEVTSNHLDVVDSHTYADEGEAGEELTKRGENFGH----PV 151
Query: 72 HDD------ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
D +LI K+R G E+ + A K I ++HAK+SP + + P
Sbjct: 152 GKDDVSLPPVLICKMRKGQELKLRCIAKKGIAKEHAKWSPCSAVSFEYDP 201
>gi|398364469|ref|NP_012243.3| Rpb3p [Saccharomyces cerevisiae S288c]
gi|730603|sp|P16370.2|RPB3_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=B44.5; AltName:
Full=DNA-directed RNA polymerase II 45 kDa polypeptide
gi|14278326|pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278337|pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278367|pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
gi|20150715|pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749618|pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
gi|30749739|pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
gi|34810555|pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
gi|46015417|pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
gi|46015782|pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965913|pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965925|pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966109|pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
gi|56966123|pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
gi|56966133|pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966143|pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
gi|56966153|pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
gi|58177166|pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679446|pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
gi|61679463|pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679504|pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
gi|61679517|pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754245|pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590856|pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
gi|122920063|pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920078|pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920093|pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921032|pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921068|pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921084|pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921099|pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921111|pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104676|pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104691|pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104712|pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104724|pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104736|pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387186|pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877775|pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172229|pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172242|pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613464|pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368736|pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983592|pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781918|pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781931|pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781944|pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781957|pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781970|pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781984|pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781997|pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782010|pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104513|pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839443|pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839458|pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839473|pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
gi|266618767|pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914554|pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982477|pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
gi|295982490|pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
gi|325053965|pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
gi|325053980|pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634540|pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197458|pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197470|pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197482|pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197494|pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197506|pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197518|pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197530|pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197542|pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197554|pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197566|pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197578|pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781199|pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380838|pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546292|pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546310|pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546327|pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546344|pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546361|pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546378|pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546394|pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546411|pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977881|pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977896|pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
gi|380764981|pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145448|pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145461|pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|599978|emb|CAA86971.1| RNA polymerase II [Saccharomyces cerevisiae]
gi|151943136|gb|EDN61471.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190406243|gb|EDV09510.1| RNA polymerase II 45 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207344276|gb|EDZ71474.1| YIL021Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272154|gb|EEU07153.1| Rpb3p [Saccharomyces cerevisiae JAY291]
gi|259147237|emb|CAY80490.1| Rpb3p [Saccharomyces cerevisiae EC1118]
gi|285812625|tpg|DAA08524.1| TPA: Rpb3p [Saccharomyces cerevisiae S288c]
gi|323333059|gb|EGA74460.1| Rpb3p [Saccharomyces cerevisiae AWRI796]
gi|323354620|gb|EGA86456.1| Rpb3p [Saccharomyces cerevisiae VL3]
gi|349578928|dbj|GAA24092.1| K7_Rpb3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765154|gb|EHN06668.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298697|gb|EIW09793.1| Rpb3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 318
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|406606315|emb|CCH42306.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 321
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ +LK++ + ++ + V++KD+ V + ++ + P
Sbjct: 90 CNKCSVELELKVRADQDSTLN-------------VYSKDLFIVSQNTHLNIGSAIITDPE 136
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ +LI KLR E+ + A K I ++HAK+SP A + P
Sbjct: 137 ENGVLICKLRNEQELFIRCIAKKGIAKEHAKWSPCAAIGFEYDP 180
>gi|257471948|pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471963|pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
Length = 324
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 109 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 157
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 158 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 188
>gi|358378283|gb|EHK15965.1| hypothetical protein TRIVIDRAFT_195864 [Trichoderma virens Gv29-8]
Length = 338
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 26/110 (23%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG-P 70
CEQ ++ L KCT E KV+ +D+ D ++ VG P
Sbjct: 104 CEQCSVSLTLHAKCTSD-------------EIMKVYARDLV-------ADGRHANSVGTP 143
Query: 71 IHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
I D LIAKLR E+ +T A K I ++HAK+ P + + P
Sbjct: 144 IITDPEGLGCLIAKLRKDQELKITCIAKKGIAKEHAKWMPTSAVGFEYDP 193
>gi|303322553|ref|XP_003071268.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110970|gb|EER29123.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 345
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + QL KCT V+ +D+ V +G + + + + V
Sbjct: 100 CSRCLITLQLHAKCTGEGVMV-------------VYARDL--VVVGDRANEWVGNPVIND 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ +T K I ++HAK+SP A + P L
Sbjct: 145 PAGKGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPTAAVGFEYDPHNNL 194
>gi|330506856|ref|YP_004383284.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
gi|328927664|gb|AEB67466.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
Length = 264
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 4 NLRLKYEPCEQDTLQ-FQLKIKCTKSASFSHSSHADDMYEKHK---VFTKDIQWVPIGSQ 59
LR+ P D L F C + D M K V+++DIQ+ G
Sbjct: 59 GLRIGEVPLVADELDLFSQPEDCQCGGTGCPGCRVDFMLSKEGPGMVYSEDIQFTDPG-- 116
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
V P D I + L G ++ + +A K +G++H+K+ Y+ LP IT+
Sbjct: 117 --------VRPAFDKIPLVILGEGEKLVMEGYATKRVGKEHSKWQAGTLCGYKNLPSITV 168
Query: 120 TQEIEG 125
++ +G
Sbjct: 169 SEACDG 174
>gi|365760141|gb|EHN01882.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839643|gb|EJT42771.1| RPB3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 318
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|323308700|gb|EGA61941.1| Rpb3p [Saccharomyces cerevisiae FostersO]
Length = 318
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|85082680|ref|XP_956964.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|7801032|emb|CAB91428.1| probable DNA-directed RNA polymerase II chain RPB3 [Neurospora
crassa]
gi|28918046|gb|EAA27728.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|336468167|gb|EGO56330.1| hypothetical protein NEUTE1DRAFT_83471 [Neurospora tetrasperma FGSC
2508]
gi|350289588|gb|EGZ70813.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 337
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV- 68
E CE ++ L KCT DD+ +V +D+ VP+G + + S +
Sbjct: 100 EYCEHCSVTLNLHAKCT----------GDDIM---QVCARDL--VPVGDRVNQVLGSPII 144
Query: 69 -GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LI KLR G EI + A K I ++H+K++P A + P L
Sbjct: 145 NDPEGQGPLILKLRHGQEIKLQCIAKKGIAKEHSKWAPSAAIGFEYDPHNKL 196
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+DILI KLR G E+ +A K G++HAK++P + P
Sbjct: 139 EDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 181
>gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gibberella zeae PH-1]
Length = 337
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
CEQ ++ L KCT E KV+ +D+ V G G+ S + P
Sbjct: 101 CEQCSVTLTLHAKCTSD-------------EIMKVYARDL--VVDGRHGNSVGSPMIMDP 145
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
LIAKLR E+ ++ A K I ++HAK+ P + + P L
Sbjct: 146 EGYGCLIAKLRKHQELKISCIAKKGIAKEHAKWMPTSAVGFEYDPHNKLN 195
>gi|408391899|gb|EKJ71265.1| hypothetical protein FPSE_08504 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
CEQ ++ L KCT E KV+ +D+ V G G+ S + P
Sbjct: 104 CEQCSVTLTLHAKCTSD-------------EIMKVYARDL--VVDGRHGNSVGSPMIMDP 148
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
LIAKLR E+ ++ A K I ++HAK+ P + + P L
Sbjct: 149 EGYGCLIAKLRKHQELKISCIAKKGIAKEHAKWMPTSAVGFEYDPHNKLN 198
>gi|323304520|gb|EGA58286.1| Rpb3p [Saccharomyces cerevisiae FostersB]
Length = 259
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 44 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 92
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 93 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 123
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+DILI KLR G E+ +A K G++HAK++P + P
Sbjct: 121 EDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP 163
>gi|254839488|pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839503|pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
gi|254839518|pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839533|pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
Length = 347
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 132 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 180
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 181 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 211
>gi|323337216|gb|EGA78470.1| Rpb3p [Saccharomyces cerevisiae Vin13]
Length = 240
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|353251635|pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 268
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|405121028|gb|AFR95798.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var. grubii
H99]
Length = 377
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P ILIAK+ G EIDV A K I + HAK+SP++T + P
Sbjct: 185 NPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|399949868|gb|AFP65525.1| DNA-directed RNA polymerase II [Chroomonas mesostigmatica CCMP1168]
Length = 304
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 25 CTK-SASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD--------- 74
C+K S +FS A D Y VF+ D+ + + + + + V PIHD
Sbjct: 90 CSKCSVAFSLDVIAKDKY--RDVFSTDL---IVLNPKESFFAKHVSPIHDSGTADFPRLE 144
Query: 75 -ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVA 107
ILI+KL G + + A K IG +HAK+SP++
Sbjct: 145 PILISKLSQGQRLKLIGVAKKGIGLEHAKWSPIS 178
>gi|297527612|ref|YP_003669636.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
gi|297256528|gb|ADI32737.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
Length = 280
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 59 QGDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ S DV P++D+I I L EI + +A G++HAK+SPV+ A ++ + I
Sbjct: 115 SGDLKTSDPDVKPVYDNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSIAAHKYIADI 174
Query: 118 TLTQ-EIEGEMAQRLQTMFSPGVIS 141
+ + + GE ++ + ++S
Sbjct: 175 HIDEKKCLGENCKKCVEVCPRNILS 199
>gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) [Saccharomyces cerevisiae]
Length = 318
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAGIEFEYDP 182
>gi|50307587|ref|XP_453773.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642907|emb|CAH00869.1| KLLA0D16170p [Kluyveromyces lactis]
Length = 307
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVG-PIHDD-----ILIAKLRPGHEIDVTMFAVKSIGR 98
V+ KD+Q I S K ++G PI D +LI KLR G EI V A K I +
Sbjct: 112 NVYAKDLQ---ITSD---LKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISK 165
Query: 99 DHAKFSPVATAFYRLLP 115
+HAK+SP A + P
Sbjct: 166 EHAKWSPSAAIEFEYDP 182
>gi|134112527|ref|XP_775239.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 377
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P ILIAK+ G EIDV A K I + HAK+SP++T + P
Sbjct: 185 NPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|58267768|ref|XP_571040.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227274|gb|AAW43733.1| RNA polymerase II subunit 3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 377
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P ILIAK+ G EIDV A K I + HAK+SP++T + P
Sbjct: 185 NPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|401625294|gb|EJS43310.1| rpb3p [Saccharomyces arboricola H-6]
Length = 318
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYGKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|296812527|ref|XP_002846601.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
gi|238841857|gb|EEQ31519.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
Length = 359
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C++ + L KCT E KV+ +D+ V +G + + + + V
Sbjct: 110 CQRCVINLSLHAKCTSE-------------EIMKVYARDL--VVVGDRANEWVGNPVLTD 154
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ K I ++HAK++P A + P L
Sbjct: 155 PEGKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDPHNNL 204
>gi|321259555|ref|XP_003194498.1| RNA polymerase II subunit 3 [Cryptococcus gattii WM276]
gi|317460969|gb|ADV22711.1| RNA polymerase II subunit 3, putative [Cryptococcus gattii WM276]
Length = 377
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
ILIAK+ G EIDV A K I + HAK+SP++T + P
Sbjct: 191 ILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
>gi|154274952|ref|XP_001538327.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414767|gb|EDN10129.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 576
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 27/111 (24%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--- 68
C + + QL+ +CT +D+ KV+ +D+ V +G + + + + V
Sbjct: 123 CARCVVTLQLQARCT----------GEDIM---KVYARDL--VIVGDRANEWVGNPVIMD 167
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
GP+ I KLR G EI +T A K I ++HAK++P A + P
Sbjct: 168 AEGKGPV-----ICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDP 213
>gi|365992198|ref|XP_003672927.1| hypothetical protein NDAI_0L02000 [Naumovozyma dairenensis CBS 421]
gi|410730081|ref|XP_003671218.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
gi|401780038|emb|CCD25975.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Length = 311
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
++ +LI KLR G E+ +T A K I ++HAK+ P A + P
Sbjct: 139 NNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|67540164|ref|XP_663856.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|40739446|gb|EAA58636.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|259479538|tpe|CBF69852.1| TPA: RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090)
[Aspergillus nidulans FGSC A4]
Length = 333
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 12 CEQDTLQFQLKIKC---TKSASFSHSSHADDMYEK-HKVFTKDIQWVPIGSQGDMYKSSD 67
C+QD +++ +C S + S HA ++ +V+ +D+ V G + + + +
Sbjct: 83 CDQD-VEYTRDCECEDHCARCSVTLSLHARCTSDEIMRVYARDL--VITGERANEWVGNP 139
Query: 68 V--GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
V P + LI KLR G E+ +T A K I ++H+K++P A + P L
Sbjct: 140 VITDPDGNGPLICKLRRGQELKMTCIAKKGIAKEHSKWAPTAAIGFEYDPHNNL 193
>gi|300122175|emb|CBK22749.2| unnamed protein product [Blastocystis hominis]
Length = 312
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI----EGEM 127
++ I I L PG + V A+ +G++HAK+SPV T + +P + L +++ + E
Sbjct: 143 NEGIRIVSLAPGQTLHVECEAILGVGKEHAKWSPVGTVSMKYVPIVHLNRDLLDSKDFEF 202
Query: 128 AQRLQTMFSPGVISIEKKPN 147
Q+L V SI N
Sbjct: 203 KQKLVDSCPRKVFSINPDTN 222
>gi|83769667|dbj|BAE59802.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869849|gb|EIT79042.1| RNA polymerase [Aspergillus oryzae 3.042]
Length = 342
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--GPIHDDILIAKLR 81
+C+ + + DD+ +V+ +D+ V G + + + + V P + LI KLR
Sbjct: 101 RCSVTLTLHARCTGDDIM---RVYARDL--VVSGERANEWVGNPVITDPEGNGPLICKLR 155
Query: 82 PGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G E+ +T A K I ++HAK+ P A + P L
Sbjct: 156 RGQELKMTCIAKKGIAKEHAKWMPTAAVGFEYDPHNNL 193
>gi|302908578|ref|XP_003049900.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730836|gb|EEU44187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 335
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
CEQ ++ L KCT E KV+ +D+ V G + S + P
Sbjct: 101 CEQCSVTLNLHAKCTSD-------------EIMKVYARDL--VVDGRHANSVGSPVITDP 145
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LIAKLR E+ +T A K I ++HAK+ P + + P L
Sbjct: 146 EGYGCLIAKLRKDQELKITCIAKKGIAKEHAKWMPTSAVGFEYDPHNKL 194
>gi|115384192|ref|XP_001208643.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196335|gb|EAU38035.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 331
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + ++ QL +CT DD+ +V+ +D+ G + + + + V
Sbjct: 100 CARCSVTLQLHARCT----------GDDIM---RVYARDLAVA--GERANDWVGTPVITD 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LI KLR G E+ +T A K I ++HAK++P A + P L
Sbjct: 145 PEGKGPLICKLRRGQELKMTCIAKKGIAKEHAKWAPTAAIGFEYDPHNNL 194
>gi|378732910|gb|EHY59369.1| DNA-directed RNA polymerase II subunit C [Exophiala dermatitidis
NIH/UT8656]
Length = 335
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE ++ +L +CT+ + M + D + IG Q + + GP
Sbjct: 110 CEYCSVVLRLHARCTRPGTM--------MVYARDLTVADPRQDGIG-QPVIRDVNGTGP- 159
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LIAKLR G EI + A K I ++HAK++P A + P L
Sbjct: 160 ----LIAKLRQGQEIHLECIAKKGIAKEHAKWAPTAAVGFEYDPNNKL 203
>gi|238496743|ref|XP_002379607.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
gi|317146984|ref|XP_001821804.2| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus oryzae
RIB40]
gi|220694487|gb|EED50831.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
Length = 338
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--GPIHDDILIAKLR 81
+C+ + + DD+ +V+ +D+ V G + + + + V P + LI KLR
Sbjct: 101 RCSVTLTLHARCTGDDIM---RVYARDL--VVSGERANEWVGNPVITDPEGNGPLICKLR 155
Query: 82 PGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G E+ +T A K I ++HAK+ P A + P L
Sbjct: 156 RGQELKMTCIAKKGIAKEHAKWMPTAAVGFEYDPHNNL 193
>gi|323348153|gb|EGA82407.1| Rpb3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFXESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|330834009|ref|YP_004408737.1| DNA-directed RNA polymerase subunit D [Metallosphaera cuprina Ar-4]
gi|329566148|gb|AEB94253.1| DNA-directed RNA polymerase, subunit D [Metallosphaera cuprina
Ar-4]
Length = 262
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
V++KDI+ + +V PI DI I L +I + M G++HAKF+P
Sbjct: 109 VYSKDIRT----------EDPNVIPISKDIPIVLLGKKQKISLEMRMRLGYGKEHAKFNP 158
Query: 106 VATAFYRLLPKITLTQEIE 124
V A R PK+ + E
Sbjct: 159 VTMAIVRYKPKVKVNSNCE 177
>gi|383319963|ref|YP_005380804.1| DNA-directed RNA polymerase subunit D [Methanocella conradii HZ254]
gi|379321333|gb|AFD00286.1| DNA-directed RNA polymerase, subunit D [Methanocella conradii
HZ254]
Length = 262
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 64 KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
KSSD P D+I I +L+ G ++ +T A G++HAKF PV Y+ +P I +++
Sbjct: 110 KSSDPETVPADDNIPIIELKEGQKLVLTAVARLGHGKEHAKFQPVCPPGYKYVPIIEISE 169
Query: 122 EIEGEMAQRLQTMFSPGVISIEKK 145
+ + ++ GV +++K
Sbjct: 170 KCDS--CKQCVEACPRGVFAVDKN 191
>gi|375083505|ref|ZP_09730525.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
gi|374741832|gb|EHR78250.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
Length = 258
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P+ DI I KL G + +A G+DHAK+ P A+Y+ L K+ +++E+
Sbjct: 109 DVKPVTPDIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP-GFAYYKYLTKMHVSKEVPN- 166
Query: 127 MAQRLQTMFSPGVISIEKKPNAGVV 151
++++ + + + IE+ N ++
Sbjct: 167 -WEKIKELAARKKLPIEENENELII 190
>gi|299751420|ref|XP_001830255.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298409367|gb|EAU91402.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 360
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG-- 69
C +Q +L + C + +S+ ++ ++IQ ++ + VG
Sbjct: 89 CSYCAVQLRLDVACNDDTTMEVTSNHLEVVPLDDYMQEEIQHGEEKAKRTQWFGHPVGKN 148
Query: 70 -PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P +LI K+R G E+ V A K I ++HAK+SP + + P
Sbjct: 149 EPGTPPVLICKIRKGQELRVKCIAKKGIAKEHAKWSPCSAVSFEYDP 195
>gi|227828307|ref|YP_002830087.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|229585537|ref|YP_002844039.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238620499|ref|YP_002915325.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|385773987|ref|YP_005646554.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
gi|385776629|ref|YP_005649197.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|259494206|sp|C3N054.1|RPOD_SULIA RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494207|sp|C4KJ93.1|RPOD_SULIK RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494209|sp|C3MZ05.1|RPOD_SULIM RecName: Full=DNA-directed RNA polymerase subunit D
gi|227460103|gb|ACP38789.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|228020587|gb|ACP55994.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238381569|gb|ACR42657.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|323475377|gb|ADX85983.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|323478102|gb|ADX83340.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
Length = 265
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>gi|325968486|ref|YP_004244678.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
gi|323707689|gb|ADY01176.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
Length = 317
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 55 PIGSQGDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYR 112
P+ G KS D V P+++D+ I KL PG +I + +A R+HAK+ A+Y
Sbjct: 121 PVVVYGRDLKSDDPEVRPVYEDVPIVKLVPGQKIVLEAYAKLGRARNHAKWQAGLAAYY- 179
Query: 113 LLPKITLT 120
PK+++
Sbjct: 180 YYPKVSVV 187
>gi|340517857|gb|EGR48100.1| predicted protein [Trichoderma reesei QM6a]
Length = 375
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CEQ ++ L KCT E KV+ +D+ V G + S PI
Sbjct: 104 CEQCSVSLTLHAKCTSD-------------EIMKVYARDL--VVDGRHANSVGS----PI 144
Query: 72 HDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D LIAKLR E+ +T A K I ++HAK+ P + + P L
Sbjct: 145 ITDPDGLGCLIAKLRKDQELKITCIAKKGIAKEHAKWMPTSAVGFEYDPHNKL 197
>gi|227831065|ref|YP_002832845.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|229579946|ref|YP_002838345.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|229581393|ref|YP_002839792.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
gi|259494208|sp|C3MJP7.1|RPOD_SULIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494210|sp|C3NMQ0.1|RPOD_SULIN RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494211|sp|C3N8R8.1|RPOD_SULIY RecName: Full=DNA-directed RNA polymerase subunit D
gi|227457513|gb|ACP36200.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|228010661|gb|ACP46423.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|228012109|gb|ACP47870.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
Length = 265
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>gi|406859740|gb|EKD12803.1| RNA polymerase II subunit 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 334
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE ++ L+ +CT E KV+ +D+ P ++ + Y + V
Sbjct: 101 CELCSVVLSLQARCTSE-------------EIMKVYARDLVVDP--NRANQYVGNPVITD 145
Query: 72 HDDI--LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
D + +I KLR G E+ + A K I ++HAK++PV+ + P L
Sbjct: 146 EDGLGTVICKLRQGQELRMRCIAKKGIAKEHAKWAPVSAVAFEYDPNNKL 195
>gi|284998561|ref|YP_003420329.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
gi|284446457|gb|ADB87959.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
Length = 265
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>gi|342882719|gb|EGU83319.1| hypothetical protein FOXB_06170 [Fusarium oxysporum Fo5176]
Length = 340
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GP 70
CEQ ++ L KCT E KV+ +D+ V G + S + P
Sbjct: 104 CEQCSVTLTLHAKCTSD-------------EIMKVYARDL--VVDGRHMNGVGSPVITDP 148
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LIAKLR G E+ ++ A K I ++HAK+ P + + P L
Sbjct: 149 EGYGCLIAKLRKGQELKISCIAKKGIAKEHAKWMPTSAVGFEYDPHNKL 197
>gi|50290755|ref|XP_447810.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527121|emb|CAG60759.1| unnamed protein product [Candida glabrata]
Length = 312
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ +T A K I ++HAK+ P A + P
Sbjct: 142 VLICKLRKGQELKLTCIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|410074507|ref|XP_003954836.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
gi|372461418|emb|CCF55701.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
Length = 312
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ +T A K I ++HAK+ P A + P
Sbjct: 142 VLICKLRKGQELKLTCIAKKGISKEHAKWCPAAAIEFEYDP 182
>gi|358365833|dbj|GAA82455.1| RNA polymerase II subunit 3 [Aspergillus kawachii IFO 4308]
Length = 338
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--GPIHDDILIAKLR 81
+C+ + S DD+ +V+ +D+ V G + + + + V P + LI KLR
Sbjct: 101 RCSVTLSLHARCTGDDIM---RVYARDL--VVSGERANEWVGNPVILDPEGNGPLICKLR 155
Query: 82 PGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G E+ +T A K I ++HAK+ P + + P L
Sbjct: 156 RGQELKMTCIAKKGIAKEHAKWMPTSAIGFEYDPHNNL 193
>gi|429857950|gb|ELA32787.1| RNA polymerase ii subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 340
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ +++ L +C+ E KV+ D+ G + + P
Sbjct: 101 CDNCSVKLTLHARCSSD-------------ETMKVYASDLIVDSFRQNGTVGNPVIMDPE 147
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LIAKLR G E+ ++ A K I ++HAK+ P A + P L
Sbjct: 148 GQGSLIAKLRKGQELKLSCIAKKGIAKEHAKWMPTAAVGFEYDPHNKL 195
>gi|160331749|ref|XP_001712581.1| rpb3 [Hemiselmis andersenii]
gi|159766030|gb|ABW98256.1| rpb3 [Hemiselmis andersenii]
Length = 307
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + + +F L I K S+ + + +K F + I + S + ++ D PI
Sbjct: 90 CSKCSFKFSLDIYAEKFPQSIFSTDLNTIDKKENFFYQQINPIHYSS---LKETLDQKPI 146
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL-TQEIEGEMAQR 130
LI KL G I + A K IG++HAK+SP++ + +P +EI ++ +
Sbjct: 147 ----LIGKLGIGQRIKLVAIAKKGIGKEHAKWSPISVIKIKKIPFFLFDLKEINKKINSK 202
Query: 131 LQTMFS---PGVISIEKKPN 147
+ S P + EK N
Sbjct: 203 TKEKISQILPNLFIFEKSKN 222
>gi|145231693|ref|XP_001399321.1| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus niger CBS
513.88]
gi|134056224|emb|CAK37482.1| unnamed protein product [Aspergillus niger]
gi|350634315|gb|EHA22677.1| hypothetical protein ASPNIDRAFT_52135 [Aspergillus niger ATCC 1015]
Length = 338
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--GPIHDDILIAKLR 81
+C+ + S DD+ +V+ +D+ V G + + + + V P + LI KLR
Sbjct: 101 RCSVTLSLHARCTGDDIM---RVYARDL--VVSGERANEWVGNPVILDPEGNGPLICKLR 155
Query: 82 PGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
G E+ +T A K I ++HAK+ P + + P L
Sbjct: 156 RGQELKMTCIAKKGIAKEHAKWMPTSAIGFEYDPHNNL 193
>gi|337283749|ref|YP_004623223.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
gi|334899683|gb|AEH23951.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
Length = 259
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P+ DI I KL G + +A G+DHAK+ P A+Y+ KI +++ I G
Sbjct: 110 DVKPVTPDIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP-GFAYYKYYTKIHISKSIPG 167
>gi|154310335|ref|XP_001554499.1| RNA polymerase II subunit 3 [Botryotinia fuckeliana B05.10]
gi|347828820|emb|CCD44517.1| similar to DNA-directed RNA polymerase II subunit RPB3 [Botryotinia
fuckeliana]
Length = 336
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 33/118 (27%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDI--------QWV--PIGSQGD 61
CE ++ L +CT E KV+ +D+ +WV P+ + D
Sbjct: 101 CELCSVTLTLHARCTGD-------------EIMKVYARDLVVDPQRANKWVGNPVITDPD 147
Query: 62 MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+GP+ IAKLR G E+ + A+K I ++HAK++P A + P L
Sbjct: 148 -----GLGPV-----IAKLRKGQELRMKCIALKGIAKEHAKWAPTAAVGFEYDPHNKL 195
>gi|395332694|gb|EJF65072.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 410
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 32/124 (25%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM--YKSSDVG 69
C+ ++ QL + C ++ + H + + ++ VP G Y + D G
Sbjct: 95 CQYCAIELQLNVACHEANTTMH------------ITSNMLEVVPTNKPGSYGSYDTDDGG 142
Query: 70 ------------PIHDD------ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
PI D ILI K+R G E+ V A K I ++HAK+SP + +
Sbjct: 143 EELAKRVENFGHPIGKDDPDVPPILICKIRMGQELRVRCIAKKGIAKEHAKWSPCSAVAF 202
Query: 112 RLLP 115
P
Sbjct: 203 EYDP 206
>gi|156055988|ref|XP_001593918.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980]
gi|154703130|gb|EDO02869.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 335
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 33/118 (27%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDI--------QWV--PIGSQGD 61
CE ++ L +CT E KV+ +D+ +WV P+ + D
Sbjct: 101 CELCSVTLTLHARCTGD-------------EIMKVYARDLVVDPQRANKWVGNPVITDPD 147
Query: 62 MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+GP+ IAKLR G E+ + A+K I ++HAK++P A + P L
Sbjct: 148 -----GLGPV-----IAKLRKGQELRMKCIALKGIAKEHAKWAPTAAVGFEYDPHNKL 195
>gi|315229895|ref|YP_004070331.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
gi|315182923|gb|ADT83108.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
Length = 258
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DV P+ +I I KL G ++ + +A G+DHAK+ P A+Y+ L +I +++E+
Sbjct: 109 DVKPVTPNIPIVKLAEGQKLTLNAYAKLGRGKDHAKWQP-GFAYYKYLTEIHVSKEV 164
>gi|393217477|gb|EJD02966.1| insert subdomain of RNA polymerase alpha subunit [Fomitiporia
mediterranea MF3/22]
Length = 284
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI K+RPG +I A K I ++HAK+SP + + P
Sbjct: 159 VLICKMRPGQQIKARCIAKKGIAKEHAKWSPCSAVAFEYDP 199
>gi|71031829|ref|XP_765556.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68352513|gb|EAN33273.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 354
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 12 CEQDTLQFQLKIKCTKSAS--FSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
C + T+ + L + C S S +H D ++ K++ +PI + D+ ++
Sbjct: 96 CAKCTVDYTLDVSCKDSDSRVVTHFDIVPDDTHSKSIYGKNLP-MPI-PRADV---TNFN 150
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
D I I KL+ GH I++ + A K +G+ HAK+ VA Y++ P+ + + +++
Sbjct: 151 GATDGIPIVKLKRGHSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSSLMEQLS 208
>gi|322710646|gb|EFZ02220.1| RNA polymerase II subunit 3 [Metarhizium anisopliae ARSEF 23]
Length = 362
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 26/110 (23%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG-P 70
CEQ ++ L +CT E KV+ +D+ D +S VG P
Sbjct: 112 CEQCSVTLTLHARCTSD-------------EIMKVYARDLI-------VDGRHASQVGTP 151
Query: 71 IHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ +D LIAKLR E+ +T A K I ++HAK+ P + + P
Sbjct: 152 VINDPEGMGCLIAKLRKDQELKLTCIAKKGIAKEHAKWMPTSAVGFEYDP 201
>gi|322701809|gb|EFY93557.1| RNA polymerase II subunit 3 [Metarhizium acridum CQMa 102]
Length = 362
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 26/110 (23%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG-P 70
CEQ ++ L +CT E KV+ +D+ D +S VG P
Sbjct: 112 CEQCSVTLTLHARCTSD-------------EIMKVYARDLI-------VDGRHASQVGTP 151
Query: 71 IHDD-----ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ +D LIAKLR E+ +T A K I ++HAK+ P + + P
Sbjct: 152 VINDPEGMGCLIAKLRKDQELKLTCIAKKGIAKEHAKWMPTSAVGFEYDP 201
>gi|389860853|ref|YP_006363093.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
gi|388525757|gb|AFK50955.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
Length = 282
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 60 GDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ DV P+++ I I +L I + +A GR+H K+SP + A ++ + KI
Sbjct: 116 GDLVTGDPDVRPVYEKIPIVQLLENQRIKLEAYARLGRGREHIKWSPASVASHKYIAKIN 175
Query: 119 LTQE 122
+ +E
Sbjct: 176 IDRE 179
>gi|237823480|pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823493|pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823508|pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462791|pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462806|pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260745|pdb|4AYB|D Chain D, Rnap At 3.2ang
gi|400260762|pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260781|pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814435|gb|ACL36491.1| RNA polymerase subunit 3 [Sulfolobus shibatae B12]
Length = 265
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IDCTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>gi|341582027|ref|YP_004762519.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
gi|340809685|gb|AEK72842.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
Length = 260
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 60 GDMYKSSDVG--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ KSSD G P + +I I KL G + +A G+DHAK+ P +Y+ L +I
Sbjct: 103 GDL-KSSDEGVKPANPNIPIVKLAEGQRLTFNAYAKLGRGKDHAKWQP-GFVYYKYLTRI 160
Query: 118 TLTQEIEG-----EMAQR 130
+++E+ E+A+R
Sbjct: 161 HVSKEVPDWKELKELAER 178
>gi|393246178|gb|EJD53687.1| insert subdomain of RNA polymerase alpha subunit [Auricularia
delicata TFB-10046 SS5]
Length = 380
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LIAKLR G E+ + A K + ++HAK+SP A + P
Sbjct: 162 VLIAKLRKGQELKLRCIAKKGVAKEHAKWSPCAAVSFEYDP 202
>gi|398411480|ref|XP_003857078.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
gi|339476963|gb|EGP92054.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
Length = 361
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDDI----------------LIAKLRPGHEIDV 88
KVF +D+ +V G+ +S+ +G D++ LI +LR G EI +
Sbjct: 125 KVFARDL-FVESGANAGYNRSNGMGNSSDELPERGRPIVMDRDNQGPLICQLRRGQEIKL 183
Query: 89 TMFAVKSIGRDHAKFSPVATAFYRLLP 115
A K I ++HAK++P A + P
Sbjct: 184 KCIARKGIAKEHAKWAPTAAIGFEYDP 210
>gi|425774142|gb|EKV12459.1| RNA polymerase II subunit 3 [Penicillium digitatum PHI26]
gi|425778395|gb|EKV16523.1| RNA polymerase II subunit 3 [Penicillium digitatum Pd1]
Length = 335
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LI KLR G EI +T A K ++HAK++P A + P L
Sbjct: 149 LICKLRKGQEIKMTCLAKKGTAKEHAKWAPTAAVGFEYDPNNNL 192
>gi|346972452|gb|EGY15904.1| DNA-directed RNA polymerase II subunit RPB3 [Verticillium dahliae
VdLs.17]
Length = 342
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LIAKLR G E+ VT A K I ++HAK+ P + + P
Sbjct: 152 LIAKLRRGQELKVTCIAKKGIAKEHAKWMPTSAVGFEYDP 191
>gi|327303580|ref|XP_003236482.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
gi|326461824|gb|EGD87277.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
Length = 351
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + L KCT E KV+ +D+ V +G + + + + V
Sbjct: 100 CARCVINLSLHAKCTTE-------------EIMKVYARDL--VVVGDRANEWVGNPVVTD 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ K I ++HAK++P A + P L
Sbjct: 145 PEGKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDPHNNL 194
>gi|403217190|emb|CCK71685.1| hypothetical protein KNAG_0H02700 [Kazachstania naganishii CBS
8797]
Length = 326
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
++ +LI KLR G E+ +T A K I ++HAK+ P + + P
Sbjct: 139 NNGVLICKLRKGQELKMTCIAKKGIAKEHAKWGPTSAIEFEYDP 182
>gi|260950839|ref|XP_002619716.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
gi|238847288|gb|EEQ36752.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
Length = 307
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQ-GDMYKSSDVGP 70
C +++ +L KC ++ + V++ D+ GS+ GD P
Sbjct: 96 CPNCSVKLELTAKCDSDSTMN-------------VYSSDLAKFHNGSKLGDPVIRD---P 139
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
H LI KLR E+ +T A K I ++HAK+SP A + P
Sbjct: 140 AHRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFEYDP 184
>gi|367000601|ref|XP_003685036.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
gi|357523333|emb|CCE62602.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
Length = 310
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ T A K I ++HAK+ P A + P
Sbjct: 142 VLICKLRKGQELKFTCIAKKGIAKEHAKWGPAAAIEFEYDP 182
>gi|389741508|gb|EIM82696.1| insert subdomain of RNA polymerase alpha subunit [Stereum hirsutum
FP-91666 SS1]
Length = 411
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 12 CEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--- 67
C +++ L + C + + S+H D + + + D Q Q + +K D
Sbjct: 96 CSACSVKLHLNVACHDNRTMDITSNHLDVVPHDYTDYAADEQ------QEEFHKRIDTFG 149
Query: 68 --VG---PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
VG P +LI K+R G E+ V A K I ++HAK+SP + + P
Sbjct: 150 HPVGKNDPNVQPVLICKIRKGQELKVRCIAKKGIAKEHAKWSPCSAVSFEYDP 202
>gi|302654573|ref|XP_003019090.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
gi|291182788|gb|EFE38445.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
Length = 351
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + L KCT E KV+ +D+ V +G + + + + V
Sbjct: 100 CARCVINLSLHAKCTTE-------------EIMKVYARDL--VVVGDRANEWVGNPVVTD 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ K I ++HAK++P A + P L
Sbjct: 145 PEGKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDPHNNL 194
>gi|302509162|ref|XP_003016541.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
gi|291180111|gb|EFE35896.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + L KCT E KV+ +D+ V +G + + + + V
Sbjct: 110 CARCVINLSLHAKCTTE-------------EIMKVYARDL--VVVGDRANEWVGNPVVTD 154
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ K I ++HAK++P A + P L
Sbjct: 155 PEGKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDPHNNL 204
>gi|374628605|ref|ZP_09700990.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
gi|373906718|gb|EHQ34822.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
Length = 274
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 6 RLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMY-K 64
RL P D ++ + +C S + + VFT ++ I GD+ +
Sbjct: 61 RLGLIPITTDLSEYVRRDEC--------SCGGEGCSQCQAVFTLSVEGPGIVMSGDLVPQ 112
Query: 65 SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
+ P++ DI I KL ++ + A + G +HAK+ P Y+ P IT++ +
Sbjct: 113 NPGAVPVNPDIPIVKLDEDQKVVLEARAELNTGMEHAKWQPTLACGYKAYPVITVSDRCD 172
Query: 125 G 125
G
Sbjct: 173 G 173
>gi|392569943|gb|EIW63116.1| hypothetical protein TRAVEDRAFT_17573 [Trametes versicolor
FP-101664 SS1]
Length = 454
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 55 PIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
PIG QGD P ILI K+R G E+ + A K I ++H+K+SP A +
Sbjct: 191 PIG-QGD--------PSTPPILICKIRKGQELRIRCIAKKGIAKEHSKWSPCAAVGFEYD 241
Query: 115 P 115
P
Sbjct: 242 P 242
>gi|328853564|gb|EGG02702.1| hypothetical protein MELLADRAFT_72730 [Melampsora larici-populina
98AG31]
Length = 359
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 24/113 (21%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG-P 70
C+ +++ L +K T E +V +KD+ P GD DVG P
Sbjct: 107 CDDCSIELVLSVKSTLPG------------ETLEVTSKDLVITPREDGGD---RGDVGKP 151
Query: 71 IH--------DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ +LI KLR G E+ + A+K I ++HAK+S V+T + P
Sbjct: 152 VQFTLPNGEQPGVLITKLRKGQEVKLKCRAIKGIAQEHAKWSAVSTIGFEYDP 204
>gi|240278194|gb|EER41701.1| RNA polymerase II subunit 3 [Ajellomyces capsulatus H143]
Length = 333
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+I KLR G EI +T A K I ++HAK++P A + P L
Sbjct: 9 VICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDPHNNL 52
>gi|390960760|ref|YP_006424594.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
gi|390519068|gb|AFL94800.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
Length = 260
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 60 GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ +SSD + P + DI I KL G + +A G+DHAK+ P +Y+ L +I
Sbjct: 103 GDL-RSSDEAIKPANPDIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP-GFVYYKYLTRI 160
Query: 118 TLTQEI 123
+++E+
Sbjct: 161 HVSKEV 166
>gi|255932027|ref|XP_002557570.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582189|emb|CAP80362.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 335
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LI KLR G E+ +T A K ++HAK++P A + P L
Sbjct: 149 LICKLRKGQEVKMTCLAKKGTAKEHAKWAPTAAVGFEYDPNNNL 192
>gi|13124813|sp|O59303.2|RPOD_PYRHO RecName: Full=DNA-directed RNA polymerase subunit D
Length = 259
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P+ DI I KL G + +A G+DHAK+ P T +Y+ ++ ++++I G
Sbjct: 110 DVKPVTPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQPGFT-YYKYFTRVHISKKING 167
>gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit D [Pyrococcus horikoshii OT3]
gi|3258066|dbj|BAA30749.1| 261aa long hypothetical DNA-directed RNA polymerase subunit D
[Pyrococcus horikoshii OT3]
Length = 261
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P+ DI I KL G + +A G+DHAK+ P T +Y+ ++ ++++I G
Sbjct: 112 DVKPVTPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQPGFT-YYKYFTRVHISKKING 169
>gi|45187753|ref|NP_983976.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|44982514|gb|AAS51800.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|374107190|gb|AEY96098.1| FADL120Cp [Ashbya gossypii FDAG1]
Length = 311
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGHEIDVTMFAVKSIGRD 99
V+ KD+Q V D+ + PI D +LI KLR G E+ + A K I ++
Sbjct: 112 NVYAKDLQIV-----SDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVAKKGIAKE 166
Query: 100 HAKFSPVATAFYRLLP 115
HAK+SP A + P
Sbjct: 167 HAKWSPAAAIEFEYDP 182
>gi|119481479|ref|XP_001260768.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
gi|119408922|gb|EAW18871.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
Length = 336
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LI KLR G E+ +T A K I ++HAK++P A + P L
Sbjct: 150 LICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNL 193
>gi|57641438|ref|YP_183916.1| DNA-directed RNA polymerase subunit D [Thermococcus kodakarensis
KOD1]
gi|73917880|sp|Q5JJF4.1|RPOD_PYRKO RecName: Full=DNA-directed RNA polymerase subunit D
gi|57159762|dbj|BAD85692.1| DNA-directed RNA polymerase, subunit D [Thermococcus kodakarensis
KOD1]
Length = 259
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 60 GDMYKS-SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ S DV P + +I I KL G + +A G+DHAK+ P +Y+ L KI
Sbjct: 102 GDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP-GFVYYKYLTKIH 160
Query: 119 LTQEIEG-----EMAQR 130
+++++ E+A+R
Sbjct: 161 VSKDVPDWEELKELAER 177
>gi|71001920|ref|XP_755641.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|66853279|gb|EAL93603.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|159129698|gb|EDP54812.1| RNA polymerase II subunit 3 [Aspergillus fumigatus A1163]
Length = 392
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
LI KLR G E+ +T A K I ++HAK++P A + P L
Sbjct: 206 LICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNL 249
>gi|444324054|ref|XP_004182667.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
gi|387515715|emb|CCH63148.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
Length = 335
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ +T A K I ++HAK+ A Y P
Sbjct: 142 VLICKLRKGQELKMTCVAKKGIAKEHAKWGATAAIEYEYDP 182
>gi|363752075|ref|XP_003646254.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889889|gb|AET39437.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
Length = 311
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGHEIDVTMFAVKSIGRD 99
V+ KD+Q V D+ + PI D IL+ KLR G E+ + A K I ++
Sbjct: 112 NVYAKDLQIV-----SDLGGKNIGHPIIQDKEANGILVCKLRKGQELRLKCVAKKGISKE 166
Query: 100 HAKFSPVATAFYRLLP 115
HAK+SP A + P
Sbjct: 167 HAKWSPAAAIEFEYDP 182
>gi|225684781|gb|EEH23065.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb03]
Length = 283
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--- 68
C + + L ++CT + KV+ +D+ + +G + + + S V
Sbjct: 101 CARCVVMLSLNVRCTGE-------------DVMKVYARDL--IIVGDRANEWVGSPVITD 145
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
GP+ I KL G E+ +T A K I ++H+K++P A + P L
Sbjct: 146 AEGKGPV-----ICKLSRGQELKMTCIAKKGIAKEHSKWAPTAAVGFEYDPHNNL 195
>gi|121715950|ref|XP_001275584.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
gi|119403741|gb|EAW14158.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
Length = 333
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + ++ L +CT E V+ +D+ V G + + + + V
Sbjct: 99 CARCSVTLTLHARCTGD-------------EIMPVYARDL--VVTGERANEWVGTPVLTD 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P LI KLR G E+ +T A K + ++HAK++P A + P L
Sbjct: 144 PEGKGSLICKLRRGQELKMTCIAKKGMAKEHAKWAPTAAVGFEYDPHNNL 193
>gi|353235564|emb|CCA67575.1| related to RPB3-DNA-directed RNA polymerase II chain
[Piriformospora indica DSM 11827]
Length = 336
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
ILIA LR G E+ + A K I +DHAK+SP + P
Sbjct: 153 ILIASLRKGQELKIRCEAKKGIAKDHAKWSPCTALGFEYDP 193
>gi|392593588|gb|EIW82913.1| insert subdomain of RNA polymerase alpha subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 418
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P +LI K+R G E+ + A K I ++HAK+SP + + P
Sbjct: 157 PSAQPVLICKMRKGQELRIKCIAKKGIAKEHAKWSPCSAVAFEYDP 202
>gi|429328829|gb|AFZ80589.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 355
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIG-SQGDMYKSSDVGP 70
C + T+ + L + C + S +H D + ++ ++ + D + +P+ + D+ S+
Sbjct: 96 CAKCTVDYTLDVSCDDADS-KVVTHFDIIADEAEINSNDERKIPMPIPRADI---SNFNG 151
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI----TLTQEIEGE 126
D I I KL+ G I + + A K +G+ HAK+ VA Y++ P+ +L ++I E
Sbjct: 152 ATDGIPIVKLKRGQSISMKLTATKGLGKFHAKWI-VANVNYKMEPRFLFNSSLMEQISSE 210
>gi|255714803|ref|XP_002553683.1| KLTH0E04598p [Lachancea thermotolerans]
gi|238935065|emb|CAR23246.1| KLTH0E04598p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ + A K I ++HAK+SP A + P
Sbjct: 142 VLICKLRKGQELKLKCVAKKGISKEHAKWSPAAAIEFEYDP 182
>gi|146169387|ref|XP_001471367.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila]
gi|116575|sp|P16925.1|CNJC_TETTH RecName: Full=Conjugation stage-specific protein
gi|2654270|emb|CAA44194.1| RNA polymerase subunit [Tetrahymena thermophila]
gi|146145111|gb|EDK31657.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila
SB210]
Length = 310
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
I I KL G +I A K IG+ H+K++PV + + + P+I QEI+
Sbjct: 149 IPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQN 199
>gi|385305361|gb|EIF49344.1| dna-directed rna polymerase ii 45 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 268
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE+ ++ QLK +C + + +Y H V + + ++ + P
Sbjct: 56 CEKCSVTLQLKARCDSDETMN-------VYSSHLVV------ISANTGLNLGQPVIRDPQ 102
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KL+ E+++ A K I ++HAK+SP + + P
Sbjct: 103 KKGVLICKLKRHQELNIVCIAKKGIAKEHAKWSPCSAIGFEYDP 146
>gi|226286652|gb|EEH42165.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb18]
Length = 352
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--- 68
C + + L ++CT + KV+ +D+ + +G + + + S V
Sbjct: 101 CARCVVMLSLNVRCTGE-------------DVMKVYARDL--IIVGDRANEWVGSPVITD 145
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
GP+ I KL G E+ +T A K I ++H+K++P A + P L
Sbjct: 146 AEGKGPV-----ICKLSRGQELKMTCIAKKGIAKEHSKWAPTAAVGFEYDPHNNL 195
>gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|284173382|ref|ZP_06387351.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus 98/2]
gi|384433538|ref|YP_005642896.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
gi|2500627|sp|P95989.1|RPOD_SULSO RecName: Full=DNA-directed RNA polymerase subunit D
gi|167013264|pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744884|pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744895|pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782146|pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782159|pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|1707823|emb|CAA69531.1| DNA-directed RNA polymerase subunit D [Sulfolobus solfataricus P2]
gi|13813203|gb|AAK40433.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|261601692|gb|ACX91295.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
Length = 265
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ E +++KDI KS D V PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEAPNEPRMIYSKDI------------KSEDPSVVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ + R PK+ + E
Sbjct: 131 VLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCE 177
>gi|170092317|ref|XP_001877380.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647239|gb|EDR11483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 304
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
ILI K+R G E+ V A K I ++HAK+SP + + P
Sbjct: 162 ILICKIRKGQELKVKCVAKKGIAKEHAKWSPCSAVSFEYDP 202
>gi|358055923|dbj|GAA98268.1| hypothetical protein E5Q_04951 [Mixia osmundae IAM 14324]
Length = 368
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG-P 70
C++ T+ QL + C + K V +KD+ +P + D G P
Sbjct: 113 CDECTVMLQLDVACRSAG-------------KLDVTSKDLVVLP---RQDGQDRGGFGMP 156
Query: 71 IH---DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ + ILIA+L PG I + A + I DHAK PV+T + P
Sbjct: 157 MSEHSNGILIAQLGPGQRITLLATAHRGIALDHAKHCPVSTVGFEYDP 204
>gi|167517689|ref|XP_001743185.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778284|gb|EDQ91899.1| predicted protein [Monosiga brevicollis MX1]
Length = 276
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
I + I+I KL G I +T FA K G++HAK+ P A + P L
Sbjct: 146 IRNPIVICKLAKGQRIQLTAFAKKGFGKEHAKWCPTAGIAFEYDPDNAL 194
>gi|159041731|ref|YP_001540983.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
gi|157920566|gb|ABW01993.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
Length = 305
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
D P++ D LI K+ G + + +A RDHAK+ ++Y PK+ L +
Sbjct: 122 DFAPVYPDTLIVKMSKGQVLSIEAYAKLGRARDHAKWQACLASYY-YYPKVQLLNPRDER 180
Query: 127 MAQRLQT 133
A L++
Sbjct: 181 CAACLES 187
>gi|339251862|ref|XP_003371154.1| putative biotin--protein ligase [Trichinella spiralis]
gi|316968644|gb|EFV52901.1| putative biotin--protein ligase [Trichinella spiralis]
Length = 798
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 59 QGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
GD S+D+ D + LR G E+ VT A K IG++HAK++P A + P
Sbjct: 103 NGDFATSADLKS--QDSRVVPLRDGQELIVTCVARKGIGKEHAKWNPTAGVGFEYDP 157
>gi|307594234|ref|YP_003900551.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
gi|307549435|gb|ADN49500.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
Length = 302
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
+V P+++DI I KL PG +I + +A R+HAK+ A Y PK+++
Sbjct: 118 EVRPVYEDIPIVKLVPGQKIVLEAYAKLGRARNHAKWQ-AGLASYYYYPKVSVV 170
>gi|399216931|emb|CCF73618.1| unnamed protein product [Babesia microti strain RI]
Length = 324
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + T+ + L++ CT+ F +H D + +++ +P+ GD
Sbjct: 96 CSKCTVDYNLQVTCTEP--FRTVTHLDIIPDEYDTP------LPLPRSGD---------- 137
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
I I K+R I + + A K IG+ HAK+ VA Y++ P + E+ G Q+
Sbjct: 138 --GIPIVKIRRDQSIHLKLTATKGIGKLHAKWV-VANVAYQIEPLFKINSEMMGRTTQQ 193
>gi|295662885|ref|XP_002791996.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279648|gb|EEH35214.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 352
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--- 68
C + + L ++CT + KV+ +D+ + +G + + + S V
Sbjct: 101 CARCIVMLSLNVRCTGE-------------DVMKVYARDL--IIVGDRANEWVGSPVITD 145
Query: 69 ----GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
GP+ I KL G E+ +T A K I ++H+K++P A + P L
Sbjct: 146 AEGKGPV-----ICKLSRGQELKMTCIAKKGIAKEHSKWAPTAAVGFEYDPHNNL 195
>gi|326469671|gb|EGD93680.1| RNA polymerase II subunit 3 [Trichophyton tonsurans CBS 112818]
gi|326478798|gb|EGE02808.1| RNA polymerase II subunit 3 [Trichophyton equinum CBS 127.97]
Length = 351
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + L KCT + KV+ +D+ V +G + + + + V
Sbjct: 100 CARCVINLSLHAKCTTE-------------DIMKVYARDL--VVVGDRANEWVGNPVVTD 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ K I ++HAK++P A + P L
Sbjct: 145 PEGKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDPHNNL 194
>gi|50555259|ref|XP_505038.1| YALI0F05566p [Yarrowia lipolytica]
gi|49650908|emb|CAG77845.1| YALI0F05566p [Yarrowia lipolytica CLIB122]
Length = 314
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 24 KCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPG 83
KC+ + DD + ++++D+ + ++ K P ILI KLR
Sbjct: 87 KCSVVLMLDATCTGDDTMD---IYSRDLMVHTTPERPELGKPIYTDPAKKGILICKLRKN 143
Query: 84 HEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ + A K I ++HAK+SP A + P
Sbjct: 144 QSLRIKCIAKKGIAKEHAKWSPCAAIGFEYDP 175
>gi|380478665|emb|CCF43467.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 339
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ +++ L +C+ E KV+ D+ G + + P
Sbjct: 101 CDNCSVKLTLHARCSSD-------------ETMKVYASDLIVDSFRQNGTVGNPVILDPE 147
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LI KLR G E+ ++ A K I ++HAK+ P + + P
Sbjct: 148 GQGSLICKLRKGQELKISCIAKKGIAKEHAKWMPTSAVGFEYDP 191
>gi|315050740|ref|XP_003174744.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
gi|311340059|gb|EFQ99261.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
Length = 369
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV--G 69
C + + L KCT + KV+ +D+ V +G + + + + V
Sbjct: 118 CARCVINLSLHAKCTSE-------------DIMKVYARDL--VVVGDRANEWVGNPVVTD 162
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
P +I KLR G E+ K I ++HAK++P A + P L
Sbjct: 163 PEGKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDPHNNL 212
>gi|84999910|ref|XP_954676.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305671|emb|CAI73996.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
Length = 354
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 12 CEQDTLQFQLKIKCTKSAS--FSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
C + T+ + L + C S S +H D ++ K++ +PI + D+ ++
Sbjct: 96 CAKCTVDYTLDVSCNDSNSRLVTHFDIVPDDTHSKSIYGKNLP-MPI-PRADV---TNFN 150
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
D I I KL+ G I++ + A K +G+ HAK+ VA Y++ P+ + + +++
Sbjct: 151 GATDGIPIVKLKRGQSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSALMEQLS 208
>gi|150401521|ref|YP_001325287.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
gi|150014224|gb|ABR56675.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
Length = 197
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP--KI 117
D+ SD D+I I KL+ G ++++ A+ +G++HAK+ P A Y+L+ ++
Sbjct: 96 ADLESESDSMVAFDNIPIVKLKEGQKLELECEALVGVGKNHAKWQP-CNASYKLIKDNEV 154
Query: 118 TLTQEIEGEM 127
+ E G+M
Sbjct: 155 EFSVESHGQM 164
>gi|403414765|emb|CCM01465.1| predicted protein [Fibroporia radiculosa]
Length = 387
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI K+R G E+ V A K I ++HAK+SP + + P
Sbjct: 148 VLICKIRKGQELKVRCIAKKGIAKEHAKWSPCSAVAFEYDP 188
>gi|161899301|ref|XP_001712877.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
gi|75756371|gb|ABA27265.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
Length = 293
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 17 LQFQLKIKCTKSASFS------HSSHADDMYEKHKVFTKDIQWVPIGS----QGDMYKS- 65
+QFQ K+ C K + S +S+ + +F KD + GS Q +Y S
Sbjct: 101 IQFQ-KMYCLKDQTNSVVLILKNSNFCNSFRLTKDIFCKDFSYRRYGSLIPHQSRVYFSI 159
Query: 66 ------SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFY 111
+ +DILI KL+P + + K H+K+SPVA A+Y
Sbjct: 160 KQDIVKKNSFLTFEDILITKLKPKQLLFLEAHCKKGYSTQHSKYSPVAAAWY 211
>gi|310831472|ref|YP_003970115.1| putative DNA-dependent RNA polymerase subunit Rpb3/Rpb11 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386656|gb|ADO67516.1| putative DNA-dependent RNA polymerase subunit Rpb3/Rpb11 [Cafeteria
roenbergensis virus BV-PW1]
Length = 325
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 46 VFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
V T D Q+ +GS+ P + ++I KL+PG +I +T +V I ++ K+SP
Sbjct: 143 VTTNDAQFYYLGSEIK-------SPYPNPVIIIKLQPGQKIKLTAKSVLGIEKEDGKYSP 195
Query: 106 VATAFYR 112
V+ Y
Sbjct: 196 VSVCAYN 202
>gi|342180433|emb|CCC89910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 392
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ + L E+D+ + KSI + HAKF PV+T R P++ L +++
Sbjct: 198 VWLLTLGRSQELDLRILIRKSIAKAHAKFMPVSTVSMRYAPEVVLNEDV 246
>gi|409096145|ref|ZP_11216169.1| DNA-directed RNA polymerase subunit D [Thermococcus zilligii AN1]
Length = 260
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 60 GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ KS D + P + +I I KL G ++ + +A G+DHAK+ P +Y+ L +I
Sbjct: 103 GDL-KSDDPEIKPANPNIPIVKLAEGQKLALNAYARLGRGKDHAKWQP-GFVYYKYLTRI 160
Query: 118 TLTQEI 123
+++E+
Sbjct: 161 HVSKEV 166
>gi|242214615|ref|XP_002473129.1| predicted protein [Postia placenta Mad-698-R]
gi|220727790|gb|EED81699.1| predicted protein [Postia placenta Mad-698-R]
Length = 265
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LIAK+R G E+ + A K + ++HAK+SP + + P
Sbjct: 144 VLIAKIRKGQELRLRCIAKKGVAKEHAKWSPCSAVAFEYDP 184
>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
Length = 281
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 25 CTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMY----KSSD--VGPIHDDILIA 78
C K S S D+ EK V ++ V S+ +Y KS D V P++ +I I
Sbjct: 84 CYKCGSDSEDKPPSDVCEKCYVHMF-LEAVAEDSEYTVYSSDIKSEDEFVKPVYGNIPIV 142
Query: 79 KLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
L PG I + + A G +H K+SP A R + I +++++
Sbjct: 143 ILSPGQRISLELRARVGRGIEHIKWSPATIAVTRYVADIRISEDL 187
>gi|392574290|gb|EIW67427.1| hypothetical protein TREMEDRAFT_45370 [Tremella mesenterica DSM
1558]
Length = 361
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
P IL+AKL G EID+T A I + HAK+SP++ + P
Sbjct: 178 PATPPILLAKLSRGQEIDLTCKAYSGIAKFHAKWSPLSAVAFEYDP 223
>gi|367017650|ref|XP_003683323.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
gi|359750987|emb|CCE94112.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
Length = 311
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+LI KLR G E+ + A K I ++HAK+ P A + P
Sbjct: 142 VLICKLRKGQELSMKCVAKKGISKEHAKWGPAAAIEFEYDP 182
>gi|212223251|ref|YP_002306487.1| DNA-directed RNA polymerase subunit D [Thermococcus onnurineus NA1]
gi|212008208|gb|ACJ15590.1| DNA-directed RNA polymerase, subunit D [Thermococcus onnurineus
NA1]
Length = 260
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 60 GDMYKSSDVG--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ KS D G P + +I I KL G + + +A G+DHAK+ P +Y+ L KI
Sbjct: 103 GDL-KSDDEGVKPANPNIPIVKLAEGQNLTLNAYAKLGRGKDHAKWQP-GFVYYKYLTKI 160
Query: 118 TLTQEI 123
+++++
Sbjct: 161 HVSKDV 166
>gi|257388632|ref|YP_003178405.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
gi|257170939|gb|ACV48698.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
Length = 259
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 60 GDMYKS-SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ S S VGP D+I I L+ G ++V AV GR+HAK YR L ++
Sbjct: 99 GDLVSSDSLVGPADDNIPIIDLKDGQRLEVEADAVLDRGREHAKHQGGVAVGYRHLQRVE 158
Query: 119 LT 120
+
Sbjct: 159 VV 160
>gi|432329920|ref|YP_007248063.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
gi|432136629|gb|AGB01556.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
Length = 276
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 62 MYKSSDV-------GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
M SSD+ P++D+I I KL G ++ + A+ + GR HAK+ Y+
Sbjct: 103 MVTSSDLIPQDPGAAPVYDNIPIVKLTKGQKLVIEARAILNTGRAHAKWQSTLVCGYKNH 162
Query: 115 PKITLT 120
P IT++
Sbjct: 163 PVITVS 168
>gi|156097458|ref|XP_001614762.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148803636|gb|EDL45035.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 333
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + T+Q+ +++KC + + H + E VP+ + + S+
Sbjct: 96 ETCSKCTIQYLIQVKCNNVSKIEITHHDIESVEHEPNVP---MPVPLEDRNNQMAESNAI 152
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
PI L + + + A K IG+ HAK+ P A YR+ K+ + + +++
Sbjct: 153 PI------VTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYRIDHKVAIKHHLINSLSR 205
Query: 130 RLQTMFSPGV 139
+ + + +
Sbjct: 206 EHKLLLANSL 215
>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [Methanocella arvoryzae
MRE50]
gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [Methanocella arvoryzae
MRE50]
Length = 262
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 64 KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
KSSD P+ ++I I +L+ G ++ + A ++HAK+ PV A Y+ +P +T++
Sbjct: 110 KSSDPETVPVDNNIPIIELKQGQKVVASGTARLGFTKEHAKYQPVCAAGYKNVPIVTVSD 169
Query: 122 EIE 124
+ +
Sbjct: 170 KCD 172
>gi|154151761|ref|YP_001405379.1| DNA-directed RNA polymerase subunit D [Methanoregula boonei 6A8]
gi|154000313|gb|ABS56736.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 276
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
P+ D+I I KL G ++ + AV + G+ HAK+ P Y+ P IT++
Sbjct: 117 APVSDNIPIVKLIKGQKLVIEARAVLNKGKVHAKWQPTLVCGYKNYPVITIS 168
>gi|223477958|ref|YP_002582352.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
gi|214033184|gb|EEB74012.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
Length = 260
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 60 GDMYKSSDVG--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ KS D G P + +I I KL G ++ +A G+DHAK+ P +Y+ L +I
Sbjct: 103 GDL-KSDDEGVKPANPNIPIVKLAEGQKLTFNAYARLGRGKDHAKWQP-GFVYYKYLTEI 160
Query: 118 TLTQEIEG-----EMAQR 130
+++E+ E+A+R
Sbjct: 161 HVSKEVPDWEELKELAER 178
>gi|240104023|ref|YP_002960332.1| DNA-directed RNA polymerase subunit D [Thermococcus gammatolerans
EJ3]
gi|239911577|gb|ACS34468.1| DNA-directed RNA polymerase subunit D (rpoD) [Thermococcus
gammatolerans EJ3]
Length = 260
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 60 GDMYKSSDVG--PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
GD+ KS D G P + +I I KL G ++ +A G+DHAK+ P +Y+ L +I
Sbjct: 103 GDL-KSDDEGVKPANPNIPIVKLAEGQKLTFNAYAKLGRGKDHAKWQP-GFVYYKYLTEI 160
Query: 118 TLTQEIEG-----EMAQR 130
+++E+ E+A+R
Sbjct: 161 HVSKEVPDWEELKELAER 178
>gi|406698967|gb|EKD02188.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 378
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 54 VPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRL 113
VP+G +GD P I +A++ G EI+V A K I + HAK+SP++ Y
Sbjct: 179 VPVG-KGD--------PTASPIQLARISRGQEIEVVCKAYKGIAKHHAKWSPLSAVAYEY 229
Query: 114 LP 115
P
Sbjct: 230 DP 231
>gi|241954894|ref|XP_002420168.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223643509|emb|CAX42390.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 313
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LI KLR E+ +T A K I ++HAK+SP A + P
Sbjct: 145 LICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFEYDP 184
>gi|68478788|ref|XP_716556.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|68478891|ref|XP_716500.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438227|gb|EAK97561.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|238881321|gb|EEQ44959.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida albicans
WO-1]
Length = 318
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 76 LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LI KLR E+ +T A K I ++HAK+SP A + P
Sbjct: 145 LICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFEYDP 184
>gi|349806155|gb|AEQ18550.1| putative polymerase i polypeptide subunit [Hymenochirus curtipes]
Length = 159
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 12 CEQDTLQFQLKIKCTKSASFS-HSSHADDMYEKHKVFT 48
E DTLQF+L +KCT++ S SS +++Y +KV+T
Sbjct: 122 TEIDTLQFELNVKCTRNPRASKDSSDPNELYLNYKVYT 159
>gi|242398333|ref|YP_002993757.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
gi|242264726|gb|ACS89408.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
Length = 271
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DV P++ +I I KL G + +A G+DHAK+ P A Y+ L ++ +++E+
Sbjct: 122 DVKPVNPNIPIVKLAEGQRLVFNAYAKMGKGKDHAKWQP-GFAHYKYLTEVHVSKEV 177
>gi|156082852|ref|XP_001608910.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154796160|gb|EDO05342.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 382
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEM 127
I I KL+ G + + M A K +G+ HAK+ VA Y++ P IT+ +++ +M
Sbjct: 195 IPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQVAEKM 246
>gi|310794498|gb|EFQ29959.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 339
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+ +++ L +C+ +DD KV+ D+ G + + P
Sbjct: 101 CDNCSVKLTLHARCS----------SDDTM---KVYASDLIVDSFRQNGTVGNPVILDPE 147
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LI KLR G E+ ++ A K I ++HAK+ P + + P
Sbjct: 148 GQGSLICKLRKGQELKISCIAKKGIAKEHAKWMPTSAVGFEYDP 191
>gi|401889280|gb|EJT53216.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 378
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 54 VPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRL 113
VP+G +GD P I +A++ G EI+V A K I + HAK+SP++ Y
Sbjct: 179 VPVG-KGD--------PTASPIQLARISRGQEIEVICKAYKGIAKHHAKWSPLSAVAYEY 229
Query: 114 LP 115
P
Sbjct: 230 DP 231
>gi|448337141|ref|ZP_21526223.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
gi|445626487|gb|ELY79830.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
Length = 249
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 50 DIQWVPIGSQGDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
D++ GD+ S D V P +++ I +L+ G ++ AV G+DHAK
Sbjct: 90 DVEGPATAYSGDLVSSDDLVQPADENVPIIELKDGQRLEAEADAVIDRGKDHAKHQGGVA 149
Query: 109 AFYRLLPKITLTQEIEGEMAQ 129
YR L ++ E+EG++ +
Sbjct: 150 VGYRHLQRV----EVEGDLPE 166
>gi|448346280|ref|ZP_21535166.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
gi|445632869|gb|ELY86075.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
Length = 249
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 50 DIQWVPIGSQGDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108
D++ GD+ S D V P +++ I +L+ G ++ AV G+DHAK
Sbjct: 90 DVEGPATAYSGDLVSSDDLVEPADENVPIIELKDGQRLEAEADAVIDRGKDHAKHQGGVA 149
Query: 109 AFYRLLPKITLTQEIEGEMAQ 129
YR L ++ E+EG++ +
Sbjct: 150 VGYRHLQRV----EVEGDLPE 166
>gi|296243119|ref|YP_003650606.1| DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM
11486]
gi|296095703|gb|ADG91654.1| DNA-directed RNA polymerase, subunit D [Thermosphaera aggregans DSM
11486]
Length = 277
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DV P I I KL ++ + +A G++H K+SPV+ A ++ +P I + Q +
Sbjct: 123 DVKPSFGKIPIVKLIKPQKVKLEAYARLGRGKEHIKWSPVSVAAHKYVPNILVNQRL 179
>gi|68070451|ref|XP_677137.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|56497133|emb|CAH93597.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 331
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + T+Q+ +++KC +A+ + SH D H+ +P+ D K++++
Sbjct: 93 ETCSRCTVQYIIEVKCN-NANKINVSHYDIEALDHE------PNIPMPIPND-NKNNNIE 144
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAF 110
+ + I I L I + + A K IG+ HAK+ P ++
Sbjct: 145 KMENAIPIVTLSKNQTIHMKLTATKGIGKMHAKWIPANVSY 185
>gi|171186411|ref|YP_001795330.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
gi|229564213|sp|B1YC30.1|RPOD_THENV RecName: Full=DNA-directed RNA polymerase subunit D
gi|170935623|gb|ACB40884.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
Length = 262
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 60 GDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ + DV P+H DI I KL G I + +A R HAK+ A A Y P++
Sbjct: 110 GDLVSERPDVVPVHKDIPIVKLVKGQSIVLEAYAKLGRARGHAKWQ-AALASYYYYPRVE 168
Query: 119 LTQE 122
+ E
Sbjct: 169 VRDE 172
>gi|72387431|ref|XP_844140.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma brucei
TREU927]
gi|62360648|gb|AAX81059.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei]
gi|70800672|gb|AAZ10581.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327301|emb|CBH10277.1| DNA-directed RNA polymerase II subunit 3,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
+ + L EI++ + KSI + HAKF PV+T R P++ L +++
Sbjct: 138 VWLLTLGRSQEINLRVLIRKSIAKTHAKFMPVSTVSMRYEPEVILNKDV 186
>gi|448409409|ref|ZP_21574707.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
gi|445673012|gb|ELZ25579.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
Length = 255
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 60 GDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ S + V P +D+I I L+ G ++ AV GRDHAK YR L ++
Sbjct: 106 GDIVSSDEMVRPANDNIPIIDLKAGQRLEAEADAVLDRGRDHAKHQGGVAVGYRHLQRVE 165
Query: 119 LTQEIEGEMA 128
+ + +GE A
Sbjct: 166 VVGD-KGEFA 174
>gi|282164928|ref|YP_003357313.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
gi|282157242|dbj|BAI62330.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
Length = 262
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 61 DMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
DM S D P D++ I +L+ ++ +T A G++H+KF PV Y+ +P I +
Sbjct: 108 DMKSSDPDTVPADDNVPIIELKERQKVVLTAVARLGRGKEHSKFQPVCPPGYKYVPIIEI 167
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKK 145
+ + + ++ GV +++K
Sbjct: 168 SDKCDS--CKQCVEQCPRGVFAVDKN 191
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVA 107
D+++ KL G I +T A K IG++HAK++P
Sbjct: 137 DVVLVKLGAGQRIKLTAIAKKGIGKEHAKWNPTC 170
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,265,592,201
Number of Sequences: 23463169
Number of extensions: 82387548
Number of successful extensions: 161064
Number of sequences better than 100.0: 799
Number of HSP's better than 100.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 159963
Number of HSP's gapped (non-prelim): 823
length of query: 152
length of database: 8,064,228,071
effective HSP length: 115
effective length of query: 37
effective length of database: 9,660,930,932
effective search space: 357454444484
effective search space used: 357454444484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)