RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1866
(235 letters)
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 142
Score = 52.1 bits (124), Expect = 6e-09
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 152 SSPLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQ----NSKKKICKDLEAVFQMSDE 207
S LD + +A+ +++ LP + + KK+ K + +F+M+D+
Sbjct: 1 GSSGSSGEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDD 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 6e-06
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 47/151 (31%)
Query: 109 TTPPLVTSLSSPSVSSNVPLPSS----------------PPPVESTSQNFSPGQSPAE-- 150
+T PL LS S+ + +P++ P P E + + P +PAE
Sbjct: 5 STRPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP-TTPAELV 61
Query: 151 ------VSSPLQLTPVLDDSQIAKLA------------DIAQQLVRALPHLEPKAQNSKK 192
VSS ++ + V Q+ L DI L L K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTK 120
Query: 193 KICKD-LEAVFQMSDEAVILKVKDNVHDSNL 222
++ K+ + A + + D +S L
Sbjct: 121 ELIKNYITAR------IMAKRPFDKKSNSAL 145
Score = 32.7 bits (74), Expect = 0.11
Identities = 38/222 (17%), Positives = 61/222 (27%), Gaps = 76/222 (34%)
Query: 11 EAELQLYRVMQRASLL---AYYDTLLEMGGDDVQQLCEAGEEEFL---EIMALVGMAS-- 62
+ L + Q A L A ++ L G AG E AL +A
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF-AG----HSLGEYAALASLADVM 1777
Query: 63 ------KPLHVR--RLQKALQE---WTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTP 111
+ + R +Q A+ +N M ++PG + +F +L
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA---INPGRVAASFSQEALQY------ 1828
Query: 112 PLVTSLSSPS---VSSNVPLPSSPPPVESTSQNF-SPGQSPAEVSSPLQLTPVLDDSQIA 167
+V + + V V N+ Q Q
Sbjct: 1829 -VVERVGKRTGWLVE----------IV-----NYNVENQ------------------QYV 1854
Query: 168 KLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAV 209
A L RAL + K + +E +S E V
Sbjct: 1855 ----AAGDL-RALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 39/248 (15%), Positives = 80/248 (32%), Gaps = 68/248 (27%)
Query: 30 DTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLV 89
+T+LEM +Q+L + + ++ L + +Q L+ L
Sbjct: 196 ETVLEM----LQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRL----------LK 239
Query: 90 SPGLPSTNFL--------TRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQN 141
S N L ++ +F + L+T+ ++ ++ S
Sbjct: 240 SKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 142 FSPGQS---------------PAEVS--SPLQLTPV-------------LDDSQIAKLAD 171
+P + P EV +P +L+ + KL
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 172 IAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSD----EAVILKVKDNVHDSNLERITN 227
I + +L LEP +K+ L +VF ++ + +V S++ + N
Sbjct: 358 IIE---SSLNVLEP---AEYRKMFDRL-SVFP-PSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 228 KKYGRQLL 235
K + L+
Sbjct: 410 KLHKYSLV 417
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 34.8 bits (79), Expect = 0.009
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 17 YRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE 76
+ L Y L G + L + E E + ++ + + H +R+ +L +
Sbjct: 92 AEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVL---KI-NLIGHRKRILASLGD 147
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 32.5 bits (74), Expect = 0.030
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTP 87
Y D+ L G +Q + + E+ L I G+ + H +++ ++ + Q+P
Sbjct: 37 YRDSFLTAGFTSLQLVTQMTSEDLLRI----GI-TLAGHQKKILNSIHSMRVQ--ISQSP 89
Query: 88 LVSPGLPST 96
PS+
Sbjct: 90 TAMASGPSS 98
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 31.3 bits (71), Expect = 0.061
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
S+ + ++ + Y + + G ++++ + ++ I G+ P
Sbjct: 4 GSSGEGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRI----GV-RLP 58
Query: 65 LHVRRLQKALQEWTTNPAMFQTPLVSPG 92
H +R+ +L P+ P
Sbjct: 59 GHQKRIAYSLLGLKDQVNTVGIPISGPS 86
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 31.6 bits (71), Expect = 0.10
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE 76
YY L++ G +++ + + E+ EI G+ +K H ++L A+++
Sbjct: 94 YYKVLVDNGYENIDFITDITWEDLQEI----GI-TKLGHQKKLMLAVRK 137
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 30.2 bits (68), Expect = 0.12
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE 76
Y + L+ G DD++ L + EE+ E G+ P H R L LQ
Sbjct: 41 YEEGLVHNGWDDLEFLSDITEEDLEEA----GV-QDPAHKRLLLDTLQL 84
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell
signaling, angiogenesis, apopt ATP-binding, cataract;
NMR {Homo sapiens}
Length = 82
Score = 30.2 bits (68), Expect = 0.14
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE 76
Y + + G ++++ + ++ I G+ P H +R+ +L
Sbjct: 31 YTEHFMAAGYTAIEKVVQMTNDDIKRI----GV-RLPGHQKRIAYSLLG 74
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: a.60.1.2
Length = 81
Score = 29.7 bits (67), Expect = 0.19
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTP 87
Y D G + + ++ + G+ + H +++ ++Q Q
Sbjct: 22 YRDHFAAGGYSSLGMVLRMNAQDVRAL----GI-TLMGHQKKILGSIQTMRAQLTSTQGS 76
Query: 88 LVSPG 92
S G
Sbjct: 77 GPSSG 81
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 29.3 bits (66), Expect = 0.27
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE 76
Y ++ G + + E+ L + G+ + H +++ ++Q
Sbjct: 26 YKESFANAGFTSFDVVSQMMMEDILRV----GV-TLAGHQKKILNSIQV 69
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 29.0 bits (65), Expect = 0.34
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 28 YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPA 82
Y TLL G + + L + E +E+ + + P RL A + + P+
Sbjct: 27 YTSTLLLNGYETLDDLKDIKESHLIEL----NI-ADPEDRARLLSAAESLLSGPS 76
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 28.3 bits (63), Expect = 0.56
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 28 YYDTLLEMGGDDVQQLCEAG-EEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPA 82
Y + L+ G D+VQ + E++ L + G+ H +R+ +A+Q + P+
Sbjct: 27 YENHLMANGFDNVQFMGSNVMEDQDLLEI---GI-LNSGHRQRILQAIQLLPSGPS 78
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.0 bits (67), Expect = 0.84
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 90 SPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVS--SNVPLPSSPPPVESTSQNFSPGQS 147
SPG ++ S PS+ T+P S +SPS S S P+SP +TS ++SP S
Sbjct: 1562 SPGYSTSPAYMPSSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSY-SATSPSYSPT-S 1617
Query: 148 PAEVSSPLQLTP 159
P+ + +P
Sbjct: 1618 PSYSPTSPSYSP 1629
Score = 29.7 bits (66), Expect = 1.1
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 79 TNPAMFQT-PLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSP----- 132
T+P+ T P SP PS + + PS+ T+P + S S +S P+SP
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSATS---PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1644
Query: 133 -PPVESTSQNFSPGQSPAEVSSP 154
P TS ++SP +SP
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 29.3 bits (65), Expect = 1.2
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 85 QTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSP------PPVEST 138
+P SP PS + + PS+ T+P + S S +S P+SP P T
Sbjct: 1644 TSPSYSPTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Query: 139 SQNFSPGQSPAEVSSP 154
S ++SP +SP
Sbjct: 1701 SPSYSPTSPSYSPTSP 1716
Score = 28.5 bits (63), Expect = 2.4
Identities = 16/77 (20%), Positives = 26/77 (33%)
Query: 78 TTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVES 137
L+ P + S + L+SPS S + P S+ P
Sbjct: 1514 EGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP 1573
Query: 138 TSQNFSPGQSPAEVSSP 154
+S ++SP +SP
Sbjct: 1574 SSPSYSPTSPSYSPTSP 1590
Score = 28.1 bits (62), Expect = 2.9
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 80 NPAMFQTPLVSPGL-PSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVES- 137
+P SP P++ + + PS+ T+P S +SPS S P S P S
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSP 1713
Query: 138 TSQNFSPGQSPAEVSSPLQLTP 159
TS ++SP SP+ + +P
Sbjct: 1714 TSPSYSP-TSPSYSPTSPSYSP 1734
Score = 27.7 bits (61), Expect = 4.5
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 78 TTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSP----- 132
+ + A F +PLV G +P + SP +S SP
Sbjct: 1499 SPDAAAF-SPLVQGGSEGREGFGDYGLLG-AASPY--KGVQSPGYTSPFSSAMSPGYGLT 1554
Query: 133 -PPVESTSQNF--SPGQSPAEVSSP 154
P +S + SP P SSP
Sbjct: 1555 SPSYSPSSPGYSTSPAYMP---SSP 1576
Score = 27.3 bits (60), Expect = 5.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 104 PSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVES-TSQNFSPGQSPAEVSSP 154
PS+ T+P S +SPS S P S P S TS ++SP +SP
Sbjct: 1639 PSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 28.7 bits (65), Expect = 1.7
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 181 PHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQL 234
P L + + DLE + ++ V N +D+ L+ + NK Y R +
Sbjct: 350 PMLNKLESEDQSVLVNDLENFKKQANIIVT-----NRYDNELQDVKNKVYSRDI 398
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.9 bits (64), Expect = 1.7
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 79 TNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLS-------SPSVSSNVPLPSS 131
P ++ LV+ L + L S G+ + + + S +
Sbjct: 1470 VTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEA 1529
Query: 132 P--PPVESTSQNFSPGQSPAEVSSP 154
P P +S FSP +SP
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSP 1554
Score = 28.1 bits (62), Expect = 3.0
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 83 MFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVT-----SLSSPSVSSNVPLPSSPPPVES 137
+P P++ + + PS+ T+P S +SPS S P S P S
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 138 TSQNFSPGQSPAEVSSPLQLTP 159
+ SP+ + +P
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSP 1656
Score = 27.8 bits (61), Expect = 4.1
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 81 PAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQ 140
A S F S P F T+P + + S +S P+SP TS
Sbjct: 1518 EATSPFGAYGEAPTSPGFGVSS-PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYS-PTSP 1575
Query: 141 NFSPGQSPAEVSSP 154
++SP +SP
Sbjct: 1576 SYSPTSPSYSPTSP 1589
Score = 27.4 bits (60), Expect = 6.0
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 87 PLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVES-TSQNFSPG 145
P SP PS + + PS+ T+P S +SPS S P S P S TS ++SP
Sbjct: 1603 PSYSPTSPSYSPTS---PSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1657
Query: 146 QSPAEVSSP 154
+SP
Sbjct: 1658 SPAYSPTSP 1666
Score = 27.0 bits (59), Expect = 6.9
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 80 NPAMFQTPLVSPGL-PSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPS-SPPPVES 137
+P SP P++ + + PS+ T+P S +SPS S P S + P
Sbjct: 1606 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPAYSP 1663
Query: 138 TSQNFSPGQSPAEVSSP 154
TS ++SP +SP
Sbjct: 1664 TSPSYSPTSPSYSPTSP 1680
Score = 26.6 bits (58), Expect = 9.7
Identities = 18/114 (15%), Positives = 28/114 (24%), Gaps = 3/114 (2%)
Query: 39 DVQQLCEAGEEEFLE-IMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTN 97
D + L + E+ + I P + MF + S +
Sbjct: 1446 DEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMA 1505
Query: 98 FLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPP--PVESTSQNFSPGQSPA 149
+ + +S SSP P T SP SP
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559
Score = 26.6 bits (58), Expect = 9.9
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 85 QTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP--LPSSP------PPVE 136
+P P++ + + PS+ T+P S +SP+ S P P+SP P
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 137 STSQNFSPGQSPAEVSSP 154
TS ++SP +SP
Sbjct: 1684 PTSPSYSPTSPNYSPTSP 1701
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 28.7 bits (63), Expect = 1.7
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 96 TNFLTRSLPS-------FLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSP 148
+N+L R L G L P S ++P ++++ S
Sbjct: 2 SNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPV 61
Query: 149 AEVSSPLQLTPVLDDSQIAKLADIAQQLVRAL 180
A ++P + L++ +Q A
Sbjct: 62 ASPAAPSP-GSSGGGGFFSSLSNAVKQTTAAA 92
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.7
Identities = 2/15 (13%), Positives = 10/15 (66%)
Query: 135 VESTSQNFSPGQSPA 149
++++ + ++ +PA
Sbjct: 25 LQASLKLYADDSAPA 39
Score = 27.6 bits (60), Expect = 2.5
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 191 KKKICKDLEAVFQM--SDEAVILKVKDNV 217
K+ + K L+A ++ D A L +K +
Sbjct: 19 KQAL-KKLQASLKLYADDSAPALAIKATM 46
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 26.8 bits (59), Expect = 3.1
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 28 YYDTLLEMGGDDVQQLCEAG-EEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQT 86
Y + L+ G D+VQ + E++ L + G+ H +R+ +A+Q +
Sbjct: 37 YENHLMANGFDNVQFMGSNVMEDQDLLEI---GI-LNSGHRQRILQAIQLLPKMRPIGHD 92
Query: 87 PLVSPGLPS 95
+
Sbjct: 93 GYHPTSVAE 101
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.8 bits (61), Expect = 3.7
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 4/102 (3%)
Query: 85 QTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSP 144
S +P + + S + +L P VP P+ PPP + N
Sbjct: 7 HHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPV---TVPDPAPPPPPAPAAGNPPD 63
Query: 145 GQSPAEVSSPLQLTPV-LDDSQIAKLADIAQQLVRALPHLEP 185
+ V + P + +A +Q P P
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAP 105
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621,
glycerophosphodiester phosphodiesterase (GDPD), STRU
genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP:
c.1.18.3
Length = 234
Score = 27.3 bits (61), Expect = 4.1
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 214 KDNV----HDSNLERITNKK 229
KD HD +L+R+
Sbjct: 52 KDGKVVVSHDEDLKRLFGLD 71
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta
propeller, abscisic acid, non iron, oxidoreductase;
3.20A {Zea mays}
Length = 529
Score = 27.0 bits (59), Expect = 6.0
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 89 VSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSP 144
G N R+ + L + + LPS+ P + NF+P
Sbjct: 2 AEGGKKQLNLFQRAAAAALDA---FEEGFVANVLERPHGLPSTADPAVQIAGNFAP 54
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase,
lyase-transferase COMP; 2.50A {Xanthomonas campestris
PV}
Length = 143
Score = 26.0 bits (58), Expect = 8.1
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 59 GM---ASKPLHVRRLQKALQEWTTNPAMFQTP 87
G +KP+ +L L + + TP
Sbjct: 112 GARAFLAKPVVAAKLLDTLADLAVSTRQLATP 143
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 26.3 bits (58), Expect = 9.6
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 12 AELQLYRVMQRASLLAYYDTLLEMGGDDVQQ 42
A + +M+ A+ L + + D
Sbjct: 503 AGQVIAALMRVATALMLSVSHVISTSLDGHI 533
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.358
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,369,421
Number of extensions: 190616
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 53
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.9 bits)