RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1866
         (235 letters)



>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH),
           C-terminal (UDP-binding) domain {Streptococcus pyogenes
           [TaxId: 1314]}
          Length = 108

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 181 PHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQL 234
           P L       +  +  DLE   + ++  +I+    N +D+ L+ + NK Y R +
Sbjct: 56  PMLNKLESEDQSVLVNDLENFKKQAN--IIVT---NRYDNELQDVKNKVYSRDI 104


>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 31.4 bits (71), Expect = 0.015
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 20 MQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT 79
          +    +  Y D     G   +  +     ++   +    G+ +   H +++  ++Q    
Sbjct: 14 LDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRAL----GI-TLMGHQKKILGSIQTMRA 68

Query: 80 NPAMFQTPLVSPG 92
               Q    S G
Sbjct: 69 QLTSTQGSGPSSG 81


>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
           {Helicobacter pylori [TaxId: 210]}
          Length = 217

 Score = 30.1 bits (67), Expect = 0.16
 Identities = 7/80 (8%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 23  ASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA-SKPLHVRRLQKALQEWTTNP 81
            +L   +    +    +++++      +  E +   G    K   +  L   + +   + 
Sbjct: 52  ENLKNAFILEND-DEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSF 110

Query: 82  AMFQTPLVSPGLPSTNFLTR 101
             F+  +    L     + +
Sbjct: 111 ENFKQEVTREWLLDQKGIGK 130


>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 78

 Score = 26.9 bits (59), Expect = 0.70
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 6  STPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPL 65
          S+   E    +   ++R  L  Y  TLL  G + +  L +  E      +  + + + P 
Sbjct: 5  SSGRRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESH----LIELNI-ADPE 59

Query: 66 HVRRLQKALQEWTTNPA 82
             RL  A +   + P+
Sbjct: 60 DRARLLSAAESLLSGPS 76


>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
          sapiens) [TaxId: 9606]}
          Length = 78

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 11 EAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRL 70
          E  + +   +   +L  Y     E G   V+      +    +I    G+ S   H RR+
Sbjct: 6  EVNVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKI----GI-SPTGHRRRI 60

Query: 71 QKALQE 76
           K LQ 
Sbjct: 61 LKQLQI 66


>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
          {Human (Homo sapiens), ubc9 [TaxId: 9606]}
          Length = 156

 Score = 26.7 bits (58), Expect = 1.9
 Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 5/23 (21%)

Query: 59 GMASKPLHVRRLQKALQEWTTNP 81
          G+A     + RL +  + W  + 
Sbjct: 1  GIA-----LSRLAQERKAWRKDH 18


>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 117

 Score = 25.4 bits (55), Expect = 4.3
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 60 MASKPLHVRRLQKALQEWTTNP 81
          MAS     +RLQK L     +P
Sbjct: 1  MASMQ---KRLQKELLALQNDP 19


>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
           {Caenorhabditis elegans, E2 2 [TaxId: 6239]}
          Length = 147

 Score = 25.1 bits (54), Expect = 5.5
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 60  MASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSS 119
           MA     ++R+QK LQ+   +P        S G    +              P    +  
Sbjct: 1   MA-----LKRIQKELQDLGRDP----PAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFF 51

Query: 120 PSVSSNVPLPSSPPPVESTSQNFSP 144
            ++      P  PP V  T++ + P
Sbjct: 52  LTIHFPTDYPFKPPKVAFTTRIYHP 76


>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
          {Human(Homo sapiens), E2 S [TaxId: 9606]}
          Length = 151

 Score = 24.7 bits (53), Expect = 7.3
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 63 KPLHVRRLQKALQEWTTNP 81
           P  +R + K +   T +P
Sbjct: 4  PPHIIRLVYKEVTTLTADP 22


>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
          domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 282

 Score = 25.0 bits (54), Expect = 8.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 41 QQLCEAGEEEFLEIMALVGMASKPLHVRR 69
          QQL  A  + FLE    + + S P+  R 
Sbjct: 4  QQLHAAMADTFLEHKCRLDIDSAPITARN 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 794,555
Number of extensions: 34765
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 12
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)