Query psy1865
Match_columns 152
No_of_seqs 115 out of 524
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:18:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pa8_D DNA-directed RNA polyme 100.0 7.7E-30 2.6E-34 210.1 12.0 110 7-145 84-193 (265)
2 3h0g_C DNA-directed RNA polyme 100.0 1.3E-30 4.4E-35 219.2 4.0 116 8-142 92-209 (297)
3 1twf_C B44.5, DNA-directed RNA 99.9 2.8E-28 9.6E-33 206.6 9.3 101 7-121 87-188 (318)
4 2a6h_A DNA-directed RNA polyme 99.6 3.3E-16 1.1E-20 132.5 5.2 66 12-105 92-157 (315)
5 1bdf_A RNA polymerase alpha su 99.5 2.4E-14 8.1E-19 116.6 8.5 63 14-104 95-158 (235)
6 3lu0_A DNA-directed RNA polyme 98.9 1.2E-09 4E-14 92.9 5.0 76 12-115 93-189 (329)
7 2wnv_B C1Q chain B, complement 57.2 20 0.0007 25.5 5.3 42 74-117 93-134 (136)
8 2wnv_C C1Q chain C, complement 55.7 22 0.00075 25.1 5.2 40 74-115 91-130 (131)
9 2wnv_A C1Q chain A, complement 41.6 50 0.0017 23.2 5.2 40 74-116 92-133 (134)
10 3dlm_A Histone-lysine N-methyl 40.2 9.6 0.00033 30.3 1.2 18 72-89 151-168 (213)
11 2vb2_X Copper protein, cation 39.0 24 0.00083 23.7 3.0 24 70-93 52-75 (88)
12 2qcp_X Cation efflux system pr 37.9 26 0.00091 23.0 3.0 24 70-93 44-67 (80)
13 2p9r_A Alpha-2-M, alpha-2-macr 36.2 24 0.00082 23.4 2.6 16 80-95 13-28 (102)
14 3by7_A Uncharacterized protein 31.0 76 0.0026 22.1 4.5 25 92-121 42-66 (100)
15 2lbo_A Microneme protein 3; ap 26.0 30 0.001 25.2 1.7 16 89-104 31-49 (123)
16 2l55_A SILB,silver efflux prot 24.9 33 0.0011 22.7 1.7 26 70-95 38-63 (82)
17 4f3j_A Complement C1Q tumor ne 23.8 41 0.0014 24.0 2.2 44 74-119 92-137 (148)
18 1x5x_A Fibronectin type-III do 22.4 1.5E+02 0.0051 18.6 4.7 34 73-108 64-97 (109)
19 1gl4_B Basement membrane-speci 22.2 1.1E+02 0.0039 18.6 4.0 20 78-97 20-39 (98)
20 2cwj_A Putative endonuclease; 20.6 17 0.00058 25.3 -0.5 29 69-97 94-122 (123)
21 1qd9_A Purine regulatory prote 20.5 24 0.00083 24.6 0.3 27 69-95 98-124 (124)
No 1
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=99.96 E-value=7.7e-30 Score=210.12 Aligned_cols=110 Identities=24% Similarity=0.402 Sum_probs=98.6
Q ss_pred cCCCCCCCCeEEEEEEEEecCCCCCccCCCcccccccceeeecCeEEeecCCCCCCCCCCCCcccCCCceEEEcCCCCEE
Q psy1865 7 LKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEI 86 (152)
Q Consensus 7 ~~~~~c~~csV~f~L~V~c~~~~~~~~~~~~~~~~~~~~V~S~dL~~~p~~~q~~~~~~~~~~p~~~~I~I~KL~~GQ~I 86 (152)
+|+++|+.|+++|+|+|+|++++ ..|||+||++ .++.++|++++|+|+||++||+|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~g~--------------~~V~a~Di~~----------~~~~v~~~~~~i~I~~L~~g~~l 139 (265)
T 2pa8_D 84 ECTENCEKCYTKIYIEAEAPNEP--------------RMIYSKDIKS----------EDPSVVPISGDIPIVLLGTNQKI 139 (265)
T ss_dssp TCCSSCTTTEEEEEEEEECCSSC--------------EEEEGGGCEE----------SSTTCCBSCSCCEEEEECTTCEE
T ss_pred ccccCCCCcEEEEEEEEEecCCC--------------cEEEhhhccc----------CCCCceecCCCcEEEEeCCCCEE
Confidence 46789999999999999996542 6899999986 46778999999999999999999
Q ss_pred EEEEEEeecCCcceeeeccceeEEeEeeeeeEEccccChHHHHHHHhhCCCccEEeccC
Q psy1865 87 DVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKK 145 (152)
Q Consensus 87 ~l~~~A~kGiGk~HAKwsPv~~~~yr~~P~i~i~~~~~~~~~~~~~~~cp~~Vf~i~~~ 145 (152)
+|+|+|+||+|++||||+|+++++||++|.|.++ ..+.++++.||.|+|.++++
T Consensus 140 ~~e~~~~~G~G~~~ak~~pv~t~~yr~~p~I~i~-----~~C~~C~~~CP~g~I~id~~ 193 (265)
T 2pa8_D 140 SLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEIL-----ANCEKAVNVCPEGVFELKDG 193 (265)
T ss_dssp EEEEEEEEECTTTCGGGCCEEEEEEEEEEEEEEC-----SCCTTHHHHCTTCCEEEETT
T ss_pred EEEEEEecCccccccCcccceeeeeccccchhhh-----hhHHHHHHhCcccCeEecCC
Confidence 9999999999999999999999999999999998 22556888999999998763
No 2
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.3e-30 Score=219.20 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=90.9
Q ss_pred CCCCCCCCeEEEEEEEEecCCCCCccCCCcccccccceeeecCeEEeecCCCCCCCCCCCC-cccCCCceEEEcCCCCEE
Q psy1865 8 KYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GPIHDDILIAKLRPGHEI 86 (152)
Q Consensus 8 ~~~~c~~csV~f~L~V~c~~~~~~~~~~~~~~~~~~~~V~S~dL~~~p~~~q~~~~~~~~~-~p~~~~I~I~KL~~GQ~I 86 (152)
|+++|+.|+++|+|+|+|+++. +..|||+||+|.|. + .|..+.. .|++++|+|+||++||+|
T Consensus 92 ~~~~~~~~~v~l~L~v~g~~~~-------------~~~Vta~Dl~~~~~--~--~~~~pv~~~~~n~di~IakL~~gq~l 154 (297)
T 3h0g_C 92 CDQYCPKCSVELFLNAKCTGEG-------------TMEIYARDLVVSSN--S--SLGHPILADPKSRGPLICKLRKEQEI 154 (297)
T ss_dssp SSSSCGGGSCEEEEEECCCCSS-------------CEEEEGGGCBCCSC--C--SSCCBCCCSTTSCCSEEEEECSSCCE
T ss_pred cccCCCCceEEEEEEEEeccCC-------------CceEEcccccccCc--c--cccccccccCCCCCeEEEEECCCCEE
Confidence 5678999999999999998652 36899999998541 1 1111111 256899999999999999
Q ss_pred EEEEEEeecCCcceeeeccceeEEeEeeeeeEEccccC-hHHHHHHHhhCCCccEEe
Q psy1865 87 DVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIE-GEMAQRLQTMFSPGVISI 142 (152)
Q Consensus 87 ~l~~~A~kGiGk~HAKwsPv~~~~yr~~P~i~i~~~~~-~~~~~~~~~~cp~~Vf~i 142 (152)
+|+|+|+||+|++||||||||+|+|||+|+|+|++... .+ +..++.||.++|..
T Consensus 155 ~le~~a~kG~G~~HAKwsPv~~~~y~~~P~i~l~~~~~~~e--~~~~~~~P~~~~~~ 209 (297)
T 3h0g_C 155 SLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFE--NDADAEWPKSKNAD 209 (297)
T ss_dssp EEEEEEEEECGGGCTTSCCBCCCCCCSSSSCSSCCSCCCCS--SCSTTTSCCCGGGT
T ss_pred EEEEEEECCEeccccccCcceEEEEEeccceEEcccccccc--chhHhhCCccccce
Confidence 99999999999999999999999999999999997421 10 13556788887643
No 3
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=99.95 E-value=2.8e-28 Score=206.56 Aligned_cols=101 Identities=25% Similarity=0.393 Sum_probs=87.5
Q ss_pred cCCCCCCCCeEEEEEEEEecCCCCCccCCCcccccccceeeecCeEEeecCCCCCCCCCCCC-cccCCCceEEEcCCCCE
Q psy1865 7 LKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV-GPIHDDILIAKLRPGHE 85 (152)
Q Consensus 7 ~~~~~c~~csV~f~L~V~c~~~~~~~~~~~~~~~~~~~~V~S~dL~~~p~~~q~~~~~~~~~-~p~~~~I~I~KL~~GQ~ 85 (152)
+|+++|+.|+++|+|+|+|+++. ...|||+||+|.| +.+...+.++.+ .+++++|+|+||++||+
T Consensus 87 ~~~~~c~~~~v~l~L~v~c~~~g-------------~~~Vta~Di~~~~-~~~~~~~~~p~v~ei~npdi~IakL~~gq~ 152 (318)
T 1twf_C 87 FCEDHCDKCSVVLTLQAFGESES-------------TTNVYSKDLVIVS-NLMGRNIGHPIIQDKEGNGVLICKLRKGQE 152 (318)
T ss_dssp SSSSCCTTTEEEEEEEEECCSSS-------------CEEEEGGGEEECS-CCTTCSEEEECCCSTTSCCSEEEEECTTCE
T ss_pred ccccCCCCceEEEEEEEEecCCC-------------CeeEEhHhccccC-ccccccccCCCccccCCCCeEEEEECCCCE
Confidence 46789999999999999998763 2689999999965 223334556666 47899999999999999
Q ss_pred EEEEEEEeecCCcceeeeccceeEEeEeeeeeEEcc
Q psy1865 86 IDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121 (152)
Q Consensus 86 I~l~~~A~kGiGk~HAKwsPv~~~~yr~~P~i~i~~ 121 (152)
|+|+|+|+||+|++|||||||++++|||+|++++.+
T Consensus 153 L~me~~a~kG~G~~hAk~sPva~~~y~~~P~~~~~~ 188 (318)
T 1twf_C 153 LKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKH 188 (318)
T ss_dssp EEEEEEEEEECTTTCGGGCCEEEEEEEECSSTTSCC
T ss_pred EEEEEEEEcCcccccccccccccceecccccccccc
Confidence 999999999999999999999999999999998875
No 4
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=99.61 E-value=3.3e-16 Score=132.49 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=59.7
Q ss_pred CCCCeEEEEEEEEecCCCCCccCCCcccccccceeeecCeEEeecCCCCCCCCCCCCcccCCCceEEEcCCCCEEEEEEE
Q psy1865 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMF 91 (152)
Q Consensus 12 c~~csV~f~L~V~c~~~~~~~~~~~~~~~~~~~~V~S~dL~~~p~~~q~~~~~~~~~~p~~~~I~I~KL~~GQ~I~l~~~ 91 (152)
|+.|++.|+|+|+++ ..|||+||+| ++.+.|++++++|++|++||+|+|+|+
T Consensus 92 ~~~~~~~~~L~v~gp-----------------~~VtA~Di~~-----------~~~v~ivnpd~~IatL~~g~~l~me~~ 143 (315)
T 2a6h_A 92 PSLQTVTLLLKAEGP-----------------KEVKARDFLP-----------VADVEIMNPDLHIATLEEGGRLNMEVR 143 (315)
T ss_dssp TTCSBCCEEEEEESS-----------------CEEEGGGSCC-----------CTTEEESCTTCEEEEBCSSCEEEEEEE
T ss_pred CCCCeEEEEEEEecC-----------------eeEEhhhCCc-----------CCCcEEcCCCeEEEEECCCCEEEEEEE
Confidence 578999999999943 5799999985 456789999999999999999999999
Q ss_pred EeecCCcceeeecc
Q psy1865 92 AVKSIGRDHAKFSP 105 (152)
Q Consensus 92 A~kGiGk~HAKwsP 105 (152)
|.||+|++||||++
T Consensus 144 ~~kG~Gy~~ak~~~ 157 (315)
T 2a6h_A 144 VDRGVGYVPAEKHG 157 (315)
T ss_dssp EEEEESEECHHHHC
T ss_pred EEecCCccccccCc
Confidence 99999999999985
No 5
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=99.52 E-value=2.4e-14 Score=116.58 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCeEEEEEEEEecCCCCCccCCCcccccccceeeecCeEEeecCCCCCCCCCCCCcccCCCceEEEcCC-CCEEEEEEEE
Q psy1865 14 QDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRP-GHEIDVTMFA 92 (152)
Q Consensus 14 ~csV~f~L~V~c~~~~~~~~~~~~~~~~~~~~V~S~dL~~~p~~~q~~~~~~~~~~p~~~~I~I~KL~~-GQ~I~l~~~A 92 (152)
.|++.|+|+++++ ..|||+||+. ++.+.|++++++|++|++ ||+|+|+|+|
T Consensus 95 ~~~~~~~L~v~gp-----------------~~VtA~Di~~-----------~~~v~ivnpd~~IatL~~~g~~l~~e~~~ 146 (235)
T 1bdf_A 95 KDEVILTLNKSGI-----------------GPVTAADITH-----------DGDVEIVKPQHVICHLTDENASISMRIKV 146 (235)
T ss_dssp CSEEEEEEEEESS-----------------EEEEGGGBCC-----------CSSCEESCTTCEEEEECSTTCEEEEEEEE
T ss_pred CceEEEEEEEecC-----------------eEEEhHhCCC-----------CCCCEEcCCCeEEEEECCCCCEEEEEEEE
Confidence 6999999999843 5799999973 456889999999999999 9999999999
Q ss_pred eecCCcceeeec
Q psy1865 93 VKSIGRDHAKFS 104 (152)
Q Consensus 93 ~kGiGk~HAKws 104 (152)
.||+|++|||||
T Consensus 147 ~kG~Gy~~ak~s 158 (235)
T 1bdf_A 147 QRGRGYVPASTR 158 (235)
T ss_dssp EECCSEECGGGT
T ss_pred Eecccceecccc
Confidence 999999999993
No 6
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=98.89 E-value=1.2e-09 Score=92.91 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=63.9
Q ss_pred CCCCeEEEEEEEEecCCCCCccCCCcccccccceeeecCeEEeecCCCCCCCCCCCCcccCCCceEEEcC-CCCEEEEEE
Q psy1865 12 CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLR-PGHEIDVTM 90 (152)
Q Consensus 12 c~~csV~f~L~V~c~~~~~~~~~~~~~~~~~~~~V~S~dL~~~p~~~q~~~~~~~~~~p~~~~I~I~KL~-~GQ~I~l~~ 90 (152)
|..|++.++|+++.+ ..|||+||++ ++.+.+++++++|++|+ +||+|+|++
T Consensus 93 ~~~~~~~~~L~~~Gp-----------------~~VtA~DI~~-----------~~~veivnpd~~IatL~~~~~~L~me~ 144 (329)
T 3lu0_A 93 QGKDEVILTLNKSGI-----------------GPVTAADITH-----------DGDVEIVKPQHVICHLTDENASISMRI 144 (329)
T ss_dssp SSCSCEEEEECCCSS-----------------SCEETTSSCC-----------CSSEECSCTTCEEECBCSSCCCCCEEE
T ss_pred CCCceEEEEEEEeCC-----------------eEEEeeeecc-----------CCCCEEeCCCcEEEEEccCCcEEEEEE
Confidence 467899999998632 5799999975 34578899999999999 999999999
Q ss_pred EEeecCCcceee--------------------eccceeEEeEeee
Q psy1865 91 FAVKSIGRDHAK--------------------FSPVATAFYRLLP 115 (152)
Q Consensus 91 ~A~kGiGk~HAK--------------------wsPv~~~~yr~~P 115 (152)
+|.+|+|..+|. |+||--+.|.-.+
T Consensus 145 ~i~~G~GY~~a~~~~~~~~~~~~ig~i~iDa~fsPV~~Vny~Ve~ 189 (329)
T 3lu0_A 145 KVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 (329)
T ss_dssp EEEEESSEECTTTSCCCSTTSSSCCCEECCEECCCEEEEEEEEEE
T ss_pred EEECcccceechhccccccccCcCceEeeCCCCCceeeEEEEEec
Confidence 999999987653 8999999996554
No 7
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=57.18 E-value=20 Score=25.51 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=28.5
Q ss_pred CceEEEcCCCCEEEEEEEEeecCCcceeeeccceeEEeEeeeee
Q psy1865 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117 (152)
Q Consensus 74 ~I~I~KL~~GQ~I~l~~~A~kGiGk~HAKwsPv~~~~yr~~P~i 117 (152)
.-.|.+|.+|+++-|++..-.|+--.+..|+=- .+|.+.|+.
T Consensus 93 ~~~~L~L~~GD~V~v~~~~~~~~~~~~~~~stF--sGfLl~~~~ 134 (136)
T 2wnv_B 93 GGMVLKLEQGENVFLQATDKNSLLGMEGANSIF--SGFLLFPDM 134 (136)
T ss_dssp EEEEEEECTTCEEEEEEEEEECCBCBTTBCCEE--EEEEEEEC-
T ss_pred eeEEEEECCCCEEEEEEeCCceEEcCCCCCEEE--EEEEecccc
Confidence 467899999999999998766554333344422 357777763
No 8
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=55.74 E-value=22 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=27.1
Q ss_pred CceEEEcCCCCEEEEEEEEeecCCcceeeeccceeEEeEeee
Q psy1865 74 DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115 (152)
Q Consensus 74 ~I~I~KL~~GQ~I~l~~~A~kGiGk~HAKwsPv~~~~yr~~P 115 (152)
.-.|.+|.+|+++-|++..-.|+--.+..|+=- .+|.+.|
T Consensus 91 ~~~~L~L~~GD~V~v~~~~~~~~~~~~~~~stF--sGfLl~~ 130 (131)
T 2wnv_C 91 GGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVF--SGFLLFP 130 (131)
T ss_dssp EEEEEEECTTCEEEEEEEEEECCCCCTTCCCEE--EEEEEEE
T ss_pred eeEEEEECCCCEEEEEEeCCceEecCCCCCEEE--EEEEEeC
Confidence 466899999999999998766654333344422 2566555
No 9
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=41.61 E-value=50 Score=23.20 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=26.1
Q ss_pred CceEEEcCCCCEEEEEEEEeecCC--cceeeeccceeEEeEeeee
Q psy1865 74 DILIAKLRPGHEIDVTMFAVKSIG--RDHAKFSPVATAFYRLLPK 116 (152)
Q Consensus 74 ~I~I~KL~~GQ~I~l~~~A~kGiG--k~HAKwsPv~~~~yr~~P~ 116 (152)
.-.|.+|.+|+++-|++....|.- -.+ .|+=- .+|.+.|+
T Consensus 92 ~~~~L~L~~GD~V~l~~~~~~~~~~~~~~-~~stF--sGfLl~~~ 133 (134)
T 2wnv_A 92 GGMVLQLQQGDQVWVEKDPKKGHIYQGSE-ADSVF--SGFLIFPS 133 (134)
T ss_dssp EEEEEEECTTCEEEEEEEEEEECCCCSSS-SCCEE--EEEEEEEC
T ss_pred eeEEEEECCCCEEEEEEeCCCceEEcCCC-CCEEE--EEEEeecc
Confidence 457899999999999997765432 111 44422 35666654
No 10
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=40.23 E-value=9.6 Score=30.28 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=16.5
Q ss_pred CCCceEEEcCCCCEEEEE
Q psy1865 72 HDDILIAKLRPGHEIDVT 89 (152)
Q Consensus 72 ~~~I~I~KL~~GQ~I~l~ 89 (152)
+++-|+++|++||+|.+|
T Consensus 151 yP~rpmv~~~~GQ~i~~E 168 (213)
T 3dlm_A 151 YPNRPMVLLKSGQLIKTE 168 (213)
T ss_dssp TTCCCCCCCCTTCEEEEE
T ss_pred CCCCceEEcCCCCEEEEE
Confidence 578999999999999995
No 11
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=39.00 E-value=24 Score=23.68 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=20.2
Q ss_pred ccCCCceEEEcCCCCEEEEEEEEe
Q psy1865 70 PIHDDILIAKLRPGHEIDVTMFAV 93 (152)
Q Consensus 70 p~~~~I~I~KL~~GQ~I~l~~~A~ 93 (152)
.+.++..+..|++||+|++++.-.
T Consensus 52 ~v~~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 52 TITPQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp ECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EcCChhhhhcCCCCCEEEEEEEEe
Confidence 356788999999999999998644
No 12
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=37.89 E-value=26 Score=23.03 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=20.1
Q ss_pred ccCCCceEEEcCCCCEEEEEEEEe
Q psy1865 70 PIHDDILIAKLRPGHEIDVTMFAV 93 (152)
Q Consensus 70 p~~~~I~I~KL~~GQ~I~l~~~A~ 93 (152)
.+.++..+..|++||+|++++.-.
T Consensus 44 ~v~~~~~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 44 TITPQTKMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp ECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EccChhhhhcCCCCCEEEEEEEEe
Confidence 356788999999999999998643
No 13
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=36.20 E-value=24 Score=23.38 Aligned_cols=16 Identities=13% Similarity=0.555 Sum_probs=13.9
Q ss_pred cCCCCEEEEEEEEeec
Q psy1865 80 LRPGHEIDVTMFAVKS 95 (152)
Q Consensus 80 L~~GQ~I~l~~~A~kG 95 (152)
-||||.|+++++++-.
T Consensus 13 YrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 13 YKPGQTVKFRVVSMDE 28 (102)
T ss_dssp ECTTCEEEEEEEEECG
T ss_pred cCCCCEEEEEEEEECC
Confidence 4899999999999843
No 14
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=30.97 E-value=76 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=15.9
Q ss_pred EeecCCcceeeeccceeEEeEeeeeeEEcc
Q psy1865 92 AVKSIGRDHAKFSPVATAFYRLLPKITLTQ 121 (152)
Q Consensus 92 A~kGiGk~HAKwsPv~~~~yr~~P~i~i~~ 121 (152)
.-||+|--=|+|.|.+. .+.+.|+.
T Consensus 42 ~gk~~gigF~pW~plsd-----e~~~ii~~ 66 (100)
T 3by7_A 42 PGKPVQLVLSPWQPYTD-----DKEIVIDD 66 (100)
T ss_dssp ---CCEEEEEESCTTBC-----CSEEEEEG
T ss_pred CCcceeEeeecccccCc-----CceEEEch
Confidence 34466666789999876 66666663
No 15
>2lbo_A Microneme protein 3; apicomplexan, protozoa, cell adhesion, MICR microneme adhesive repeat; NMR {Eimeria tenella}
Probab=25.98 E-value=30 Score=25.20 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.2
Q ss_pred EEEEeecCCcce---eeec
Q psy1865 89 TMFAVKSIGRDH---AKFS 104 (152)
Q Consensus 89 ~~~A~kGiGk~H---AKws 104 (152)
.++||+|+|+.| +.|.
T Consensus 31 ~~vAR~g~G~~~q~~~~WR 49 (123)
T 2lbo_A 31 AIYARYDKGNSSQQTKEWR 49 (123)
T ss_dssp CEEEEEECCSGGGCSCEEE
T ss_pred hheeeeccCCCCCCCccee
Confidence 589999999866 7776
No 16
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=24.87 E-value=33 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=20.7
Q ss_pred ccCCCceEEEcCCCCEEEEEEEEeec
Q psy1865 70 PIHDDILIAKLRPGHEIDVTMFAVKS 95 (152)
Q Consensus 70 p~~~~I~I~KL~~GQ~I~l~~~A~kG 95 (152)
++.++..+..|++||+|++++.-..|
T Consensus 38 ~v~~~~~l~~lk~Gd~V~F~~~~~~~ 63 (82)
T 2l55_A 38 AAPPAGLPQGLKAGDRVAFSFRLDPH 63 (82)
T ss_dssp ECCTTCCCSSCSTTCEEEEEEEEETT
T ss_pred EcCChhHhhcCCCCCEEEEEEEECCC
Confidence 34667789999999999999965543
No 17
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=23.78 E-value=41 Score=24.02 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=26.3
Q ss_pred CceEEEcCCCCEEEEEEEEeecCC--cceeeeccceeEEeEeeeeeEE
Q psy1865 74 DILIAKLRPGHEIDVTMFAVKSIG--RDHAKFSPVATAFYRLLPKITL 119 (152)
Q Consensus 74 ~I~I~KL~~GQ~I~l~~~A~kGiG--k~HAKwsPv~~~~yr~~P~i~i 119 (152)
.-.|..|.+|+++.|++..-.+.| -....|+ .=.+|-+.|+++-
T Consensus 92 ~s~il~L~~GD~V~v~~~~~~~~~~~~~~~~~s--~FsGfLl~~D~~~ 137 (148)
T 4f3j_A 92 GGAMVRLEPEDQVWVQVGVGDYIGIYASIKTDS--TFSGFLVYSDWHS 137 (148)
T ss_dssp EEEEEEECTTCEEEEECCSTTCEEEECBTTBCC--EEEEEEEEESCCS
T ss_pred eEEEEEcCCCCEEEEEEEcCCCceEEcCCCCCe--EEEEEEEeecCCC
Confidence 346889999999999865322211 1111222 1247888888864
No 18
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=22.44 E-value=1.5e+02 Score=18.64 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCceEEEcCCCCEEEEEEEEeecCCcceeeecccee
Q psy1865 73 DDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVAT 108 (152)
Q Consensus 73 ~~I~I~KL~~GQ~I~l~~~A~kGiGk~HAKwsPv~~ 108 (152)
....|..|.+|.+=.++..|+-..|. ..||....
T Consensus 64 ~~~~v~~L~p~t~Y~frV~A~n~~G~--s~~S~~~~ 97 (109)
T 1x5x_A 64 LAYTVKNLRRSTKYKFKVIAYNSEGK--SNPSEVVE 97 (109)
T ss_dssp SEEEEESCCSSCEEEEEEEEECSSCE--EEECCCEE
T ss_pred cEEEECCCCCCCEEEEEEEEEeCCCC--cCCccCEE
Confidence 45778899999999999999998886 66776643
No 19
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=22.24 E-value=1.1e+02 Score=18.63 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=15.8
Q ss_pred EEcCCCCEEEEEEEEeecCC
Q psy1865 78 AKLRPGHEIDVTMFAVKSIG 97 (152)
Q Consensus 78 ~KL~~GQ~I~l~~~A~kGiG 97 (152)
.....|+.+.|.|.+.-|.-
T Consensus 20 ~~v~~G~~v~l~C~~~~~~p 39 (98)
T 1gl4_B 20 QSVRPGADVTFICTAKSKSP 39 (98)
T ss_dssp EEECTTCCEEEEEEEEESSS
T ss_pred eEEecCCCEEEEEeCCCCCC
Confidence 35688999999999985543
No 20
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=20.56 E-value=17 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=20.9
Q ss_pred cccCCCceEEEcCCCCEEEEEEEEeecCC
Q psy1865 69 GPIHDDILIAKLRPGHEIDVTMFAVKSIG 97 (152)
Q Consensus 69 ~p~~~~I~I~KL~~GQ~I~l~~~A~kGiG 97 (152)
.|..--|-...|.+|..|+++++|.++-.
T Consensus 94 ~Part~v~V~~L~~~~~VEIe~iA~~~~~ 122 (123)
T 2cwj_A 94 YPARAVVGVAALPLGAPLEVEAVLYTCRR 122 (123)
T ss_dssp CCEEEEEECSCCGGGCSEEEEEECBC---
T ss_pred CCcEEEEEhhcCCCCCEEEEEEEEEeCCC
Confidence 45555555568999999999999998753
No 21
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=20.45 E-value=24 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=21.1
Q ss_pred cccCCCceEEEcCCCCEEEEEEEEeec
Q psy1865 69 GPIHDDILIAKLRPGHEIDVTMFAVKS 95 (152)
Q Consensus 69 ~p~~~~I~I~KL~~GQ~I~l~~~A~kG 95 (152)
+|..--+....|.+|..|+++++|.+|
T Consensus 98 ~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 1qd9_A 98 KPARSCVEVARLPKDALVEIEVIALVK 124 (124)
T ss_dssp CCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred CCCeEEEEcccCCCCCEEEEEEEEEeC
Confidence 455555556689999999999999875
Done!