BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1865
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
           T-U Mismatch And A Frayed Rna 3'-Uridine
 pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
 pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
 pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
           T-U Mismatch And A Frayed Rna 3'-Guanine
          Length = 347

 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 75  ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
           +LI KLR G E+ +T  A K I ++HAK+ P A   +   P
Sbjct: 171 VLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 211


>pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
 pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
           With The Inhibitor Alpha Amanitin
 pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
 pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
 pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
 pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
 pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
 pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
           Matched Nucleotide
 pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
           Mismatched Nucleotide
 pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
 pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
 pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
 pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
 pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
 pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
           Substrate Analogue Gmpcpp
 pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
 pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
 pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
           Dgtp
 pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
           Gmpcpp
 pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
           2'dutp
 pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
           Gmpcpp
 pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
           Dutp
 pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
           112006
 pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
           A
 pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
           B
 pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
           C
 pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
           C
 pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
           D
 pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
           Utp
 pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
           Complex
 pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
           Rdrp Scaffold
 pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
           Delta Virus-Derived Rna Stem Loop
 pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
           Elongation Complex
 pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
           Complex With The Inhibitor Alpha-Amanitin
 pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
           Mismatch
 pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
 pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
           Active Site
 pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
           Mismatch
 pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
           Mismatch
 pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
 pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
           Tfiib
 pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
 pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
 pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
 pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
 pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
           Subunit
 pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
           (Variant 1)
 pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
           (Variant 2)
 pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
           Rna Soaked With Atp
 pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
           Rna Soaked With Gtp
 pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
           Containing A 5br- U
 pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
           Containing A 2[prime]-Iodo Atp
 pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
           Dna-Rna Hybrid
 pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
           Dna-Rna Hybrid
 pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
           Dna-Rna Hybrid
 pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
           Dna-Rna Hybrid And Soaked With Ampcpp
 pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
           Dna-Rna Hybrid And Soaked With Ampcpp
 pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
           Dna-Rna Hybrid And Soaked With Gmpcpp
 pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
           Dna-Rna Hybrid
 pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
           Dna-Rna Hybrid And Soaked With Ampcpp
 pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
           Dna-Rna Hybrid And Soaked With Ampcpp
 pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
           Dna-Rna Hybrid
 pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
 pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
           Lesion
 pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
 pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
           Tfiib Complex
          Length = 318

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 75  ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
           +LI KLR G E+ +T  A K I ++HAK+ P A   +   P
Sbjct: 142 VLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182


>pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
           Complex D
 pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
           Complex E
          Length = 324

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 75  ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
           +LI KLR G E+ +T  A K I ++HAK+ P A   +   P
Sbjct: 148 VLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 188


>pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
           Vp16-Mediator-Pol Ii-Tfiif Assembly
          Length = 268

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 75  ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
           +LI KLR G E+ +T  A K I ++HAK+ P A   +   P
Sbjct: 142 VLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182


>pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 pdb|4AYB|D Chain D, Rnap At 3.2ang
 pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
 pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
          Length = 265

 Score = 35.4 bits (80), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 64  KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
           KS D  + PI  DI I  L    +I +        G++HAKF PV+ A  R  PK+ +  
Sbjct: 115 KSEDPSIVPISGDIPIVLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILG 174

Query: 122 EIE 124
             E
Sbjct: 175 NCE 177


>pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
           SULFOLOBUS Solfataricus Rna Polymerase
 pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
          Length = 265

 Score = 35.0 bits (79), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 42  EKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRD 99
           E   +++KDI            KS D  V PI  DI I  L    +I +        G++
Sbjct: 105 EPRMIYSKDI------------KSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYGKE 152

Query: 100 HAKFSPVATAFYRLLPKITLTQEIE 124
           HAKF PV+ +  R  PK+ +    E
Sbjct: 153 HAKFIPVSLSVVRYYPKVEILANCE 177


>pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe
 pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe
          Length = 297

 Score = 35.0 bits (79), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 76  LIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
           LI KLR   EI +   A K I ++HAK+SP +   +   P
Sbjct: 144 LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDP 183


>pdb|3OCJ|A Chain A, The Crystal Structure Of A Possilbe Exported Protein From
           Bordetella Parapertussis
          Length = 305

 Score = 29.3 bits (64), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 103 FSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVI 140
            +P+   FY  LP +  T+E  G   + LQ    PG +
Sbjct: 84  LAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCV 121


>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
 pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
 pdb|3H54|A Chain A, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase,Complex With Galnac
 pdb|3H54|B Chain B, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase,Complex With Galnac
 pdb|3H55|A Chain A, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase, Complex With Galactose
 pdb|3H55|B Chain B, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase, Complex With Galactose
 pdb|3IGU|A Chain A, Crystal Structure Of Human
           Alpha-n-acetylgalactosaminidase, Covalent Intermediate
 pdb|3IGU|B Chain B, Crystal Structure Of Human
           Alpha-n-acetylgalactosaminidase, Covalent Intermediate
 pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
          Length = 400

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 31/75 (41%)

Query: 72  HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
           H DIL     PGH  D  M  + + G    +       +  L   + ++ ++    AQ +
Sbjct: 218 HQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNM 277

Query: 132 QTMFSPGVISIEKKP 146
             + +P +I I + P
Sbjct: 278 DILQNPLMIKINQDP 292


>pdb|3QWR|D Chain D, Crystal Structure Of Il-23 In Complex With An Adnectin
          Length = 109

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 73  DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAF 110
           D   I+ L+PG +  +T++AV S  +   ++SP++  +
Sbjct: 57  DTATISGLKPGVDYTITVYAVTSSYKYDMQYSPISINY 94


>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate.
 pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
           Glucose- 1-phosphate Uridylyltransferase In Complex With
           Glucose- 1-phosphate
          Length = 297

 Score = 26.6 bits (57), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 59  QGDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKSIG 97
           QG  Y   D  G I  ++ +A  RP  E  V  FAVK++G
Sbjct: 258 QGTRYDCGDKAGFIQANLAVALSRPDLEPAVRAFAVKALG 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,071
Number of Sequences: 62578
Number of extensions: 132848
Number of successful extensions: 232
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 14
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)