BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1866
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q59E55|NAB_DROME NGFI-A-binding protein homolog OS=Drosophila melanogaster GN=nab
PE=1 SV=3
Length = 625
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/253 (46%), Positives = 145/253 (57%), Gaps = 50/253 (19%)
Query: 2 MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
M+ TS P NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct: 107 MITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 166
Query: 62 SKPLHVRRLQKALQEWTTNPAMFQTPLV--------------------SPGLPSTNF--L 99
SKPLHVRRLQKAL EW NP +FQ P++ +P LP F
Sbjct: 167 SKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTTPALPRQKFPSF 226
Query: 100 TRSLPSFL----------------GTTPPLVTSLSSPSVSSNVPLP--------SSPPPV 135
S SF+ T PL T +S PS S SSP P
Sbjct: 227 NPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSAPSVPLPLVLPPNPLTSSPHP- 285
Query: 136 ESTSQNFSPGQSPAEVSSPL-QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKI 194
S + N P + +VSS QLTPVL ++QI ++ A ++ R LP EP+AQ ++K+
Sbjct: 286 -SANSNL-PANTAHQVSSSSPQLTPVLTEAQIQRITMCADKIGRQLPQREPRAQTTRKRT 343
Query: 195 CKDLEAVFQMSDE 207
++LE V M ++
Sbjct: 344 TRELEQVIAMGEQ 356
>sp|Q13506|NAB1_HUMAN NGFI-A-binding protein 1 OS=Homo sapiens GN=NAB1 PE=1 SV=2
Length = 487
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 100/154 (64%), Gaps = 5/154 (3%)
Query: 8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
P ELQLYR++Q+A+LL+Y+D ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct: 6 PRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65
Query: 68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP 127
RRLQKAL++W TNP +F PL S LP ++ LP G+ L S SS SSN
Sbjct: 66 RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPE--GSPTWLGISCSSYERSSNAR 121
Query: 128 LPS-SPPPVESTSQNFSPGQSPAEVSSPLQLTPV 160
P P +T+ S GQ ++V L L V
Sbjct: 122 EPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSV 155
>sp|Q62722|NAB1_RAT NGFI-A-binding protein 1 OS=Rattus norvegicus GN=Nab1 PE=2 SV=2
Length = 485
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 130/242 (53%), Gaps = 43/242 (17%)
Query: 5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
T+ P ELQLYR++Q+A+LL+Y+D ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 3 TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62
Query: 65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSS 124
LHVRRLQKAL++W TNP +F PL S LP ++ LP G+ L S +S SS
Sbjct: 63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPE--GSPTWLGISCNSYERSS 118
Query: 125 NVPLPS-SPPPVESTSQNFSPGQSPAEV-------------------------------- 151
+ P P +T+ S GQ +EV
Sbjct: 119 SAREPHLKVPKCAATTCVQSLGQGKSEVGSLALQSVSESRLWQGHHTTESEHSLSPADLG 178
Query: 152 --SSPLQLTPVLDDSQIAKLADIAQQLVRALPHLE----PKAQNSKKKICKDLEAVFQMS 205
+SP + + LD + +A+ +++ LP + + + KK+ K + +F+MS
Sbjct: 179 SPASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKNNKKLAKMIGHIFEMS 238
Query: 206 DE 207
DE
Sbjct: 239 DE 240
>sp|O35589|NAB1_MESAU NGFI-A-binding protein 1 OS=Mesocricetus auratus GN=NAB1 PE=2 SV=1
Length = 485
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 131/240 (54%), Gaps = 39/240 (16%)
Query: 5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
T+ P ELQLYR++Q+A+LL+Y+ ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 3 TALPRTLGELQLYRILQKANLLSYFGAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62
Query: 65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNF----LTRSLPSFLGTTPPLVTSLSSP 120
LHVRRLQKAL++W TNP +F PL S LP ++ L + P++LG + SS
Sbjct: 63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPKGSPTWLGISCNSYERNSSA 120
Query: 121 SVSS-NVPLPSSPPPVESTSQNFSP----------------GQ---------SPAEVSSP 154
+P ++ V+S Q S G SPA+V SP
Sbjct: 121 REPHLKIPKCAATTCVQSLGQGKSEVGSLAVQSVSESRLWQGHHATESEHSLSPADVGSP 180
Query: 155 L---QLTPVLDDSQIAKLADIAQQLVRALPHLE----PKAQNSKKKICKDLEAVFQMSDE 207
+ + LD + +A+ +++ LP + + + KK+ K + +F+MSDE
Sbjct: 181 ASPKESSEALDAAAALSVAECVERMASTLPKSDLNEVKELLKNNKKLAKMIGHIFEMSDE 240
>sp|Q61122|NAB1_MOUSE NGFI-A-binding protein 1 OS=Mus musculus GN=Nab1 PE=1 SV=2
Length = 486
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 104/159 (65%), Gaps = 6/159 (3%)
Query: 5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
T+ P ELQLYR++Q+A+LL+Y+D ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 3 TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62
Query: 65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSS 124
LHVRRLQKAL++W TNP +F PL S LP ++ LP G+ L S +S SS
Sbjct: 63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPE--GSPTWLGISCNSYERSS 118
Query: 125 NVPLPS-SPPPVESTSQNFSPGQSPAEVSSPLQLTPVLD 162
+ P P +T+ S GQ +EV S L L V D
Sbjct: 119 SSREPHLKIPKCAATTCVQSLGQGKSEVGS-LALQSVSD 156
>sp|Q61127|NAB2_MOUSE NGFI-A-binding protein 2 OS=Mus musculus GN=Nab2 PE=1 SV=2
Length = 525
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 104/162 (64%), Gaps = 17/162 (10%)
Query: 8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
P ELQLYRV+QRA+LL+YY+T ++ GGDDVQQLCEAGEEEFLEIMALVGMA+KPLHV
Sbjct: 37 PRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHV 96
Query: 68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP 127
RRLQKAL+EW TNP +F P+ P +P + S+P F ++ + S
Sbjct: 97 RRLQKALREWATNPGLFSQPV--PAVPVS-----SIPLF------KISETAGTRKGSMSN 143
Query: 128 LPSSPPPVESTSQNFSPGQSPAEVS---SPLQLTPVLDDSQI 166
SP ++++FSP +SP E+ SPL P D +I
Sbjct: 144 GHGSPGEKAGSARSFSP-KSPLELGEKLSPLPGGPGAGDPRI 184
>sp|Q15742|NAB2_HUMAN NGFI-A-binding protein 2 OS=Homo sapiens GN=NAB2 PE=1 SV=1
Length = 525
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 104/162 (64%), Gaps = 17/162 (10%)
Query: 8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
P ELQLYRV+QRA+LL+YY+T ++ GGDDVQQLCEAGEEEFLEIMALVGMA+KPLHV
Sbjct: 37 PRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHV 96
Query: 68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP 127
RRLQKAL+EW TNP +F P+ P +P + S+P F ++ + S
Sbjct: 97 RRLQKALREWATNPGLFSQPV--PAVPVS-----SIPLF------KISETAGTRKGSMSN 143
Query: 128 LPSSPPPVESTSQNFSPGQSPAEVS---SPLQLTPVLDDSQI 166
SP ++++FSP +SP E+ SPL P D +I
Sbjct: 144 GHGSPGEKAGSARSFSP-KSPLELGEKLSPLPGGPGAGDPRI 184
>sp|P21333|FLNA_HUMAN Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4
Length = 2647
Score = 33.9 bits (76), Expect = 0.93, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 28/70 (40%)
Query: 89 VSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSP 148
V PGL + N + R LP G VT P S PL + P S + F PG
Sbjct: 1020 VEPGLGADNSVVRFLPREEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSKVKAFGPGLQG 1079
Query: 149 AEVSSPLQLT 158
SP + T
Sbjct: 1080 GSAGSPARFT 1089
>sp|P08153|SWI5_YEAST Transcriptional factor SWI5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI5 PE=1 SV=1
Length = 709
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 108 GTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSPL--QLTPVLDDSQ 165
G +P SL S SV +P+ P V +T P + +SS Q TP
Sbjct: 374 GPSPTKSVSLKSASVDI---MPTIPGSVNNT-----PSVNKVSLSSSYIDQYTPRGKQLH 425
Query: 166 IAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLE 223
+ +++ A + A PHL+P +Q ++ + E VF D V+ K DN D N E
Sbjct: 426 FSSISENALGINAATPHLKPPSQQARHR-----EGVFNDLDPNVLTKNTDNEGDDNEE 478
>sp|A2AWA9|RBGP1_MOUSE Rab GTPase-activating protein 1 OS=Mus musculus GN=Rabgap1 PE=2
SV=1
Length = 1064
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 112 PLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSPLQLTPVLDDSQI 166
PL LS+ S + VPL P P S PGQ +EVSSP TPV D+ +
Sbjct: 90 PLSNQLSASSTINPVPLVGLPKP--EMSLPVKPGQGDSEVSSP--FTPVADEDSV 140
>sp|Q9TL04|RPOC2_NEPOL DNA-directed RNA polymerase subunit beta'' OS=Nephroselmis olivacea
GN=rpoC2 PE=3 SV=1
Length = 1463
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 114 VTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSPLQLTPVL-------DDSQI 166
+T L S S+S+ L V T+Q VS +LTP+L DD +I
Sbjct: 921 MTILDSSSISTKQELDHREAQVIPTTQT---------VSGVHRLTPLLEKTVFSQDDGEI 971
Query: 167 AKLADIAQQLVRALPHLEPKAQ-NSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERI 225
++ ++ LV+ + K + N+ K +A Q +V LK+K+ V + E+
Sbjct: 972 QRMLPFSRALVKPVRTNRSKTRRNASGKTQVKAQARSQAKARSVRLKLKETVKTRSQEKF 1031
Query: 226 TNK 228
TN+
Sbjct: 1032 TNE 1034
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,341,162
Number of Sequences: 539616
Number of extensions: 3637677
Number of successful extensions: 17365
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 409
Number of HSP's that attempted gapping in prelim test: 16048
Number of HSP's gapped (non-prelim): 1543
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)