RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1865
         (152 letters)



>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 131

 Score = 78.9 bits (194), Expect = 3e-20
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 9   YEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFTKDIQWVPIGSQGDMYKSSDV 68
            + C++ ++   L+                       V++KD+  V      ++      
Sbjct: 48  EDHCDKCSVVLTLQAFGESE-------------STTNVYSKDLVIVSNLMGRNIGHPIIQ 94

Query: 69  GPIHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSP 105
               + +LI KLR G E+ +T  A K I ++HAK+ P
Sbjct: 95  DKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGP 131


>d2alaa2 f.10.1.1 (A:1-292) Fusion glycoprotein E1 {Semliki forest
          virus [TaxId: 11033]}
          Length = 292

 Score = 26.3 bits (58), Expect = 1.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 5  LRLKYEPCEQDTLQFQLKIKCTKSASFSHSSHADDMYEKHKVFT 48
          L L+Y  CE  T+     +KC  ++  S     D    + KV+T
Sbjct: 42 LNLEYITCEYKTVVPSPYVKCCGASECSTKEKPD---YQCKVYT 82


>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
           subtilis [TaxId: 1423]}
          Length = 251

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 71  IHDDILIAKLRPGHEIDVTMFAVKSIGRDHAKFSPVATAFYRLLPKITLTQEIEGEMAQ 129
             DD+++A+      +   M     IG      +P+  +F     K+ +   ++  +  
Sbjct: 132 TSDDVVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVI--VDAGIGS 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,866
Number of extensions: 22075
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 5
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)