BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1865
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus
musculus GN=Polr1c PE=1 SV=3
Length = 346
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + + SS +++Y HKV+T+ + WVP+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +E+
Sbjct: 251 EELSQCFSPGVIEVEE 266
>sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo
sapiens GN=POLR1C PE=1 SV=1
Length = 346
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
Query: 10 EPCEQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
E E DTLQF+L+++CT++ + SS +++Y HKV+T+ + W+P+G+Q D++ +
Sbjct: 131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190
Query: 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
P+HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct: 191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250
Query: 129 QRLQTMFSPGVISIEK 144
+ L FSPGVI +++
Sbjct: 251 EELSRCFSPGVIEVQE 266
>sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus
GN=POLR1C PE=2 SV=1
Length = 346
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 13 EQDTLQFQLKIKCTKSA-SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
E DTLQF+L+++CT++ + SS +++Y H+V+T+ + WVP+G+Q D++ + P+
Sbjct: 134 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPV 193
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
HDDILIA+LRPG EID+ M VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct: 194 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 253
Query: 132 QTMFSPGVISIEK 144
FSPGVI +++
Sbjct: 254 SRCFSPGVIEVQE 266
>sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III subunit RPAC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPC40 PE=1 SV=1
Length = 335
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 1 MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFSH-SSHADDMYEKHKVFTKDIQWVPIGSQ 59
+D NL + +++T+ L +KCT++ S+ ++Y V+ +D+++ P G Q
Sbjct: 116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175
Query: 60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
+ V P DIL+AKLRPG EI + + IG DHAKFSPV+TA YRLLP+I +
Sbjct: 176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235
Query: 120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGVV 151
Q I+GE A+R Q F PGVI I++ + V
Sbjct: 236 LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267
>sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III subunit RPAC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc40 PE=3 SV=1
Length = 348
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 9/139 (6%)
Query: 15 DTLQFQLKIKCTKSASFSHSSHADD-----MYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
DT+ F L KC F+ ++ D+ +Y +V++ D+ W P G Q + + + +
Sbjct: 137 DTVVFSLNKKC----EFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIR 192
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
++ DI++AKLRPG EID+ A+ IG+DHAKFSPVATA YRLLP I + IEGE A
Sbjct: 193 VVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAV 252
Query: 130 RLQTMFSPGVISIEKKPNA 148
+ Q F GVI +E+ P+
Sbjct: 253 KFQKCFPKGVIELEEGPDG 271
>sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1
OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1
Length = 345
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPI 71
+DTL FQLK+KC K S + + KH + WVP Q +M+ + + P+
Sbjct: 144 EDTLIFQLKVKCEKD-SVTGKIINETALSKHLI------WVPTQDQEEMFPNEEDRPRPM 196
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
DDI I KLRPG ID+ + K+IGR+H K+SPV TA YRL P I++ + I+G+ A +L
Sbjct: 197 EDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQPVISVDKSIKGDKANQL 256
Query: 132 QTMFSPGVISIE 143
V IE
Sbjct: 257 LEKCPKKVFDIE 268
>sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium
discoideum GN=polr2c PE=3 SV=1
Length = 302
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C+Q +++ +L +KCT++ +S + +++ +P+ SQ S
Sbjct: 98 CDQCSVELRLNVKCTENRPRDVTSS--------DLLSQNSAVIPVSSQVTSSNS------ 143
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
+I I KLR G EI + A K +G++HAK+SP A Y+ P I L Q
Sbjct: 144 EQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQ 193
>sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB3-B OS=Arabidopsis
thaliana GN=RPB36B PE=1 SV=2
Length = 319
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E CE +++F L KC + +S D+Y + D P+ + S
Sbjct: 97 EHCEFCSVEFPLSAKCVTDQTLDVTSR--DLY------SADPTVTPVDFTSNSSTSDSSE 148
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+IAKLR G E+ + A K IG+DHAK+SP AT Y P I + +E+
Sbjct: 149 --HKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEM 200
>sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis
thaliana GN=RPB36A PE=2 SV=1
Length = 319
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
CE +++F+L KC + +S D+Y T V + SS+
Sbjct: 99 CEFCSVEFRLSSKCVTDQTLDVTSR--DLYSADPTVTP----VDFTIDSSVSDSSE---- 148
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
H I+I KLR G E+ + A K IG+DHAK+SP AT + P I + +++
Sbjct: 149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDM 200
>sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens
GN=POLR2C PE=1 SV=2
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C
PE=2 SV=1
Length = 275
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 10 EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
E C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 92 EFCPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYV 143
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DDILI KLR G E+ + +A K G++HAK++P A + P L +
Sbjct: 144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196
>sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus
GN=Polr2c PE=2 SV=1
Length = 275
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++F L ++C + + H + D + +V +P+ S+ +D
Sbjct: 94 CPECSVEFTLDVRCNEDQT-RHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYVE- 144
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
DDILI KLR G E+ + + K G++HAK++P A + P
Sbjct: 145 QDDILIVKLRKGQELRLRAYVKKRSGKEHAKWNPTAGVAFEYDP 188
>sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rpoD PE=3 SV=1
Length = 270
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 64 KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
KS D V P++D I I +LR G E+++ A +G +HAK+ T Y+ PKI +
Sbjct: 114 KSDDPAVKPVYDTIPIVRLREGEEVELEAIAELGLGSEHAKWQATTTCGYKYYPKIEIDT 173
Query: 122 EIEGEMAQRLQ 132
E ++ + ++
Sbjct: 174 EKVNDLEEYVE 184
>sp|A5UN55|RPOD_METS3 DNA-directed RNA polymerase subunit D OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rpoD PE=3 SV=1
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 37 ADDMYEKHK--VFTKDIQWVPIGSQGDMYKS-SDVGPIHDDILIAKLRPGHEIDVTMFAV 93
DD YE++ +F+ + + D+ S S + P++D I + KL+ G ++++ A
Sbjct: 81 GDDDYEENNSVMFSLKEEGPKVVYSKDLISSDSKIKPVYDTIPLVKLKEGEKLNIEAVAK 140
Query: 94 KSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
G++HAK+ P Y+ P+IT +++
Sbjct: 141 VGYGKEHAKWMPTTVCVYKQYPEITFNEDV 170
>sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoD PE=3 SV=1
Length = 259
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P + DI I KL G + FA G+DHAK+ P T +Y+ +I +++EIEG
Sbjct: 110 DVKPANPDIPIVKLAKGQRLVFNAFAKLGRGKDHAKWQPGFT-YYKYFTRIHISKEIEG 167
>sp|Q8ZYQ3|RPOD_PYRAE DNA-directed RNA polymerase subunit D OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rpoD PE=3 SV=1
Length = 260
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P++ DI I KL G I + +A + +DHAK+ ATA Y PK+ + E E
Sbjct: 118 DVVPVYKDIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASYYYYPKVVVKSENCRE 176
Query: 127 MAQRL 131
M + +
Sbjct: 177 MCKEI 181
>sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoD PE=3 SV=1
Length = 264
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
D+I + +L G ++ + A GR+HAKF PV+ Y+++P+I + + G
Sbjct: 123 DNIPVLELFEGQQLMLEAVARLGTGREHAKFQPVSVCVYKIIPEIVVNENCNG 175
>sp|A4WNA4|RPOD_PYRAR DNA-directed RNA polymerase subunit D OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rpoD PE=3 SV=1
Length = 259
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGE 126
DV P++ DI I KL G I + +A I +DHAK+ ATA Y PK+ + E E
Sbjct: 118 DVVPVYKDIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ-AATASYYYYPKVIIKDEKCRE 176
Query: 127 MAQRL 131
+ + +
Sbjct: 177 ICKEI 181
>sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoD PE=3 SV=1
Length = 264
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 60 GDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ ++ V P++ DI + KL E+++ A +GR+HAK+ P Y+ P+I
Sbjct: 109 GDLVSETPAVKPVYPDIPLVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYKYYPRIE 168
Query: 119 LTQEIE 124
+++ +
Sbjct: 169 FSEDCD 174
>sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rpoD PE=3 SV=1
Length = 258
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 60 GDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ DV P++ DI I KL G + V +A RDHAK+ A A Y PK+
Sbjct: 110 GDLVADRPDVAPVYKDIPIVKLVEGQSVVVEAYAKLGRARDHAKWQ-AALASYYYYPKVV 168
Query: 119 LTQEIEGEMAQRL 131
+ +E EM + +
Sbjct: 169 VKREECREMCKEV 181
>sp|Q8TVB8|RPOD_METKA DNA-directed RNA polymerase subunit D OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rpoD PE=3 SV=1
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 45 KVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFS 104
KV+ +D++ + DV P D LI ++ I + + AV +G +HAK+
Sbjct: 110 KVYARDLK----------FDHPDVEPAFPDTLITEVGEDQRIRLEVIAVPGLGLEHAKWK 159
Query: 105 PVATAFYRLLPKITLTQEIEGEMAQRLQTMFSP-GVISIEK 144
PV+ Y+ LP++ + E ++ ++ T P G+I IE
Sbjct: 160 PVSAVGYKGLPELEID---EDKLKEKKITYECPQGIIRIEN 197
>sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB3 PE=1
SV=2
Length = 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 30 SFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDD-----ILIAKLRPGH 84
+F S ++Y K V ++ IG PI D +LI KLR G
Sbjct: 103 AFGESESTTNVYSKDLVIVSNLMGRNIGH-----------PIIQDKEGNGVLICKLRKGQ 151
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
E+ +T A K I ++HAK+ P A + P
Sbjct: 152 ELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182
>sp|C3MZ05|RPOD_SULIM DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoD PE=3 SV=1
Length = 265
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>sp|C4KJ93|RPOD_SULIK DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoD PE=3 SV=1
Length = 265
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>sp|C3N054|RPOD_SULIA DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoD PE=3 SV=1
Length = 265
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>sp|C3N8R8|RPOD_SULIY DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoD PE=3 SV=1
Length = 265
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>sp|C3NMQ0|RPOD_SULIN DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoD PE=3 SV=1
Length = 265
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>sp|C3MJP7|RPOD_SULIL DNA-directed RNA polymerase subunit D OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoD PE=3 SV=1
Length = 265
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ + E +++KDI KS D + PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEALNEPKMLYSKDI------------KSEDPSIVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ A R PK+ + E
Sbjct: 131 VLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCE 177
>sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoD PE=3 SV=2
Length = 259
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
DV P+ DI I KL G + +A G+DHAK+ P T +Y+ ++ ++++I G
Sbjct: 110 DVKPVTPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQPGFT-YYKYFTRVHISKKING 167
>sp|Q5JJF4|RPOD_PYRKO DNA-directed RNA polymerase subunit D OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoD PE=3
SV=1
Length = 259
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 60 GDMYKS-SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ S DV P + +I I KL G + +A G+DHAK+ P +Y+ L KI
Sbjct: 102 GDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP-GFVYYKYLTKIH 160
Query: 119 LTQEIEG-----EMAQR 130
+++++ E+A+R
Sbjct: 161 VSKDVPDWEELKELAER 177
>sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetrahymena thermophila
GN=CNJC PE=2 SV=1
Length = 310
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 75 ILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEG 125
I I KL G +I A K IG+ H+K++PV + + + P+I QEI+
Sbjct: 149 IPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQN 199
>sp|P95989|RPOD_SULSO DNA-directed RNA polymerase subunit D OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoD
PE=1 SV=1
Length = 265
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 23 IKCTKSASFSHSS---HADDMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPIHDDILI 77
I+CT++ ++ A+ E +++KDI KS D V PI DI I
Sbjct: 83 IECTENCEKCYTKIYIEAEAPNEPRMIYSKDI------------KSEDPSVVPISGDIPI 130
Query: 78 AKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
L +I + G++HAKF PV+ + R PK+ + E
Sbjct: 131 VLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCE 177
>sp|B1YC30|RPOD_PYRNV DNA-directed RNA polymerase subunit D OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoD PE=3 SV=1
Length = 262
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 60 GDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
GD+ + DV P+H DI I KL G I + +A R HAK+ A A Y P++
Sbjct: 110 GDLVSERPDVVPVHKDIPIVKLVKGQSIVLEAYAKLGRARGHAKWQ-AALASYYYYPRVE 168
Query: 119 LTQE 122
+ E
Sbjct: 169 VRDE 172
>sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb3 PE=1 SV=2
Length = 297
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
C + +++ L KCT + +++ +D+ + S + P
Sbjct: 96 CPKCSVELFLNAKCTGEGTM-------------EIYARDLV---VSSNSSLGHPILADPK 139
Query: 72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
LI KLR EI + A K I ++HAK+SP + + P
Sbjct: 140 SRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDP 183
>sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rpoD PE=3 SV=1
Length = 262
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 56 IGSQGDMY-KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
I GD+ + DV P++ DI I KL G I + +A ++HAK+ A A Y
Sbjct: 106 IVYSGDLVSERPDVVPVYKDIPIVKLVKGQSIILEAYAKLGRAKEHAKWQ-AALASYYYY 164
Query: 115 PKITLTQE 122
P+I + E
Sbjct: 165 PRIKVLDE 172
>sp|Q9YB53|RPOD_AERPE DNA-directed RNA polymerase subunit D OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoD PE=3 SV=2
Length = 286
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 58 SQGDMYKSS-DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
+ GD+ S V P++ + + + PG I V FA G++H K+SP + + R P
Sbjct: 119 TAGDLSISDPQVKPVYPETPLIYVAPGQRIHVQAFARLGRGKEHTKWSPASLSVLRYTP 177
>sp|Q96Q89|KI20B_HUMAN Kinesin-like protein KIF20B OS=Homo sapiens GN=KIF20B PE=1 SV=3
Length = 1820
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 47 FTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPV 106
F KD+QW+ + + Y+ +G H + KL ++F VK + + ++ S V
Sbjct: 311 FIKDLQWIQVSDSKEAYRLLKLGIKHQSVAFTKLNNASSRSHSIFTVKILQIEDSEMSRV 370
>sp|Q00813|RPOD_HALMA DNA-directed RNA polymerase subunit D OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rpoD PE=3 SV=1
Length = 259
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 5 LRLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYK 64
LRL P D F++ + T S S S A ++ D+ S M +
Sbjct: 64 LRLGLVPLTTDLDDFEIGDEVTLSLSVDGPSTA---------YSSDLV-----SSDPMVE 109
Query: 65 SSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
++D D+I I L+ G ++V AV GR+HAK YR L ++ E+
Sbjct: 110 AAD-----DNIPIIDLKEGQRLEVEADAVLDTGREHAKHQGGVAVGYRHLQQV----EVV 160
Query: 125 GEMAQ 129
G++ +
Sbjct: 161 GDLGE 165
>sp|Q96YW0|RPOD_SULTO DNA-directed RNA polymerase subunit D OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoD
PE=3 SV=1
Length = 264
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE 124
PI +I I L P ++ + G++H KFSPV+ A R P + + E
Sbjct: 124 PISGNIPIVLLGPKQKVTLEARLRLGYGKEHIKFSPVSIAVVRYYPHVEVKGNCE 178
>sp|Q6KZP5|RPOD_PICTO DNA-directed RNA polymerase subunit D OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=rpoD PE=3 SV=1
Length = 271
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 25 CTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGH 84
CT S + AD VF+ D+ +PI + D+ P+ I I KL+ G
Sbjct: 100 CTVKYSINKLGPAD-------VFSSDL--IPINN-------PDLKPVDPMIPIVKLKKGQ 143
Query: 85 EIDVTMFAVKSIGRDHAKFSPVATAFYR 112
+ VT A+ G+DHAK+ + Y+
Sbjct: 144 AMLVTCEAIMGRGKDHAKWQVTSGVSYK 171
>sp|Q3IQT6|RPOD_NATPD DNA-directed RNA polymerase subunit D OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rpoD PE=3 SV=1
Length = 247
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 39 DMYEKHKVFTK--DIQWVPIGSQGDMYKSSD-VGPIHDDILIAKLRPGHEIDVTMFAVKS 95
D YE + T D++ GD+ S D V P ++I I +L+ ++++ A
Sbjct: 75 DDYEPGETVTLAIDVEGPATAYSGDLVSSDDKVQPADENIPIIELKDDQQLELEADATLG 134
Query: 96 IGRDHAKFSPVATAFYRLLPKITLTQE 122
G+DHAK YR L ++ + E
Sbjct: 135 RGKDHAKHQGGVAVGYRHLQRVEVVGE 161
>sp|Q9CQ35|GRPL2_MOUSE GLIPR1-like protein 2 OS=Mus musculus GN=Glipr1l2 PE=2 SV=1
Length = 332
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 27 KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHE 85
K +S ++H D ++E H VFT+ IG +M+ VGP+ D + +R HE
Sbjct: 90 KKCMYSRNTHLDKLHESHPVFTE------IGE--NMW----VGPVEDFTVTTAIRSWHE 136
>sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoD
PE=3 SV=1
Length = 261
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
DV P++ +I I KL G + +A G+DHAK+ P +Y+ + +++ I
Sbjct: 112 DVKPVNPNIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP-GFVYYKYYTIVHISKSI 167
>sp|B1Y945|Y1348_PYRNV UPF0173 metal-dependent hydrolase Tneu_1348 OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=Tneu_1348 PE=3 SV=1
Length = 225
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 59 QGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYR 112
QG +Y + D G D LIA+L ++IDV M + S+ + + +AT F R
Sbjct: 130 QGTVYHAGDTGLFRDMELIAEL---YDIDVAMLPIGSVFTMGPREAAIATQFLR 180
>sp|Q9FXF2|RKF1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1
OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1
Length = 1021
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 29 ASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGH 84
A++ SS D M + + T+ +VP +Q D+YKS+ + P+ A L G+
Sbjct: 457 ANWGFSSTGDFMDDNNFQNTRFTMFVPASNQSDLYKSARIAPVSLTYFHACLENGN 512
>sp|P39471|RPOD_SULAC DNA-directed RNA polymerase subunit D OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoD PE=3 SV=2
Length = 264
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 64 KSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
KS D + P+ I I L +I + G++H K+SPV+ + R PK+T+
Sbjct: 115 KSEDQMITPVSGAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTVLG 174
Query: 122 EIE 124
E
Sbjct: 175 NCE 177
>sp|Q8DUL8|CCA_STRMU CCA-adding enzyme OS=Streptococcus mutans serotype c (strain ATCC
700610 / UA159) GN=cca PE=3 SV=1
Length = 401
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 5 LRLKYEPCE-QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDI--QWVPIGSQGD 61
+RLK+ P E Q+ L KIK ++ D+ H + DI P ++
Sbjct: 1 MRLKHLPSEFQEALPVLEKIKAAGFEAYFVGGSVRDVLLGHPIHDVDIASSSYPEETKKI 60
Query: 62 MYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121
++ D+G H +L+ L GH+ +VT F + + D YR +++ +
Sbjct: 61 FPRTVDIGIEHGTVLV--LENGHDYEVTTFRTEDLYVD-----------YRRPSQVSFVR 107
Query: 122 EIEGEMAQRLQTMFSPGVISIEKKPN 147
+E ++ +R F+ ++++K N
Sbjct: 108 SLEEDLKRR---DFTINAFALDEKAN 130
>sp|P04937|FINC_RAT Fibronectin OS=Rattus norvegicus GN=Fn1 PE=1 SV=2
Length = 2477
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 58 SQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
++G K +VGP+ + L+PG E VT+ AVK + SP AT + L
Sbjct: 1033 TRGGQPKQYNVGPMASKYPLRNLQPGSEYTVTLMAVKG-----NQQSPKATGVFTTL 1084
>sp|Q60700|M3K12_MOUSE Mitogen-activated protein kinase kinase kinase 12 OS=Mus musculus
GN=Map3k12 PE=1 SV=1
Length = 888
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 27 KSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIH-DDILIAKLRPGHE 85
K+ S H +D++E D+QWV G+QG ++ +G H +++ + K+R E
Sbjct: 137 KAYSTEHKQQQEDLWEVPFEEILDLQWVGSGAQGAVF----LGRFHGEEVAVKKVRDLKE 192
Query: 86 IDV 88
D+
Sbjct: 193 TDI 195
>sp|Q91740|FINC_XENLA Fibronectin OS=Xenopus laevis GN=fn1 PE=2 SV=1
Length = 2481
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 67 DVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKIT 118
+VGP + L PG E +V+++AVK + + +P++ F + +P++T
Sbjct: 1224 EVGPSQTYCVFENLSPGVEYNVSVYAVK----EEEESAPLSQMFLQEIPQLT 1271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,570,298
Number of Sequences: 539616
Number of extensions: 1996640
Number of successful extensions: 3898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3827
Number of HSP's gapped (non-prelim): 80
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)