RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1865
         (152 letters)



>gnl|CDD|132910 cd07032, RNAP_I_II_AC40, AC40 subunit of Eukaryotic RNA polymerase
           (RNAP) I and RNAP III.  The eukaryotic AC40 subunit of
           RNA polymerase (RNAP) I and RNAP III is involved in the
           assembly of RNAP subunits. RNAP is a large multi-subunit
           complex responsible for the synthesis of RNA. It is the
           principal enzyme of the transcription process, and is a
           final target in many regulatory pathways that control
           gene expression in all living cells. At least three
           distinct RNAP complexes are found in eukaryotic nuclei:
           RNAP I, RNAP II, and RNAP III. RNAP I is responsible for
           the synthesis of ribosomal RNA precursor, while RNAP III
           functions in the synthesis of 5S and tRNA. The AC40
           subunit is the equivalent of the RPB3 subunit of RNAP
           II. The RPB3 subunit is similar to the bacterial RNAP
           alpha subunit in that it contains two subdomains: one
           subdomain is similar the eukaryotic Rpb11/AC19/archaeal
           L subunit which is involved in dimerization; and the
           other is an inserted beta sheet subdomain. The RPB3
           subunit heterodimerizes with the RPB11 subunit, and
           together with RPB10 and RPB12, anchors the two largest
           subunits, RPB1 and RPB2, and stabilizes their
           association. The homology of AC40 to RPB3 suggests a
           similar function. The AC40 subunit is likely to
           associate with the RPB11 counterpart, AC19, to form a
           heterodimer, which stabilizes the association of the two
           largest subunits of RNAP I and RNAP III.
          Length = 291

 Score =  201 bits (513), Expect = 1e-65
 Identities = 76/136 (55%), Positives = 101/136 (74%), Gaps = 1/136 (0%)

Query: 10  EPCEQDTLQFQLKIKCTKSASFSHSSH-ADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
           EP E++TL F+LK+KCT++ +    S   D++Y  HKV++ D++WVPIGSQ   +  + +
Sbjct: 83  EPTEENTLVFELKVKCTRNPNAPKDSTDPDELYINHKVYSGDLKWVPIGSQEKRFADNPI 142

Query: 69  GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMA 128
            P+H DILIAKLRPG EID+ +  VK IG+DHAKFSPVATA YRLLP+ITL + I GE A
Sbjct: 143 RPVHPDILIAKLRPGQEIDLELHCVKGIGKDHAKFSPVATASYRLLPEITLLKPITGEDA 202

Query: 129 QRLQTMFSPGVISIEK 144
           ++LQ  F PGVI IE+
Sbjct: 203 EKLQKCFPPGVIDIEE 218


>gnl|CDD|214766 smart00662, RPOLD, RNA polymerases D.  DNA-directed RNA polymerase
           subunit D and bacterial alpha chain.
          Length = 224

 Score =   99 bits (250), Expect = 6e-27
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 26/134 (19%)

Query: 10  EPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVG 69
           E CE+ ++   L +K                     V   D++              DV 
Sbjct: 72  EGCEKCSVTLTLDVKGPGE-----------------VTAGDLKSDS---------DPDVE 105

Query: 70  PIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
            ++ DI IAKLR G E+++   A K  G  HAK+SPV+T  YR +P+I +          
Sbjct: 106 IVNPDIPIAKLREGQELELEARAEKGRGYVHAKWSPVSTVEYRYIPRIPVDASFSPVDRV 165

Query: 130 RLQTMFSPGVISIE 143
             Q      V   +
Sbjct: 166 AYQVECPRVVQRTD 179


>gnl|CDD|132906 cd07028, RNAP_RPB3_like, RPB3 subunit of RNA polymerase.  The
           eukaryotic RPB3 subunit of RNA polymerase (RNAP), as
           well as its archaeal (D subunit) and bacterial (alpha
           subunit) counterparts, is involved in the assembly of
           RNAP subunits. RNAP is a large multi-subunit complex
           responsible for the synthesis of RNA. It is the
           principal enzyme of the transcription process, and is a
           final target in many regulatory pathways that control
           gene expression in all living cells. At least three
           distinct RNAP complexes are found in eukaryotic nuclei: 
           RNAP I, RNAP II, and RNAP III, for the synthesis of
           ribosomal RNA precursor, mRNA precursor, and 5S and
           tRNA, respectively. A single distinct RNAP complex is
           found in prokaryotes and archaea, which may be
           responsible for the synthesis of all RNAs. The RPB3
           subunit is similar to the bacterial RNAP alpha subunit
           in that it contains two subdomains: one subdomain is
           similar to the eukaryotic Rpb11/AC19/archaeal L subunit
           which is involved in dimerization; and the other is an
           inserted beta sheet subdomain. The assembly of the two
           largest eukaryotic RNAP subunits that provide most of
           the enzyme's catalytic functions depends on the presence
           of RPB3/RPB11 heterodimer subunits. This is also true
           for the archaeal (D/L subunits) and bacterial (alpha
           subunit) counterparts.
          Length = 212

 Score = 96.9 bits (241), Expect = 7e-26
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 6   RLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKS 65
           R   E CE +    +  +  T  A                V++KD+  V      ++   
Sbjct: 77  RSPEEDCECEDHCDKCSVVLTLQAFAESE-------STTNVYSKDLVIVSNLMGRNI--- 126

Query: 66  SDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLP 115
               PI  DILI KLR G EI +T  A K IG++HAKF PVA   +R  P
Sbjct: 127 --GHPIIQDILICKLRKGQEIKLTCVAKKGIGKEHAKFGPVAAIEFRYDP 174


>gnl|CDD|132909 cd07031, RNAP_II_RPB3, RPB3 subunit of Eukaryotic RNA polymerase
           II.  The eukaryotic RPB3 subunit of RNA polymerase
           (RNAP) II is involved in the assembly of RNAP subunits.
           RNAP is a large multi-subunit complex responsible for
           the synthesis of RNA. It is the principal enzyme of the
           transcription process, and is a final target in many
           regulatory pathways that control gene expression in all
           living cells. At least three distinct RNAP complexes are
           found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP
           III. RNAP II is responsible for the synthesis of mRNA
           precursor. The RPB3 subunit is similar to the bacterial
           RNAP alpha subunit in that it contains two subdomains:
           one subdomain is similar the eukaryotic
           Rpb11/AC19/archaeal L subunit which is involved in
           dimerization, and the other is an inserted beta sheet
           subdomain. The RPB3 subunit heterodimerizes with the
           RPB11 subunit, and together with RPB10 and RPB12,
           anchors the two largest subunits, RPB1 and RPB2, and
           stabilizes their association.
          Length = 265

 Score = 69.9 bits (172), Expect = 4e-15
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 12  CEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDVGPI 71
           C++ +++  L +KCT   +      + D+        K    VP+  + D    S+    
Sbjct: 88  CDKCSVELTLDVKCTGDQTRE--VTSRDLV---SSGPKVNDVVPVPIRND----SEDNGE 138

Query: 72  HDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQE 122
            D ILI KLR G E+ +   A K IG++HAK+SP A   +   P   L   
Sbjct: 139 EDGILIVKLRKGQELKLRCIAKKGIGKEHAKWSPTAAVTFEYDPDNALRHT 189


>gnl|CDD|110031 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA insert domain.
           Members of this family include: alpha subunit from
           eubacteria alpha subunits from chloroplasts Rpb3
           subunits from eukaryotes RpoD subunits from archaeal.
          Length = 117

 Score = 66.1 bits (162), Expect = 7e-15
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 28/100 (28%)

Query: 3   KNLRLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDM 62
           K L  K E CE+ ++   L +K                    +V   D++          
Sbjct: 28  KELVCKIEGCEECSVTLTLDVKGPG-----------------EVTAGDLES--------- 61

Query: 63  YKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAK 102
               DV  ++ DILIA LR G E+++  +A K  G  HAK
Sbjct: 62  --DPDVEIVNPDILIATLRKGQELELEAYAKKGRGYVHAK 99


>gnl|CDD|223280 COG0202, RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit [Transcription].
          Length = 317

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 3   KNLRLKYEPCEQDTLQFQLKIKCTKSAS-FSHSS----HADDMYEKH-----------KV 46
           K L +K +  E+ TL+   +     +AS  +          D                +V
Sbjct: 79  KPLAVKLDGDEEVTLELDKEGPGEVTASDITVPLDLEVVNPDHVIATLTEDAKLEMELRV 138

Query: 47  FTKDIQWVPIGSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPV 106
           ++ D      G++ D      VGPI  D   + +R    I       +   +DH K+ P 
Sbjct: 139 YSGDGYVPAEGNREDD---PPVGPIAVDAPFSPVRKVQYIVEEARVGQGTDKDHLKWEPE 195

Query: 107 ATAFYRLLPKITLTQEIEGEMAQRLQTMFSPGVISIEKKPN 147
                R    + +  +I  E  +    +    V   E+KP 
Sbjct: 196 TNGSIRPEEALAIAAKILIEHLEVFVELCPKAVEIEEEKPE 236


>gnl|CDD|234837 PRK00783, PRK00783, DNA-directed RNA polymerase subunit D;
           Provisional.
          Length = 263

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 60  GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
           GD+ KSSD  V P+  +I I KL+ G ++ +  +A    G++HAK+ P +   Y+  P+I
Sbjct: 107 GDL-KSSDPDVKPVDPNIPIVKLKEGQKLVLEAYARLGRGKEHAKWQPGSACGYKYYPRI 165

Query: 118 TLTQEIEG 125
            ++++ + 
Sbjct: 166 EVSEDCDE 173


>gnl|CDD|132908 cd07030, RNAP_D, D subunit of Archaeal RNA polymerase.  The D
           subunit of archaeal RNA polymerase (RNAP) is involved in
           the assembly of RNAP subunits. RNAP is a large
           multi-subunit complex responsible for the synthesis of
           RNA. It is the principal enzyme of the transcription
           process, and is a final target in many regulatory
           pathways that control gene expression in all living
           cells. A single distinct RNAP complex is found in
           archaea, which may be responsible for the synthesis of
           all RNAs. The archaeal RNAP harbors homologues of all
           eukaryotic RNAP II subunits with two exceptions (RPB8
           and RPB9). The 12 archaeal subunits are designated by
           letters and can be divided into three functional groups
           that are engaged in: (I) catalysis (A'/A", B'/B" or B);
           (II) assembly (L, N, D and P); and (III) auxiliary
           functions (F, E, H and K). The D subunit is equivalent
           to the RPB3 subunit of eukaryotic RNAP II. It contains
           two subdomains: one subdomain is similar the eukaryotic
           Rpb11/AC19/archaeal L subunit which is involved in
           dimerization, and the other is an inserted beta sheet
           subdomain. The assembly of the two largest archaeal RNAP
           subunits that provide most of the enzyme's catalytic
           functions depends on the presence of the archaeal D/L
           heterodimer.
          Length = 259

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 60  GDMYKSSD--VGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKI 117
           GD+ KSSD  V P++D+I I KL  G ++ +  +A    G++HAK+ P     Y+  P I
Sbjct: 107 GDL-KSSDPDVKPVYDNIPIVKLGKGQKLVLEAYARLGRGKEHAKWQPTTACGYKYYPVI 165

Query: 118 T 118
            
Sbjct: 166 E 166


>gnl|CDD|237878 PRK14979, PRK14979, DNA-directed RNA polymerase subunit D;
           Provisional.
          Length = 195

 Score = 29.8 bits (67), Expect = 0.44
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 64  KSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLL 114
           KS +      +I I KL  G ++++   A+   G+ HAK+ P   A Y+ +
Sbjct: 98  KSENGEVAFKNIPIVKLAEGQKLEIECEALVGTGKIHAKWQP-CNAVYKQI 147


>gnl|CDD|107266 cd06271, PBP1_AglR_RafR_like, Ligand-binding domain of DNA
           transcription repressors specific for raffinose (RafR)
           and alpha-glucosides (AglR) which are members of the
           LacI-GalR family of bacterial transcription regulators. 
           Ligand-binding domain of DNA transcription repressors
           specific for raffinose (RafR) and alpha-glucosides
           (AglR) which are members of the LacI-GalR family of
           bacterial transcription regulators. The LacI-GalR family
           repressors are composed of two functional domains: an
           N-terminal HTH (helix-turn-helix) domain, which is
           responsible for the DNA-binding specificity, and a
           C-terminal ligand-binding domain, which is homologous to
           the sugar-binding domain of ABC-type transport systems
           that contain the type I periplasmic binding protein-like
           fold.  As also observed in the periplasmic binding
           proteins, the C-terminal domain of the bacterial
           transcription repressor undergoes a conformational
           change upon ligand binding which in turn changes the DNA
           binding affinity of the repressor.
          Length = 268

 Score = 29.1 bits (66), Expect = 0.87
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 19/69 (27%)

Query: 80  LRPGHEIDVTMFAVKSIGRD----HAKFSPVATAFY-------RLLPKITLTQEIEGEMA 128
           LRPG ++ V       +G D       FSP  T          R L ++ L   I GE  
Sbjct: 205 LRPGRDVSV-------VGFDDSPPLLFFSPPLTTVRSDLRAAGRRLAEL-LLARIAGEPP 256

Query: 129 QRLQTMFSP 137
           + LQ ++ P
Sbjct: 257 EELQELWPP 265


>gnl|CDD|204742 pfam11784, DUF3320, Protein of unknown function (DUF3320).  This
          family is conserved in Proteobacteria and Chlorobi
          families. Many members are annotated as being putative
          DNA helicase-related proteins.
          Length = 52

 Score = 26.4 bits (59), Expect = 1.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 69 GPIHDDILIAKLRPGH 84
          GPIH+D L  ++    
Sbjct: 25 GPIHEDELARRIARAW 40


>gnl|CDD|197348 cd10040, Reelin_repeat_4_subrepeat_1, N-terminal subrepeat of
          tandem repeat unit 4 of reelin and related proteins.
          Reelin is an extracellular glycoprotein involved in
          neuronal development, specifically in the brain cortex.
          It contains 8 tandemly repeated units, each of which is
          composed of two highly similar subrepeats and a central
          EGF domain. This model characterizes the N-terminal
          subrepeat, which directly contacts the C-terminal
          subrepeat and the EGF domain in a compact arrangement.
          Consecutive reelin repeat units are packed together to
          form an overall rod-like molecular structure. Reelin
          repeats 5 and 6 are reported to interact with neuronal
          receptors, the apolipoprotein E receptor 2 (ApoER2) and
          the very-low-density lipoprotein receptor (VLDLR),
          triggering a signaling cascade upon binding and
          subsequent tyrosine phosphorylation of the cytoplasmic
          disabled-1 (Dab1).
          Length = 170

 Score = 27.2 bits (60), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 17 LQFQLKIKCTKSASFSHSSH 36
          LQF+L + C+K  S SHS  
Sbjct: 60 LQFELSMGCSKPYSNSHSVQ 79


>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
            (contains helicase and exonuclease domains) [DNA
            replication, recombination, and repair].
          Length = 1139

 Score = 27.8 bits (62), Expect = 3.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 101  AKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFS 136
               + + TA + LL  +   ++ E E+A+ L+ M S
Sbjct: 976  VDAAEIGTAIHELLQHLPFEEDWEQELAEWLEAMLS 1011


>gnl|CDD|114876 pfam06183, DinI, DinI-like family.  This family of short proteins
           includes DNA-damage-inducible protein I (DinI) and
           related proteins. The SOS response, a set of cellular
           phenomena exhibited by eubacteria, is initiated by
           various causes that include DNA damage-induced
           replication arrest, and is positively regulated by the
           co- protease activity of RecA. Escherichia coli DinI, a
           LexA-regulated SOS gene product, shuts off the
           initiation of the SOS response when overexpressed in
           vivo. Biochemical and genetic studies indicated that
           DinI physically interacts with RecA to inhibit its
           co-protease activity. The structure of DinI is known.
          Length = 65

 Score = 25.5 bits (56), Expect = 3.9
 Identities = 7/30 (23%), Positives = 18/30 (60%)

Query: 121 QEIEGEMAQRLQTMFSPGVISIEKKPNAGV 150
             ++ E+ +R+Q+++   V+S+ K    G+
Sbjct: 7   DALQNELTKRIQSLYPDTVVSVRKGSANGL 36


>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
           dehydrogenase/3-phosphoshikimate
           1-carboxyvinyltransferase; Provisional.
          Length = 673

 Score = 27.4 bits (60), Expect = 4.0
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 87  DVTM----FAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQRLQTMFSPG 138
           +VTM      V+ IG DH + +P+   F  L+P   +T  +    A    T+ + G
Sbjct: 527 NVTMGDDWIEVRGIGHDHGRLAPIDMDF-NLIPDAAMTIAVAALFADGPSTLRNIG 581


>gnl|CDD|178455 PLN02864, PLN02864, enoyl-CoA hydratase.
          Length = 310

 Score = 26.7 bits (59), Expect = 5.4
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 58  SQGDMYK-SSDVGPIHDDILIAKL----RP-GHEIDVTMFAVKSIGRDHAKFSP--VATA 109
           SQ  +Y+ S D  P+H D + AK+    RP  H +    FAV+++ +      P  V T 
Sbjct: 199 SQALLYRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCFCNGDPTAVKTI 258

Query: 110 FYRLL----PKITLTQEI 123
             R L    P  TL  E+
Sbjct: 259 SGRFLLHVYPGETLVTEM 276


>gnl|CDD|201874 pfam01589, Alpha_E1_glycop, Alphavirus E1 glycoprotein.  E1 forms a
           heterodimer with E2 pfam00943. The virus spikes are made
           up of 80 trimers of these heterodimers (sindbis virus).
          Length = 502

 Score = 26.6 bits (59), Expect = 5.8
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 5   LRLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFT 48
           L L+Y  CE  T+     +KC  +   S  +  D    + KVFT
Sbjct: 106 LNLEYITCEYKTVVPSPYVKCCGTVECSSKAKPD---YQCKVFT 146


>gnl|CDD|218800 pfam05895, DUF859, Siphovirus protein of unknown function (DUF859).
            This family consists of several uncharacterized
           proteins from the Siphoviruses as well as one bacterial
           sequence. Some of the members of this family are
           described as putative minor structural proteins.
          Length = 534

 Score = 26.6 bits (59), Expect = 6.9
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 12/71 (16%)

Query: 36  HADDMYEKHKVFTKDIQWVPIGSQGDMYK--------SSDVGPIHDDILIAKLRPGHEID 87
           +A+    +    T +  W  +G  G  YK          D G     + IA + P H   
Sbjct: 465 YANGSPIQQYQLTINTGWQYVGVSGSFYKRVGGVVTVKYDFGGNGRTLTIASI-PQHFFP 523

Query: 88  VT---MFAVKS 95
                MFA+  
Sbjct: 524 SPQQYMFAISG 534


>gnl|CDD|197347 cd10039, Reelin_repeat_3_subrepeat_1, N-terminal subrepeat of
          tandem repeat unit 3 of reelin and related proteins.
          Reelin is an extracellular glycoprotein involved in
          neuronal development, specifically in the brain cortex.
          It contains 8 tandemly repeated units, each of which is
          composed of two highly similar subrepeats and a central
          EGF domain. This model characterizes the N-terminal
          subrepeat, which directly contacts the C-terminal
          subrepeat and the EGF domain in a compact arrangement.
          Consecutive reelin repeat units are packed together to
          form an overall rod-like molecular structure. Reelin
          repeats 5 and 6 are reported to interact with neuronal
          receptors, the apolipoprotein E receptor 2 (ApoER2) and
          the very-low-density lipoprotein receptor (VLDLR),
          triggering a signaling cascade upon binding and
          subsequent tyrosine phosphorylation of the cytoplasmic
          disabled-1 (Dab1).
          Length = 170

 Score = 25.9 bits (57), Expect = 6.9
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 1  MDKNLRLKYEPCEQDTLQFQLKIKCTKSASFS 32
          + ++L LK        LQF++ I CT   S  
Sbjct: 49 VTRDLTLK----PGYVLQFKVNIGCTSEFSSF 76


>gnl|CDD|181999 PRK09622, porA, pyruvate flavodoxin oxidoreductase subunit alpha;
           Reviewed.
          Length = 407

 Score = 26.3 bits (58), Expect = 7.0
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 57  GSQGDMYKSSDVGPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPV 106
           G   DMY S D G I     +    P    D T+ A K I  D     PV
Sbjct: 125 GDHSDMYLSRDSGWIS----LCTCNPQEAYDFTLMAFK-IAEDQKVRLPV 169


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0772    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,427,955
Number of extensions: 644492
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 30
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)