BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1868
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
 pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
          Length = 404

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           DNG+A TP MGWL WERF CN DC+ +P++CISE+LF  MA+L+VSEG+   GYEY+ ID
Sbjct: 2   DNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCID 61

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW+   R   GRLQAD +RFP GI  L+N
Sbjct: 62  DCWMAPQRDSEGRLQADPQRFPHGIRQLAN 91


>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
           Bound
 pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
           Bound
 pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
 pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
          Length = 404

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           DNG+A TP MGWL WERF CN DC+ +P++CISE+LF  MA+L+VSEG+   GYEY+ ID
Sbjct: 2   DNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCID 61

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW+   R   GRLQAD +RFP GI  L+N
Sbjct: 62  DCWMAPQRDSEGRLQADPQRFPHGIRQLAN 91


>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
 pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
 pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
 pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
 pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
 pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
 pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
           With Galactose At Ph 4.5
 pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
           With Galactose At Ph 4.5
 pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
           Complexed With 1- Deoxygalactonijirimycin
 pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
           Complexed With 1- Deoxygalactonijirimycin
 pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
           Active Site
 pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
           Active Site
 pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
           Intermediate
 pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
           Intermediate
 pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
           Bound
 pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
           Bound
 pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
 pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
 pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
 pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
          Length = 398

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           DNG+A TP MGWL WERF CN DC+ +P++CISE+LF  MA+L+VSEG+   GYEY+ ID
Sbjct: 2   DNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCID 61

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW+   R   GRLQAD +RFP GI  L+N
Sbjct: 62  DCWMAPQRDSEGRLQADPQRFPHGIRQLAN 91


>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
 pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
          Length = 405

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 66/90 (73%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           +NG+A TPPMGWLAWERFRCN +C+ DP  CISE LF  MAD +  +G+  +GY+YINID
Sbjct: 2   ENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINID 61

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW  K R   GRL  D +RFPRGI  L++
Sbjct: 62  DCWAAKQRDAEGRLVPDPERFPRGIKALAD 91


>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
 pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
 pdb|3H54|A Chain A, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase,Complex With Galnac
 pdb|3H54|B Chain B, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase,Complex With Galnac
 pdb|3H55|A Chain A, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase, Complex With Galactose
 pdb|3H55|B Chain B, Crystal Structure Of Human
           Alpha-N-Acetylgalactosaminidase, Complex With Galactose
 pdb|3IGU|A Chain A, Crystal Structure Of Human
           Alpha-n-acetylgalactosaminidase, Covalent Intermediate
 pdb|3IGU|B Chain B, Crystal Structure Of Human
           Alpha-n-acetylgalactosaminidase, Covalent Intermediate
 pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
 pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
           Alpha-N-Acetylgalactosaminidase
          Length = 400

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 1/90 (1%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           DNG+  TPPMGWLAWERFRCN +C  DP+NCISE+LF  MAD +  +G+  +GY Y+NID
Sbjct: 2   DNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNID 61

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW+   R  +GRL  D KRFP GI  L++
Sbjct: 62  DCWIGG-RDASGRLMPDPKRFPHGIPFLAD 90


>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
          Length = 362

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           +NG+  TP MGW +W  F C           I+E++ R  AD +V+ G A +GY+Y+NID
Sbjct: 2   ENGLGRTPQMGWNSWNHFYCG----------INEQIIRETADALVNTGLAKLGYQYVNID 51

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW + +R   G    + + FP GI  L++
Sbjct: 52  DCWAEYSRDSQGNFVPNRQTFPSGIKALAD 81


>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
           Mortierella Vinacea
          Length = 397

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           +NG+A+TP MGW  W ++ CN D          E+L    A  + S G   +GY Y+ ID
Sbjct: 2   NNGLAITPQMGWNTWNKYGCNVD----------EQLILDAAKAIASSGLKDLGYNYVIID 51

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADL 106
           DCW    R  +  L AD  +FPRGI  L
Sbjct: 52  DCWQKNERESSKTLLADPTKFPRGIKPL 79


>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
 pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
           Reesei Complexed With Beta-D-Galactose
          Length = 417

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           D      P +GW +W  + C+ D          E  F + A+L+VS G    GY Y+NID
Sbjct: 5   DGVTGKVPSLGWNSWNAYHCDID----------ESKFLSAAELIVSSGLLDAGYNYVNID 54

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLS 107
           DCW  K    +G +  +A RFP GI  L+
Sbjct: 55  DCWSMKDGRVDGHIAPNATRFPDGIDGLA 83


>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
           Cerevisiae
 pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
           Cerevisiae With Melibiose
          Length = 479

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 11/89 (12%)

Query: 20  NGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDD 79
           NG+ LTP MGW  W  F C+          +SE+L    AD +   G   +GY+YI +DD
Sbjct: 24  NGLGLTPQMGWDNWNTFACD----------VSEQLLLDTADRISDLGLKDMGYKYIILDD 73

Query: 80  CWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           CW    R  +G L AD ++FP G+  +++
Sbjct: 74  CW-SSGRDSDGFLVADEQKFPNGMGHVAD 101


>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
           Cerevisiae With Raffinose
 pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
           Cerevisiae With Raffinose
 pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
           Cerevisiae With Raffinose
 pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
           Cerevisiae With Raffinose
          Length = 479

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 11/89 (12%)

Query: 20  NGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDD 79
           NG+ LTP MGW  W  F C+          +SE+L    AD +   G   +GY+YI +DD
Sbjct: 24  NGLGLTPQMGWDNWNTFACD----------VSEQLLLDTADRISDLGLKDMGYKYIILDD 73

Query: 80  CWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           CW    R  +G L AD ++FP G+  +++
Sbjct: 74  CW-SSGRDSDGFLVADEQKFPNGMGHVAD 101


>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
           Arabinopyranosidase
 pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
           Arabinopyranosidase
 pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
           With L- Arabinose
 pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
           With L- Arabinose
 pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
           With D- Galactose
 pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
           With D- Galactose
          Length = 614

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 25  TPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK 84
           + PMGW +W  F    D            + +   D  V+ G  A GY YINID+ W   
Sbjct: 11  SAPMGWASWNSFAAKIDYS----------VIKKQVDAFVAAGLPAAGYTYINIDEGWWQG 60

Query: 85  TRSFNGRLQADAKRFPRGIADLS 107
           TR   G +  D   +P G++ ++
Sbjct: 61  TRDSAGNITVDTAEWPGGMSAIT 83


>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Apo Form
 pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With
           Ampcpp And Naad+
 pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With
           Ampcpp And Naad+
 pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With
           Ampcpp And Naad+
 pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With
           Ampcpp And Naad+
 pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With Atp
           And Naad+
 pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With Atp
           And Naad+
 pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With Atp
           And Naad+
 pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
           Nad+ Synthetase From M. Tuberculosis In Complex With Atp
           And Naad+
 pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
           Synthetase From M. Tuberculosis Bound To AmpPPI AND
           NAAD+
 pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
           Synthetase From M. Tuberculosis Bound To AmpPPI AND
           NAAD+
 pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
           Synthetase From M. Tuberculosis Bound To AmpPPI AND
           NAAD+
 pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
           Synthetase From M. Tuberculosis Bound To AmpPPI AND
           NAAD+
          Length = 680

 Score = 28.9 bits (63), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 67  YAAVGYEYINIDDCWLDKTRSF-NGRLQADAKRFPRGI 103
           YAA G      D  W  +T  + NG L A+++RFP+G+
Sbjct: 231 YAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKGV 268


>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
 pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
 pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
 pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
          Length = 680

 Score = 28.5 bits (62), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 67  YAAVGYEYINIDDCWLDKTRSF-NGRLQADAKRFPRGI 103
           YAA G      D  W  +T  + NG L A+++RFP+G+
Sbjct: 231 YAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKGV 268


>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
           Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
           Halodurans C-125 At 2.00 A Resolution
 pdb|3CC1|B Chain B, Crystal Structure Of A Putative
           Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
           Halodurans C-125 At 2.00 A Resolution
          Length = 433

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 24/91 (26%)

Query: 23  ALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWL 82
           ALTPP GW +W+ +  +          ++E      A+   +      G+EYI +D  W 
Sbjct: 9   ALTPPXGWNSWDCYGAS----------VTEEEVLGNAEYXANH-LKKYGWEYIVVDIQWY 57

Query: 83  DKT---RSFN----------GRLQADAKRFP 100
           + T    ++N          GRL     RFP
Sbjct: 58  EPTANSSAYNPFAPLCXDEYGRLLPATNRFP 88


>pdb|1J27|A Chain A, Crystal Structure Of A Hypothetical Protein, Tt1725,
          From Thermus Thermophilus Hb8 At 1.7a Resolution
          Length = 102

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 66 GYAAVGYEYINIDDCWLDKTRSFNGRLQADAKRF 99
          GY  VG+  +  D  W+++T     R  A+A  F
Sbjct: 51 GYEVVGFTLLGNDPAWVEETMRAAARFLAEAGGF 84


>pdb|2JPF|A Chain A, Bpp3783_115-220
          Length = 127

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 74  YINIDDCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           + N+D  WLD  R+ +  LQ D K + + + DL  
Sbjct: 32  HANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHT 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,033,912
Number of Sequences: 62578
Number of extensions: 102678
Number of successful extensions: 199
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 16
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)