AmiGO: BLAST Results


BLAST match view associations BLAST with polr1c polr1c polr1c polymerase (RNA) I polypeptide C	gene_product from Danio rerio	1.7e-38
BLAST match view associations BLAST with Polr1c Polr1c Polr1c polymerase (RNA) I polypeptide C	protein from Mus musculus	1.7e-38
BLAST match view associations BLAST with POLR1C POLR1C POLR1C Uncharacterized protein	protein from Gallus gallus	2.1e-36
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Homo sapiens	1.9e-35
BLAST match view associations BLAST with RPA39 RPA39 RPA39 Uncharacterized protein	protein from Sus scrofa	4.0e-35
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Bos taurus	6.5e-35
BLAST match view associations BLAST with POLR1C POLR1C POLR1C Uncharacterized protein	protein from Canis lupus familiaris	8.3e-35
BLAST match view associations BLAST with CG3756 CG3756 CG3756	protein from Drosophila melanogaster	1.3e-34
BLAST match view associations BLAST with rpac-40 rpac-40 rpac-40	gene from Caenorhabditis elegans	5.0e-28
BLAST match view associations BLAST with RPC40 RPC40 RPC40	gene_product from Candida albicans	4.2e-24
BLAST match view associations BLAST with RPC40 RPC40 RPC40 RNA polymerase subunit AC40	gene from Saccharomyces cerevisiae	5.3e-24
BLAST match view associations BLAST with MGG_09284 MGG_09284 MGG_09284 DNA-directed RNA polymerase I and III subunit RPAC1	protein from Magnaporthe oryzae 70-15	3.8e-20
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Homo sapiens	3.1e-19
BLAST match view associations BLAST with rpa5 rpa5 rpa5 RNA polymerase III subunit	gene from Dictyostelium discoideum	2.2e-18
BLAST match view associations BLAST with RPAC43 RPAC43 RPAC43 AT1G60620	protein from Arabidopsis thaliana	1.6e-14
BLAST match view associations BLAST with ATRPAC42 ATRPAC42 ATRPAC42 AT1G60850	protein from Arabidopsis thaliana	1.9e-14
BLAST match view associations BLAST with NRPE3B NRPE3B NRPE3B AT2G15400	protein from Arabidopsis thaliana	1.9e-08
BLAST match view associations BLAST with rpb3 rpb3 rpb3 RNA polymerase II core subunit	gene from Dictyostelium discoideum	9.8e-07
BLAST match view associations BLAST with NRPB3 NRPB3 NRPB3 AT2G15430	protein from Arabidopsis thaliana	1.1e-06
BLAST match view associations BLAST with RpII33 RpII33 RpII33 RNA polymerase II 33kD subunit	protein from Drosophila melanogaster	1.3e-06
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Homo sapiens	1.5e-05
BLAST match view associations BLAST with LOC100620737 LOC100620737 LOC100620737 Uncharacterized protein	protein from Sus scrofa	2.2e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C Uncharacterized protein	protein from Gallus gallus	2.8e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C DNA-directed RNA polymerase II subunit RPB3	protein from Bos taurus	4.7e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C Uncharacterized protein	protein from Canis lupus familiaris	4.7e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C DNA-directed RNA polymerase II subunit RPB3	protein from Homo sapiens	4.7e-05
BLAST match view associations BLAST with Polr2c Polr2c Polr2c polymerase (RNA) II (DNA directed) polypeptide C	gene from Rattus norvegicus	4.7e-05
BLAST match view associations BLAST with polr2c polr2c polr2c polymerase (RNA) II (DNA directed) polypeptide C	gene_product from Danio rerio	0.00050
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy1865
        (152 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

ZFIN|ZDB-GENE-040426-1495 - symbol:polr1c "polymerase (RN...   391  1.7e-38   2
MGI|MGI:103288 - symbol:Polr1c "polymerase (RNA) I polype...   386  1.7e-38   2
UNIPROTKB|Q5RJK9 - symbol:Polr1c "Protein Polr1c" species...   386  9.3e-38   2
UNIPROTKB|E1C548 - symbol:POLR1C "Uncharacterized protein...   392  2.1e-36   1
UNIPROTKB|F1LXY3 - symbol:Polr1c "Protein Polr1c" species...   386  9.2e-36   1
UNIPROTKB|O15160 - symbol:POLR1C "DNA-directed RNA polyme...   383  1.9e-35   1
UNIPROTKB|F1RRJ4 - symbol:POLR1C "Uncharacterized protein...   380  4.0e-35   1
UNIPROTKB|Q32L22 - symbol:POLR1C "DNA-directed RNA polyme...   378  6.5e-35   1
UNIPROTKB|E2RH57 - symbol:POLR1C "Uncharacterized protein...   377  8.3e-35   1
FB|FBgn0031657 - symbol:CG3756 species:7227 "Drosophila m...   375  1.3e-34   1
WB|WBGene00019275 - symbol:rpac-40 species:6239 "Caenorha...   313  5.0e-28   1
POMBASE|SPBC1289.07c - symbol:rpc40 "DNA-directed RNA pol...   269  8.2e-26   2
CGD|CAL0005950 - symbol:RPC40 species:5476 "Candida albic...   276  4.2e-24   1
SGD|S000006314 - symbol:RPC40 "RNA polymerase subunit AC4...   275  5.3e-24   1
ASPGD|ASPL0000043748 - symbol:AN2415 species:162425 "Emer...   250  2.4e-21   1
UNIPROTKB|G4MQN0 - symbol:MGG_09284 "DNA-directed RNA pol...   240  3.8e-20   1
UNIPROTKB|E7EQB9 - symbol:POLR1C "DNA-directed RNA polyme...   230  3.1e-19   1
DICTYBASE|DDB_G0282339 - symbol:rpa5 "RNA polymerase III ...   223  2.2e-18   1
TAIR|locus:2036494 - symbol:RPAC43 "RNA polymerase I subu...   191  1.6e-14   1
TAIR|locus:2025855 - symbol:ATRPAC42 species:3702 "Arabid...   190  1.9e-14   1
TAIR|locus:2047198 - symbol:NRPE3B species:3702 "Arabidop...   134  1.9e-08   1
DICTYBASE|DDB_G0292244 - symbol:rpb3 "RNA polymerase II c...   118  9.8e-07   1
TAIR|locus:2047168 - symbol:NRPB3 species:3702 "Arabidops...   118  1.1e-06   1
FB|FBgn0026373 - symbol:RpII33 "RNA polymerase II 33kD su...   116  1.3e-06   1
UNIPROTKB|D6RDJ3 - symbol:POLR1C "DNA-directed RNA polyme...   101  1.5e-05   1
UNIPROTKB|I3LCH3 - symbol:POLR2C "Uncharacterized protein...   105  2.2e-05   1
UNIPROTKB|E1BV97 - symbol:POLR2C "Uncharacterized protein...   104  2.8e-05   1
UNIPROTKB|Q3T0Q3 - symbol:POLR2C "DNA-directed RNA polyme...   102  4.7e-05   1
UNIPROTKB|E2RQ42 - symbol:POLR2C "Uncharacterized protein...   102  4.7e-05   1
UNIPROTKB|P19387 - symbol:POLR2C "DNA-directed RNA polyme...   102  4.7e-05   1
RGD|1306935 - symbol:Polr2c "polymerase (RNA) II (DNA dir...   102  4.7e-05   1
UNIPROTKB|D4A8A8 - symbol:Polr2c "Protein Polr2c" species...   102  6.6e-05   1
ZFIN|ZDB-GENE-030131-6609 - symbol:polr2c "polymerase (RN...    99  0.00050   1


>ZFIN|ZDB-GENE-040426-1495 [details] [associations]
            symbol:polr1c "polymerase (RNA) I polypeptide C"
            species:7955 "Danio rerio" [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 ZFIN:ZDB-GENE-040426-1495
            GO:GO:0003677 GO:GO:0006351 EMBL:AL928951 GO:GO:0003899
            eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
            HOVERGEN:HBG017743 OMA:GKCQRFL OrthoDB:EOG47SSF0
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 IPI:IPI00491988
            Ensembl:ENSDART00000128246 InParanoid:A2ATX1 Uniprot:A2ATX1
        Length = 362

 Score = 391 (142.7 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 72/135 (53%), Positives = 97/135 (71%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DT+Q QLK+KCT+             +Y  H +++ DI+W+PIG+Q D++  + +
Sbjct:   147 EGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKI 206

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
             GP+H DIL+A++RPG E+D+ M  VK IG+DHAKFSPVATA YRLLP+ITL Q IEGE A
Sbjct:   207 GPVHGDILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIEGEQA 266

Query:   129 QRLQTMFSPGVISIE 143
             +RL+  FSPGVI +E
Sbjct:   267 ERLKRCFSPGVIELE 281

 Score = 37 (18.1 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query:     3 KNLRLKYEPCEQDTLQFQL 21
             KN R++    +++TL+F +
Sbjct:    63 KNFRIEIISSDENTLEFDM 81


>MGI|MGI:103288 [details] [associations]
            symbol:Polr1c "polymerase (RNA) I polypeptide C"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] Reactome:REACT_78136
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 MGI:MGI:103288 GO:GO:0005654
            GO:GO:0003677 GO:GO:0006351 EMBL:CH466559 GO:GO:0003899
            Reactome:REACT_86751 CleanEx:MM_POLR1E CTD:9533 eggNOG:COG0202
            GeneTree:ENSGT00550000075060 HOVERGEN:HBG017743 KO:K03027
            OMA:GKCQRFL OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 EMBL:D31966 EMBL:AK132114 EMBL:AK146240
            IPI:IPI00816991 PIR:A55082 RefSeq:NP_033111.2 UniGene:Mm.3458
            ProteinModelPortal:P52432 SMR:P52432 STRING:P52432
            PhosphoSite:P52432 PaxDb:P52432 PRIDE:P52432
            Ensembl:ENSMUST00000087026 GeneID:20016 KEGG:mmu:20016
            InParanoid:Q3UJZ9 NextBio:297517 Bgee:P52432 Genevestigator:P52432
            GermOnline:ENSMUSG00000067148 Uniprot:P52432
        Length = 346

 Score = 386 (140.9 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 72/136 (52%), Positives = 95/136 (69%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + WVP+G+Q D++    +
Sbjct:   131 EGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTI 190

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct:   191 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAA 250

Query:   129 QRLQTMFSPGVISIEK 144
             + L   FSPGVI +E+
Sbjct:   251 EELSQCFSPGVIEVEE 266

 Score = 42 (19.8 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query:     2 DKNLRLKYEPCEQDTLQFQL 21
             +KN R+     ++DTL+F +
Sbjct:    46 EKNFRVDVVQMDEDTLEFDM 65


>UNIPROTKB|Q5RJK9 [details] [associations]
            symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
            EMBL:CH473987 CTD:9533 eggNOG:COG0202 GeneTree:ENSGT00550000075060
            HOGENOM:HOG000230845 HOVERGEN:HBG017743 KO:K03027 OrthoDB:EOG47SSF0
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
            RGD:1309689 EMBL:BC086597 IPI:IPI00373754 RefSeq:NP_001008331.1
            UniGene:Rn.107990 STRING:Q5RJK9 Ensembl:ENSRNOT00000025787
            GeneID:301246 KEGG:rno:301246 InParanoid:Q5RJK9 NextBio:648381
            Genevestigator:Q5RJK9 Uniprot:Q5RJK9
        Length = 346

 Score = 386 (140.9 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 72/136 (52%), Positives = 96/136 (70%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + WVP+G+Q D++    V
Sbjct:   131 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTV 190

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct:   191 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250

Query:   129 QRLQTMFSPGVISIEK 144
             + L   FSPGVI++++
Sbjct:   251 EELSQCFSPGVIAVQE 266

 Score = 35 (17.4 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query:     2 DKNLRLKYEPCEQDTLQFQL 21
             +KN R+     ++ TL+F +
Sbjct:    46 EKNFRVDVVHMDESTLEFDM 65


>UNIPROTKB|E1C548 [details] [associations]
            symbol:POLR1C "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:9533
            GeneTree:ENSGT00550000075060 KO:K03027 OMA:GKCQRFL
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            EMBL:AADN02011864 IPI:IPI00572554 RefSeq:XP_419502.1
            UniGene:Gga.1059 Ensembl:ENSGALT00000016848 GeneID:421452
            KEGG:gga:421452 NextBio:20824218 Uniprot:E1C548
        Length = 346

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 78/135 (57%), Positives = 94/135 (69%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQFQLKIKC++             +Y  HKV++K + WVP+G+Q D++  +D 
Sbjct:   131 EGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADF 190

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA LRPG EIDV M  VK IG+DHAKFSPVATA YRLLP ITL Q +E E A
Sbjct:   191 RPVHDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAA 250

Query:   129 QRLQTMFSPGVISIE 143
             + LQ  FSPGVI I+
Sbjct:   251 ETLQKCFSPGVIEIQ 265


>UNIPROTKB|F1LXY3 [details] [associations]
            symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
            GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            IPI:IPI00948748 Ensembl:ENSRNOT00000067036 RGD:1309689
            ArrayExpress:F1LXY3 Uniprot:F1LXY3
        Length = 260

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 72/136 (52%), Positives = 96/136 (70%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + WVP+G+Q D++    V
Sbjct:    45 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTV 104

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct:   105 RPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 164

Query:   129 QRLQTMFSPGVISIEK 144
             + L   FSPGVI++++
Sbjct:   165 EELSQCFSPGVIAVQE 180


>UNIPROTKB|O15160 [details] [associations]
            symbol:POLR1C "DNA-directed RNA polymerases I and III
            subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
            "transcription from RNA polymerase I promoter" evidence=TAS]
            [GO:0006361 "transcription initiation from RNA polymerase I
            promoter" evidence=TAS] [GO:0006362 "transcription elongation from
            RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
            of RNA polymerase I transcription" evidence=TAS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=TAS]
            [GO:0006385 "transcription elongation from RNA polymerase III
            promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
            III transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] Reactome:REACT_71 InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0005654 GO:GO:0003677 Reactome:REACT_1788
            GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0005736
            GO:GO:0003899 GO:GO:0006386 GO:GO:0006385 EMBL:AL355802
            CleanEx:HS_POLR1E CTD:9533 eggNOG:COG0202 HOGENOM:HOG000230845
            HOVERGEN:HBG017743 KO:K03027 OMA:GKCQRFL Gene3D:2.170.120.12
            SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AF008442 EMBL:AF047441
            EMBL:BC008863 IPI:IPI00005179 IPI:IPI00217386 RefSeq:NP_976035.1
            UniGene:Hs.584839 ProteinModelPortal:O15160 SMR:O15160
            DIP:DIP-27587N IntAct:O15160 MINT:MINT-1137932 STRING:O15160
            PhosphoSite:O15160 REPRODUCTION-2DPAGE:IPI00217386
            SWISS-2DPAGE:O15160 PaxDb:O15160 PRIDE:O15160 DNASU:9533
            Ensembl:ENST00000304004 Ensembl:ENST00000372389 GeneID:9533
            KEGG:hsa:9533 UCSC:uc003ovn.3 UCSC:uc003ovo.2 GeneCards:GC06P043484
            H-InvDB:HIX0005907 HGNC:HGNC:20194 HPA:HPA031010 MIM:248390
            MIM:610060 neXtProt:NX_O15160 Orphanet:861 PharmGKB:PA134882004
            InParanoid:O15160 PhylomeDB:O15160 GenomeRNAi:9533 NextBio:35740
            ArrayExpress:O15160 Bgee:O15160 CleanEx:HS_POLR1C
            Genevestigator:O15160 GermOnline:ENSG00000171453 Uniprot:O15160
        Length = 346

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 70/136 (51%), Positives = 95/136 (69%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + W+P+G+Q D++    +
Sbjct:   131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EGE A
Sbjct:   191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAA 250

Query:   129 QRLQTMFSPGVISIEK 144
             + L   FSPGVI +++
Sbjct:   251 EELSRCFSPGVIEVQE 266


>UNIPROTKB|F1RRJ4 [details] [associations]
            symbol:POLR1C "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
            EMBL:CU928765 GeneTree:ENSGT00550000075060 OMA:GKCQRFL
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            Ensembl:ENSSSCT00000028506 ArrayExpress:F1RRJ4 Uniprot:F1RRJ4
        Length = 351

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 70/136 (51%), Positives = 95/136 (69%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + WVP+G+Q D++    +
Sbjct:   136 EGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTI 195

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct:   196 RPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 255

Query:   129 QRLQTMFSPGVISIEK 144
             + L   FSPGVI +++
Sbjct:   256 EELSRCFSPGVIEVQE 271


>UNIPROTKB|Q32L22 [details] [associations]
            symbol:POLR1C "DNA-directed RNA polymerases I and III
            subunit RPAC1" species:9913 "Bos taurus" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006351 GO:GO:0003899 EMBL:BC109803 IPI:IPI00709012
            RefSeq:NP_001033213.1 UniGene:Bt.42189 ProteinModelPortal:Q32L22
            STRING:Q32L22 PRIDE:Q32L22 Ensembl:ENSBTAT00000025246 GeneID:516337
            KEGG:bta:516337 CTD:9533 eggNOG:COG0202
            GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
            HOVERGEN:HBG017743 InParanoid:Q32L22 KO:K03027 OMA:GKCQRFL
            OrthoDB:EOG47SSF0 NextBio:20872197 Gene3D:2.170.120.12
            SUPFAM:SSF56553 SUPFAM:SSF55257 Uniprot:Q32L22
        Length = 346

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 69/133 (51%), Positives = 94/133 (70%)

Query:    13 EQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             E DTLQF+L+++CT+             +Y  H+V+T+ + WVP+G+Q D++    + P+
Sbjct:   134 EIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPV 193

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
             HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EGE A+ L
Sbjct:   194 HDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEEL 253

Query:   132 QTMFSPGVISIEK 144
                FSPGVI +++
Sbjct:   254 SRCFSPGVIEVQE 266


>UNIPROTKB|E2RH57 [details] [associations]
            symbol:POLR1C "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
            GO:GO:0003899 CTD:9533 GeneTree:ENSGT00550000075060 KO:K03027
            OMA:GKCQRFL Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            EMBL:AAEX03008344 RefSeq:XP_532147.1 ProteinModelPortal:E2RH57
            Ensembl:ENSCAFT00000002964 GeneID:474912 KEGG:cfa:474912
            NextBio:20850849 Uniprot:E2RH57
        Length = 346

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 69/136 (50%), Positives = 95/136 (69%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+++ + WVP+G+Q D++    +
Sbjct:   131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTI 190

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
              P+HDDILIA+LRPG EID+ M  VK IG+DHAKFSPVATA YRLLP ITL + +EG+ A
Sbjct:   191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAA 250

Query:   129 QRLQTMFSPGVISIEK 144
             + L   FSPGVI +++
Sbjct:   251 EELSRCFSPGVIEVQE 266


>FB|FBgn0031657 [details] [associations]
            symbol:CG3756 species:7227 "Drosophila melanogaster"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;NAS] [GO:0005666 "DNA-directed RNA polymerase III
            complex" evidence=NAS] [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=NAS] [GO:0005736 "DNA-directed
            RNA polymerase I complex" evidence=NAS] [GO:0006360 "transcription
            from RNA polymerase I promoter" evidence=NAS] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            SMART:SM00662 GO:GO:0005875 EMBL:AE014134 GO:GO:0003677
            GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
            GeneTree:ENSGT00550000075060 KO:K03027 Gene3D:2.170.120.12
            SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL EMBL:AY119625
            RefSeq:NP_608885.1 UniGene:Dm.30765 SMR:Q9VMX3 IntAct:Q9VMX3
            MINT:MINT-1550361 STRING:Q9VMX3 EnsemblMetazoa:FBtr0078994
            GeneID:33712 KEGG:dme:Dmel_CG3756 UCSC:CG3756-RA
            FlyBase:FBgn0031657 InParanoid:Q9VMX3 OrthoDB:EOG4X95ZS
            GenomeRNAi:33712 NextBio:784915 Uniprot:Q9VMX3
        Length = 333

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 73/139 (52%), Positives = 96/139 (69%)

Query:    13 EQDTLQFQLKIKCTKXXXXXXXXXXXX-MYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             EQDTL+F+LK+KC++             +Y+ HKV++  ++W+P G Q  +Y  S V  I
Sbjct:   127 EQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCI 186

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
             HDDILIA+LRPGHE+D+ + AVK +GRDHAKFSPVATA YRLLP I L +E+ G+ A  L
Sbjct:   187 HDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLL 246

Query:   132 QTMFSPGVISIEKKPNAGV 150
             Q  FSPGVI I++   A V
Sbjct:   247 QNCFSPGVIGIDENETAYV 265


>WB|WBGene00019275 [details] [associations]
            symbol:rpac-40 species:6239 "Caenorhabditis elegans"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0009792 GO:GO:0006898
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
            GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
            GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845 KO:K03027
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
            EMBL:FO081035 RefSeq:NP_504166.2 ProteinModelPortal:Q9UAY9
            SMR:Q9UAY9 STRING:Q9UAY9 PaxDb:Q9UAY9 EnsemblMetazoa:H43I07.2
            GeneID:178823 KEGG:cel:CELE_H43I07.2 UCSC:H43I07.2 CTD:178823
            WormBase:H43I07.2 InParanoid:Q9UAY9 NextBio:902702 Uniprot:Q9UAY9
        Length = 366

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 70/150 (46%), Positives = 92/150 (61%)

Query:     2 DKNLRLKYEPCEQD---TLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIG 57
             +K +    EP E D    L F++ + CTK             +Y    V+++  +WVPI 
Sbjct:   141 EKGVDCDEEP-EGDPAKNLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIA 199

Query:    58 SQGDMYKSSDVGP--IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
              Q   + + +  P  + DDIL+AKLRPG EI+ +  AVK IGRDHAKFSPVATA YRLLP
Sbjct:   200 DQKTQF-TEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLP 258

Query:   116 KITLTQEIEGEMAQRLQTMFSPGVISIEKK 145
              I L  EI GE A+RL+++FS GVI+IEKK
Sbjct:   259 TIRLNAEISGEAAERLKSVFSEGVIAIEKK 288


>POMBASE|SPBC1289.07c [details] [associations]
            symbol:rpc40 "DNA-directed RNA polymerase I and III
            subunit Rpc40" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
            promoter" evidence=IGI] [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=IGI] [GO:0006995 "cellular
            response to nitrogen starvation" evidence=IMP] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0070317 "negative
            regulation of G0 to G1 transition" evidence=IMP] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IGI]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 PomBase:SPBC1289.07c GO:GO:0005829
            GO:GO:0070317 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0006995 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
            GO:GO:0005666 GO:GO:0003899 eggNOG:COG0202 HOGENOM:HOG000230845
            KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            EMBL:AF082512 EMBL:AB021859 PIR:T39358 RefSeq:NP_596831.1
            ProteinModelPortal:O94616 DIP:DIP-29538N STRING:O94616
            EnsemblFungi:SPBC1289.07c.1 GeneID:2539663 KEGG:spo:SPBC1289.07c
            OMA:TVSRECL OrthoDB:EOG4VX5F0 NextBio:20800817 Uniprot:O94616
        Length = 348

 Score = 269 (99.8 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 56/136 (41%), Positives = 79/136 (58%)

Query:    13 EQDTLQFQLKIKCT-KXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             + DT+ F L  KC               +Y   +V++ D+ W P G Q + +  + +  +
Sbjct:   135 DYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVV 194

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
             + DI++AKLRPG EID+   A+  IG+DHAKFSPVATA YRLLP I +   IEGE A + 
Sbjct:   195 NPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKF 254

Query:   132 QTMFSPGVISIEKKPN 147
             Q  F  GVI +E+ P+
Sbjct:   255 QKCFPKGVIELEEGPD 270

 Score = 38 (18.4 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query:     3 KNLRLKYEPCEQDTLQFQL 21
             KNL++     +Q+T+ F++
Sbjct:    44 KNLKVSITSLDQETMVFEI 62


>CGD|CAL0005950 [details] [associations]
            symbol:RPC40 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
            complex" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III
            complex" evidence=IEA] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=IEA] [GO:0070317 "negative
            regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
            transcription from RNA polymerase III promoter" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 CGD:CAL0005950 GO:GO:0003677
            GO:GO:0006351 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0003899
            eggNOG:COG0202 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 RefSeq:XP_714923.1 RefSeq:XP_714986.1
            ProteinModelPortal:Q59ZF5 STRING:Q59ZF5 GeneID:3643382
            GeneID:3643427 KEGG:cal:CaO19.11048 KEGG:cal:CaO19.3564
            Uniprot:Q59ZF5
        Length = 369

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 60/151 (39%), Positives = 85/151 (56%)

Query:     1 MDKNLRLKYEPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQ 59
             +D+ + +     E +T+   L + C+K             +Y+   V+ KD ++ P G+Q
Sbjct:   151 VDETVDINDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYKNSHVYAKDFKFEPHGNQ 210

Query:    60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
              + +K + V P   DIL+AKLRPG EI +    V  IG DHAKFSPVATA YRLLP I +
Sbjct:   211 EEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDI 270

Query:   120 TQEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
              + I GE+A++ Q  F PGVI I+    A V
Sbjct:   271 KEPITGELAKKFQKCFPPGVIGIDANGKAYV 301


>SGD|S000006314 [details] [associations]
            symbol:RPC40 "RNA polymerase subunit AC40" species:4932
            "Saccharomyces cerevisiae" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
            promoter" evidence=IC] [GO:0005666 "DNA-directed RNA polymerase III
            complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
            SGD:S000006314 GO:GO:0003677 EMBL:BK006949 GO:GO:0006360
            EMBL:U32445 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
            Reactome:REACT_83470 Reactome:REACT_87991 GO:GO:0042797
            eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
            KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            OMA:TVSRECL OrthoDB:EOG4VX5F0 EMBL:M15499 PIR:A25968
            RefSeq:NP_015435.1 ProteinModelPortal:P07703 SMR:P07703 DIP:DIP-17N
            IntAct:P07703 MINT:MINT-395916 STRING:P07703 PaxDb:P07703
            PeptideAtlas:P07703 EnsemblFungi:YPR110C GeneID:856226
            KEGG:sce:YPR110C CYGD:YPR110c NextBio:981464 Genevestigator:P07703
            GermOnline:YPR110C Uniprot:P07703
        Length = 335

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 58/145 (40%), Positives = 83/145 (57%)

Query:     1 MDKNLRLKYEPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQ 59
             +D NL    +  +++T+   L +KCT+             +Y    V+ +D+++ P G Q
Sbjct:   116 VDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQ 175

Query:    60 GDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITL 119
                +    V P   DIL+AKLRPG EI +    +  IG DHAKFSPV+TA YRLLP+I +
Sbjct:   176 STTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI 235

Query:   120 TQEIEGEMAQRLQTMFSPGVISIEK 144
              Q I+GE A+R Q  F PGVI I++
Sbjct:   236 LQPIKGESARRFQKCFPPGVIGIDE 260


>ASPGD|ASPL0000043748 [details] [associations]
            symbol:AN2415 species:162425 "Emericella nidulans"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA
            polymerase III complex" evidence=IEA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0006995 "cellular response to nitrogen
            starvation" evidence=IEA] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=IEA] [GO:0070317 "negative
            regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
            transcription from RNA polymerase III promoter" evidence=IEA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 EMBL:BN001307
            GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000039 eggNOG:COG0202
            HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 OMA:TVSRECL OrthoDB:EOG4VX5F0 RefSeq:XP_660019.1
            ProteinModelPortal:Q5BAL5 STRING:Q5BAL5
            EnsemblFungi:CADANIAT00009122 GeneID:2874697 KEGG:ani:AN2415.2
            Uniprot:Q5BAL5
        Length = 373

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 52/133 (39%), Positives = 79/133 (59%)

Query:    13 EQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSD-VGP 70
             + +T+  +L ++CTK             +Y+   V+ KDI + P+G Q + +     +  
Sbjct:   147 DYNTVVLRLDVECTKNPNASRDETDPRKLYKNAHVYAKDIVFHPVGRQEEFFTGEGAIRA 206

Query:    71 IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
             ++ DIL+AKLRPG +I++ M  +K IG DHAKFSPVATA YRL+P I + + I GE A++
Sbjct:   207 VNPDILVAKLRPGQKIELEMHCIKGIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKK 266

Query:   131 LQTMFSPGVISIE 143
                 F  GVI +E
Sbjct:   267 FAKCFPKGVIGLE 279


>UNIPROTKB|G4MQN0 [details] [associations]
            symbol:MGG_09284 "DNA-directed RNA polymerase I and III
            subunit RPAC1" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CM001231
            GO:GO:0043581 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
            SUPFAM:SSF56553 SUPFAM:SSF55257 RefSeq:XP_003709929.1
            EnsemblFungi:MGG_09284T0 GeneID:2680208 KEGG:mgr:MGG_09284
            Uniprot:G4MQN0
        Length = 373

 Score = 240 (89.5 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 56/132 (42%), Positives = 76/132 (57%)

Query:    15 DTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSD--VGPI 71
             +T+  +L +KCT+              Y K  V+  DI++VP G Q D Y S D  + P+
Sbjct:   148 NTVNLRLNVKCTRNPDAKPGENDPNKAYIKPNVYASDIEFVPAGQQTD-YFSGDGAIVPV 206

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRL 131
             + DILIAKLRPG  ID+ M A    G DHAKFSPV TA YRL+P I + + I G  A++ 
Sbjct:   207 NPDILIAKLRPGQGIDLEMHAHIGYGWDHAKFSPVCTASYRLMPIIDIVKPIVGADAEKF 266

Query:   132 QTMFSPGVISIE 143
             +  F  GVI ++
Sbjct:   267 RDCFPDGVIRLQ 278


>UNIPROTKB|E7EQB9 [details] [associations]
            symbol:POLR1C "DNA-directed RNA polymerases I and III
            subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
            GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
            IPI:IPI00552946 ProteinModelPortal:E7EQB9 SMR:E7EQB9
            Ensembl:ENST00000372344 ArrayExpress:E7EQB9 Bgee:E7EQB9
            Uniprot:E7EQB9
        Length = 296

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/105 (41%), Positives = 65/105 (61%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + W+P+G+Q D++    +
Sbjct:   131 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTI 190

Query:    69 GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFS-PVATAFYR 112
              P+HDDILIA+LRPG EID+ M  VK IG+  A+ + P    F R
Sbjct:   191 RPVHDDILIAQLRPGQEIDLLMHCVKGIGKKVARVANPRLDTFSR 235


>DICTYBASE|DDB_G0282339 [details] [associations]
            symbol:rpa5 "RNA polymerase III subunit"
            species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006383 "transcription from RNA polymerase III
            promoter" evidence=ISS] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
            polymerase III complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 dictyBase:DDB_G0282339
            EMBL:AAFI02000047 GenomeReviews:CM000152_GR GO:GO:0003677
            GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
            GO:GO:0003899 eggNOG:COG0202 KO:K03027 OMA:GKCQRFL
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            RefSeq:XP_640267.1 ProteinModelPortal:Q54SN4 STRING:Q54SN4
            PRIDE:Q54SN4 EnsemblProtists:DDB0216288 GeneID:8623528
            KEGG:ddi:DDB_G0282339 ProtClustDB:CLSZ2729016 Uniprot:Q54SN4
        Length = 345

 Score = 223 (83.6 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 55/143 (38%), Positives = 76/143 (53%)

Query:     4 NLRL-KYEPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDM 62
             N +L   E   +DTL FQLK+KC K            +  KH +      WVP   Q +M
Sbjct:   133 NFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETAL-SKHLI------WVPTQDQEEM 185

Query:    63 YKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
             + + +    P+ DDI I KLRPG  ID+  +  K+IGR+H K+SPV TA YRL P I++ 
Sbjct:   186 FPNEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQPVISVD 245

Query:   121 QEIEGEMAQRLQTMFSPGVISIE 143
             + I+G+ A +L       V  IE
Sbjct:   246 KSIKGDKANQLLEKCPKKVFDIE 268


>TAIR|locus:2036494 [details] [associations]
            symbol:RPAC43 "RNA polymerase I subunit 43" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0006626 "protein
            targeting to mitochondrion" evidence=RCA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677
            GO:GO:0006351 EMBL:AC002292 GO:GO:0003899 eggNOG:COG0202
            HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 OMA:TVSRECL EMBL:L34773 EMBL:AF386969 EMBL:BT001161
            IPI:IPI00538979 PIR:D96631 RefSeq:NP_176261.1 UniGene:At.8271
            ProteinModelPortal:Q39216 SMR:Q39216 STRING:Q39216 PaxDb:Q39216
            PRIDE:Q39216 EnsemblPlants:AT1G60620.1 GeneID:842356
            KEGG:ath:AT1G60620 TAIR:At1g60620 InParanoid:Q39216
            PhylomeDB:Q39216 ProtClustDB:CLSN2914384 ArrayExpress:Q39216
            Genevestigator:Q39216 Uniprot:Q39216
        Length = 385

 Score = 191 (72.3 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 51/146 (34%), Positives = 72/146 (49%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMY---------EKHKVFTKDIQWVPIGSQG 60
             +P E++T+ F+L +KC K             +         E     T    +       
Sbjct:   162 QPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSELIKESGGSTTTPKTYTSFNHSQ 221

Query:    61 DMYKSSDVGPIHD---DILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
             D +      PI     DILIAKL PG EI++   AVK IG+ HAK+SPVATA+YR+LP++
Sbjct:   222 DSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEV 281

Query:   118 TLTQEIEGEMAQRLQTMFSPGVISIE 143
              L +E EG+ A+ L  +    V  IE
Sbjct:   282 VLLKEFEGKHAEELVKVCPKKVFDIE 307


>TAIR|locus:2025855 [details] [associations]
            symbol:ATRPAC42 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 SMART:SM00662
            EMBL:CP002684 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
            EMBL:AC079675 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
            SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AK226775 IPI:IPI00518314
            PIR:H96633 RefSeq:NP_176282.1 RefSeq:NP_849833.1 UniGene:At.8270
            ProteinModelPortal:Q9C6C2 SMR:Q9C6C2 STRING:Q9C6C2 PRIDE:Q9C6C2
            EnsemblPlants:AT1G60850.1 EnsemblPlants:AT1G60850.2 GeneID:842377
            KEGG:ath:AT1G60850 TAIR:At1g60850 InParanoid:Q9C6C2 OMA:EHAKHQG
            PhylomeDB:Q9C6C2 ProtClustDB:CLSN2681820 Genevestigator:Q9C6C2
            Uniprot:Q9C6C2
        Length = 375

 Score = 190 (71.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 49/143 (34%), Positives = 74/143 (51%)

Query:    13 EQDTLQFQLKIKCTKXXXXXXXXXXXXMY---------EKHKVFTKDIQWVPIG-SQGDM 62
             E++T+ F+L +KC K             +         E     +K   +     SQ  +
Sbjct:   158 EKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSL 217

Query:    63 --YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLT 120
               + ++ + P   DILIAKL PG EI++   AVK IG+ HAK+SPV TA+YR+ P++ L 
Sbjct:   218 PEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLR 277

Query:   121 QEIEGEMAQRLQTMFSPGVISIE 143
              E+E E+A+RL  +    V  IE
Sbjct:   278 GEVEDELAERLVNVCPQNVFDIE 300


>TAIR|locus:2047198 [details] [associations]
            symbol:NRPE3B species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IPI]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IPI] InterPro:IPR001514 InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351
            GO:GO:0003899 KO:K03011 EMBL:AC006920 GO:GO:0000419 GO:GO:0005665
            eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            HOGENOM:HOG000230844 ProtClustDB:CLSN2683582 EMBL:L34771
            EMBL:BT005715 EMBL:BT006072 IPI:IPI00547850 PIR:E84528 PIR:S71177
            RefSeq:NP_179142.1 UniGene:At.40419 ProteinModelPortal:Q39212
            SMR:Q39212 IntAct:Q39212 STRING:Q39212 PaxDb:Q39212 PRIDE:Q39212
            EnsemblPlants:AT2G15400.1 GeneID:816032 KEGG:ath:AT2G15400
            TAIR:At2g15400 InParanoid:Q39212 OMA:GFVYYKY PhylomeDB:Q39212
            Genevestigator:Q39212 GermOnline:AT2G15400 Uniprot:Q39212
        Length = 319

 Score = 134 (52.2 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 38/114 (33%), Positives = 53/114 (46%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E CE  +++F L  KC              +Y      T  + +    S  D   SS+  
Sbjct:    97 EHCEFCSVEFPLSAKCV--TDQTLDVTSRDLYSADPTVTP-VDFTSNSSTSD---SSE-- 148

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
               H  I+IAKLR G E+ +   A K IG+DHAK+SP AT  Y   P I + +E+
Sbjct:   149 --HKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEM 200


>DICTYBASE|DDB_G0292244 [details] [associations]
            symbol:rpb3 "RNA polymerase II core subunit"
            species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
            dictyBase:DDB_G0292244 GenomeReviews:CM000155_GR GO:GO:0003677
            GO:GO:0006366 GO:GO:0003899 KO:K03011 EMBL:AAFI02000188
            GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 OMA:KWQAGVA RefSeq:XP_629750.1
            ProteinModelPortal:Q54DH7 STRING:Q54DH7 PRIDE:Q54DH7
            EnsemblProtists:DDB0216289 GeneID:8628579 KEGG:ddi:DDB_G0292244
            ProtClustDB:CLSZ2728736 Uniprot:Q54DH7
        Length = 302

 Score = 118 (46.6 bits), Expect = 9.8e-07, P = 9.8e-07
 Identities = 34/119 (28%), Positives = 57/119 (47%)

Query:    12 CEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             C+Q +++ +L +KCT+                  + +++   +P+ SQ     SS+    
Sbjct:    98 CDQCSVELRLNVKCTENRPRDVTSSD--------LLSQNSAVIPVSSQ---VTSSNS--- 143

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQR 130
               +I I KLR G EI +   A K +G++HAK+SP   A Y+  P I L Q    E+  +
Sbjct:   144 EQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQ 202


>TAIR|locus:2047168 [details] [associations]
            symbol:NRPB3 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000418 "DNA-directed RNA
            polymerase IV complex" evidence=IPI] [GO:0000419 "DNA-directed RNA
            polymerase V complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IPI] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005730 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03011
            EMBL:AC006920 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
            eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            EMBL:L34770 EMBL:AY063965 EMBL:AY096406 IPI:IPI00544466 PIR:S71176
            RefSeq:NP_179145.1 UniGene:At.27427 ProteinModelPortal:Q39211
            SMR:Q39211 IntAct:Q39211 STRING:Q39211 PaxDb:Q39211 PRIDE:Q39211
            EnsemblPlants:AT2G15430.1 GeneID:816035 KEGG:ath:AT2G15430
            TAIR:At2g15430 HOGENOM:HOG000230844 InParanoid:Q39211 OMA:KWQAGVA
            PhylomeDB:Q39211 ProtClustDB:CLSN2683582 Genevestigator:Q39211
            GermOnline:AT2G15430 Uniprot:Q39211
        Length = 319

 Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 34/112 (30%), Positives = 52/112 (46%)

Query:    12 CEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             CE  +++F+L  KC              +Y      T  + +    S  D   SS+    
Sbjct:    99 CEFCSVEFRLSSKCV--TDQTLDVTSRDLYSADPTVTP-VDFTIDSSVSD---SSE---- 148

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
             H  I+I KLR G E+ +   A K IG+DHAK+SP AT  +   P I + +++
Sbjct:   149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDM 200


>FB|FBgn0026373 [details] [associations]
            symbol:RpII33 "RNA polymerase II 33kD subunit" species:7227
            "Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=ISS;IDA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0034605 "cellular response to heat" evidence=IEP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005703 "polytene chromosome puff"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005875
            "microtubule associated complex" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
            GO:GO:0005737 GO:GO:0005875 GO:GO:0034605 EMBL:AE014134
            GO:GO:0003677 GO:GO:0006366 GO:GO:0005703 GO:GO:0003899 KO:K03011
            GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
            EMBL:AY060644 EMBL:AJ133650 RefSeq:NP_477419.1 UniGene:Dm.3412
            HSSP:P16370 SMR:O97183 IntAct:O97183 MINT:MINT-801436 STRING:O97183
            EnsemblMetazoa:FBtr0080544 GeneID:34796 KEGG:dme:Dmel_CG7885
            UCSC:CG7885-RA CTD:34796 FlyBase:FBgn0026373 InParanoid:O97183
            OrthoDB:EOG441NT4 GenomeRNAi:34796 NextBio:790263 Uniprot:O97183
        Length = 275

 Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 28/104 (26%), Positives = 51/104 (49%)

Query:    12 CEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             C + +++F L +KC++                 KV       +P+ S+    + ++ G  
Sbjct:    94 CPECSVEFTLDVKCSEEQTRHVTTADLKS-SNAKV-------LPVTSRNQGEEDNEYGES 145

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
             +D+ILI KLR G E+ +  +A K  G++HAK++P A   +   P
Sbjct:   146 NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDP 189


>UNIPROTKB|D6RDJ3 [details] [associations]
            symbol:POLR1C "DNA-directed RNA polymerases I and III
            subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
            InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
            Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
            GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
            OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 HGNC:HGNC:20194 IPI:IPI00966384
            ProteinModelPortal:D6RDJ3 SMR:D6RDJ3 Ensembl:ENST00000428025
            ArrayExpress:D6RDJ3 Bgee:D6RDJ3 Uniprot:D6RDJ3
        Length = 124

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXX-XXMYEKHKVFTKDIQWVPIG 57
             E  E DTLQF+L+++CT+             +Y  HKV+T+ + W+P+G
Sbjct:    76 EGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLG 124


>UNIPROTKB|I3LCH3 [details] [associations]
            symbol:POLR2C "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
            GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:FP326735
            RefSeq:XP_003355849.1 Ensembl:ENSSSCT00000024584 GeneID:100620737
            KEGG:ssc:100620737 Uniprot:I3LCH3
        Length = 275

 Score = 105 (42.0 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + +   + +P+ S+      SD  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNSPRVIPVTSRNRDNDPSDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>UNIPROTKB|E1BV97 [details] [associations]
            symbol:POLR2C "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0015630
            "microtubule cytoskeleton" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
            GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
            GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AADN02065759
            IPI:IPI00579063 RefSeq:XP_414001.1 UniGene:Gga.11991 PRIDE:E1BV97
            Ensembl:ENSGALT00000001768 GeneID:415635 KEGG:gga:415635
            NextBio:20819207 Uniprot:E1BV97
        Length = 275

 Score = 104 (41.7 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 28/114 (24%), Positives = 52/114 (45%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + + + + +P+ S+      +D  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNNPRVIPVTSRSRDNDPNDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>UNIPROTKB|Q3T0Q3 [details] [associations]
            symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
            species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0015630 "microtubule
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
            GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665 eggNOG:COG0202
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            HOGENOM:HOG000230844 EMBL:BT030680 EMBL:BC102301 IPI:IPI00690694
            RefSeq:NP_001029384.1 UniGene:Bt.49139 ProteinModelPortal:Q3T0Q3
            STRING:Q3T0Q3 PRIDE:Q3T0Q3 Ensembl:ENSBTAT00000002420 GeneID:504452
            KEGG:bta:504452 CTD:5432 GeneTree:ENSGT00640000091532
            HOVERGEN:HBG000897 InParanoid:Q3T0Q3 OMA:NQPTVKI OrthoDB:EOG437RFC
            NextBio:20866665 Uniprot:Q3T0Q3
        Length = 275

 Score = 102 (41.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + +   + +P+ S+      +D  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNSPRVIPVTSRNRDNDPNDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>UNIPROTKB|E2RQ42 [details] [associations]
            symbol:POLR2C "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0015630 "microtubule cytoskeleton"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 GO:GO:0015630
            GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
            GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AAEX03001573
            EMBL:AAEX03001572 RefSeq:XP_535283.2 ProteinModelPortal:E2RQ42
            PRIDE:E2RQ42 Ensembl:ENSCAFT00000013863 GeneID:478109
            KEGG:cfa:478109 NextBio:20853480 Uniprot:E2RQ42
        Length = 275

 Score = 102 (41.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + +   + +P+ S+      +D  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNSPRVIPVTSRNRDNDPNDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>UNIPROTKB|P19387 [details] [associations]
            symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=TAS]
            [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0015630 "microtubule
            cytoskeleton" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
            InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 Reactome:REACT_116125
            GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 Reactome:REACT_1675
            GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
            EMBL:AC004382 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
            Reactome:REACT_1892 GO:GO:0003899 KO:K03011 GO:GO:0005665
            eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            CTD:5432 HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC
            EMBL:J05448 EMBL:AF008443 EMBL:AJ224143 EMBL:AJ224144 EMBL:BC000409
            EMBL:BC003159 EMBL:BC028157 IPI:IPI00018288 PIR:A36264
            RefSeq:NP_116558.1 UniGene:Hs.79402 ProteinModelPortal:P19387
            SMR:P19387 DIP:DIP-32911N IntAct:P19387 MINT:MINT-270053
            STRING:P19387 PhosphoSite:P19387 DMDM:3915850 PaxDb:P19387
            PeptideAtlas:P19387 PRIDE:P19387 DNASU:5432 Ensembl:ENST00000219252
            GeneID:5432 KEGG:hsa:5432 UCSC:uc002elt.1 GeneCards:GC16P057496
            HGNC:HGNC:9189 HPA:HPA040919 HPA:HPA041826 MIM:180663
            neXtProt:NX_P19387 PharmGKB:PA33509 InParanoid:P19387
            PhylomeDB:P19387 GenomeRNAi:5432 NextBio:21017 ArrayExpress:P19387
            Bgee:P19387 CleanEx:HS_POLR2C Genevestigator:P19387
            GermOnline:ENSG00000102978 Uniprot:P19387
        Length = 275

 Score = 102 (41.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + +   + +P+ S+      +D  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNSPRVIPVTSRNRDNDPNDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>RGD|1306935 [details] [associations]
            symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide C"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 RGD:1306935 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
            KO:K03011 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
            SUPFAM:SSF55257 HOGENOM:HOG000230844 CTD:5432
            GeneTree:ENSGT00640000091532 HOVERGEN:HBG000897 OMA:NQPTVKI
            EMBL:CH474006 EMBL:BC089905 IPI:IPI00476352 RefSeq:NP_001012491.1
            UniGene:Rn.139399 SMR:Q5EB90 STRING:Q5EB90
            Ensembl:ENSRNOT00000021639 GeneID:361365 KEGG:rno:361365
            UCSC:RGD:1306935 NextBio:676047 Genevestigator:Q5EB90
            Uniprot:Q5EB90
        Length = 275

 Score = 102 (41.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + +   + +P+ S+      +D  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNSPRVIPVTSRNRDNDPNDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>UNIPROTKB|D4A8A8 [details] [associations]
            symbol:Polr2c "Protein Polr2c" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR001514
            InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
            InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
            SMART:SM00662 RGD:1306935 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
            GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 Gene3D:2.170.120.12
            SUPFAM:SSF56553 SUPFAM:SSF55257 OrthoDB:EOG437RFC IPI:IPI00779676
            Ensembl:ENSRNOT00000061255 ArrayExpress:D4A8A8 Uniprot:D4A8A8
        Length = 330

 Score = 102 (41.0 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 28/114 (24%), Positives = 51/114 (44%)

Query:    10 EPCEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
             E C + +++F L ++C +                  + +   + +P+ S+      +D  
Sbjct:    92 EFCPECSVEFTLDVRCNEDQTRHVTS--------RDLISNSPRVIPVTSRNRDNDPNDYV 143

Query:    70 PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
                DDILI KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   144 E-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>ZFIN|ZDB-GENE-030131-6609 [details] [associations]
            symbol:polr2c "polymerase (RNA) II (DNA directed)
            polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR009025 InterPro:IPR011261
            InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
            SMART:SM00662 ZFIN:ZDB-GENE-030131-6609 GO:GO:0003677 GO:GO:0006351
            EMBL:AL929309 GO:GO:0003899 KO:K03011 eggNOG:COG0202
            Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
            HOGENOM:HOG000230844 CTD:5432 GeneTree:ENSGT00640000091532
            HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC EMBL:BC046047
            IPI:IPI00484221 RefSeq:NP_001161428.1 UniGene:Dr.81878
            STRING:Q7ZV11 Ensembl:ENSDART00000043812 GeneID:334669
            KEGG:dre:334669 InParanoid:Q7ZV11 NextBio:20810502 Uniprot:Q7ZV11
        Length = 275

 Score = 99 (39.9 bits), Expect = 0.00050, P = 0.00050
 Identities = 26/112 (23%), Positives = 51/112 (45%)

Query:    12 CEQDTLQFQLKIKCTKXXXXXXXXXXXXMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
             C + +++  L ++CT+                  + + + + +P+ S+      +D    
Sbjct:    94 CPECSVELTLDVRCTEDQTRHVTS--------RDLLSNNPRVIPVTSRSRDNDPNDYVE- 144

Query:    72 HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEI 123
              DDIL+ KLR G E+ +  +A K  G++HAK++P A   +   P   L   +
Sbjct:   145 QDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTV 196


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       140   0.00091  102 3  11 22  0.42    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  33
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.12u 0.09s 12.21t   Elapsed:  00:00:01
  Total cpu time:  12.12u 0.09s 12.21t   Elapsed:  00:00:01
  Start:  Thu Aug 15 13:31:48 2013   End:  Thu Aug 15 13:31:49 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with polr1c polr1c polr1c polymerase (RNA) I polypeptide C	gene_product from Danio rerio	1.7e-38
BLAST match view associations BLAST with Polr1c Polr1c Polr1c polymerase (RNA) I polypeptide C	protein from Mus musculus	1.7e-38
BLAST match view associations BLAST with POLR1C POLR1C POLR1C Uncharacterized protein	protein from Gallus gallus	2.1e-36
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Homo sapiens	1.9e-35
BLAST match view associations BLAST with RPA39 RPA39 RPA39 Uncharacterized protein	protein from Sus scrofa	4.0e-35
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Bos taurus	6.5e-35
BLAST match view associations BLAST with POLR1C POLR1C POLR1C Uncharacterized protein	protein from Canis lupus familiaris	8.3e-35
BLAST match view associations BLAST with CG3756 CG3756 CG3756	protein from Drosophila melanogaster	1.3e-34
BLAST match view associations BLAST with rpac-40 rpac-40 rpac-40	gene from Caenorhabditis elegans	5.0e-28
BLAST match view associations BLAST with RPC40 RPC40 RPC40	gene_product from Candida albicans	4.2e-24
BLAST match view associations BLAST with RPC40 RPC40 RPC40 RNA polymerase subunit AC40	gene from Saccharomyces cerevisiae	5.3e-24
BLAST match view associations BLAST with MGG_09284 MGG_09284 MGG_09284 DNA-directed RNA polymerase I and III subunit RPAC1	protein from Magnaporthe oryzae 70-15	3.8e-20
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Homo sapiens	3.1e-19
BLAST match view associations BLAST with rpa5 rpa5 rpa5 RNA polymerase III subunit	gene from Dictyostelium discoideum	2.2e-18
BLAST match view associations BLAST with RPAC43 RPAC43 RPAC43 AT1G60620	protein from Arabidopsis thaliana	1.6e-14
BLAST match view associations BLAST with ATRPAC42 ATRPAC42 ATRPAC42 AT1G60850	protein from Arabidopsis thaliana	1.9e-14
BLAST match view associations BLAST with NRPE3B NRPE3B NRPE3B AT2G15400	protein from Arabidopsis thaliana	1.9e-08
BLAST match view associations BLAST with rpb3 rpb3 rpb3 RNA polymerase II core subunit	gene from Dictyostelium discoideum	9.8e-07
BLAST match view associations BLAST with NRPB3 NRPB3 NRPB3 AT2G15430	protein from Arabidopsis thaliana	1.1e-06
BLAST match view associations BLAST with RpII33 RpII33 RpII33 RNA polymerase II 33kD subunit	protein from Drosophila melanogaster	1.3e-06
BLAST match view associations BLAST with POLR1C POLR1C POLR1C DNA-directed RNA polymerases I and III subunit RPAC1	protein from Homo sapiens	1.5e-05
BLAST match view associations BLAST with LOC100620737 LOC100620737 LOC100620737 Uncharacterized protein	protein from Sus scrofa	2.2e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C Uncharacterized protein	protein from Gallus gallus	2.8e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C DNA-directed RNA polymerase II subunit RPB3	protein from Bos taurus	4.7e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C Uncharacterized protein	protein from Canis lupus familiaris	4.7e-05
BLAST match view associations BLAST with POLR2C POLR2C POLR2C DNA-directed RNA polymerase II subunit RPB3	protein from Homo sapiens	4.7e-05
BLAST match view associations BLAST with Polr2c Polr2c Polr2c polymerase (RNA) II (DNA directed) polypeptide C	gene from Rattus norvegicus	4.7e-05
BLAST match view associations BLAST with polr2c polr2c polr2c polymerase (RNA) II (DNA directed) polypeptide C	gene_product from Danio rerio	0.00050